Psyllid ID: psy15906

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccEEccccccHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHcccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccEEEccccccHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccEEEEEccccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHccHEHEEEEHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHHccEEHHHcccccEEEEcccEEHHHHHHHHHccccccccEEcccccccccccHHcHHHHHHHHHcccccccccccccccccccccccccEEEEHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccHHHcccEEEcccccccccccc
Coil and Loop (DISEMBL)
miysiddcrplgedpteHAVQMYCEDGEYNTLAALWLQVPEKsvrtmlhdpkgafgvFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQsifpeatwidpgkyALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQlsgipllawdppplssnitarivkshpviclrpletVGNIIDVLKatshngfpivdvepmtkhssdgaeqssagstdshkgdtshkrdsshkgdasrkdspgrlVGLILRSQLIILIKHKIykenqnwpddqlsseifhaeyprypsvndlvvsendRSFTVKLNLFMNTSPFSE
Flexible Loop (DISEMBL)
miysiddcrplgedpTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGaeqssagstdshkgdtshkrdsshkgdasrkdspgrlvGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNlfmntspfse
Low Complexity Region (SEG)
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE
Disordered region (IsUnstruct)
*****************HAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV*********************************************RLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFM*******
Disordered Region (DISOPRED)
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTD***************************VGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS*
Disordered Region (DISEMBL)
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM***************************************SPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE
Disordered Region (DISPRO)
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHK********************PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSP***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
P51798	805	H(+)/Cl(-) exchange trans	yes	N/A	0.889	0.388	0.470	3e-90
O70496	803	H(+)/Cl(-) exchange trans	yes	N/A	0.889	0.389	0.470	4e-90
P51799	803	H(+)/Cl(-) exchange trans	yes	N/A	0.889	0.389	0.467	6e-90
Q4PKH3	809	H(+)/Cl(-) exchange trans	yes	N/A	0.889	0.386	0.461	5e-88
P51797	869	Chloride transport protei	no	N/A	0.857	0.347	0.354	2e-48
O35454	870	Chloride transport protei	no	N/A	0.957	0.387	0.322	3e-48
Q9TT16	869	Chloride transport protei	yes	N/A	0.832	0.337	0.348	1e-47
Q86AZ6	815	Chloride channel protein	yes	N/A	0.957	0.413	0.304	1e-40
Q54AX6	863	Chloride channel protein	no	N/A	0.764	0.311	0.318	6e-40
P92942	780	Chloride channel protein	yes	N/A	0.815	0.367	0.311	7e-37

>sp|P51798|CLCN7_HUMAN H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2

 Score =  332 bits (851), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/355 (47%), Positives = 226/355 (63%), Gaps = 42/355 (11%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct: 431 LIYSSRDCQPLQGGSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPLTL 490

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
            +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct: 491 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 550

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct: 551 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 610

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVDVEPMT 238
           +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+     
Sbjct: 611 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVE----- 665

Query: 239 KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298
                            H  DT                 P RL GLILRSQLI+L+KHK+
Sbjct: 666 -----------------HADDTQ----------------PARLQGLILRSQLIVLLKHKV 692

Query: 299 YKENQNWP--DDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           + E  N      +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP++
Sbjct: 693 FVERSNLGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYT 747

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
Homo sapiens (taxid: 9606)

>sp|O70496|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1

 Score =  332 bits (850), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/355 (47%), Positives = 226/355 (63%), Gaps = 42/355 (11%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct: 429 LIYSSRDCQPLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 488

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
            +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct: 489 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 548

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct: 549 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 608

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVDVEPMT 238
           +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+     
Sbjct: 609 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE----- 663

Query: 239 KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298
                              GDT                 P RL GLILRSQLI+L+KHK+
Sbjct: 664 -----------------DVGDTQ----------------PARLQGLILRSQLIVLLKHKV 690

Query: 299 YKENQNWP--DDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           + E  N      +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP++
Sbjct: 691 FVERSNMGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYT 745

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Mus musculus (taxid: 10090)

>sp|P51799|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1

 Score =  331 bits (848), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/355 (46%), Positives = 226/355 (63%), Gaps = 42/355 (11%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct: 429 LIYSSRDCQPLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 488

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
            +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + +  +   A W DPGKYAL+
Sbjct: 489 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALM 548

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct: 549 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 608

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVDVEPMT 238
           +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+     
Sbjct: 609 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE----- 663

Query: 239 KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298
                              GDT                 P RL GLILRSQLI+L+KHK+
Sbjct: 664 -----------------DVGDTQ----------------PARLQGLILRSQLIVLLKHKV 690

Query: 299 YKENQNWP--DDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           + E  N      +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP++
Sbjct: 691 FVERSNMGLVQRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYT 745

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Rattus norvegicus (taxid: 10116)

>sp|Q4PKH3|CLCN7_BOVIN H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1

 Score =  325 bits (832), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 164/355 (46%), Positives = 226/355 (63%), Gaps = 42/355 (11%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           +IYS  DC+PL      + +Q++C DGEYN++A  +   PEKSV ++ HDP G++   +L
Sbjct: 435 LIYSSRDCQPLRGSSVSYPLQLFCADGEYNSMAVAFFNTPEKSVVSLFHDPPGSYNPMTL 494

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
            +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  I   A W DPGKYAL+
Sbjct: 495 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAVWADPGKYALM 554

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGG+VRMT+SLT+I++EAT ++++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct: 555 GAAAQLGGIVRMTLSLTVIMMEATSSVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 614

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVDVEPMT 238
           +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL +T+  HNGFP+V+     
Sbjct: 615 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSSTASNHNGFPVVE----- 669

Query: 239 KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298
              +DG +                               P RL GLILRSQLI+L+KHK+
Sbjct: 670 --DADGTQ-------------------------------PARLQGLILRSQLIVLLKHKV 696

Query: 299 YKENQNW--PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           + E  +      +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP++
Sbjct: 697 FVERSSMGLLRRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYT 751

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Bos taurus (taxid: 9913)

>sp|P51797|CLCN6_HUMAN Chloride transport protein 6 OS=Homo sapiens GN=CLCN6 PE=1 SV=2

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 165/313 (52%), Gaps = 11/313 (3%)

Query: 13  EDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSV 72
           ED        +C +  YN +A L+    E ++  + H   G F   +L++F V YFLL+ 
Sbjct: 419 EDVNSSIKTFFCPNDTYNDMATLFFNPQESAILQLFHQ-DGTFSPVTLALFFVLYFLLAC 477

Query: 73  WTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRM 132
           WTYG+SV  G+F+P LL GAA+GRL +  L+S +     I  G +ALIGAAA LGGVVRM
Sbjct: 478 WTYGISVPSGLFVPSLLCGAAFGRLVANVLKS-YIGLGHIYSGTFALIGAAAFLGGVVRM 536

Query: 133 TISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLS 192
           TISLT+ILIE+T  I++GLP+M+TL+ AKW GDFF +G+YDIH+ L G+PLL W+     
Sbjct: 537 TISLTVILIESTNEITYGLPIMVTLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETEVEM 596

Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGS 252
             + A  +    +  + P   + +++ +L+ T H+ FP+V      +       Q  + +
Sbjct: 597 DKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKGNQLISNN 656

Query: 253 TDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS 312
               K     +     K   S K  P         S+L  +    I  E     +D L  
Sbjct: 657 IKFKKSSILTRAGEQRKRSQSMKSYPS--------SELRNMCDEHIASEEPAEKEDLL-Q 707

Query: 313 EIFHAEYPRYPSV 325
           ++    Y  YP++
Sbjct: 708 QMLERRYTPYPNL 720

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Homo sapiens (taxid: 9606)

>sp|O35454|CLCN6_MOUSE Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 195/397 (49%), Gaps = 60/397 (15%)

Query: 13  EDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSV 72
           ED        +C +  YN +A L+    E ++  + H   G F   +L++F + YFLL+ 
Sbjct: 420 EDVNSTIKAFFCPNDTYNDMATLFFNSQESAILQLFHQ-DGTFSPVTLALFFILYFLLAC 478

Query: 73  WTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRM 132
           WT+G SV  G+F+P LL GAA+GRL +  L+S +     +  G +ALIGAAA LGGVVRM
Sbjct: 479 WTFGTSVPSGLFVPSLLCGAAFGRLVANVLKS-YIGLGHLYSGTFALIGAAAFLGGVVRM 537

Query: 133 TISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLS 192
           TISLT+ILIE+T  I++GLP+M+TL+ AKW GD F +G+YD+HI L G+PLL W+     
Sbjct: 538 TISLTVILIESTNEITYGLPIMVTLMVAKWTGDLFNKGIYDVHIGLRGVPLLEWETDVEM 597

Query: 193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSH-----------------NGFPIVDVE 235
             + A  +    +  + P   + +++ +L+ T H                  G  ++   
Sbjct: 598 DKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKGNQLISNN 657

Query: 236 PMTKHSS---DGAEQSSAGST-------------DSHKG--DTSHKRDSSHKGDASR--- 274
              K SS      EQ   G +             D H    + + K D   +    R   
Sbjct: 658 IKFKKSSILTRAGEQRKRGQSMKSYPSSELRNVCDEHVASEEPAEKEDLLQQMLERRYTP 717

Query: 275 ------------------KDSPGRLVGLILRSQLI-ILIKHKIYKENQNWPDD-QLSSEI 314
                             +  P    GL+LRSQL+ +L++   Y E+Q+     +LS   
Sbjct: 718 YPNLYPDQSPSEDWTMEERFRPLTFHGLVLRSQLVTLLVRGVCYSESQSSASQPRLSYAE 777

Query: 315 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
              +YPRYP ++DL ++  +    V +  +MN SPF+
Sbjct: 778 MAEDYPRYPDIHDLDLTLLNPRMIVDVTPYMNPSPFT 814

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Mus musculus (taxid: 10090)

>sp|Q9TT16|CLCN6_RABIT Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 22  MYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSG 81
            +C +  YN +A L+    E ++  + H   G F   +L++F V YFLL+ WTYG+SV  
Sbjct: 428 FFCPNDTYNDMATLFFNPQESAILQLFHQ-DGTFSPITLALFFVLYFLLACWTYGISVPS 486

Query: 82  GVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILI 141
           G+F+P LL GAA+GRL +  L+S +   + I  G ++LIGAAA LGGVVRMTISLT+ILI
Sbjct: 487 GLFVPSLLCGAAFGRLVANVLKS-YIGLSHIYSGTFSLIGAAALLGGVVRMTISLTVILI 545

Query: 142 EATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVK 201
           E+T  I++GLP+M+TL+ AKW GDFF +G+YDIH+ L G+PLL W+       + A  + 
Sbjct: 546 ESTNEITYGLPIMITLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETEVEMDKLRASDIM 605

Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTS 261
              +  + P   + +++ +L+ T H+ FP+V      +       Q  + +    K    
Sbjct: 606 EPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKGNQLISNNIKFKKSSIL 665

Query: 262 HKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPR 321
            +     +   S K  P         S+L  +    +  E     +D L  ++    Y  
Sbjct: 666 TRAGEQRRRSQSMKSYPS--------SELRNVCDEHVASEEPAEKEDLL-QQMLERRYTP 716

Query: 322 YPSV 325
           YP++
Sbjct: 717 YPNL 720

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q86AZ6|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 190/374 (50%), Gaps = 37/374 (9%)

Query: 5   IDDCRPL-------------GEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDP 51
           + DCRP+             G+D T    Q  C +G YN +A L L   E S++ +    
Sbjct: 401 LADCRPISGISGLTPGTCDPGDDSTLILNQFNCAEGYYNPMATLTLTTLENSLQIVFSRS 460

Query: 52  KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATW 111
              F   +L  F + Y++L++ T G+ V+ G+FIP +L G++WGRL  +FL   F   T 
Sbjct: 461 TNIFTAQTLLTFSIFYYVLTIITSGLYVASGIFIPMMLIGSSWGRLIGIFLSKYF---TS 517

Query: 112 IDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGL 171
           IDP  YALIGAA+ + G +RMTISL +I++E T    + LP++L+++  KW GD F E +
Sbjct: 518 IDPSIYALIGAASMMAGSLRMTISLVVIIVELTETTQYLLPVILSVMVGKWCGDIFNESI 577

Query: 172 YDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPI 231
           Y+  I+L  IP L   PP      T     S  V  L  +  V   + +L+   HNGFP+
Sbjct: 578 YEHLIELKHIPYLNSQPPNHLRKKTVAEAMSTDVKTLPEIVKVKTALTILETCPHNGFPV 637

Query: 232 VDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGR------LVGLI 285
           V +  +  HS+     S+  S   +  + ++  ++++  + +  ++         L GLI
Sbjct: 638 VMLPQL--HSNSNLNDSNQLSLSLNLNNNNNNNNNNNNNNNNNNNNNNNNNNNNILCGLI 695

Query: 286 LRSQLIILIKHKIYKENQNWPDDQLSSE------IFHAEY-----PRYPSVNDL--VVSE 332
           LRSQL +L++ KI+   ++  +    S+      I H E+      + P +++L  ++++
Sbjct: 696 LRSQLSVLLRRKIFNSPEDLKNIDFISDKGYNLPIDHTEFSQELASKIPPIHELSKLITK 755

Query: 333 NDRSFTVKLNLFMN 346
            D    + L  +MN
Sbjct: 756 EDLDMYIDLRPYMN 769

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54AX6|CLCA_DICDI Chloride channel protein A OS=Dictyostelium discoideum GN=clcA PE=2 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 159/301 (52%), Gaps = 32/301 (10%)

Query: 12  GEDPTEHA-VQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLL 70
           GED  E   +  +CE GEYN +A L     + ++R +       F + +L+VF +  F+L
Sbjct: 475 GEDKQEDKFIAFFCEQGEYNQMAGLSFNSLDAALRLLFSTSTDIFTIPTLAVFSLISFIL 534

Query: 71  SVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVV 130
           +  T G+ ++ G+FIP +L GA +GRL    +  +      +DP  YAL+GA+A + G  
Sbjct: 535 TTITSGLMLASGLFIPMMLVGATFGRL----VGQVIALFVSVDPCIYALVGASAMMAGFS 590

Query: 131 RMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPP 190
           RMTISL II++E T    + LP++L+++ AKW+GDFF E +Y+  I+    P L   PP 
Sbjct: 591 RMTISLAIIMVELTEGTQYMLPVILSVMIAKWVGDFFNESIYEHLIEQKCYPFLQSQPPK 650

Query: 191 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVDV-EPMTKHSSDGAEQ 247
               +    +    V+ L  +E V  +I+VLK+    HNGFP+++   P+     D   +
Sbjct: 651 SMIKLGVVDIMKTEVVTLHEVERVSKVIEVLKSEQHFHNGFPVIERPRPL-----DPNRK 705

Query: 248 SSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPD 307
            + G+ + ++ +T++                    GLILR+QLI L+ ++I+   Q  P 
Sbjct: 706 DAYGNLEYYEDETTYS-------------------GLILRNQLICLLYYRIFCHEQPLPQ 746

Query: 308 D 308
           +
Sbjct: 747 N 747

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|P92942|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 57/344 (16%)

Query: 21  QMYCEDGEYNTLAALWLQVPEKSVRTMLH-DPKGAFGVFSLSVFVVTYFLLSVWTYGVSV 79
           Q +C  G YN LA L L   + +VR +   +    FG+ SL +F V Y +L ++T+G++ 
Sbjct: 415 QFHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIAT 474

Query: 80  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 139
             G+F+P +L GAA+GR+    + S     T ID G YA++GAAA + G +RMT+SL +I
Sbjct: 475 PSGLFLPIILMGAAYGRMLGAAMGSY----TSIDQGLYAVLGAAALMAGSMRMTVSLCVI 530

Query: 140 LIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARI 199
            +E T N+      M+ L+ AK +GD F   +YDI + L G+P L  +P P   N+T   
Sbjct: 531 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGE 590

Query: 200 VKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHK 257
           +     PV+ L+ +E V NI+DVLK T+HN FP++D   + +         + G+T+ H 
Sbjct: 591 LGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVG------LATGATELH- 643

Query: 258 GDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIY----KENQNW------PD 307
                                    GLILR+ L+ ++K + +    +  + W      P 
Sbjct: 644 -------------------------GLILRAHLVKVLKKRWFLTEKRRTEEWEVREKFPW 678

Query: 308 DQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           D+L+         R  + +D+ ++  +    V L+   NT+P++
Sbjct: 679 DELAE--------REDNFDDVAITSAEMEMYVDLHPLTNTTPYT 714

Voltage-gated chloride channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
307201523	805	Chloride channel protein 7 [Harpegnathos	0.903	0.395	0.515	1e-103
328785199	807	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.394	0.521	1e-102
380021098	805	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.395	0.518	1e-102
340725063	803	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.396	0.498	1e-101
350398489	802	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.396	0.501	1e-101
328709438	759	PREDICTED: H(+)/Cl(-) exchange transport	0.880	0.408	0.534	1e-101
383865255	806	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.394	0.507	1e-100
383865253	809	PREDICTED: H(+)/Cl(-) exchange transport	0.903	0.393	0.507	1e-100
322796366	775	hypothetical protein SINV_06598 [Solenop	0.903	0.410	0.512	1e-100
91089729	782	PREDICTED: similar to chloride channel p	0.900	0.405	0.515	1e-94

>gi|307201523|gb|EFN81286.1| Chloride channel protein 7 [Harpegnathos saltator]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/351 (51%), Positives = 243/351 (69%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY IDDC+PLG+DPT++ VQMYC+ GEYN +A+LW Q PE SVR++ HDPKG+    +L
Sbjct: 425 MIYFIDDCKPLGKDPTKYPVQMYCKSGEYNAVASLWFQTPESSVRSLFHDPKGSHNDMTL 484

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FVV YF L+  T+G+S+S G+FIP LL G+AWGRL    L  ++P    +DPGKYAL+
Sbjct: 485 AIFVVLYFFLAASTFGLSMSSGLFIPSLLIGSAWGRLIGSGLSKLWPNCVVLDPGKYALL 544

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 545 GAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWVGDFFNEGIYDIHTQMAG 604

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IPL+ W+PPPLSSNI A  + SHPV+ LR +E VG+I+++LK  + NGFP+VD       
Sbjct: 605 IPLIPWEPPPLSSNIYASEIMSHPVVTLRTVENVGHIVELLKCVTFNGFPVVD------- 657

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
                                         D S  ++ GR  GLILRSQLI+L+++KI+ 
Sbjct: 658 --------------------------PPSSDQSEINTYGRFRGLILRSQLIVLLQNKIFN 691

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           E   + D  L  +IF  EYPRYP++  +VV+E ++++T+ L  FMN +P++
Sbjct: 692 EYAEFWDKSLDIKIFRKEYPRYPTIEQVVVTEEEKTYTIDLRHFMNPAPYT 742

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785199|ref|XP_396520.3| PREDICTED: H(+)/Cl(-) exchange transporter 7 [Apis mellifera]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/351 (52%), Positives = 246/351 (70%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY + DC+PLG+DPT+  +QMYC DGEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 427 MIYCLKDCKPLGQDPTKFPIQMYCNDGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITL 486

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FVV YFLL+V T+G+S+S G+FIP LL GAAWGRL    L  +FP    ++PGKYAL+
Sbjct: 487 AIFVVLYFLLAVATFGLSMSSGLFIPSLLIGAAWGRLIGSGLSRLFPNCVVLNPGKYALL 546

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 547 GAAAQLGGVVRMTISLTAILIEATQGISFGLPLIIVLIMAKWVGDFFNEGIYDIHTQMAG 606

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+L W+ PPLS+NI A  + SHP++ L+ +E VG+II++LK  + NGFP+VD       
Sbjct: 607 IPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIIELLKCVTFNGFPVVD-----PP 661

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
           SSD  E  S G                            R  GLILRSQLI+L+++KI+ 
Sbjct: 662 SSDEIEIHSYG----------------------------RFRGLILRSQLIVLLQNKIFN 693

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           +N ++ D  LS +IF  EYPRYP+++ + V++ ++++T+ L  FMN SP++
Sbjct: 694 KNLDYWDRSLSIKIFRKEYPRYPTIDQVTVTDEEKTYTIDLRPFMNPSPYT 744

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021098|ref|XP_003694411.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Apis florea]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/351 (51%), Positives = 245/351 (69%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY + DC+PLG+DPT+  +QMYC DGEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 425 MIYCLKDCKPLGQDPTKFPIQMYCNDGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITL 484

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FV+ YFLL+V T+G+S+S G+FIP LL GAAWGRL    L  +FP    ++PGKYAL+
Sbjct: 485 AIFVILYFLLAVATFGLSMSSGLFIPSLLIGAAWGRLIGSGLSRLFPNCVVLNPGKYALL 544

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 545 GAAAQLGGVVRMTISLTAILIEATQGISFGLPLIIVLIMAKWVGDFFNEGIYDIHTQMAG 604

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+L W+ PPLS+NI A  + SHP++ L+ +E VG+II++LK  + NGFP+VD       
Sbjct: 605 IPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIIELLKCVTFNGFPVVD-----PP 659

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
           SSD  E  S G                            R  GLILRSQLI+L+++KI+ 
Sbjct: 660 SSDEIEIHSYG----------------------------RFRGLILRSQLIVLLQNKIFN 691

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           +N ++ D  LS +IF  EYPRYP+++ + V+E ++++ + L  FMN SP++
Sbjct: 692 KNLDYWDRSLSIKIFRKEYPRYPTIDQVTVTEEEKTYMIDLRPFMNPSPYT 742

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725063|ref|XP_003400894.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Bombus terrestris]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/351 (49%), Positives = 242/351 (68%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY ++DC+PLG+DPT+  +QMYC++GEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 423 MIYFLNDCKPLGQDPTKFPIQMYCKEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITL 482

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FVV YF L+V T+G+S+S G+FIP LL G+AWGRL    L  +FP    +DPGKYAL+
Sbjct: 483 AIFVVLYFFLAVATFGLSMSSGLFIPSLLIGSAWGRLIGSGLAKVFPNCVVLDPGKYALL 542

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 543 GAAAQLGGVVRMTISLTAILIEATQGISFGLPLIVVLIMAKWVGDFFNEGIYDIHTQMAG 602

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+L W+ PPLS+NI A  + SHP++ L+ +E VG+I+++LK  + NGFP+VD       
Sbjct: 603 IPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIVELLKCVTFNGFPVVD------- 655

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
                                         D +   S GR  GLILRSQLI+L+++KI+ 
Sbjct: 656 --------------------------PPNSDETEIHSYGRFRGLILRSQLIVLLQNKIFN 689

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
            N  + +  LS ++F  EYPRYP+++ + +SE ++++ + L  FMN SP++
Sbjct: 690 RNLEYWEKSLSVKLFRKEYPRYPTIDQVTISEEEKTYMIDLRPFMNPSPYT 740

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398489|ref|XP_003485207.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Bombus impatiens]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/351 (50%), Positives = 241/351 (68%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY ++DC+PLG DPT+  +QMYC++GEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 422 MIYFLNDCKPLGRDPTKFPIQMYCKEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITL 481

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FVV YF L+V T+G+S+S G+FIP LL G+AWGRL    L  IFP    +DPGKYAL+
Sbjct: 482 AIFVVLYFFLAVATFGLSMSSGLFIPSLLIGSAWGRLIGSGLAKIFPNCVVLDPGKYALL 541

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 542 GAAAQLGGVVRMTISLTAILIEATQGISFGLPLIVVLIMAKWVGDFFNEGIYDIHTQMAG 601

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+L W+ PPLS+NI A  + SHP++ L+ +E VG+I+++LK  + NGFP+VD       
Sbjct: 602 IPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIVELLKCVTFNGFPVVD------- 654

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
                                         D +   S GR  GLILRSQLI+L+++KI+ 
Sbjct: 655 --------------------------PPNSDETEIHSYGRFRGLILRSQLIVLLQNKIFN 688

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
            N  + +  LS ++F  EYPRYP+++ + +SE ++++ + L  FMN SP++
Sbjct: 689 RNLEYWEKSLSIKLFRKEYPRYPTIDQVTISEEEKTYMIDLRPFMNPSPYT 739

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709438|ref|XP_001952257.2| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Acyrthosiphon pisum]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/346 (53%), Positives = 242/346 (69%), Gaps = 36/346 (10%)

Query: 6   DDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVV 65
           +DC+PLG DPT++ VQ+ C DGEYN++A+LWLQVPE SVR+  HDP  +    +L  F +
Sbjct: 385 NDCKPLGLDPTKNPVQLNCNDGEYNSMASLWLQVPEASVRSFFHDPTESLDATTLVYFAI 444

Query: 66  TYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQ 125
           +++LL+ WTYG+SVS G+FIPCL TGAAWGRL  L +Q +FP    ID GKYAL+GAA+Q
Sbjct: 445 SFYLLTTWTYGLSVSAGLFIPCLATGAAWGRLIGLGVQCVFPN---IDVGKYALVGAASQ 501

Query: 126 LGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLA 185
           LGG VRMTISLT+ILIEATG+I+FGLPLM+ L+TAKWIGD+FTE +YD+HIQLSGIPL+A
Sbjct: 502 LGGAVRMTISLTVILIEATGDITFGLPLMICLLTAKWIGDYFTESIYDVHIQLSGIPLMA 561

Query: 186 WDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGA 245
           WDPPPLSSNI A  V SHPV   +  E+VG I+D LK  ++NGFP+VD            
Sbjct: 562 WDPPPLSSNIYASEVMSHPVTVFKSKESVGQIVDTLKKYTYNGFPVVD------------ 609

Query: 246 EQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKE-NQN 304
                 ST++  G+                 S GRL GLILRSQLI+L+++K++ E    
Sbjct: 610 ---DVFSTETEGGNNK---------------SNGRLRGLILRSQLIVLLQNKVFNEIPSA 651

Query: 305 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 350
           W  D +S   F  +YPRY +++++ V +N+R +TV L  FMN SP+
Sbjct: 652 W--DNVSLTTFRKDYPRYSNIDNIEVLDNERQYTVDLLRFMNPSPY 695

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865255|ref|XP_003708090.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like isoform 2 [Megachile rotundata]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/351 (50%), Positives = 243/351 (69%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY I+DC+PLG+DPT+  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 426 MIYFINDCKPLGKDPTKFPIQMYCNEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDLTL 485

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FV+ YF L+V T+G+S+S G+FIP LL G+AWGRL    L  +FP    + PGKYAL+
Sbjct: 486 AIFVILYFFLAVATFGLSMSSGLFIPSLLIGSAWGRLIGSGLTRLFPNCIVLVPGKYALL 545

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 546 GAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWVGDFFNEGIYDIHTQMAG 605

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+LAW+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK  + NGFP+VD       
Sbjct: 606 IPILAWEAPPLSNNIYASEIMSHPVVTLKTVENVGHILELLKCVTFNGFPVVD-----PP 660

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
           SSD  E                             +S GR  GLILRSQLI+L+++KI+ 
Sbjct: 661 SSDETEI----------------------------NSYGRFRGLILRSQLIVLLQNKIFN 692

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           E   + +  LS ++F  EYPRYP++  + +SE ++++ + L  FMN SP++
Sbjct: 693 EYAEYWEKSLSIKMFRKEYPRYPTIEQVTISEEEKTYMIDLRPFMNPSPYT 743

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865253|ref|XP_003708089.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like isoform 1 [Megachile rotundata]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/351 (50%), Positives = 243/351 (69%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY I+DC+PLG+DPT+  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L
Sbjct: 429 MIYFINDCKPLGKDPTKFPIQMYCNEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDLTL 488

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FV+ YF L+V T+G+S+S G+FIP LL G+AWGRL    L  +FP    + PGKYAL+
Sbjct: 489 AIFVILYFFLAVATFGLSMSSGLFIPSLLIGSAWGRLIGSGLTRLFPNCIVLVPGKYALL 548

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+GDFF EG+YDIH Q++G
Sbjct: 549 GAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWVGDFFNEGIYDIHTQMAG 608

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IP+LAW+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK  + NGFP+VD       
Sbjct: 609 IPILAWEAPPLSNNIYASEIMSHPVVTLKTVENVGHILELLKCVTFNGFPVVD-----PP 663

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
           SSD  E                             +S GR  GLILRSQLI+L+++KI+ 
Sbjct: 664 SSDETEI----------------------------NSYGRFRGLILRSQLIVLLQNKIFN 695

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           E   + +  LS ++F  EYPRYP++  + +SE ++++ + L  FMN SP++
Sbjct: 696 EYAEYWEKSLSIKMFRKEYPRYPTIEQVTISEEEKTYMIDLRPFMNPSPYT 746

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796366|gb|EFZ18907.1| hypothetical protein SINV_06598 [Solenopsis invicta]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/351 (51%), Positives = 242/351 (68%), Gaps = 33/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           MIY ++DC+PLG DPT+  VQMYC +GEYN +A+LW Q PE SVR++ HDPKGA    +L
Sbjct: 395 MIYFVNDCKPLGNDPTKFPVQMYCAEGEYNAVASLWFQTPESSVRSLFHDPKGAHDDLTL 454

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           ++FVV YF L+  T+G+S+S G+FIP LL G+AWGRL    L  + P    +DPGKYAL+
Sbjct: 455 AIFVVLYFFLAATTFGLSMSSGLFIPSLLIGSAWGRLIGSGLAKLCPNCEVLDPGKYALL 514

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT ILIEAT  I FGLP+++ LI AKW+GDFF EG+YDIHIQ++G
Sbjct: 515 GAAAQLGGVVRMTISLTAILIEATQGIYFGLPVIIVLIMAKWVGDFFNEGIYDIHIQMAG 574

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           IPLL W+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK  + NGFP+VD       
Sbjct: 575 IPLLPWESPPLSNNIYATEIMSHPVVALKTVENVGHIVELLKCVTFNGFPVVD-----PP 629

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
           SSD AE  S                             GRL GLILRSQLI+L+K+K++ 
Sbjct: 630 SSDQAEIISY----------------------------GRLRGLILRSQLIVLLKNKVFN 661

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           E + + +  L+  +F  EYPRYP++  + +++ ++++TV L  FMN SP++
Sbjct: 662 EYEEFWEKPLTINMFRNEYPRYPTIEQVAITDEEKTYTVDLRHFMNPSPYT 712

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089729|ref|XP_975072.1| PREDICTED: similar to chloride channel protein 7 [Tribolium castaneum] gi|270011308|gb|EFA07756.1| hypothetical protein TcasGA2_TC005310 [Tribolium castaneum]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 181/351 (51%), Positives = 247/351 (70%), Gaps = 34/351 (9%)

Query: 1   MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
           M++ ++DC+PLG+DPT++  Q+YC+DG+YN LA++W Q PE SVR++ HDP       SL
Sbjct: 403 MMFLLNDCKPLGQDPTKYPTQLYCQDGQYNVLASIWFQTPEASVRSLFHDPPSTHNATSL 462

Query: 61  SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
           + FV+ YF LS WT+G++ S G+FIP LLTGAAWGRL S+ L  + P+A  I PGKYALI
Sbjct: 463 AFFVLVYFFLSSWTFGLASSNGLFIPTLLTGAAWGRLISVGLFRVIPDAVLIHPGKYALI 522

Query: 121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
           GAAAQLGGVVRMTISLT+I++E TGNISF LPL+LTLI AKW GDFF EG+YD  IQLSG
Sbjct: 523 GAAAQLGGVVRMTISLTVIIMETTGNISFALPLILTLIAAKWTGDFFNEGIYDTLIQLSG 582

Query: 181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH 240
           +PLL W+PPPL  NI A  V SHPV+ L+ +E VG+I+++LK T++NGFP+VD  P+T  
Sbjct: 583 VPLLPWEPPPLVHNIYASEVMSHPVVTLKCVENVGHIVELLKLTTYNGFPVVD-PPLT-- 639

Query: 241 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYK 300
                                         D S   + GR+ GL+LRSQLI+++K KI+ 
Sbjct: 640 ------------------------------DQSEVTTYGRIRGLVLRSQLIVILKKKIFN 669

Query: 301 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
           EN ++ +D +++ IF  EYPRYP++  + VSE ++++++ L  FMN SP++
Sbjct: 670 ENSDFWED-INAGIFRDEYPRYPTIEQVSVSEVEKTYSIDLRPFMNPSPYT 719

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
ZFIN|ZDB-GENE-061103-196	795	clcn7 "chloride channel 7" [Da	0.659	0.291	0.576	1.5e-87
FB|FBgn0033755	813	ClC-b "Chloride channel-b" [Dr	0.661	0.286	0.538	1.9e-83
WB|WBGene00000533	796	clh-6 [Caenorhabditis elegans	0.659	0.291	0.557	2.8e-78
UNIPROTKB|F1NS73	802	CLCN7 "Uncharacterized protein	0.676	0.296	0.537	1.1e-71
UNIPROTKB|F1RG09	809	LOC100626534 "Uncharacterized	0.661	0.288	0.561	3.7e-71
MGI|MGI:1347048	803	Clcn7 "chloride channel 7" [Mu	0.661	0.290	0.553	2.1e-70
UNIPROTKB|E2R0Q0	747	CLCN7 "Uncharacterized protein	0.664	0.313	0.546	2.1e-70
UNIPROTKB|H0Y2M6	901	CLCN7 "Chloride channel 7, iso	0.661	0.258	0.553	2.6e-70
UNIPROTKB|P51798	805	CLCN7 "H(+)/Cl(-) exchange tra	0.661	0.289	0.553	2.6e-70
RGD|61836	803	Clcn7 "chloride channel, volta	0.661	0.290	0.548	3.3e-70

ZFIN|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)]

 Score = 735 (263.8 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 136/236 (57%), Positives = 175/236 (74%)

Query:     1 MIYSIDDCRPLGEDPTE-HAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFS 59
             MIY   +C+PLG D TE + +Q++C DGEYN +A  +   PE+SVR++ H+P G +   +
Sbjct:   418 MIYFSTECQPLGPDHTEEYPLQLFCADGEYNAMATAFFNTPERSVRSLFHNPPGTYNPMT 477

Query:    60 LSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWIDPGKYA 118
             L VF + YFLL+VWTYG++VS GVFIP LL GAAWGRLF + L  I   ++ W DPGKYA
Sbjct:   478 LGVFTLAYFLLAVWTYGLTVSAGVFIPSLLIGAAWGRLFGILLSFITTSKSIWADPGKYA 537

Query:   119 LIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQL 178
             LIGAAAQLGG+VRMT+SLT+IL+EATGN+++G P+ML L+TAK +GD+F EGLYDIHI+L
Sbjct:   538 LIGAAAQLGGIVRMTLSLTVILVEATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDIHIKL 597

Query:   179 SGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIV 232
               +P L W+ PP S  +TAR V S  V C   +E VG I+DVL  TS  HNGFP+V
Sbjct:   598 QSVPFLHWEAPPTSHWLTAREVMSSQVTCFNRIEKVGTIVDVLSNTSTNHNGFPVV 653

GO:0005216 "ion channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033755 ClC-b "Chloride channel-b" [Drosophila melanogaster (taxid:7227)]

 Score = 709 (254.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 126/234 (53%), Positives = 174/234 (74%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             MIY I+DCRPLG DPT + VQ++CED EYN +AALW Q PE +VR++ HDP G+  + +L
Sbjct:   455 MIYFINDCRPLGNDPTNNPVQLFCEDNEYNAVAALWFQTPEATVRSLFHDPPGSHKILTL 514

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
             ++F V Y++LS  T+G++VS GVFIP  L GAAWGRL ++    +FP+A ++ PGKYALI
Sbjct:   515 ALFTVVYYVLSCATFGLNVSLGVFIPTALVGAAWGRLLAMLTYYVFPQAEFLHPGKYALI 574

Query:   121 GAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLS 179
             GAAA LGGV+RMTISL++IL+E TG   SF  PL++ LI+AKW+GD+F EG+YD  IQ++
Sbjct:   575 GAAANLGGVLRMTISLSVILMETTGVETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVN 634

Query:   180 GIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
              +P+L W+P P    + AR + S PVIC++  ++   I ++LK   HNGFP+VD
Sbjct:   635 HVPMLTWEPLPQYKGLKAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVD 688

GO:0005254 "chloride channel activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0050975 "sensory perception of touch" evidence=IMP

WB|WBGene00000533 clh-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 731 (262.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 131/235 (55%), Positives = 179/235 (76%)

Query:     2 IYSIDDCRPLGEDPTEHAVQ---MYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVF 58
             I++IDDC+P+G +PT  + Q   M+C+ GEY+ +A+L+ Q PE+SV++M H P  +FGV 
Sbjct:   413 IFAIDDCQPIGANPTATSTQINQMWCKKGEYSAVASLFFQNPEESVKSMFHSPINSFGVT 472

Query:    59 SLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA 118
             +L +F + YFLL++WT+G+SV  GVFIP +LTGAAWGRLF +F++ +FP  T IDPGKYA
Sbjct:   473 TLVIFGIEYFLLTLWTFGISVPSGVFIPAILTGAAWGRLFGIFVERLFPSVTGIDPGKYA 532

Query:   119 LIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQL 178
             L GAAAQLGGVVRMTISLT I++EAT +I+FGLP+ML L+  KW+GD F EGLYD HI L
Sbjct:   533 LAGAAAQLGGVVRMTISLTAIIMEATKDITFGLPIMLVLMVTKWVGDMFNEGLYDAHIDL 592

Query:   179 SGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 233
             + +P+L W+PP +S NI A  V    V+ L   E V  I+++L++T H+GFP+VD
Sbjct:   593 AEVPILGWNPPKMSRNILADRVMRKDVVALERRERVSRIVEILRSTLHHGFPVVD 647

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NS73 CLCN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 129/240 (53%), Positives = 174/240 (72%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             MIY   DC+P+      + +Q++C DGEYN++A  +   PEKSV  + HDP G++   +L
Sbjct:   427 MIYCSRDCQPIQGSSVAYPLQLFCADGEYNSMATAFFNTPEKSVVNLFHDPPGSYNPMTL 486

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   + W DPGKYAL+
Sbjct:   487 GMFTLMYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLSKGSIWADPGKYALM 546

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EATGN+++G P+ML L+TAK +GD+F EGLYD+HIQL  
Sbjct:   547 GAAAQLGGIVRMTLSLTVIMMEATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDMHIQLQS 606

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVDVEPMT 238
             +P L W+ P  S ++TAR V S PV CLR +E VG ++D+L  TS  HNGFP+V+  P T
Sbjct:   607 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRIERVGTVVDILSDTSSNHNGFPVVESNPNT 666

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 132/235 (56%), Positives = 173/235 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   435 LIYSSRDCQPLQGSSVSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 494

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  I   A W DPGKYAL+
Sbjct:   495 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAIWADPGKYALM 554

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   555 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 614

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 233
             +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+VD
Sbjct:   615 VPFLHWEAPVTSHSLTAREVMSAPVTCLRRREKVGVIVDVLSNSASNHNGFPVVD 669

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

MGI|MGI:1347048 Clcn7 "chloride channel 7" [Mus musculus (taxid:10090)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 130/235 (55%), Positives = 173/235 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   429 LIYSSRDCQPLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 488

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct:   489 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 548

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   549 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 608

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 233
             +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   609 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE 663

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0009268 "response to pH" evidence=ISO

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2R0Q0 CLCN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 129/236 (54%), Positives = 173/236 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   373 LIYSSRDCQPLQGSSVSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 432

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct:   433 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 492

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   493 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDIFIEGLYDMHIQLQS 552

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVDV 234
             +P L W+ P  S ++TAR V S PV CLR  E VG I+D+L  T+  HNGFP+V++
Sbjct:   553 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDILSDTTSNHNGFPVVEL 608

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

UNIPROTKB|H0Y2M6 CLCN7 "Chloride channel 7, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 130/235 (55%), Positives = 173/235 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   407 LIYSSRDCQPLQGGSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPLTL 466

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct:   467 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 526

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   527 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 586

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 233
             +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   587 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVE 641

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|P51798 CLCN7 "H(+)/Cl(-) exchange transporter 7" [Homo sapiens (taxid:9606)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 130/235 (55%), Positives = 173/235 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   431 LIYSSRDCQPLQGGSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPLTL 490

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+
Sbjct:   491 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALM 550

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   551 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 610

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 233
             +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   611 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVE 665

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009268 "response to pH" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=TAS

GO:0006810 "transport" evidence=TAS

RGD|61836 Clcn7 "chloride channel, voltage-sensitive 7" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 129/235 (54%), Positives = 173/235 (73%)

Query:     1 MIYSIDDCRPLGEDPTEHAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSL 60
             +IYS  DC+PL      + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L
Sbjct:   429 LIYSSRDCQPLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTL 488

Query:    61 SVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI 120
              +F + YF L+ WTYG++VS GVFIP LL GAAWGRLF + +  +   A W DPGKYAL+
Sbjct:   489 GLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALM 548

Query:   121 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSG 180
             GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  
Sbjct:   549 GAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQS 608

Query:   181 IPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 233
             +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   609 VPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE 663

GO:0003674 "molecular_function" evidence=ND

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0009268 "response to pH" evidence=IDA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	352
cd03685	466	cd03685, ClC_6_like, ClC-6-like chloride channel p	3e-63
cd01036	416	cd01036, ClC_euk, Chloride channel, ClC	5e-38
cd03684	445	cd03684, ClC_3_like, ClC-3-like chloride channel p	2e-31
pfam00654	345	pfam00654, Voltage_CLC, Voltage gated chloride cha	1e-28
cd03683	426	cd03683, ClC_1_like, ClC-1-like chloride channel p	4e-24
cd00400	383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	1e-16
COG0038	443	COG0038, EriC, Chloride channel protein EriC [Inor	4e-16
cd01031	402	cd01031, EriC, ClC chloride channel EriC	8e-13
PRK05277	438	PRK05277, PRK05277, chloride channel protein; Prov	8e-11
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	3e-09
cd01034	390	cd01034, EriC_like, ClC chloride channel family	1e-08
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	2e-05
cd01033	388	cd01033, ClC_like, Putative ClC chloride channel	0.003

>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins

 Score =  208 bits (531), Expect = 3e-63
 Identities = 71/126 (56%), Positives = 96/126 (76%), Gaps = 1/126 (0%)

Query: 59  SLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA 118
           +L +F V Y+ L+ WT+G++V  G+FIP +L GAA+GRL  + L S F   T IDPG YA
Sbjct: 335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYF-GFTSIDPGLYA 393

Query: 119 LIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQL 178
           L+GAAA LGGV+RMT+SLT+IL+E T N+++  P+ML L+ AKW+GD+F EG+YDI IQL
Sbjct: 394 LLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQL 453

Query: 179 SGIPLL 184
            G+P L
Sbjct: 454 KGVPFL 459

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466

>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC

 Score =  140 bits (354), Expect = 5e-38
 Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 7/122 (5%)

Query: 59  SLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPE-------ATW 111
           +L +F++ YF +S   +G++V GG FIP L+ GAA GRL  L +  I            W
Sbjct: 295 TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLW 354

Query: 112 IDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGL 171
            DPG YALIGAAA LGG  R+T S+ +I++E TG++   LPLM+ ++ AK + D F E L
Sbjct: 355 ADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESL 414

Query: 172 YD 173
           Y 
Sbjct: 415 YH 416

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416

>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins

 Score =  123 bits (310), Expect = 2e-31
 Identities = 54/142 (38%), Positives = 92/142 (64%), Gaps = 14/142 (9%)

Query: 57  VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSI---FPEATW-- 111
           ++SL + ++   LL+++T+G+ V  G+F+P +  GA +GR+  + ++ +   +P++ +  
Sbjct: 304 LWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFA 363

Query: 112 --------IDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 163
                   I PG YA++GAAA LGGV RMT+SL +I+ E TG +++ LPLM+ ++ +KW+
Sbjct: 364 CCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWV 423

Query: 164 GDFFT-EGLYDIHIQLSGIPLL 184
            D    EG+YD HI L+G P L
Sbjct: 424 ADAIGKEGIYDAHIHLNGYPFL 445

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445

>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel

 Score =  113 bits (285), Expect = 1e-28
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 44  VRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQ 103
           ++ +L+       +  L + ++   L +  + G    GG+F P L  GAA GRL  L L 
Sbjct: 226 IQLLLNG--STLSLLLLLLLLLLKLLATALSLGSGAPGGIFAPSLFIGAALGRLLGLLLP 283

Query: 104 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 163
            +FP      PG +AL+G AA L GV R  ++  +++ E TG+ S  LPLML ++ A  +
Sbjct: 284 LLFPG-IAPSPGAFALLGMAAFLAGVTRAPLTAIVLVFELTGSYSLLLPLMLAVLIAYLV 342

Query: 164 GDF 166
              
Sbjct: 343 SRL 345

This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains. Length = 345

>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins

 Score =  101 bits (255), Expect = 4e-24
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 7/136 (5%)

Query: 55  FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATW--- 111
           F   +L +F+V  F+L+     + V  G+F+P  + GAA GRL    +  +FPE      
Sbjct: 290 FPFLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGI 349

Query: 112 ---IDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT 168
              I PG YA++GAAA  G V   T+S+ +I+ E TG IS  LP+++ ++ +  +  F  
Sbjct: 350 SNPIGPGGYAVVGAAAFSGAVTH-TVSVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQ 408

Query: 169 EGLYDIHIQLSGIPLL 184
             +YD  I++  +P L
Sbjct: 409 PSIYDSIIKIKKLPYL 424

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426

>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 46  TMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSI 105
            +L    G   +  L + ++   L +  T G    GGVF P L  GAA G  F L L ++
Sbjct: 269 AILLALAGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPAL 328

Query: 106 FPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITA 160
           FP      PG YAL+G AA L  V+R  ++  ++++E TG+ S  LPLML ++ A
Sbjct: 329 FPGLV-ASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIA 382

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383

>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 55  FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP 114
            G+  L +  +   L ++ +YG    GG+F P L  GAA G  F   L  +FP  + ++P
Sbjct: 307 GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFP-PSILEP 365

Query: 115 GKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGD-FFTEGLYD 173
           G +AL+G AA L    R  ++  ++++E TGN    LPL++  + A  +        +Y 
Sbjct: 366 GLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYT 425

Query: 174 IHIQLSGIPLL 184
             +   G P+L
Sbjct: 426 QLLARRGAPIL 436

Length = 443

>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC

 Score = 68.7 bits (169), Expect = 8e-13
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 56  GVFSLSVFVVTYFLLSVWT---YGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
           G FS+S+ ++ + L  ++T   YG    GG+F P L  GA  G LF   L  + P     
Sbjct: 278 GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPI-S 336

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITA 160
            P  +A+ G AA    VVR  I+  I++ E TGN +  LPLM+  + A
Sbjct: 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVA 384

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. Length = 402

>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 56  GVFSLSV---FVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
           G FS+ +     V  F+ ++  +G    GG+F P L  G   G  F +   ++FP+   I
Sbjct: 291 GNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYH-I 349

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITA 160
           +PG +A+ G  A     VR  ++  ++++E T N    LPL++T + A
Sbjct: 350 EPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGA 397

Length = 438

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 44  VRTMLHDPKGAFGVFSLSVFVVTYFLL--SVWTYGVSVSGGVFIPCLLTGAAWGRLFSLF 101
           V T+LH P         ++  V    L  +  T G    GGVF P L  GA  G LF L 
Sbjct: 303 VNTILHAP-----WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA 357

Query: 102 LQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLI--- 158
           + +++P  T   P  YA++G  A L G  +  +   +++ E T +    LPLM++ +   
Sbjct: 358 MHALWPGHT-SAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAY 416

Query: 159 -TAKWIGDFFTEGLYDI 174
            TA+ +G   T  +Y+I
Sbjct: 417 FTARALG---TTSMYEI 430

Length = 574

>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 63  FVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGA 122
           F +  FL ++ +Y   + GG+F P L  GA  G L +  L S+         G   L+G 
Sbjct: 286 FGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGSV-------SQGALVLLGM 338

Query: 123 AAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYD 173
           AA L GV +  ++  +I++E TG+    LPL+   + A  +      E LY 
Sbjct: 339 AAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 40/97 (41%)

Query: 202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTS 261
              V+ L    TV ++  +L  TSHNGFP+VD                            
Sbjct: 1   VPLVVLLPEGMTVEDLESLLSTTSHNGFPVVD---------------------------- 32

Query: 262 HKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI 298
                         +   RLVG ILRSQL++ +K+ I
Sbjct: 33  ------------STEESPRLVGYILRSQLVVALKNYI 57

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 69  LLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGG 128
           + ++        GG+  P L  GA  G L  +   ++ P  +      +ALIGAAA L  
Sbjct: 290 VATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSI---AAFALIGAAAFLAA 346

Query: 129 VVRMTISLTIILIEATG-NISFGLPLML 155
             +  ++  I+++E T  N  F +PLML
Sbjct: 347 TQKAPLTALILVLEFTRQNPLFLIPLML 374

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG0474|consensus	762		100.0
KOG0475|consensus	696		100.0
PRK01862	574	putative voltage-gated ClC-type chloride channel C	100.0
KOG0476|consensus	931		100.0
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	99.95
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	99.95
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	99.93
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.93
PRK01610	418	putative voltage-gated ClC-type chloride channel C	99.93
PRK05277	438	chloride channel protein; Provisional	99.92
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	99.91
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	99.91
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	99.9
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	99.89
cd01034	390	EriC_like ClC chloride channel family. These prote	99.87
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.83
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	99.81
PRK03655	414	putative ion channel protein; Provisional	99.73
COG4109	432	Predicted transcriptional regulator containing CBS	99.44
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.34
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.32
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.19
COG2524	294	Predicted transcriptional regulator, contains C-te	99.17
PRK05277	438	chloride channel protein; Provisional	99.12
COG3620	187	Predicted transcriptional regulator with C-termina	99.04
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	98.99
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.98
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.87
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	98.84
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	98.84
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.83
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.76
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	98.68
PRK01610	418	putative voltage-gated ClC-type chloride channel C	98.66
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	98.64
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	98.63
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	98.62
cd01034	390	EriC_like ClC chloride channel family. These prote	98.6
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.5
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.38
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.31
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.3
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	98.28
PRK03655	414	putative ion channel protein; Provisional	98.24
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.22
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.21
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.21
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.04
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.04
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.03
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.01
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.98
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.98
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.98
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.92
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.89
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.89
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.89
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.89
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.88
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.88
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.88
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.85
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.85
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.84
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.83
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.82
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.82
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.82
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.82
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.81
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.81
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.81
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.8
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.8
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.79
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.79
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.79
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.79
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.78
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.77
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.77
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.76
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.75
COG0517	117	FOG: CBS domain [General function prediction only]	97.75
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.74
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.74
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.74
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.72
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.7
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.69
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.69
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.69
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.68
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.67
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.67
COG2905	610	Predicted signal-transduction protein containing c	97.67
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.66
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.65
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.65
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.63
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.62
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.61
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.61
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.6
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.6
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.59
PRK11573	413	hypothetical protein; Provisional	97.58
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.58
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.56
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.55
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.55
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.53
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.52
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.52
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.51
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.49
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.45
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.43
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.43
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.43
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.41
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.4
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.37
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.36
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.34
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.33
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.31
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.31
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.28
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.26
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.23
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.23
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.2
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.17
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.17
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.16
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.16
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.16
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.14
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.14
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.14
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.13
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.12
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.1
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.1
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.09
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.07
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.06
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.04
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.04
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.03
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.01
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	96.98
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.96
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.96
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.95
COG0517	117	FOG: CBS domain [General function prediction only]	96.94
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	96.92
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.9
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	96.8
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.78
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.77
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.76
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.73
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	96.73
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.7
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.69
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.65
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.6
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.59
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.58
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	96.57
KOG2550|consensus	503		96.57
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.57
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.56
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	96.55
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.53
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.52
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.5
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.41
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.34
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.34
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.31
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.18
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.16
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.14
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.0
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	95.98
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	95.8
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	95.54
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	95.46
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	95.28
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	94.67
COG3448	382	CBS-domain-containing membrane protein [Signal tra	94.55
KOG0474|consensus	762		94.5
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.03
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	93.58
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	93.57
KOG1764|consensus	381		92.72
KOG1764|consensus	381		92.11
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	91.92
COG2524	294	Predicted transcriptional regulator, contains C-te	91.66
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	91.55
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	91.28
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	90.64
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	90.64
KOG2550|consensus	503		90.5
PRK11573	413	hypothetical protein; Provisional	90.22
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	90.19
KOG0475|consensus	696		86.99
COG1253	429	TlyC Hemolysins and related proteins containing CB	86.32
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	85.92
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	84.53
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	80.63

>KOG0474|consensus

Probab=100.00  E-value=3.5e-72  Score=556.23  Aligned_cols=306  Identities=47%  Similarity=0.856  Sum_probs=282.6

Q ss_pred             ccCCCccCCCCCcc-ccEEEEcCCCchhhHHHHhccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy15906          4 SIDDCRPLGEDPTE-HAVQMYCEDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGG   82 (352)
Q Consensus         4 ~~~~c~~~~~~~~~-~~~~~~c~~g~y~~~~~l~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG   82 (352)
                      ++++|||||.++++ .-.+|+|++|+||++|+|||+++++++++|||++.++|...+|++|++.+++++++|||+.+|+|
T Consensus       395 ~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsG  474 (762)
T KOG0474|consen  395 FLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSG  474 (762)
T ss_pred             HHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhccccccc
Confidence            78999999988765 44468999999999999999999999999999988999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHH
Q psy15906         83 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW  162 (352)
Q Consensus        83 ~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~  162 (352)
                      +|+|++++||++||++|.++..++    +++||.||++||||++||++|||+|.+||++|+| +..+++|+|++.++|||
T Consensus       475 lFiP~iL~GAa~GRlvg~~l~~~~----~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~  549 (762)
T KOG0474|consen  475 LFIPVILTGAAYGRLVGMLLGSYT----NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKT  549 (762)
T ss_pred             chhHHHHhhHHHHHHHHHHHHHhh----ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHH
Confidence            999999999999999999998876    3899999999999999999999999999999999 67899999999999999


Q ss_pred             HHhhcCCchhHHHHHHcCCCCCCCCCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccC
Q psy15906        163 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSS  242 (352)
Q Consensus       163 v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~  242 (352)
                      |+|.||++|||.++++||+|+++|++++.+++++|+|+|++++++++..++++.++++|++++||+|||||+.+.     
T Consensus       550 VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~-----  624 (762)
T KOG0474|consen  550 VGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS-----  624 (762)
T ss_pred             HHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998611     


Q ss_pred             CcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccCCC--CCCCCcCHHHHhhhCC
Q psy15906        243 DGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQN--WPDDQLSSEIFHAEYP  320 (352)
Q Consensus       243 d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~  320 (352)
                                                       ++.++++|+|.|+||++.|+++.|.+++.  .+....+...+++.|+
T Consensus       625 ---------------------------------~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~  671 (762)
T KOG0474|consen  625 ---------------------------------NEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAK  671 (762)
T ss_pred             ---------------------------------ccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhh
Confidence                                             12368999999999999999999987654  2221223456778899


Q ss_pred             CCCCcccccCCccccCCcccccccccCCCCCC
Q psy15906        321 RYPSVNDLVVSENDRSFTVKLNLFMNTSPFSE  352 (352)
Q Consensus       321 ~~p~i~~~~~~~~~~~~~~dl~p~~n~sp~t~  352 (352)
                      |.|+|+|++++++|+++|+||.||||+||||+
T Consensus       672 r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV  703 (762)
T KOG0474|consen  672 REPSIEDVHLTSEEMEMYVDLHPFMNPSPYTV  703 (762)
T ss_pred             cCCchhhhhcchHhHhhccccccccCCCCccc
Confidence            99999999999999999999999999999985

>KOG0475|consensus

Probab=100.00  E-value=3.4e-41  Score=336.21  Aligned_cols=257  Identities=29%  Similarity=0.509  Sum_probs=206.3

Q ss_pred             CcHHHHHHHhcCCCC--ch---------hHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcC
Q psy15906         39 VPEKSVRTMLHDPKG--AF---------GVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP  107 (352)
Q Consensus        39 ~~~~~i~~l~~~~~~--~~---------~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p  107 (352)
                      ++.+.++.||+++..  .-         ..+.|++.+++|+++|++|+|+++|+|+|+|||++||+.||++|.++.++++
T Consensus       370 ~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~  449 (696)
T KOG0475|consen  370 NMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQ  449 (696)
T ss_pred             hHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhc
Confidence            456888999986531  11         2678888899999999999999999999999999999999999999888765


Q ss_pred             -------CCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHc
Q psy15906        108 -------EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  179 (352)
Q Consensus       108 -------~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~  179 (352)
                             +..++.|++||++||||+|+|++|+|+|++||+||+||++.+++|+|+|+++|+||++.+. ++|||.++++|
T Consensus       450 ~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~n  529 (696)
T KOG0475|consen  450 NPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELN  529 (696)
T ss_pred             CCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence                   3346899999999999999999999999999999999999999999999999999999986 89999999999


Q ss_pred             CCCCCCCCCCCCCccccccccccc---C--eEEecC-CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCC
Q psy15906        180 GIPLLAWDPPPLSSNITARIVKSH---P--VICLRP-LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGST  253 (352)
Q Consensus       180 g~p~l~~~~~~~l~~i~V~dIM~~---~--vv~l~~-~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~  253 (352)
                      |+|+++.+++..  +.-..++|.+   +  ..+++. .++++|+..+++++++++||||-++                  
T Consensus       530 g~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~------------------  589 (696)
T KOG0475|consen  530 GYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE------------------  589 (696)
T ss_pred             CCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc------------------
Confidence            999997665443  4445555542   2  444554 4999999999999999999999765                  


Q ss_pred             CcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccCCCCCCCCcCHHHHhhhCCCCCCcccccCCcc
Q psy15906        254 DSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSEN  333 (352)
Q Consensus       254 ~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~  333 (352)
                                             ++++++|+|+|+|+..++....-..+...+. .  . .|.+.-|..+         .
T Consensus       590 -----------------------~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~-~--~-~f~~~~~~~~---------~  633 (696)
T KOG0475|consen  590 -----------------------DSQRLVGFVLRRNLFLAILNARKIQSFIVTT-S--I-YFNDPSPSAV---------A  633 (696)
T ss_pred             -----------------------ccceeEEEEchHHHHHHHhhhccccccceec-c--c-ccCCCCcccc---------C
Confidence                                   1479999999999999987543211110111 1  1 3333322222         3


Q ss_pred             ccCCcccccccccCCCCC
Q psy15906        334 DRSFTVKLNLFMNTSPFS  351 (352)
Q Consensus       334 ~~~~~~dl~p~~n~sp~t  351 (352)
                      +.+..+||+.|||.+|+|
T Consensus       634 ~~~~~~~lk~il~~tp~t  651 (696)
T KOG0475|consen  634 GIPSRLDLKDILDMTPFT  651 (696)
T ss_pred             CCCCCcCceeeccCCccc
Confidence            577889999999999997

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=100.00  E-value=2.5e-37  Score=320.48  Aligned_cols=252  Identities=20%  Similarity=0.269  Sum_probs=211.8

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      .|+|++.++.++++   .+.+..++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|... ..|+.
T Consensus       296 ~g~G~~~i~~~~~~---~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~  371 (574)
T PRK01862        296 WGNGYSVVNTILHA---PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHT-SAPFA  371 (574)
T ss_pred             hcCCHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcc-cchHH
Confidence            38999999999976   356677888889999999999999999999999999999999999999998877542 46788


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHcCCCCCCCCCCCCCccc
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNI  195 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~g~p~l~~~~~~~l~~i  195 (352)
                      |+++||||+++|++|+|+|++++++|+|++++.++|+|+++++|+++++.++ +|+|+.++++++.+    .+...++.+
T Consensus       372 ~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~~  447 (574)
T PRK01862        372 YAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRTT  447 (574)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhhC
Confidence            9999999999999999999999999999999999999999999999999885 99999999988643    245567889


Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--ccC--CCCCCcccCCCCCcccCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QSS--AGSTDSHKGDTSHKRDSSH  268 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~~--~~~~~~~~~m~~~~~~~~~  268 (352)
                      +|+|+|++++.+++++++++|+.+.+.+++++.+||+|++++.   ++.+|...  ...  ..+.++.++|.+++++++.
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~  527 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTP  527 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECC
Confidence            9999999999999999999999999999999999999986443   23333221  011  1235688899999888875


Q ss_pred             CC------------CCCcCC---CC--CeEEEEEeHHHHHHHHHh
Q psy15906        269 KG------------DASRKD---SP--GRLVGLILRSQLIILIKH  296 (352)
Q Consensus       269 ~~------------~~~~l~---~~--g~lvGiItRsdLi~~L~~  296 (352)
                      +.            +.+.+|   ++  ++++|+|||+|+++++.+
T Consensus       528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            43            344444   23  589999999999999865

>KOG0476|consensus

Probab=100.00  E-value=8.5e-36  Score=301.59  Aligned_cols=203  Identities=30%  Similarity=0.528  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCC-------cCChhHHHHHHHHHHHHhh
Q psy15906         57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEAT-------WIDPGKYALIGAAAQLGGV  129 (352)
Q Consensus        57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~-------~~~~~~~alvG~aa~l~g~  129 (352)
                      +.+|++|+++||++++++..+.+|+|+|+|.+++||++||++|+.+..++|.+.       .+.||.||++|||||-|++
T Consensus       442 f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaV  521 (931)
T KOG0476|consen  442 FGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAV  521 (931)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccce
Confidence            568999999999999999999999999999999999999999999998888542       4789999999999988888


Q ss_pred             hchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCCCCC--CcccccccccccCeEE
Q psy15906        130 VRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPL--SSNITARIVKSHPVIC  207 (352)
Q Consensus       130 ~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~--l~~i~V~dIM~~~vv~  207 (352)
                      ++ ++|.+||+||+||+...++|+|+|+++|..|+..++.||||..|+.|++|||++.++..  .+.+.|+|+|.+|+.+
T Consensus       522 TH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~y  600 (931)
T KOG0476|consen  522 TH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKY  600 (931)
T ss_pred             ee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccccee
Confidence            86 89999999999999999999999999999999999999999999999999999887654  5678999999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeH
Q psy15906        208 LRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILR  287 (352)
Q Consensus       208 l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItR  287 (352)
                      +..+.|.+|+.+.+..++.+.||+||+.                                         ++..|+|.|.|
T Consensus       601 I~k~~Ty~elre~l~~~~lR~~PlV~s~-----------------------------------------esmiLlGSV~R  639 (931)
T KOG0476|consen  601 ITKDTTYRELREALQTTTLRSFPLVESK-----------------------------------------ESMILLGSVAR  639 (931)
T ss_pred             eeccCcHHHHHHHHHhCccceeccccCc-----------------------------------------ccceeeehhHH
Confidence            9999999999999998889999999975                                         24689999999


Q ss_pred             HHHHHHHHhhhccc
Q psy15906        288 SQLIILIKHKIYKE  301 (352)
Q Consensus       288 sdLi~~L~~~~~~~  301 (352)
                      ++|..+|++++-.+
T Consensus       640 ~~L~~ll~~~ig~~  653 (931)
T KOG0476|consen  640 RYLTALLQRHIGPE  653 (931)
T ss_pred             HHHHHHHHhhcCcc
Confidence            99999999876543

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=99.95  E-value=1.4e-27  Score=241.67  Aligned_cols=128  Identities=55%  Similarity=1.022  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHH
Q psy15906         59 SLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTI  138 (352)
Q Consensus        59 ~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~v  138 (352)
                      .+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+++.. ..+|+.||++||||+++|++|+|+|+++
T Consensus       335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~-~~~~~~~aliGmaa~lag~~raPlt~iv  413 (466)
T cd03685         335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT-SIDPGLYALLGAAAFLGGVMRMTVSLTV  413 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc-CCCchHHHHHHHHHHHhHHhhhhHHHHH
Confidence            456667889999999999999999999999999999999999999887643 3789999999999999999999999999


Q ss_pred             HHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCC
Q psy15906        139 ILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWD  187 (352)
Q Consensus       139 i~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~  187 (352)
                      |++|+||++++++|+|+++++|+++++.+++|+||.++++||+||+++.
T Consensus       414 iv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~  462 (466)
T cd03685         414 ILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG  462 (466)
T ss_pred             HhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence            9999999999999999999999999999999999999999999999864

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=99.95  E-value=1.1e-27  Score=241.12  Aligned_cols=147  Identities=37%  Similarity=0.803  Sum_probs=130.4

Q ss_pred             cCcHHHHHHHhcCCC-----------------Cc-hhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHH
Q psy15906         38 QVPEKSVRTMLHDPK-----------------GA-FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFS   99 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~-----------------~~-~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g   99 (352)
                      ++|++.++.+|++..                 .. ..++.+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|
T Consensus       267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g  346 (445)
T cd03684         267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG  346 (445)
T ss_pred             cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence            678889999886421                 11 245678888999999999999999999999999999999999999


Q ss_pred             HHHHHhc---CCC----------CcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhh
Q psy15906        100 LFLQSIF---PEA----------TWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF  166 (352)
Q Consensus       100 ~~~~~~~---p~~----------~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~  166 (352)
                      .+++.+.   |+.          ...+|+.||++||||+++|++|+|+|++++++|+||++++++|+|+++++||++++.
T Consensus       347 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~  426 (445)
T cd03684         347 ILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADA  426 (445)
T ss_pred             HHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHH
Confidence            9998763   321          126789999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CchhHHHHHHcCCCCC
Q psy15906        167 FT-EGLYDIHIQLSGIPLL  184 (352)
Q Consensus       167 ~~-~~iy~~~l~~~g~p~l  184 (352)
                      ++ +|+||.++++||+||+
T Consensus       427 ~~~~siY~~~l~~~g~p~l  445 (445)
T cd03684         427 IGKEGIYDAHIHLNGYPFL  445 (445)
T ss_pred             hCCCCHHHHHHHhcCCCCC
Confidence            96 8999999999999986

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=99.93  E-value=4.1e-26  Score=228.68  Aligned_cols=129  Identities=33%  Similarity=0.639  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCC------CCcCChhHHHHHHHHHHHHhhh
Q psy15906         57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPE------ATWIDPGKYALIGAAAQLGGVV  130 (352)
Q Consensus        57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~------~~~~~~~~~alvG~aa~l~g~~  130 (352)
                      +..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|+      ....+|+.||++||||+++|++
T Consensus       292 ~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~  371 (426)
T cd03683         292 FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVT  371 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHH
Confidence            4456677889999999999999999999999999999999999999988872      1236789999999999999999


Q ss_pred             chhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCC
Q psy15906        131 RMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAW  186 (352)
Q Consensus       131 r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~  186 (352)
                      |+|.++ ++++|+||++++++|+|+++++|+++++.+++|+||.+++.||+||+++
T Consensus       372 ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~  426 (426)
T cd03683         372 HTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD  426 (426)
T ss_pred             hHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence            987765 6999999999999999999999999999999999999999999999973

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>cd01031 EriC ClC chloride channel EriC

Probab=99.93  E-value=3.2e-25  Score=220.80  Aligned_cols=137  Identities=29%  Similarity=0.508  Sum_probs=126.9

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +++|++.++.++++   ++++..++.+++.|+++|++|+|+|.+||+|+|++++||++|+++|.+++.++|.. ..+|+.
T Consensus       265 ~g~G~~~i~~~~~~---~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~-~~~~~~  340 (402)
T cd01031         265 LGGGHGLILSLAGG---NFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIP-ISAPAT  340 (402)
T ss_pred             hCCHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccHHH
Confidence            37899999998875   46777888899999999999999999999999999999999999999999888754 378999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CCchhHHHHH
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ  177 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~-~~~iy~~~l~  177 (352)
                      |+++||||+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++|+||.+++
T Consensus       341 ~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~  402 (402)
T cd01031         341 FAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE  402 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence            999999999999999999999999999999999999999999999999998 5999999864

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.93  E-value=5.8e-25  Score=219.81  Aligned_cols=139  Identities=22%  Similarity=0.280  Sum_probs=125.7

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +|+|++.++.+++.   .+.+..++.+++.|+++|++|+|+|.+||+|+|++++||++|+++|.+++.++|... ..+..
T Consensus       278 ~G~G~~~i~~~~~~---~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~  353 (418)
T PRK01610        278 WGNGYSVVQSFLTA---PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGE-EITLL  353 (418)
T ss_pred             hCCcHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cchHH
Confidence            48999999998875   345667777889999999999999999999999999999999999999998777532 44789


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CCchhHHHHHHc
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLS  179 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~-~~~iy~~~l~~~  179 (352)
                      |+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ ++++|+.++..+
T Consensus       354 ~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~  417 (418)
T PRK01610        354 LGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH  417 (418)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence            999999999999999999999999999999999999999999999999988 599999998654

>PRK05277 chloride channel protein; Provisional

Probab=99.92  E-value=3.8e-24  Score=215.33  Aligned_cols=138  Identities=25%  Similarity=0.491  Sum_probs=128.2

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      ++|++.++.++++   .+++..++.+++.|++++++|+|+|+|||+|.|++++||++|+++|.+++.++|.. ..+|..|
T Consensus       279 g~G~~~i~~~~~~---~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~-~~~~~~~  354 (438)
T PRK05277        279 GGGFNLIPIALAG---NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQY-HIEPGTF  354 (438)
T ss_pred             CChHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-cccHHHH
Confidence            7889999999875   45667788889999999999999999999999999999999999999999988864 3789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHc
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  179 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~  179 (352)
                      +++||||++++++|+|+|++++++|+||+++.++|+|+++++|+++++.++ +++||.++++.
T Consensus       355 a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~  417 (438)
T PRK05277        355 AIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT  417 (438)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999995 99999999875

>cd01036 ClC_euk Chloride channel, ClC

Probab=99.91  E-value=1.5e-24  Score=216.90  Aligned_cols=117  Identities=46%  Similarity=0.842  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCC-------CcCChhHHHHHHHHHHHHhh
Q psy15906         57 VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGV  129 (352)
Q Consensus        57 ~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~-------~~~~~~~~alvG~aa~l~g~  129 (352)
                      +..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|..       ...+|+.||++||||+++|+
T Consensus       293 ~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~  372 (416)
T cd01036         293 APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGT  372 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhh
Confidence            34567778899999999999999999999999999999999999999887732       13689999999999999999


Q ss_pred             hchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhH
Q psy15906        130 VRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD  173 (352)
Q Consensus       130 ~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~  173 (352)
                      +|+|+|++++++|+||++++++|+|+++++|+++++.+++|+||
T Consensus       373 ~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~  416 (416)
T cd01036         373 TRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH  416 (416)
T ss_pred             hcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999999999999999999999999999999997

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=99.91  E-value=6.6e-24  Score=208.17  Aligned_cols=131  Identities=34%  Similarity=0.595  Sum_probs=112.2

Q ss_pred             hccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906         36 WLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  115 (352)
Q Consensus        36 ~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~  115 (352)
                      .+++|++.++.+++++...+.+..++++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++..+|+....+|+
T Consensus       225 ~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~  304 (355)
T PF00654_consen  225 VLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPG  304 (355)
T ss_dssp             GSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHH
T ss_pred             ccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchH
Confidence            45789999999998754457889999999999999999999999999999999999999999999999998754334799


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhh
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF  166 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~  166 (352)
                      .|+++||+|++++++|+|++++++++|+||++++++|+|+++++||++++.
T Consensus       305 ~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~  355 (355)
T PF00654_consen  305 VYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW  355 (355)
T ss_dssp             HHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999873

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2e-23  Score=209.95  Aligned_cols=144  Identities=28%  Similarity=0.532  Sum_probs=129.5

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      ++|++.++..++.+   ..+..++.+++.|+++|.+|+|+|.|||+|+|++++||++|.++|.+++.++|.. ...+..|
T Consensus       293 g~G~~~~~~~~~~~---~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~-~~~~~~~  368 (443)
T COG0038         293 GNGYGLIQLALAGE---GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS-ILEPGLF  368 (443)
T ss_pred             CCCccHHHHHHccC---ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc-ccchHHH
Confidence            68889999888863   2333378889999999999999999999999999999999999999999887753 2567899


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHcCCCCCC
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLA  185 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~g~p~l~  185 (352)
                      +++||+|++++++|+|+|++++++|+||+++.++|+|+++++||++++... +++|+..+++++.+..+
T Consensus       369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (443)
T COG0038         369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR  437 (443)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence            999999999999999999999999999999999999999999999999874 89999999999887443

>cd01033 ClC_like Putative ClC chloride channel

Probab=99.89  E-value=1.4e-22  Score=201.06  Aligned_cols=126  Identities=25%  Similarity=0.398  Sum_probs=116.5

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      .|+|++.++.++++   .+++..++.+++.|+++|++|+|+|.+||+|.|++++||++|+++|.+++.++|.   .++..
T Consensus       261 ~G~G~~~i~~~~~~---~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~---~~~~~  334 (388)
T cd01033         261 LGNGRALAQLAFST---TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP---LSIAA  334 (388)
T ss_pred             hCCcHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc---ccHHH
Confidence            47899999999986   3566777888999999999999999999999999999999999999999887764   46889


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhC-CchhhHHHHHHHHHHHHHHhhcC
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg-~~~~~lp~m~~~~~a~~v~~~~~  168 (352)
                      |+++||||++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.++
T Consensus       335 ~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~  387 (388)
T cd01033         335 FALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL  387 (388)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999 99999999999999999998764

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd01034 EriC_like ClC chloride channel family

Probab=99.87  E-value=8.2e-22  Score=195.66  Aligned_cols=125  Identities=28%  Similarity=0.468  Sum_probs=111.6

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +|+|++.++.+++++. ..    ...+++.|+++|++|+|+|+|||.|+|++++||++|++++.++.    .   .++..
T Consensus       265 ~G~G~~~i~~~~~~~~-~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~---~~~~~  332 (390)
T cd01034         265 FGTGYLQARAALEGGG-GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S---VSQGA  332 (390)
T ss_pred             ccCcHHHHHHHHhCCC-cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C---CCchH
Confidence            4689999999887632 12    23457899999999999999999999999999999999998653    2   47899


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhH
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD  173 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~  173 (352)
                      |+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++.++ +++||
T Consensus       333 ~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~  390 (390)
T cd01034         333 LVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH  390 (390)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999985 89996

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.83  E-value=4.3e-20  Score=182.85  Aligned_cols=121  Identities=35%  Similarity=0.595  Sum_probs=111.1

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      .++|++.++..+++   .+++..++.+++.|++++++|+|+|+|||.|+|++++||++|+++|.+++.++|.. ..++..
T Consensus       263 ~g~G~~~~~~~~~~---~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~-~~~~~~  338 (383)
T cd00400         263 LGSGYGAILLALAG---ELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL-VASPGA  338 (383)
T ss_pred             HcCcHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc-cCChHH
Confidence            47888888888875   45667788899999999999999999999999999999999999999999888744 378999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHH
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAK  161 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~  161 (352)
                      |+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus       339 ~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~  383 (383)
T cd00400         339 YALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY  383 (383)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999885

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=99.81  E-value=1.9e-19  Score=178.06  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=102.3

Q ss_pred             ccCcHHHHHH-HhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906         37 LQVPEKSVRT-MLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  115 (352)
Q Consensus        37 ~~~~~~~i~~-l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~  115 (352)
                      .|.|++.++. ++++   ...    ...++.|+++|++|+|+|+|||+|+|++++||++|+++|++++        .++.
T Consensus       259 ~G~g~~~i~~~~~~~---~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~--------~~~~  323 (378)
T cd03682         259 LGLGTPLIEDSFFGG---TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG--------LPVS  323 (378)
T ss_pred             ccCCHHHHHHHHhcC---Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC--------CCHH
Confidence            3667778877 5543   222    2235899999999999999999999999999999999998753        3578


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhH
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD  173 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~  173 (352)
                      .|+++||||++++++|+|++++++++|+|| .+.++|+|+++++||.+++  +++||+
T Consensus       324 ~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~  378 (378)
T cd03682         324 LLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG  378 (378)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence            999999999999999999999999999999 5788999999999999986  578884

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>PRK03655 putative ion channel protein; Provisional

Probab=99.73  E-value=2.4e-17  Score=164.61  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=101.8

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +++||+.++.+.++  ++++++.++++++.|+++|++|+|+|+|||+|+|+|++||++|..++.+    +|.   .++..
T Consensus       280 ~g~Gy~~i~~~~~~--~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~---~~~~~  350 (414)
T PRK03655        280 LFKGLDEMQQMAAN--QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA---VPAAI  350 (414)
T ss_pred             ccCCHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC---CChHH
Confidence            57889999988765  2567788888999999999999999999999999999999999888775    443   46788


Q ss_pred             HHHHHHHHHHHhhhc----hhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHh
Q psy15906        117 YALIGAAAQLGGVVR----MTISLTIILIEATGNISFGLPLMLTLITAKWIGD  165 (352)
Q Consensus       117 ~alvG~aa~l~g~~r----~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~  165 (352)
                      .+++||+|+++|++|    +|+|+.|+++|+|     ++|+|++++++.|+.-
T Consensus       351 ~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~  398 (414)
T PRK03655        351 TVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL  398 (414)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence            899999999999999    6999999999999     8999999999888764

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.44  E-value=4.3e-14  Score=134.41  Aligned_cols=134  Identities=22%  Similarity=0.241  Sum_probs=115.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCCCCCCcccccccccc--cCeEEecCCCCHHHHHHHHHhCC
Q psy15906        148 SFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKS--HPVICLRPLETVGNIIDVLKATS  225 (352)
Q Consensus       148 ~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~  225 (352)
                      +.-+|++-++.-.+.|+...|+.+|+.+++.              +-++|+|+|+  .+.-++.++++++++.++.++++
T Consensus       155 e~~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~  220 (432)
T COG4109         155 EKGLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTG  220 (432)
T ss_pred             ccCCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcC
Confidence            4568999999999999999999999999875              4679999999  58889999999999999999999


Q ss_pred             CCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeH
Q psy15906        226 HNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILR  287 (352)
Q Consensus       226 ~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItR  287 (352)
                      |+.|||||+...+   ++++|.  .+..+++++.++|+++|+++..+            ++++.+|   ++.+++|+|||
T Consensus       221 ~sRfPVvn~~~kvvGvVt~rDv--~~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR  298 (432)
T COG4109         221 HSRFPVVNRSMKVVGVVTMRDV--LDKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITR  298 (432)
T ss_pred             CCccceecccceEEEEEEehhh--hcCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEH
Confidence            9999999987443   455655  77788999999999999999966            3455566   47899999999


Q ss_pred             HHHHHHHHhh
Q psy15906        288 SQLIILIKHK  297 (352)
Q Consensus       288 sdLi~~L~~~  297 (352)
                      +|++++|+..
T Consensus       299 ~dvlk~lq~~  308 (432)
T COG4109         299 QDVLKSLQMI  308 (432)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.34  E-value=7.1e-12  Score=124.24  Aligned_cols=122  Identities=20%  Similarity=0.164  Sum_probs=102.0

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      +.|.+.+...++++.+...+    -.++.|++.+.+++++|.++|.+.|++.+||++|..+++..+.  +   ..+...+
T Consensus        63 g~G~~~v~~~~~~~~~~~~~----~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~---~~~~~~l  133 (383)
T cd00400          63 GHGIPEVIEAIALGGGRLPL----RVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S---RNDRRIL  133 (383)
T ss_pred             CCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C---HHHHHHH
Confidence            56777777666654433332    3458899999999999999999999999999999999987642  1   1346689


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHHhhcC
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~---~~lp~m~~~~~a~~v~~~~~  168 (352)
                      +.+||||.+++++++|++++++.+|.++...   .++|.++++++|+++++.+.
T Consensus       134 ~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~  187 (383)
T cd00400         134 VACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF  187 (383)
T ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999998655   78999999999999999863

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>cd01031 EriC ClC chloride channel EriC

Probab=99.32  E-value=1e-11  Score=124.05  Aligned_cols=121  Identities=20%  Similarity=0.184  Sum_probs=101.8

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|.+.++..++++.....    .-.++.|++.+++++|+|.++|.+.|++.+||++|..+++.++.    . ..+...+
T Consensus        64 g~G~~~v~~~l~~~~~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----~-~~~~~~l  134 (402)
T cd01031          64 GSGIPQVEGVLAGLLPPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----S-PEERRQL  134 (402)
T ss_pred             CCCHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----C-HHHHHHH
Confidence            6678888888886443222    23467899999999999999999999999999999999987542    1 1346789


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHH-hhCCch--hhHHHHHHHHHHHHHHhhc
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIE-ATGNIS--FGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~E-lTg~~~--~~lp~m~~~~~a~~v~~~~  167 (352)
                      ..+||||.++++.|+|++++++.+| +++++.  .+.|+++++++|+.+++.+
T Consensus       135 ~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~  187 (402)
T cd01031         135 IAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF  187 (402)
T ss_pred             HHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 777654  7999999999999999875

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.19  E-value=2.1e-10  Score=107.23  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc---------ccCCCCCCcccCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE---------QSSAGSTDSHKGD  259 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~---------~~~~~~~~~~~~m  259 (352)
                      ...+++.|||+++|+++++++++.++.++|.+++.+.+||+|++++.   ++.+|...         .+......++.+|
T Consensus       242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~im  321 (382)
T COG3448         242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIM  321 (382)
T ss_pred             hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccc
Confidence            45688999999999999999999999999999999999999998655   34444432         2223456789999


Q ss_pred             CCCcccCCCCCCCCc---------------CCCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906        260 TSHKRDSSHKGDASR---------------KDSPGRLVGLILRSQLIILIKHKIY  299 (352)
Q Consensus       260 ~~~~~~~~~~~~~~~---------------l~~~g~lvGiItRsdLi~~L~~~~~  299 (352)
                      ++...|+..+..+..               ++++|+++||||++|++.++.+...
T Consensus       322 t~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         322 TTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             cCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence            999999986643221               2358999999999999999987653

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.17  E-value=2.4e-11  Score=111.61  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=89.8

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc--cccCCcc--cccCCCCCCcccCCCCCcccCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT--KHSSDGA--EQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~--~~~~d~~--~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+.+|+++|++++++++++++++++..+|.+...+|.||+|+++.+  .|.+|.+  +.++..+..++++|++++++++
T Consensus       169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vitI~  248 (294)
T COG2524         169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVITIN  248 (294)
T ss_pred             cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhccCCceEc
Confidence            45778999999999999999999999999999999999999998433  4666665  5777889999999999999998


Q ss_pred             C------------CCCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        268 H------------KGDASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       268 ~------------~~~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                      .            +++.+||-   .+|+.+|+|||+|+++.+.
T Consensus       249 eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         249 EDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            3            35677763   4899999999999999875

>PRK05277 chloride channel protein; Provisional

Probab=99.12  E-value=3.8e-10  Score=113.92  Aligned_cols=123  Identities=16%  Similarity=0.102  Sum_probs=98.9

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|...++..+++.. ...+   .-.+..|++.+.+++|+|.++|.+.|++.+||++|..++..++...    ..+...+
T Consensus        71 GsGi~~i~~~l~~~~-~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~----~~~~~~l  142 (438)
T PRK05277         71 GSGIPEIEGALEGLR-PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRS----DEARHTL  142 (438)
T ss_pred             CCCHHHHHHHHcCCC-ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCC----HHHHHHH
Confidence            567778888887532 2221   1234789999999999999999999999999999999998764311    1245679


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHH-hhCCc--h--hhHHHHHHHHHHHHHHhhcC
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIE-ATGNI--S--FGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~E-lTg~~--~--~~lp~m~~~~~a~~v~~~~~  168 (352)
                      ..+||||.++++.++|++++++.+| +++.+  .  .+.|+++++++|+.+.+.+.
T Consensus       143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~  198 (438)
T PRK05277        143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN  198 (438)
T ss_pred             HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999 66532  3  47999999999999998763

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.04  E-value=2.6e-10  Score=97.80  Aligned_cols=104  Identities=13%  Similarity=0.304  Sum_probs=86.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccC-------CCCCCcccCCCCCccc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS-------AGSTDSHKGDTSHKRD  265 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~-------~~~~~~~~~m~~~~~~  265 (352)
                      ..++++.+|+++++.+++++++++++++|++.+++.+||++++..++++++..+.+.       ..+..+.++|....++
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~  142 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT  142 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence            578999999999999999999999999999999999999999866667666654332       3356788899999999


Q ss_pred             CCCCCCCCc------------CCCCCeEEEEEeHHHHHHHHHh
Q psy15906        266 SSHKGDASR------------KDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       266 ~~~~~~~~~------------l~~~g~lvGiItRsdLi~~L~~  296 (352)
                      ++...+.+-            .-++|+++|||||.|+++.+..
T Consensus       143 Vs~~~~l~vI~~LL~~~~AVlV~e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         143 VSPDESLNVISQLLEEHPAVLVVENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             CCCCCCHHHHHHHHhhCCeEEEEeCCceEEEEeHHHHHHHHhc
Confidence            997655332            1258999999999999998864

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=98.99  E-value=3.2e-09  Score=105.33  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=96.3

Q ss_pred             CcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHH
Q psy15906         39 VPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA  118 (352)
Q Consensus        39 ~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~a  118 (352)
                      .|.+.+...++++.+...+..    ...|++.+.+++++|.++|.+.|+..+||++|..++..++.    . ..+...+.
T Consensus        57 ~g~~~v~~~~~~~~~~~~~~~----~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~----~-~~~~r~l~  127 (378)
T cd03682          57 KGNNLIIEEIHGPEEGIPLRM----APLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL----P-EEDRRILL  127 (378)
T ss_pred             CChHHHHHHHHccCCCCchHH----HHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC----C-HHHHHHHH
Confidence            455555556665434343332    34599999999999999999999999999999999986531    1 12345689


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHhh--C--CchhhHHHHHHHHHHHHHHhhcC
Q psy15906        119 LIGAAAQLGGVVRMTISLTIILIEAT--G--NISFGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       119 lvG~aa~l~g~~r~pls~~vi~~ElT--g--~~~~~lp~m~~~~~a~~v~~~~~  168 (352)
                      .+||||.++++.|+|++++++.+|.+  +  ++..++|.++++++++.+++.+.
T Consensus       128 ~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~  181 (378)
T cd03682         128 IAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG  181 (378)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999997  3  35778899999999999998764

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.98  E-value=1.6e-09  Score=77.59  Aligned_cols=56  Identities=25%  Similarity=0.543  Sum_probs=53.0

Q ss_pred             cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906        197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD  276 (352)
Q Consensus       197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~  276 (352)
                      |+++|+++++++++++++.++.+.|.+++.+.+||+|++                                         
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------------------------------------   39 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------------------------------------   39 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------------------------------------
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------------------------------------
Confidence            679999999999999999999999999999999999976                                         


Q ss_pred             CCCeEEEEEeHHHHHHHHH
Q psy15906        277 SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       277 ~~g~lvGiItRsdLi~~L~  295 (352)
                        ++++|+|+++||++++.
T Consensus        40 --~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen   40 --GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             --SBEEEEEEHHHHHHHHH
T ss_pred             --CEEEEEEEHHHHHhhhh
Confidence              89999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.87  E-value=2.5e-09  Score=103.73  Aligned_cols=126  Identities=8%  Similarity=-0.025  Sum_probs=94.4

Q ss_pred             CCchhHHHHHHcCCCC---CCCCCCCCC---ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-
Q psy15906        168 TEGLYDIHIQLSGIPL---LAWDPPPLS---SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-  238 (352)
Q Consensus       168 ~~~iy~~~l~~~g~p~---l~~~~~~~l---~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-  238 (352)
                      .+++|...++.+|.-.   ...++...+   ..++|+|+|++  +++++++++++.++.+.|.+++++.+||+|+++.. 
T Consensus       169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lv  248 (326)
T PRK10892        169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIE  248 (326)
T ss_pred             HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEE
Confidence            3688988899888776   555555556   78899999997  89999999999999999988888777888865344 


Q ss_pred             c--ccCCccc--ccC--CCCCCcccCCCCCcccCCCC------------CCCCcCC--CCCeEEEEEeHHHHHHH
Q psy15906        239 K--HSSDGAE--QSS--AGSTDSHKGDTSHKRDSSHK------------GDASRKD--SPGRLVGLILRSQLIIL  293 (352)
Q Consensus       239 ~--~~~d~~~--~~~--~~~~~~~~~m~~~~~~~~~~------------~~~~~l~--~~g~lvGiItRsdLi~~  293 (352)
                      +  +.+|...  ..+  ..+.++.++|+++++++...            ++.+.+|  ++++++|+|||+|++++
T Consensus       249 Givt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~  323 (326)
T PRK10892        249 GIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             EEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence            3  3333321  111  22467899999999888754            3455555  47899999999999864

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=98.84  E-value=3.1e-08  Score=97.47  Aligned_cols=127  Identities=19%  Similarity=0.242  Sum_probs=97.5

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCC-hhH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWID-PGK  116 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~-~~~  116 (352)
                      +.|-..+...++.+.+...+..+    +.|++.+.+|.|.|.+-|...|+..+|+++|..+++..+.- +    .+ -..
T Consensus        19 g~Gi~~v~~~~~~~~~~~~~~~~----~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~-~----~~~~r~   89 (355)
T PF00654_consen   19 GSGIPEVKAALRGKSGRLPFRTL----PVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLS-R----NETRRL   89 (355)
T ss_dssp             B-SHHHHHHHCTTSS---HHHHH----HHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT---C----HHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhccc-c----hHHHhH
Confidence            45667777777776554444444    78999999999999999999999999999999999874421 1    12 345


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhc-C-CchhH
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF-T-EGLYD  173 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~-~-~~iy~  173 (352)
                      +..+|+||.++++.++|++.+++.+|...   +...++|.++++++|+.+.+.+ . ++.|.
T Consensus        90 l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~f~  151 (355)
T PF00654_consen   90 LLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFGNHPIFG  151 (355)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHTSS-SS-
T ss_pred             HHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcCcCcccc
Confidence            99999999999999999999999999865   5789999999999999999987 3 55554

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=98.84  E-value=2.5e-08  Score=100.89  Aligned_cols=122  Identities=22%  Similarity=0.223  Sum_probs=102.0

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      +.|-+.+...+|...+.+.+...    ..|++.+.+++|+|.+.|...|+..+|+++|+.++..+..-     ..+-...
T Consensus        91 g~Gi~~~i~a~~~~~~~~~~~~~----~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-----~~~~r~L  161 (443)
T COG0038          91 GSGIPQAIEALHGRKGRISPRVL----PVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-----REDRRIL  161 (443)
T ss_pred             CCChhHHHHHHhcCCCcccHHHH----HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-----HHHHHHH
Confidence            45667777777765555555444    44999999999999999999999999999999999987521     1355778


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHHhhcC
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg----~~~~~lp~m~~~~~a~~v~~~~~  168 (352)
                      ..+|+||-+|++.++|++++++.+|.-.    ++..+.|+++++++|+++.+.++
T Consensus       162 l~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~  216 (443)
T COG0038         162 LAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG  216 (443)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999754    35789999999999999999875

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.83  E-value=4.8e-09  Score=101.37  Aligned_cols=126  Identities=13%  Similarity=0.032  Sum_probs=96.1

Q ss_pred             CCchhHHHHHHcCCCC---CCCCCCCCCc---ccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-
Q psy15906        168 TEGLYDIHIQLSGIPL---LAWDPPPLSS---NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-  238 (352)
Q Consensus       168 ~~~iy~~~l~~~g~p~---l~~~~~~~l~---~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-  238 (352)
                      .+++|...++.+|.-.   ...++...++   ..+|+++|.++  +.+++++++++++.+.+.+++...+||||+++.. 
T Consensus       164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~i  243 (321)
T PRK11543        164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQ  243 (321)
T ss_pred             HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence            3688999998888766   6666666788   88999999998  9999999999999999988888999999976444 


Q ss_pred             c--ccCCcc--c-ccCCCCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHH
Q psy15906        239 K--HSSDGA--E-QSSAGSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIIL  293 (352)
Q Consensus       239 ~--~~~d~~--~-~~~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~  293 (352)
                      +  +.+|..  . .....++++.++|++++.++...            ++.+.+|   ++++++|+|||+|++++
T Consensus       244 G~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            2  322321  1 11234567889999998888744            3344555   35899999999999864

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.76  E-value=5.3e-08  Score=101.61  Aligned_cols=117  Identities=20%  Similarity=0.105  Sum_probs=92.7

Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHH
Q psy15906         41 EKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI  120 (352)
Q Consensus        41 ~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alv  120 (352)
                      .+.++...++ .+.+.+..    ...|++.+++|+|+|.+.|-..|+..+||++|..+++.++.  +.   ..-.....+
T Consensus       100 ~~~~~~~~~~-~~~~~~~~----~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--~~---~~~r~l~~~  169 (574)
T PRK01862        100 TDYMEAVALG-DGVVPVRQ----SLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--DP---PRLRLLVAC  169 (574)
T ss_pred             HHHHHHHHcC-CCCCChHH----HHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHH
Confidence            3445544433 33455443    35599999999999999999999999999999999987642  11   223567889


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHhh-CCc--hhhHHHHHHHHHHHHHHhhc
Q psy15906        121 GAAAQLGGVVRMTISLTIILIEAT-GNI--SFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       121 G~aa~l~g~~r~pls~~vi~~ElT-g~~--~~~lp~m~~~~~a~~v~~~~  167 (352)
                      |+||.++++.++|++++++.+|.. +++  ..+.|.++++++|+++++.+
T Consensus       170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~  219 (574)
T PRK01862        170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF  219 (574)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985 543  67899999999999999875

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=98.68  E-value=3.2e-08  Score=100.78  Aligned_cols=123  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             cCcHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHH----------Hh
Q psy15906         38 QVPEKSVRTMLHDPK--GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQ----------SI  105 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~--~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~----------~~  105 (352)
                      |+|...++..+++..  +...+.+    ++.|++.+.+++|+|.|.|.+.|+..+||++|..+++...          ..
T Consensus       105 GsGip~v~~~l~g~~~~~~l~~r~----~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~  180 (466)
T cd03685         105 GSGIPEVKGYLNGVKIPHILRLKT----LLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY  180 (466)
T ss_pred             CCCHHHHHHHHcCcCccccchHHH----HHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh
Confidence            667777888777432  1112223    4789999999999999999999999999999999997421          11


Q ss_pred             cCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhh
Q psy15906        106 FPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDF  166 (352)
Q Consensus       106 ~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~  166 (352)
                      +..  ..+-..+..+||||.++++.++|++.+++.+|.++   ..+...+.++++++|..+++.
T Consensus       181 ~~~--~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~  242 (466)
T cd03685         181 FRN--DRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF  242 (466)
T ss_pred             ccC--HHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            111  12345689999999999999999999999999876   234556666666666666654

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.66  E-value=1.6e-07  Score=94.44  Aligned_cols=98  Identities=15%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906         64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA  143 (352)
Q Consensus        64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El  143 (352)
                      ...|++.+.+++|+|.+.|-..|+..+||++|..+++.++   +.   .+-..+..+|+||-++++.++|++.+++.+|.
T Consensus       100 ~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~---~~---~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~  173 (418)
T PRK01610        100 SLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT---PR---QEWKLWIACGAAAGMASAYHAPLAGSLFIAEI  173 (418)
T ss_pred             HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC---Ch---HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            4789999999999999999999999999999999998765   11   34567999999999999999999999999997


Q ss_pred             h-C--CchhhHHHHHHHHHHHHHHhhc
Q psy15906        144 T-G--NISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       144 T-g--~~~~~lp~m~~~~~a~~v~~~~  167 (352)
                      . +  .+..+.|+++++++|+.+++.+
T Consensus       174 l~~~~~~~~~~p~~ias~~a~~v~~~~  200 (418)
T PRK01610        174 LFGTLMLASLGPVVISAVVALLTTNLL  200 (418)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4  3567899999999999999876

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=98.64  E-value=1.8e-07  Score=94.86  Aligned_cols=124  Identities=14%  Similarity=0.098  Sum_probs=98.2

Q ss_pred             cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906         38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  115 (352)
Q Consensus        38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~  115 (352)
                      |+|=..++..+++.  ++.+.+..+    +.|++.+.++.|+|.+.|-..|+..+||++|..++++.+.+..+.  .+-.
T Consensus        55 GsGIp~v~~~l~g~~~~~~~~~~~~----~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~--~~~r  128 (445)
T cd03684          55 GSGIPEIKTILSGFIIRGFLGKWTL----LIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNE--AKRR  128 (445)
T ss_pred             CCCHHHHHHHHcCccccccccHHHH----HHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCH--HHHH
Confidence            45556666666542  233444444    789999999999999999999999999999999998775432121  3446


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhc
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~  167 (352)
                      ....+|+||-++++.++|++.+++.+|...   +...++|.++++++|..+.+.+
T Consensus       129 ~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~  183 (445)
T cd03684         129 EILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL  183 (445)
T ss_pred             HHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999643   3457889999999999998865

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>cd01036 ClC_euk Chloride channel, ClC

Probab=98.63  E-value=8.5e-08  Score=96.34  Aligned_cols=124  Identities=11%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhc---------
Q psy15906         38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIF---------  106 (352)
Q Consensus        38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---------  106 (352)
                      |+|-..++..+++.  ++.+.+..    ++.|++.+.+++|+|.+.|-..|+..+||++|..+++......         
T Consensus        64 GsGIp~v~~~l~g~~~~~~l~~~~----~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~  139 (416)
T cd01036          64 GSGIPEVMAYLNGVHLPMYLSIRT----LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL  139 (416)
T ss_pred             CCCHHHHHHHHcCCcccccccHHH----HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh
Confidence            45556666666542  12223333    4789999999999999999999999999999999998765321         


Q ss_pred             -CCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906        107 -PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       107 -p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~  167 (352)
                       .+  ..+...+..+|+||.++++.++|++.+++.+|.+..   ...+.|+++++++|..+.+.+
T Consensus       140 ~~~--~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  202 (416)
T cd01036         140 FRN--PRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY  202 (416)
T ss_pred             ccC--HHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence             11  134467899999999999999999999999998753   346799999999999998875

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>cd01033 ClC_like Putative ClC chloride channel

Probab=98.62  E-value=2.3e-07  Score=92.35  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=97.0

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      +.+-..++..++++ +...+...    +.|++.+.+|+|+|.+.|-..|+..+||++|..+++.++.  +   ..+....
T Consensus        64 g~gi~~v~~~~~~~-~~~~~~~~----~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~---~~~~r~l  133 (388)
T cd01033          64 GKKLVSIKQAVRGK-KRMPFWET----IIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--T---VADRRLL  133 (388)
T ss_pred             CCCcccHHHHhcCC-CCCCHHHH----HHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--C---HHHHHHH
Confidence            33444555555543 23444333    4699999999999999999999999999999999887542  1   1244678


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhcC--Cchh
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFFT--EGLY  172 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg---~~~~~lp~m~~~~~a~~v~~~~~--~~iy  172 (352)
                      ..+|+||-++++.++|++.+++.+|...   +...+.|+++++++|+.+++.+.  ++.|
T Consensus       134 i~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~f  193 (388)
T cd01033         134 VACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLLKGDHPIY  193 (388)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCCcee
Confidence            9999999999999999999999999863   45678999999999999998752  4444

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd01034 EriC_like ClC chloride channel family

Probab=98.60  E-value=3.6e-07  Score=91.04  Aligned_cols=122  Identities=20%  Similarity=0.126  Sum_probs=95.4

Q ss_pred             cCcHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcC
Q psy15906         38 QVPEKSVRTMLHDPKG-----AFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI  112 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~-----~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~  112 (352)
                      |+|-..+...++.+.+     ..++..    ...|++.+.+|+|+|.+.|-..|+..+||++|..+++..+...    ..
T Consensus        53 gsGi~~v~~~~~~~~~~~~~~~~~~r~----~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~----~~  124 (390)
T cd01034          53 GSGIPQVIAALELPSAAARRRLLSLRT----AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG----GL  124 (390)
T ss_pred             CCCHHHHHHHHcccccccccccccHHH----HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc----hH
Confidence            4455566666664332     233444    4789999999999999999999999999999999998764311    13


Q ss_pred             ChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906        113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       113 ~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~  167 (352)
                      +-.....+|+||-++++.++|++.+++.+|....   .....|+++++++|.++++.+
T Consensus       125 ~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~  182 (390)
T cd01034         125 SERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV  182 (390)
T ss_pred             HHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999997642   356778889999998888753

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.50  E-value=1.2e-07  Score=96.63  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             CCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        191 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       191 ~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      .++.++++++|.+++++++++++++++.+.+.+++++++||+|+++..   ++.+|.  .......++.++|++++++++
T Consensus        85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL--~~~~~~~~V~diMt~~~itV~  162 (479)
T PRK07807         85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC--AGVDRFTQVRDVMSTDLVTLP  162 (479)
T ss_pred             HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH--hcCccCCCHHHhccCCceEEC
Confidence            467888999999999999999999999999999999999999876333   233333  222334679999999999888


Q ss_pred             CC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        268 HK------------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       268 ~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      ..            ++.+.+|   ++++++|+|||+||++.....
T Consensus       163 ~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        163 AGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             CCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            44            3344454   368999999999999987654

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.38  E-value=1.2e-06  Score=71.57  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+++|+|.+++.++++++++.++++.|.+.++..+||+|++
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~   98 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD   98 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC
Confidence            78999999999999999999999999999999999999976

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.31  E-value=7.1e-07  Score=74.03  Aligned_cols=92  Identities=15%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c--cCCCCCCcccCCCCCcccCCCCCCC---
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q--SSAGSTDSHKGDTSHKRDSSHKGDA---  272 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~--~~~~~~~~~~~m~~~~~~~~~~~~~---  272 (352)
                      +++.++++++++.++.+.+.+++...+||+|+++..   ++..|...  .  ....+.++.++|++++.+++...+.   
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v   81 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL   81 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence            467889999999999999999999999999875343   22233210  1  1245678999999999888744321   


Q ss_pred             ------------------CcC---CCCCeEEEEEeHHHHHHHH
Q psy15906        273 ------------------SRK---DSPGRLVGLILRSQLIILI  294 (352)
Q Consensus       273 ------------------~~l---~~~g~lvGiItRsdLi~~L  294 (352)
                                        ..+   +++|+++|+|||+|+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence                              011   2358999999999998753

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.30  E-value=1e-06  Score=89.22  Aligned_cols=123  Identities=14%  Similarity=0.161  Sum_probs=84.5

Q ss_pred             hHHHHHHcCCCCCCC-CCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc-
Q psy15906        172 YDIHIQLSGIPLLAW-DPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE-  246 (352)
Q Consensus       172 y~~~l~~~g~p~l~~-~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~-  246 (352)
                      ++.+++.+++-.... .....++.++|+++|.+++.++.++++++++.+.|.+++++.+||+|+++.+   ++..|... 
T Consensus       311 ~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~  390 (454)
T TIGR01137       311 NDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA  390 (454)
T ss_pred             ChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            445566666421111 0123477889999999999999999999999999998899999999875343   33333321 


Q ss_pred             -cc--CCCCCCcccCCCCCcccCCCCCC------------CCcCCCCCeEEEEEeHHHHHHHH
Q psy15906        247 -QS--SAGSTDSHKGDTSHKRDSSHKGD------------ASRKDSPGRLVGLILRSQLIILI  294 (352)
Q Consensus       247 -~~--~~~~~~~~~~m~~~~~~~~~~~~------------~~~l~~~g~lvGiItRsdLi~~L  294 (352)
                       ..  ...+.++.++|.+++.+++...+            ...+.++++++|+|||+|+++.|
T Consensus       391 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       391 LFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCeeEEEECCEEEEEEEHHHHHHhh
Confidence             11  12345788899888777764422            11112468999999999999876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=98.28  E-value=1.7e-06  Score=87.26  Aligned_cols=126  Identities=10%  Similarity=-0.003  Sum_probs=93.2

Q ss_pred             cCcHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCCcCCh
Q psy15906         38 QVPEKSVRTMLHDP--KGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWIDP  114 (352)
Q Consensus        38 ~~~~~~i~~l~~~~--~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p-~~~~~~~  114 (352)
                      |+|=..++..+++.  ++.+++.+    +..|++.+.++.|+|.+-|-..|+..+||++|..+++....... .....+-
T Consensus        72 GsGIp~v~~~l~g~~~~~~l~~r~----~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~r  147 (426)
T cd03683          72 GSGIPEMKTILRGVVLPEYLTFKT----LVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRR  147 (426)
T ss_pred             CCCHHHHHHHHcCCCccccccHHH----HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHH
Confidence            34545556556542  12233333    47899999999999999999999999999999999887643110 0000122


Q ss_pred             hHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906        115 GKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       115 ~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~  167 (352)
                      .....+|+||-++++.++|++.+++.+|....   ...+.|.++++++|..+.+.+
T Consensus       148 r~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~  203 (426)
T cd03683         148 MEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLL  203 (426)
T ss_pred             HHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999997542   356789999999988877653

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>PRK03655 putative ion channel protein; Provisional

Probab=98.24  E-value=9.5e-06  Score=81.51  Aligned_cols=99  Identities=13%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906         64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA  143 (352)
Q Consensus        64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El  143 (352)
                      ...|++.+.++.+.|.+-|-..|+..+||++|..+++.+.   +.   .+.....++|+||-++++.++|++.+++.+|.
T Consensus       100 ~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~---~~---~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~  173 (414)
T PRK03655        100 LPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL---PR---VNRMDWTILASAGTIGALFGTPVAAALIFSQT  173 (414)
T ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc---cC---CChhHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            4678899999999999999999999999999999997662   11   23345678999999999999999999999995


Q ss_pred             -hCCchh-----hHHHHHHHHHHHHHHhhcC
Q psy15906        144 -TGNISF-----GLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       144 -Tg~~~~-----~lp~m~~~~~a~~v~~~~~  168 (352)
                       .+++..     .++..+++.++..++..+.
T Consensus       174 l~~~~~~~~~~~~~~~v~aa~~a~~v~~~~~  204 (414)
T PRK03655        174 LNGSNEVPLWDRLFAPLMAAAAGALTTGLFF  204 (414)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             565442     2333445555777766554

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.22  E-value=2.7e-06  Score=68.64  Aligned_cols=56  Identities=25%  Similarity=0.343  Sum_probs=51.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|..++.++++++++.++++.|.+++.+.+||+|++                                      
T Consensus        55 ~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~--------------------------------------   96 (111)
T cd04603          55 TLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE--------------------------------------   96 (111)
T ss_pred             ccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------------------------------------
Confidence            346899999889999999999999999999999999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           ++++|+||++|+++
T Consensus        97 -----~~~~Giit~~di~~  110 (111)
T cd04603          97 -----GKLVGTIYERELLR  110 (111)
T ss_pred             -----CeEEEEEEhHHhhc
Confidence                 78999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.21  E-value=1.9e-06  Score=87.86  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=80.4

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC--
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK--  269 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~--  269 (352)
                      .+.+++.++|.++++++.++++++++.+.+.+.+.+.+||+|+++.++.+++.+........++.++|+++++++...  
T Consensus        85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~~~s  164 (475)
T TIGR01303        85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPADTE  164 (475)
T ss_pred             HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCCCCc
Confidence            457888999999999999999999999999998898999998753332222222222334567999999999888744  


Q ss_pred             ----------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 ----------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 ----------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                                ++.+.+|   ++++++|+||++||++.....
T Consensus       165 L~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       165 PRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence                      3344444   478999999999999987654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=3.3e-06  Score=68.37  Aligned_cols=56  Identities=20%  Similarity=0.365  Sum_probs=51.6

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|.+++.++.++++++++.+.|.+++.+.+||+|++                                      
T Consensus        58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------------------------   99 (114)
T cd04619          58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN--------------------------------------   99 (114)
T ss_pred             cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC--------------------------------------
Confidence            457899999999999999999999999999999999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           ++++|+|+|+|+++
T Consensus       100 -----~~~~Gvi~~~dl~~  113 (114)
T cd04619         100 -----ARPLGVLNARDALK  113 (114)
T ss_pred             -----CcEEEEEEhHhhcc
Confidence                 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.04  E-value=8.6e-06  Score=82.70  Aligned_cols=104  Identities=16%  Similarity=0.072  Sum_probs=76.8

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHh-----CCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKA-----TSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~-----t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~  264 (352)
                      ...+|+++|++++.+++++++++++.+.+++     .+...+||+|++++.   ++.+|.  ....++.++.++|++++.
T Consensus       129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dL--l~a~~~~~v~~im~~~~~  206 (449)
T TIGR00400       129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDL--ILAKPEEILSSIMRSSVF  206 (449)
T ss_pred             CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHH--hcCCCCCcHHHHhCCCCe
Confidence            4578999999999999999999999999975     233567888876443   233332  233456788999999888


Q ss_pred             cCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        265 DSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       265 ~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      ++...            ++...+|   ++|+++|+||++|++..+.+..
T Consensus       207 ~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~  255 (449)
T TIGR00400       207 SIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA  255 (449)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence            77643            2333344   4689999999999999987643

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.04  E-value=6.8e-06  Score=84.35  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             HHHHHHcCCCCCCCCCC-C--CCcccccccccc---cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC---CCCc---cc
Q psy15906        173 DIHIQLSGIPLLAWDPP-P--LSSNITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDV---EPMT---KH  240 (352)
Q Consensus       173 ~~~l~~~g~p~l~~~~~-~--~l~~i~V~dIM~---~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~---~~~~---~~  240 (352)
                      -.+.+.+|+.+++..-. +  ...-.+|+++|.   .+..++++++++.++.+.|.+.+++.+||+|+   ++.+   +|
T Consensus        69 iala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT  148 (502)
T PRK07107         69 IALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVT  148 (502)
T ss_pred             HHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEE
Confidence            33455566665442211 1  111235788886   34568999999999999999999999999996   2233   34


Q ss_pred             cCCcccccCCCCCCcccCCCC--CcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHH
Q psy15906        241 SSDGAEQSSAGSTDSHKGDTS--HKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~m~~--~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L  294 (352)
                      ..|........+.++.++|+.  +.+++...            ++++.+|   ++++++|+|||+|+++..
T Consensus       149 ~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        149 SRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             cHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            444322223456789999997  55655532            4455666   368999999999999864

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.03  E-value=9.2e-06  Score=66.21  Aligned_cols=58  Identities=29%  Similarity=0.533  Sum_probs=52.4

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++|.+++.++++++++.++++.|.+.+.+.+||+|++                                     
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------------------------------  109 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDED-------------------------------------  109 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-------------------------------------
Confidence            3557999999999999999999999999999999999999975                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLIIL  293 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~  293 (352)
                            |+++|+|+++|++++
T Consensus       110 ------g~~~Gvit~~di~~~  124 (124)
T cd04600         110 ------RRLVGIVTQTDLIAA  124 (124)
T ss_pred             ------CCEEEEEEhHHhhcC
Confidence                  789999999999753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=1.1e-05  Score=65.01  Aligned_cols=56  Identities=18%  Similarity=0.425  Sum_probs=50.0

Q ss_pred             ccccccccccCeEEecCC--CCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~--~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ..++.++|.+++.+++++  +++.++.+.+.+++.+.+||+|++                                    
T Consensus        57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~------------------------------------  100 (115)
T cd04620          57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ------------------------------------  100 (115)
T ss_pred             ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC------------------------------------
Confidence            357889999888889887  789999999999999999999875                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHH
Q psy15906        272 ASRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~  292 (352)
                             |+++|+|||+|+++
T Consensus       101 -------~~~~Gvit~~dl~~  114 (115)
T cd04620         101 -------GQLIGLVTAESIRQ  114 (115)
T ss_pred             -------CCEEEEEEhHHhhc
Confidence                   78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=1.1e-05  Score=65.57  Aligned_cols=42  Identities=14%  Similarity=0.273  Sum_probs=37.9

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..+++++|.+  ++.++++++++.++.+.|.+++.+.+||||++
T Consensus        57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~  100 (118)
T cd04617          57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV  100 (118)
T ss_pred             CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence            5568899985  78899999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.98  E-value=0.00019  Score=72.10  Aligned_cols=62  Identities=13%  Similarity=0.207  Sum_probs=55.7

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +.+.+|+|+|++  ++++++.+++++++.+.+.+++|+.+||++++                                  
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------------------------------  233 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------------------------------  233 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------------------------------
Confidence            668899999996  79999999999999999999999999999865                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                              .++++|+|++.|++..+.
T Consensus       234 --------~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       234 --------IDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             --------CCceEEEEEHHHHHhHhc
Confidence                    257999999999997654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.98  E-value=1.7e-05  Score=63.77  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=37.9

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~   98 (113)
T cd04607          58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEE   98 (113)
T ss_pred             CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC
Confidence            46889999999999999999999999999999999999865

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.98  E-value=1.5e-05  Score=63.68  Aligned_cols=58  Identities=24%  Similarity=0.386  Sum_probs=52.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      +.+++++|.+++..+.+++++.++.+.+.+.+...+||+|++                                      
T Consensus        52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------------------------   93 (109)
T cd04606          52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE--------------------------------------   93 (109)
T ss_pred             cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------------------------------------
Confidence            456889999999999999999999999999999999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLIILI  294 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~L  294 (352)
                           ++++|+|+++|+++++
T Consensus        94 -----~~~~Gvit~~dll~~~  109 (109)
T cd04606          94 -----GRLVGIITVDDVIDVI  109 (109)
T ss_pred             -----CcEEEEEEhHHhhhhC
Confidence                 7899999999998763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=2.8e-05  Score=62.29  Aligned_cols=57  Identities=16%  Similarity=0.387  Sum_probs=51.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...++.++|.+++.++++++++.++.+.+.+++.+.+||+|++                                     
T Consensus        56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-------------------------------------   98 (113)
T cd04615          56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDK-------------------------------------   98 (113)
T ss_pred             cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCC-------------------------------------
Confidence            3457889999999999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            |+++|+|++.|+++
T Consensus        99 ------g~~~Gvvt~~dl~~  112 (113)
T cd04615          99 ------GKVGGIVTEDDILR  112 (113)
T ss_pred             ------CeEEEEEEHHHhhc
Confidence                  78999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=2.8e-05  Score=62.12  Aligned_cols=55  Identities=18%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|.+++.++.++++++++.+.|.+.+...+||+|+                                       
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~---------------------------------------   97 (112)
T cd04625          57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG---------------------------------------   97 (112)
T ss_pred             cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC---------------------------------------
Confidence            34799999998899999999999999999999999999973                                       


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           ++++|+||++|+++
T Consensus        98 -----~~~~Gvvt~~dl~~  111 (112)
T cd04625          98 -----GTLLGVISFHDVAK  111 (112)
T ss_pred             -----CEEEEEEEHHHhhc
Confidence                 68999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=2.3e-05  Score=63.69  Aligned_cols=57  Identities=19%  Similarity=0.444  Sum_probs=51.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...++.++|.+++.++++++++.++.+.+.+.+.+.+||+|++                                     
T Consensus        65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-------------------------------------  107 (122)
T cd04635          65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-------------------------------------  107 (122)
T ss_pred             ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-------------------------------------
Confidence            3567889999999999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            |+++|+|+++|+++
T Consensus       108 ------g~~~Gvit~~dl~~  121 (122)
T cd04635         108 ------DQLVGIVDRHDVLK  121 (122)
T ss_pred             ------CcEEEEEEhHHhhc
Confidence                  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=3.2e-05  Score=63.01  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=47.7

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      ...++|..++.++++++++.++.+.|.+++.+.+||+|++                                        
T Consensus        66 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~----------------------------------------  105 (120)
T cd04641          66 ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN----------------------------------------  105 (120)
T ss_pred             hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC----------------------------------------
Confidence            3456677788999999999999999999999999999875                                        


Q ss_pred             CCCCeEEEEEeHHHHHH
Q psy15906        276 DSPGRLVGLILRSQLII  292 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~  292 (352)
                         |+++|+|||+|++.
T Consensus       106 ---~~~~Givt~~di~~  119 (120)
T cd04641         106 ---KRVEGIISLSDILQ  119 (120)
T ss_pred             ---CCEEEEEEHHHhhc
Confidence               78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=1.5e-05  Score=63.37  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             CCCCCCCCCCCCCcccccccccccC-eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccC
Q psy15906        180 GIPLLAWDPPPLSSNITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKG  258 (352)
Q Consensus       180 g~p~l~~~~~~~l~~i~V~dIM~~~-vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~  258 (352)
                      ++|..+........-++..|+...- +.++.+++++.++.+.|.+++.+.+||+|++                       
T Consensus        26 ~~~Vvd~~~~~~~Givt~~Dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------------------   82 (98)
T cd04618          26 SAPLWDSRKQQFVGMLTITDFILILRLVSIHPERSLFDAALLLLKNKIHRLPVIDPS-----------------------   82 (98)
T ss_pred             eEEEEeCCCCEEEEEEEHHHHhhheeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECC-----------------------
Confidence            3455443222334455666666543 7889999999999999999999999999864                       


Q ss_pred             CCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHH
Q psy15906        259 DTSHKRDSSHKGDASRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       259 m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~  292 (352)
                                         +|+++|+||++|+++
T Consensus        83 -------------------~~~~~giit~~d~~~   97 (98)
T cd04618          83 -------------------TGTGLYILTSRRILK   97 (98)
T ss_pred             -------------------CCCceEEeehhhhhc
Confidence                               278999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.88  E-value=3.2e-05  Score=62.40  Aligned_cols=57  Identities=30%  Similarity=0.489  Sum_probs=51.8

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...++.++|.+++.+++++++++++++.+.+.+.+.+||+|++                                     
T Consensus        65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------------------------------  107 (122)
T cd04585          65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQ-------------------------------------  107 (122)
T ss_pred             cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-------------------------------------
Confidence            3467899999999999999999999999999999999999865                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            |+++|+||+.|+++
T Consensus       108 ------~~~~Gvvt~~di~~  121 (122)
T cd04585         108 ------GRLVGIITESDLFR  121 (122)
T ss_pred             ------CcEEEEEEHHHhhh
Confidence                  78999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.88  E-value=2.7e-05  Score=62.12  Aligned_cols=56  Identities=21%  Similarity=0.376  Sum_probs=51.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|++                                      
T Consensus        52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------------------------------------   93 (108)
T cd04596          52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN--------------------------------------   93 (108)
T ss_pred             cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC--------------------------------------
Confidence            456899999999999999999999999999999999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           |+++|+|+++|+++
T Consensus        94 -----~~~~G~it~~di~~  107 (108)
T cd04596          94 -----KKLLGIISRQDVLK  107 (108)
T ss_pred             -----CCEEEEEEHHHhhc
Confidence                 78999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.88  E-value=3.4e-05  Score=63.13  Aligned_cols=40  Identities=10%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+.++|.+++.++++++++.++++.|.+++.+.+||+|++
T Consensus        69 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  108 (123)
T cd04627          69 RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ  108 (123)
T ss_pred             hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC
Confidence            3456888899999999999999999999999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.85  E-value=2.4e-05  Score=62.54  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.++|.+++.++.+++++.++.+.+.+++.+.+||++++                                       
T Consensus        58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~---------------------------------------   98 (113)
T cd04587          58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS---------------------------------------   98 (113)
T ss_pred             CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC---------------------------------------
Confidence            57899999999999999999999999999999999999875                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          ++++|+|+++|++.
T Consensus        99 ----~~~~Gvvs~~dl~~  112 (113)
T cd04587          99 ----GQVVGLLDVTKLTH  112 (113)
T ss_pred             ----CCEEEEEEHHHhcc
Confidence                68999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.85  E-value=2e-05  Score=80.88  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCC-CCcccCCCCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDT-SHKRDSSHKG  270 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~-~~~~~~~~~~  270 (352)
                      ..++++|.+++++++++++++++.+.+.+++++.+||+|+++++   ++.+|... ....+.++.++|+ ++++++....
T Consensus        87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~~~~~~~V~dim~~~~~v~v~~~~  165 (486)
T PRK05567         87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-ETDLSQPVSEVMTKERLVTVPEGT  165 (486)
T ss_pred             hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-cccCCCcHHHHcCCCCCEEECCCC
Confidence            35789999999999999999999999999999999999976444   34444321 1223467888998 6666666432


Q ss_pred             ------------CCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        271 ------------DASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       271 ------------~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                                  +...++   ++++++|+||++||++.+.
T Consensus       166 sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        166 TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence                        233333   4789999999999998875

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.84  E-value=3.8e-05  Score=60.76  Aligned_cols=55  Identities=24%  Similarity=0.333  Sum_probs=50.2

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      ..++++|.+++.++.+++++.++.+.+.+++.+.+||++++                                       
T Consensus        52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------------------------   92 (107)
T cd04610          52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN---------------------------------------   92 (107)
T ss_pred             ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC---------------------------------------
Confidence            46889999889999999999999999999999999999876                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          |+++|+|+++|+++
T Consensus        93 ----g~~~Gvi~~~di~~  106 (107)
T cd04610          93 ----NNLVGIITNTDVIR  106 (107)
T ss_pred             ----CeEEEEEEHHHhhc
Confidence                78999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.83  E-value=2e-05  Score=80.05  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC---CCc---cccCCcccccCCCCCCcccCCC-CCcccC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE---PMT---KHSSDGAEQSSAGSTDSHKGDT-SHKRDS  266 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~---~~~---~~~~d~~~~~~~~~~~~~~~m~-~~~~~~  266 (352)
                      -.+.++.|.+++.+++++++++++.+.+.+++++++||+|++   +.+   ++.+|... ....+.++.++|+ ++++++
T Consensus        79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-~~~~~~~V~dvm~~~~~~~V  157 (450)
T TIGR01302        79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-VKDKGKPVSEVMTREEVITV  157 (450)
T ss_pred             hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-hhcCCCCHHHhhCCCCCEEE
Confidence            346788899999999999999999999999999999999976   233   34444321 1123567889998 477777


Q ss_pred             CCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        267 SHKG------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       267 ~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ....            +...+|   ++|+++|+||++|+++.+..
T Consensus       158 ~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       158 PEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF  202 (450)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence            6442            233333   47899999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.82  E-value=4.5e-05  Score=60.96  Aligned_cols=55  Identities=18%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.++|.+++.++++++++.++.+.+.+++...+||++++                                       
T Consensus        59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------------------------   99 (114)
T cd04604          59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN---------------------------------------   99 (114)
T ss_pred             CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC---------------------------------------
Confidence            46999999999999999999999999999989999999865                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          ++++|+|++.||++
T Consensus       100 ----~~~iG~it~~di~~  113 (114)
T cd04604         100 ----GRPVGVLHIHDLLR  113 (114)
T ss_pred             ----CCEEEEEEHHHhhc
Confidence                78999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.82  E-value=5e-05  Score=60.36  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=51.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++|.+++.++++++++.++++.+.+.+.+.+||+|++                                     
T Consensus        54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-------------------------------------   96 (111)
T cd04611          54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-------------------------------------   96 (111)
T ss_pred             CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-------------------------------------
Confidence            3567899999999999999999999999999888899999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            |+++|+|+++|+++
T Consensus        97 ------~~~~Gvi~~~di~~  110 (111)
T cd04611          97 ------GELLGLLSQTDLLQ  110 (111)
T ss_pred             ------CcEEEEEEhHHhhc
Confidence                  78999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=4.2e-05  Score=61.61  Aligned_cols=41  Identities=15%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|+
T Consensus        59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   99 (114)
T cd04630          59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN   99 (114)
T ss_pred             ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence            46789999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=6.3e-05  Score=59.75  Aligned_cols=50  Identities=14%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      +++++++++++.++.+.|.+++++++||+|++                                          +++++|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------------------------------------~~~~~G   39 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------------------------------------KQQFVG   39 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------------------------------------CCEEEE
Confidence            46789999999999999999999999999864                                          278999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +||++|+.+.+.
T Consensus        40 ivt~~Dl~~~~~   51 (98)
T cd04618          40 MLTITDFILILR   51 (98)
T ss_pred             EEEHHHHhhhee
Confidence            999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.81  E-value=4.6e-05  Score=61.45  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             cccccccccCeEEecC--CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        195 ITARIVKSHPVICLRP--LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~--~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ..++++|.++...+..  ++++.++++.+.+++...+||||++                                     
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-------------------------------------   99 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-------------------------------------   99 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-------------------------------------
Confidence            3588999987777766  9999999999999999999999865                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            ++++|+|||+|+++
T Consensus       100 ------~~~~Gvit~~di~~  113 (114)
T cd04602         100 ------GELVALVTRSDLKK  113 (114)
T ss_pred             ------CeEEEEEEHHHhhc
Confidence                  78999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.81  E-value=4.7e-05  Score=60.32  Aligned_cols=55  Identities=25%  Similarity=0.440  Sum_probs=50.0

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .+++++|.+++.++++++++.++.+.+.+.+.+.+||++++                                       
T Consensus        54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~---------------------------------------   94 (109)
T cd04583          54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED---------------------------------------   94 (109)
T ss_pred             CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCC---------------------------------------
Confidence            46889999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          |+++|+|+++|+++
T Consensus        95 ----g~~~Gvit~~~l~~  108 (109)
T cd04583          95 ----GKLVGLITRSSLVD  108 (109)
T ss_pred             ----CeEEEEEehHHhhc
Confidence                78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.81  E-value=3.2e-05  Score=64.43  Aligned_cols=55  Identities=22%  Similarity=0.439  Sum_probs=50.6

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..++.++|.+++..+.+++++.++.+.|.+.+.+.+||+| +                                      
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~--------------------------------------  120 (135)
T cd04586          80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G--------------------------------------  120 (135)
T ss_pred             CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C--------------------------------------
Confidence            4579999999999999999999999999999999999998 5                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           |+++|+|||+|+++
T Consensus       121 -----g~~~Gvit~~di~~  134 (135)
T cd04586         121 -----GRLVGIVSRADLLR  134 (135)
T ss_pred             -----CEEEEEEEhHhhhc
Confidence                 78999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.80  E-value=3e-05  Score=80.54  Aligned_cols=80  Identities=16%  Similarity=0.404  Sum_probs=66.3

Q ss_pred             HHHcCCCCCCCCCC------CCCcccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCccccc
Q psy15906        176 IQLSGIPLLAWDPP------PLSSNITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQS  248 (352)
Q Consensus       176 l~~~g~p~l~~~~~------~~l~~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~  248 (352)
                      .+.+++|.+.....      ......+|+++|+ +++++++++++++++.+.|.+++++.+||||++             
T Consensus       221 a~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-------------  287 (546)
T PRK14869        221 AKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-------------  287 (546)
T ss_pred             HHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-------------
Confidence            35667777654321      1245788999999 899999999999999999999999999999976             


Q ss_pred             CCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        249 SAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       249 ~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                                                    |+++|+|+|+|++....++.
T Consensus       288 ------------------------------g~lvGiit~~dl~~~~~~~~  307 (546)
T PRK14869        288 ------------------------------GKVVGVISRYHLLSPVRKKV  307 (546)
T ss_pred             ------------------------------CCEEEEEEHHHhhccccCce
Confidence                                          79999999999999766544

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.80  E-value=4.8e-05  Score=60.34  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             ccccccccccCeEEecC-CCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRP-LETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~-~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ..++.++|.+++..+.+ ++++.++.+.+.+.+++.+||+|++                                     
T Consensus        53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------------------------------   95 (110)
T cd04601          53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-------------------------------------   95 (110)
T ss_pred             CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-------------------------------------
Confidence            45788999877776676 9999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            ++++|+|+++|++.
T Consensus        96 ------~~~~Gvi~~~dil~  109 (110)
T cd04601          96 ------GKLKGLITVKDIEK  109 (110)
T ss_pred             ------CCEEEEEEhhhhhc
Confidence                  78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=6e-05  Score=61.15  Aligned_cols=57  Identities=23%  Similarity=0.428  Sum_probs=51.6

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...++.++|.+++..+++++++.++.+.|.+.+.+.+||+|++                                     
T Consensus        65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------  107 (122)
T cd04803          65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-------------------------------------  107 (122)
T ss_pred             cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-------------------------------------
Confidence            4567899999999999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            |+++|+|++.|++.
T Consensus       108 ------~~~~Gvit~~dl~~  121 (122)
T cd04803         108 ------GTLVGIITRSDFLR  121 (122)
T ss_pred             ------CCEEEEEEHHHhhc
Confidence                  68999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=8.1e-05  Score=60.57  Aligned_cols=52  Identities=27%  Similarity=0.433  Sum_probs=45.9

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.+.+++.+.+||+|++                                           |+++
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------------------------------------~~~~   37 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------------------------------------GKVV   37 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------------------------------------CeEE
Confidence            367889999999999999999999999999865                                           7899


Q ss_pred             EEEeHHHHHHHHHhh
Q psy15906        283 GLILRSQLIILIKHK  297 (352)
Q Consensus       283 GiItRsdLi~~L~~~  297 (352)
                      |++++.|++.++.++
T Consensus        38 Giv~~~dl~~~~~~~   52 (120)
T cd04641          38 DVYSRFDVINLAKEG   52 (120)
T ss_pred             EEEeHHHHHHHHhcC
Confidence            999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.79  E-value=5.2e-05  Score=61.07  Aligned_cols=59  Identities=22%  Similarity=0.506  Sum_probs=51.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|.+++.++.+++++.++++.|.+++...+||+|++.                                     
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~-------------------------------------   99 (115)
T cd04593          57 PSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGN-------------------------------------   99 (115)
T ss_pred             cccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCC-------------------------------------
Confidence            3458889999999999999999999999999999999998650                                     


Q ss_pred             cCCCCCeEEEEEeHHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLIIL  293 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~  293 (352)
                          +|+++|+|+++|++++
T Consensus       100 ----~~~~~Gvit~~di~~~  115 (115)
T cd04593         100 ----PGQVLGLLTRENVLLA  115 (115)
T ss_pred             ----CCeEEEEEEhHHhhcC
Confidence                2789999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=4.7e-05  Score=60.74  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=37.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..+.++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~   96 (111)
T cd04639          56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS   96 (111)
T ss_pred             CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC
Confidence            36889999999999999999999999999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.78  E-value=6.6e-05  Score=59.35  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=48.9

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      +++++|.+++..+.+++++.++.+.+.+.+.+..||+|++                                        
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~----------------------------------------   91 (106)
T cd04582          52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED----------------------------------------   91 (106)
T ss_pred             chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC----------------------------------------
Confidence            4788998888889999999999999999999999999875                                        


Q ss_pred             CCCCeEEEEEeHHHHHH
Q psy15906        276 DSPGRLVGLILRSQLII  292 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~  292 (352)
                         ++++|+|+|+|+++
T Consensus        92 ---~~~~Gvi~~~~l~~  105 (106)
T cd04582          92 ---GRYVGEVTQRSIAD  105 (106)
T ss_pred             ---CcEEEEEEHHHhhc
Confidence               78999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.77  E-value=4.8e-05  Score=60.76  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=50.0

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .+++++|.+++.++.++++++++.+.+.+.+.+.+||++++                                       
T Consensus        58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------------------------   98 (113)
T cd04622          58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD---------------------------------------   98 (113)
T ss_pred             CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC---------------------------------------
Confidence            35899999999999999999999999999999999999865                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          ++++|+|++.|+++
T Consensus        99 ----~~~~G~it~~di~~  112 (113)
T cd04622          99 ----GRLVGIVSLGDLAR  112 (113)
T ss_pred             ----CcEEEEEEHHHhhc
Confidence                78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.77  E-value=6e-05  Score=60.00  Aligned_cols=55  Identities=24%  Similarity=0.358  Sum_probs=50.0

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.++|.+++.++++++++.++.+.+.+.+.+.+||++++                                       
T Consensus        55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------------------------   95 (110)
T cd04588          55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE---------------------------------------   95 (110)
T ss_pred             cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC---------------------------------------
Confidence            56888999899999999999999999999999999999875                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          |+++|+|+++|+++
T Consensus        96 ----~~~~G~i~~~dl~~  109 (110)
T cd04588          96 ----GRPVGIITRTDILR  109 (110)
T ss_pred             ----CCEEEEEEhHHhhc
Confidence                78999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.76  E-value=5.3e-05  Score=61.74  Aligned_cols=56  Identities=25%  Similarity=0.545  Sum_probs=50.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..++.++|.+++..+++++++.++.+.+.+.+.+.+||+|++                                      
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~--------------------------------------  110 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD--------------------------------------  110 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------------------------------------
Confidence            457889999999999999999999999999999999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           |+++|+|+++|+++
T Consensus       111 -----~~~~Gvit~~di~~  124 (125)
T cd04631         111 -----GKLVGIVTERDLLK  124 (125)
T ss_pred             -----CcEEEEEEHHHhhc
Confidence                 68999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.75  E-value=6e-05  Score=60.09  Aligned_cols=56  Identities=21%  Similarity=0.490  Sum_probs=51.4

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC-CCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV-EPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~-~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ..++.++|.+++.++++++++.++.+.+.+.+.+.+||+|+ +                                     
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-------------------------------------   99 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-------------------------------------   99 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-------------------------------------
Confidence            36899999999999999999999999999999999999987 4                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~  292 (352)
                            ++++|+|+++|++.
T Consensus       100 ------~~~~Gvvt~~di~~  113 (114)
T cd04613         100 ------GKLLGILSRSDLLS  113 (114)
T ss_pred             ------CEEEEEEEhHHhhc
Confidence                  68999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.75  E-value=6.7e-05  Score=60.22  Aligned_cols=40  Identities=18%  Similarity=0.418  Sum_probs=37.9

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHh-CCCCeEEEEeCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKA-TSHNGFPIVDVE  235 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~-t~~~~fPVVd~~  235 (352)
                      ++.++|+++++++.+++++.++.+.+.+ .+.+.+||++++
T Consensus        63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~  103 (117)
T COG0517          63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD  103 (117)
T ss_pred             cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence            7999999999999999999999999999 699999999976

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=7.6e-05  Score=62.75  Aligned_cols=41  Identities=20%  Similarity=0.396  Sum_probs=37.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..+++++|.+++..+.+++++.++.+.+.+.+++.+||+++
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~  120 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN  120 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            55799999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.74  E-value=8.6e-05  Score=59.17  Aligned_cols=40  Identities=13%  Similarity=0.276  Sum_probs=37.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEe
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD  233 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd  233 (352)
                      ..+++++|.+++.++++++++.++.+.+.+.+.+.+||++
T Consensus        55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~   94 (110)
T cd04595          55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE   94 (110)
T ss_pred             cCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe
Confidence            4578899999999999999999999999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=8.3e-05  Score=59.37  Aligned_cols=41  Identities=20%  Similarity=0.386  Sum_probs=37.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++..+.+++++.++.+.+.+.+.+.+||+|+
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   97 (112)
T cd04802          57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD   97 (112)
T ss_pred             cCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC
Confidence            45789999999999999999999999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.72  E-value=7.8e-05  Score=76.71  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             ccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        194 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       194 ~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      +.+|+++|+++  ++++++++++.+++++|.+++.+.+||||++                                    
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~------------------------------------  205 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED------------------------------------  205 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence            56799999976  8899999999999999999999999999876                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                             ++++|+|||+|+++.+..
T Consensus       206 -------g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        206 -------GELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             -------CeEEEEEEHHHHHHHhhC
Confidence                   789999999999999875

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=6.8e-05  Score=60.16  Aligned_cols=54  Identities=20%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      +.+++++|.+++.++++++++.++.+.+.+.  +.+||+|++                                      
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~--~~~~Vv~~~--------------------------------------  101 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQ--PFLPVVDDD--------------------------------------  101 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcC--CceeEEeCC--------------------------------------
Confidence            4578999999999999999999999999764  469999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           ++++|+||++|+++
T Consensus       102 -----~~~~Gvit~~dil~  115 (116)
T cd04643         102 -----GIFIGIITRREILK  115 (116)
T ss_pred             -----CeEEEEEEHHHhhc
Confidence                 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.69  E-value=9.7e-05  Score=58.25  Aligned_cols=58  Identities=22%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             ccccccccccc-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        193 SNITARIVKSH-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       193 ~~i~V~dIM~~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      .-++.+|++.. .+.++++++++.++.+.|.+++.+.+||+|++                                    
T Consensus        38 Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~------------------------------------   81 (96)
T cd04614          38 GIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQIPIINGN------------------------------------   81 (96)
T ss_pred             EEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCeeeEECCC------------------------------------
Confidence            44577777754 37889999999999999999999999999875                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHH
Q psy15906        272 ASRKDSPGRLVGLILRSQLIIL  293 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~  293 (352)
                             ++++|+|+|+|++++
T Consensus        82 -------~~~~Giit~~di~~~   96 (96)
T cd04614          82 -------DKLIGLLRDHDLLKP   96 (96)
T ss_pred             -------CcEEEEEEHHHhhcC
Confidence                   689999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.69  E-value=6.6e-05  Score=61.84  Aligned_cols=58  Identities=24%  Similarity=0.270  Sum_probs=47.7

Q ss_pred             cccccccccccCeEEe------cCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccC
Q psy15906        193 SNITARIVKSHPVICL------RPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l------~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~  266 (352)
                      ...+++++|.++...+      .+++++.++++.|.+++.+.+||+|++                               
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~-------------------------------  110 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE-------------------------------  110 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC-------------------------------
Confidence            3567899998765433      268899999999999999999999874                               


Q ss_pred             CCCCCCCcCCCCCeEEEEEeHHHHHH
Q psy15906        267 SHKGDASRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       267 ~~~~~~~~l~~~g~lvGiItRsdLi~  292 (352)
                                 +|+++|+||++|+++
T Consensus       111 -----------~~~~~G~it~~di~~  125 (126)
T cd04640         111 -----------HHQIRGIISTSDIAR  125 (126)
T ss_pred             -----------CCEEEEEEeHHHHhh
Confidence                       268999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.69  E-value=0.0001  Score=58.88  Aligned_cols=56  Identities=20%  Similarity=0.346  Sum_probs=50.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      +.+++++|.+++.++.+++++.++.+.+.+.+....||++++                                      
T Consensus        56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------------------------   97 (112)
T cd04624          56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG--------------------------------------   97 (112)
T ss_pred             ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC--------------------------------------
Confidence            346889999999999999999999999998888999999875                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           |+++|+|+++|+++
T Consensus        98 -----g~~~Gilt~~dl~~  111 (112)
T cd04624          98 -----GELVGVISIRDLVR  111 (112)
T ss_pred             -----CcEEEEEEHHHhcc
Confidence                 78999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=8.6e-05  Score=61.03  Aligned_cols=58  Identities=17%  Similarity=0.371  Sum_probs=50.3

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..++.++|.++++++++++++.++.+.|.+++...+||++++                                      
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~--------------------------------------  111 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD--------------------------------------  111 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC--------------------------------------
Confidence            457889999999999999999999999999988999998642                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                         ++++++|+||++|+++
T Consensus       112 ---~~~~~~Gvit~~di~~  127 (128)
T cd04632         112 ---DDTKVVGILTKKDVLR  127 (128)
T ss_pred             ---CCCcEEEEEEhHhhhc
Confidence               0378999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.67  E-value=0.00012  Score=58.27  Aligned_cols=54  Identities=20%  Similarity=0.377  Sum_probs=49.1

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      +++++|.+++.++.++++++++.+.+.+.+.+.+||++++                                        
T Consensus        56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----------------------------------------   95 (110)
T cd04605          56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAE----------------------------------------   95 (110)
T ss_pred             CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC----------------------------------------
Confidence            4888998899999999999999999999888999999875                                        


Q ss_pred             CCCCeEEEEEeHHHHHH
Q psy15906        276 DSPGRLVGLILRSQLII  292 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~  292 (352)
                         |+++|+|+|.|+++
T Consensus        96 ---~~~~G~v~~~di~~  109 (110)
T cd04605          96 ---NRVIGIITSEDISK  109 (110)
T ss_pred             ---CcEEEEEEHHHhhh
Confidence               78999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.67  E-value=9.9e-05  Score=76.70  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=55.4

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+|+|+|.++++++++++++.++++.|.+++.+.+||+|++                                      
T Consensus        67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------------------------  108 (546)
T PRK14869         67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------------------------------------  108 (546)
T ss_pred             CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            368999999999999999999999999999999999999976                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        274 RKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                           |+++|+|+++|+.+.+.+
T Consensus       109 -----g~l~Givt~~di~~~~~~  126 (546)
T PRK14869        109 -----GKLLGLVSLSDLARAYMD  126 (546)
T ss_pred             -----CEEEEEEEHHHHHHHHHh
Confidence                 799999999999987754

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.67  E-value=6.5e-05  Score=76.41  Aligned_cols=105  Identities=11%  Similarity=0.122  Sum_probs=84.8

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCcc---cc-cCCCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGA---EQ-SSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~---~~-~~~~~~~~~~~m~~~~~  264 (352)
                      +-..++.++|+.+.+++++..++.++.+.|.+.+.+..-|++++... +  |-+|..   +. ..+...++.++||++++
T Consensus       146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~  225 (610)
T COG2905         146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVI  225 (610)
T ss_pred             HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCce
Confidence            34568999999999999999999999999999998888888765333 2  333332   12 23557899999999999


Q ss_pred             cCC------------CCCCCCcCC--CCCeEEEEEeHHHHHHHHHh
Q psy15906        265 DSS------------HKGDASRKD--SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       265 ~~~------------~~~~~~~l~--~~g~lvGiItRsdLi~~L~~  296 (352)
                      +++            .++.+.++|  ++|+.+|+||-+|+++....
T Consensus       226 svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         226 SVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             eecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhCC
Confidence            998            447899888  58999999999999998764

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.66  E-value=9.9e-05  Score=58.55  Aligned_cols=38  Identities=16%  Similarity=0.125  Sum_probs=35.1

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEe
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD  233 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd  233 (352)
                      ++.++|.++..++++++++.++.+.+.+++.+.+||+|
T Consensus        51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~   88 (104)
T cd04594          51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD   88 (104)
T ss_pred             chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE
Confidence            47788988899999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.65  E-value=0.00018  Score=47.61  Aligned_cols=47  Identities=32%  Similarity=0.639  Sum_probs=42.0

Q ss_pred             eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906        205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL  284 (352)
Q Consensus       205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi  284 (352)
                      +.++.+++++.++.+.+.+.+++.+||++++                                           ++++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g~   38 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------------------------------------GRLVGI   38 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------------------------------------CeEEEE
Confidence            4678899999999999999999999999875                                           689999


Q ss_pred             EeHHHHHHHH
Q psy15906        285 ILRSQLIILI  294 (352)
Q Consensus       285 ItRsdLi~~L  294 (352)
                      +++.++.+.+
T Consensus        39 i~~~~l~~~~   48 (49)
T smart00116       39 VTRRDIIKAL   48 (49)
T ss_pred             EEHHHHHHhh
Confidence            9999998775

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.65  E-value=0.00013  Score=59.98  Aligned_cols=53  Identities=32%  Similarity=0.441  Sum_probs=47.2

Q ss_pred             cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906        197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD  276 (352)
Q Consensus       197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~  276 (352)
                      +.+.|.+++.++++++++.++.+.|.+++.+.+||+|++                                         
T Consensus        73 ~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------------------------------------  111 (126)
T cd04642          73 SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------------------------------------  111 (126)
T ss_pred             ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------------------------------------
Confidence            346778889999999999999999999988999999875                                         


Q ss_pred             CCCeEEEEEeHHHHHH
Q psy15906        277 SPGRLVGLILRSQLII  292 (352)
Q Consensus       277 ~~g~lvGiItRsdLi~  292 (352)
                        ++++|+||++|+++
T Consensus       112 --~~~~Giit~~dil~  125 (126)
T cd04642         112 --GKPIGVITLTDIIS  125 (126)
T ss_pred             --CCEEEEEEHHHHhc
Confidence              78999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.63  E-value=0.00017  Score=57.37  Aligned_cols=41  Identities=20%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++.++.+++++.++++.+.+.+.+.+||+++
T Consensus        58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence            45799999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.62  E-value=0.00011  Score=58.78  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=45.0

Q ss_pred             ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCC
Q psy15906        200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPG  279 (352)
Q Consensus       200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g  279 (352)
                      +|.+++.++++++++.++.+.|.+.+.+.+||++ +                                           |
T Consensus        56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~-------------------------------------------~   91 (105)
T cd04591          56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-E-------------------------------------------G   91 (105)
T ss_pred             hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-C-------------------------------------------C
Confidence            8888899999999999999999999999999995 3                                           6


Q ss_pred             eEEEEEeHHHHHH
Q psy15906        280 RLVGLILRSQLII  292 (352)
Q Consensus       280 ~lvGiItRsdLi~  292 (352)
                      +++|+|+|+|+++
T Consensus        92 ~~~Gvvt~~dl~~  104 (105)
T cd04591          92 RLVGIITRKDLLK  104 (105)
T ss_pred             eEEEEEEhhhhhc
Confidence            8999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.61  E-value=0.00013  Score=58.09  Aligned_cols=54  Identities=13%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      ..+.++|. ++.++.+++++.++.+.+.+++.+.+||+|++                                       
T Consensus        57 ~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------------------------   96 (111)
T cd04590          57 LDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY---------------------------------------   96 (111)
T ss_pred             CCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC---------------------------------------
Confidence            34666664 67889999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          |+++|+|||+|++.
T Consensus        97 ----~~~~Gvit~~di~~  110 (111)
T cd04590          97 ----GGTAGLVTLEDILE  110 (111)
T ss_pred             ----CCEEEEeEHHHhhc
Confidence                78999999999974

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.61  E-value=0.00017  Score=57.26  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=50.2

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.++|.+++.++.+++++.++.+.+.+.+.+.+||+|++                                       
T Consensus        56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------------------------   96 (111)
T cd04612          56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDS---------------------------------------   96 (111)
T ss_pred             cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC---------------------------------------
Confidence            56889999999999999999999999999999999999865                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          ++++|+|++.|+++
T Consensus        97 ----~~~~G~it~~di~~  110 (111)
T cd04612          97 ----GRLVGIVSRSDLLR  110 (111)
T ss_pred             ----CCEEEEEEHHHhhh
Confidence                68999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.60  E-value=0.00015  Score=58.90  Aligned_cols=55  Identities=25%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.++|.+++..+++++++.++.+.+.+.+.+.+||+|++                                       
T Consensus        67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~---------------------------------------  107 (122)
T cd04637          67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN---------------------------------------  107 (122)
T ss_pred             hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC---------------------------------------
Confidence            46889999999999999999999999999999999999875                                       


Q ss_pred             CCCCCeEEEEEeHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLII  292 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~  292 (352)
                          ++++|+|+++|+++
T Consensus       108 ----~~~~Gvit~~dll~  121 (122)
T cd04637         108 ----GQLIGIITWKDLLK  121 (122)
T ss_pred             ----CCEEEEEEHHHhhh
Confidence                68999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.60  E-value=0.00018  Score=57.32  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=37.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..+++++|.+++..+++++++.++.+.+.+++...+||+|+
T Consensus        56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04589          56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG   96 (111)
T ss_pred             CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence            44688999999999999999999999999999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.59  E-value=0.00013  Score=58.42  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++.++.+++++.++.+.+.+++.+.+||+|+
T Consensus        59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   99 (114)
T cd04629          59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD   99 (114)
T ss_pred             CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence            45788999989999999999999999999999899999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=97.58  E-value=0.002  Score=64.82  Aligned_cols=62  Identities=8%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +.+.+|+|+|++  ++.+++.+.+++++.+.+.+++|+.+||.+++                                  
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----------------------------------  229 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----------------------------------  229 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----------------------------------
Confidence            678899999985  78999999999999999999999999999865                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                              ...++|+|...|++..+.
T Consensus       230 --------~D~IiGiv~~kDll~~~~  247 (413)
T PRK11573        230 --------LDDAISMLRVREAYRLMT  247 (413)
T ss_pred             --------CCceEEEEEHHHHHHHhh
Confidence                    256899999999987654

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.58  E-value=0.00019  Score=68.91  Aligned_cols=62  Identities=18%  Similarity=0.446  Sum_probs=54.8

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +...+|+++|++  ++.+++.+++++++.+.+.+++|+.|||++++                                  
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------------------------------  109 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------------------------------  109 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------------------------------
Confidence            467799999997  69999999999999999999999999999865                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                              .++++|+|+..|++..+.
T Consensus       110 --------~d~iiGiv~~kDll~~~~  127 (292)
T PRK15094        110 --------KDHIEGILMAKDLLPFMR  127 (292)
T ss_pred             --------CCcEEEEEEHHHHHhHhh
Confidence                    257999999999987653

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.56  E-value=0.00012  Score=58.87  Aligned_cols=42  Identities=12%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..++.++|.+  ++.++.+++++.++.+.|.+.+.+.+||+|++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~   99 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS   99 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC
Confidence            4568889974  36689999999999999999999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.55  E-value=0.00025  Score=56.42  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=37.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++.++++++++.++.+.+.+.+.+.+||+++
T Consensus        56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04800          56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD   96 (111)
T ss_pred             cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            35789999999999999999999999999999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.55  E-value=0.00023  Score=58.97  Aligned_cols=40  Identities=15%  Similarity=0.284  Sum_probs=36.9

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      .++.++|.+++..+.+++++.++.+.+.+.+.+.+||+|+
T Consensus        78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  117 (132)
T cd04636          78 KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD  117 (132)
T ss_pred             CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence            4789999999999999999999999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00021  Score=57.01  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++.++.+++++.++.+.|.+++....||+|+
T Consensus        56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04626          56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD   96 (111)
T ss_pred             cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            34688999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.52  E-value=0.00035  Score=58.94  Aligned_cols=51  Identities=14%  Similarity=0.251  Sum_probs=45.8

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.|.+.+.+.+||+|++                                           |+++|
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-------------------------------------------g~l~G   38 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-------------------------------------------DFLEG   38 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CeEEE
Confidence            57889999999999999998899999999976                                           78999


Q ss_pred             EEeHHHHHHHHHhh
Q psy15906        284 LILRSQLIILIKHK  297 (352)
Q Consensus       284 iItRsdLi~~L~~~  297 (352)
                      +|+..|+++.+...
T Consensus        39 ivt~~Dl~~~~~~~   52 (133)
T cd04592          39 ILTLGDIQRFLFTN   52 (133)
T ss_pred             EEEHHHHHHHHhhc
Confidence            99999999988643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.52  E-value=0.00026  Score=55.64  Aligned_cols=40  Identities=8%  Similarity=0.155  Sum_probs=36.8

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      .++.++|.+++.++++++++.++.+.+.+++...+||+|+
T Consensus        51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   90 (105)
T cd04599          51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE   90 (105)
T ss_pred             CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence            3588999999999999999999999999999999999984

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.0002  Score=57.92  Aligned_cols=42  Identities=24%  Similarity=0.513  Sum_probs=38.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ...++.++|.+++.++++++++.++.+.+.+.+.+.+||+|+
T Consensus        65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (121)
T cd04633          65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD  106 (121)
T ss_pred             hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence            356788999999999999999999999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.49  E-value=0.00018  Score=67.52  Aligned_cols=59  Identities=10%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             ccccccccccC-eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        194 NITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       194 ~i~V~dIM~~~-vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      .++|+|+|.++ +.+++++++++++.+.+.+.+++.+||+|++                                     
T Consensus       154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------------------------------  196 (268)
T TIGR00393       154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------------------------------  196 (268)
T ss_pred             hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------------------------------
Confidence            57999999988 9999999999999999998899999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                            |+++|+|+++|+.+.+.
T Consensus       197 ------g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       197 ------NQLVGVFTDGDLRRALL  213 (268)
T ss_pred             ------CCEEEEEEcHHHHHHHh
Confidence                  78999999999998754

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.45  E-value=0.00028  Score=56.95  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=38.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ...++.++|.+++.++.++++++++.+.+.+.+++.+||+++
T Consensus        65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~  106 (121)
T cd04584          65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED  106 (121)
T ss_pred             cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence            356789999999999999999999999999999999999974

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.43  E-value=0.00058  Score=54.20  Aligned_cols=51  Identities=22%  Similarity=0.452  Sum_probs=45.2

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.+.+++++.+||+|++                                           |+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   38 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------------------------------------GRLV   38 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------------------------------------CcEE
Confidence            567889999999999999999899999999865                                           7999


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|+++|++..+..
T Consensus        39 G~v~~~~l~~~~~~   52 (110)
T cd04605          39 GIVTSWDISKAVAR   52 (110)
T ss_pred             EEEeHHHHHHHHhh
Confidence            99999999877643

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.43  E-value=0.00054  Score=56.23  Aligned_cols=49  Identities=31%  Similarity=0.617  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+++.+.+++++||+|++                                           ++++|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------------~~~~G   38 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------------------------------------GKLTG   38 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CcEEE
Confidence            56788999999999999999999999999976                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.|+..++.
T Consensus        39 ~it~~dl~~~~~   50 (128)
T cd04632          39 IVTRHDIVDFVV   50 (128)
T ss_pred             EEEHHHHHHHHh
Confidence            999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.43  E-value=0.00047  Score=54.84  Aligned_cols=51  Identities=25%  Similarity=0.540  Sum_probs=44.9

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.+.+.+++.+||+|++                                           ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~   37 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------------------------------------GRLV   37 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------------------------------------CCEE
Confidence            356789999999999999999899999999875                                           7899


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|++.|+...+.+
T Consensus        38 G~v~~~~l~~~~~~   51 (114)
T cd04613          38 GIVSLDDIREILFD   51 (114)
T ss_pred             EEEEHHHHHHHHhc
Confidence            99999999887643

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00061  Score=54.09  Aligned_cols=50  Identities=26%  Similarity=0.418  Sum_probs=44.6

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------------------------------------GRLVG   38 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEEE
Confidence            56778999999999999999999999999875                                           68999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.|+++++..
T Consensus        39 iv~~~~l~~~~~~   51 (113)
T cd04623          39 IFSERDIVRKVAL   51 (113)
T ss_pred             EEehHHHHHHHhh
Confidence            9999999987754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.40  E-value=0.00024  Score=73.07  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ..+++++|++  +++++++++++.++.++|.+++.+.+||||++                                    
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~------------------------------------  201 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN------------------------------------  201 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC------------------------------------
Confidence            4679999997  89999999999999999999999999999976                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                             ++++|+|||+|+++...
T Consensus       202 -------g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        202 -------GELVALVSRSDLKKNRG  218 (495)
T ss_pred             -------CcEEEEEEehHhhhccc
Confidence                   68999999999998764

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.40  E-value=0.00035  Score=55.24  Aligned_cols=54  Identities=24%  Similarity=0.456  Sum_probs=45.8

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..++.++|.+++.++++++++.++.+++.+ .+ ..|||+++                                      
T Consensus        56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~--------------------------------------   95 (110)
T cd04609          56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEG--------------------------------------   95 (110)
T ss_pred             CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecC--------------------------------------
Confidence            356889999899999999999999999988 33 47888865                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHH
Q psy15906        274 RKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~  292 (352)
                           ++++|+||++|+++
T Consensus        96 -----~~~~Gvvt~~di~~  109 (110)
T cd04609          96 -----GKFVGIITRADLLK  109 (110)
T ss_pred             -----CeEEEEEeHHHhhc
Confidence                 78999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.37  E-value=0.00057  Score=55.50  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=45.4

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.++++++++.++.+.+.+.+++.+||+|++                                           |+++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~   38 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------------------------------------RRLV   38 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------------------------------------CCEE
Confidence            577889999999999999999899999999875                                           7899


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|++.||+..+..
T Consensus        39 Giv~~~~l~~~~~~   52 (124)
T cd04600          39 GIVTQRDLLRHARP   52 (124)
T ss_pred             EEEEHHHHHhhhcc
Confidence            99999999887653

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.36  E-value=0.00046  Score=53.92  Aligned_cols=53  Identities=26%  Similarity=0.481  Sum_probs=48.6

Q ss_pred             cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCC
Q psy15906        197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKD  276 (352)
Q Consensus       197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~  276 (352)
                      +.++|..++.++++++++.++.+.+.+.+.+.+||+|++                                         
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------------------------------------   98 (113)
T cd02205          60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-----------------------------------------   98 (113)
T ss_pred             HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-----------------------------------------
Confidence            678899999999999999999999999999999999875                                         


Q ss_pred             CCCeEEEEEeHHHHHH
Q psy15906        277 SPGRLVGLILRSQLII  292 (352)
Q Consensus       277 ~~g~lvGiItRsdLi~  292 (352)
                        ++++|+|+++|+++
T Consensus        99 --~~~~G~i~~~dl~~  112 (113)
T cd02205          99 --GRLVGIVTRSDILR  112 (113)
T ss_pred             --CcEEEEEEHHHhhc
Confidence              78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.34  E-value=0.00055  Score=56.88  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=44.6

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.++.+++++.++.+.+.+++++.+||+|++                                           ++++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-------------------------------------------~~~~   38 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-------------------------------------------GRLV   38 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-------------------------------------------CCEE
Confidence            567889999999999999999999999999865                                           7899


Q ss_pred             EEEeHHHHHHHHH
Q psy15906        283 GLILRSQLIILIK  295 (352)
Q Consensus       283 GiItRsdLi~~L~  295 (352)
                      |+|++.|+.+.+.
T Consensus        39 Gvi~~~dl~~~~~   51 (135)
T cd04586          39 GIVSEGDLLRRAE   51 (135)
T ss_pred             EEeeHHHHHHHhc
Confidence            9999999987654

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00084  Score=53.44  Aligned_cols=50  Identities=14%  Similarity=0.384  Sum_probs=44.3

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   38 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------------------------------------ERPIG   38 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CCEEE
Confidence            46778999999999999998889999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.|+++.+.+
T Consensus        39 ~v~~~~l~~~~~~   51 (112)
T cd04624          39 IVTERDIVRAVAA   51 (112)
T ss_pred             EeeHHHHHHHHhc
Confidence            9999999887654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.31  E-value=0.0009  Score=53.89  Aligned_cols=49  Identities=12%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906        205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL  284 (352)
Q Consensus       205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi  284 (352)
                      +.++++++++.++.+.+.+.+++.+||+|++                                           |+++|+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------------------------------------g~~~G~   39 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------------------------------------GKLAGV   39 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEEE
Confidence            5678999999999999999999999999876                                           789999


Q ss_pred             EeHHHHHHHHHh
Q psy15906        285 ILRSQLIILIKH  296 (352)
Q Consensus       285 ItRsdLi~~L~~  296 (352)
                      |+++|+.+++.+
T Consensus        40 vt~~dl~~~~~~   51 (114)
T cd04619          40 LTKTDVVRQMGR   51 (114)
T ss_pred             EehHHHHHHHhh
Confidence            999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.31  E-value=0.00069  Score=53.31  Aligned_cols=49  Identities=18%  Similarity=0.351  Sum_probs=43.6

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      ++++++++++++.++.+.|.+.+...+||+|++                                           |+++
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   37 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDD-------------------------------------------GKLS   37 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEE
Confidence            367889999999999999988889999999875                                           7899


Q ss_pred             EEEeHHHHHHHH
Q psy15906        283 GLILRSQLIILI  294 (352)
Q Consensus       283 GiItRsdLi~~L  294 (352)
                      |+++.+|+....
T Consensus        38 Giv~~~dl~~~~   49 (96)
T cd04614          38 GIITERDLIAKS   49 (96)
T ss_pred             EEEEHHHHhcCC
Confidence            999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.30  E-value=0.00081  Score=54.67  Aligned_cols=52  Identities=19%  Similarity=0.442  Sum_probs=45.3

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++.++.++.+.+.+.+++.+||+|++                                          +|+++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------------------------------------~~~~~   38 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------------------------------------TGKLV   38 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------------------------------------CCEEE
Confidence            356788999999999999999999999999874                                          27999


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|++.|+...+.+
T Consensus        39 G~v~~~dl~~~~~~   52 (125)
T cd04631          39 GIITATDILKYLGG   52 (125)
T ss_pred             EEEEHHHHHHHhhc
Confidence            99999999987754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.28  E-value=0.00066  Score=54.68  Aligned_cols=56  Identities=14%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCC---eEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHN---GFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~---~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      ..+++++|.+++..+.+++++.++.+.|.+.+..   ..|||+++                                   
T Consensus        60 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------------------------------  104 (119)
T cd04598          60 KKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------------------------------  104 (119)
T ss_pred             CCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------------------------------
Confidence            4569999999999999999999999999877642   44688765                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHH
Q psy15906        271 DASRKDSPGRLVGLILRSQLII  292 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~  292 (352)
                              |+++|+|++.|+++
T Consensus       105 --------~~~~Gvvs~~di~~  118 (119)
T cd04598         105 --------GRYLGIGTVKDLLR  118 (119)
T ss_pred             --------CeEEEEEEHHHHhc
Confidence                    78999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.0009  Score=53.18  Aligned_cols=50  Identities=38%  Similarity=0.624  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------------------------------------GHLVG   38 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CcEEE
Confidence            56778999999999999988889999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.|+.+.+..
T Consensus        39 ~v~~~~l~~~~~~   51 (111)
T cd04639          39 LLTRDDLIRALAE   51 (111)
T ss_pred             EeeHHHHHHHHHh
Confidence            9999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.00074  Score=53.40  Aligned_cols=39  Identities=13%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      .+.++|.+++.++.+++++.++.+.+.+.+.+.+||+|+
T Consensus        53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   91 (106)
T cd04638          53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD   91 (106)
T ss_pred             hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            467889888999999999999999999999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.00088  Score=54.20  Aligned_cols=50  Identities=22%  Similarity=0.497  Sum_probs=44.5

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++.+++++.++.+.+.+.+++.+||+|++                                           |+++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------------------------------------GKLVG   38 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------------------------------------CCEEE
Confidence            56788999999999999999999999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +++++|+.+.+..
T Consensus        39 ~v~~~~l~~~~~~   51 (122)
T cd04803          39 LLTQRDLLRAALS   51 (122)
T ss_pred             EEEHHHHHHHhcc
Confidence            9999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00047  Score=69.77  Aligned_cols=105  Identities=15%  Similarity=0.066  Sum_probs=81.7

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhC-----CCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t-----~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      .-+++.+|+..+++++++.|++++++.+++.     ....+.|||+++.. +..+-.....+.++..+.++|.+++.++.
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~~~~~V~  210 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMEDDVVSVL  210 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcccceeec
Confidence            4479999999999999999999999999854     45678999988534 22333334667788999999999998888


Q ss_pred             CCCC------------CCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        268 HKGD------------ASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       268 ~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      ...+            .--+|   ++++++|+||-.|++..+.+..
T Consensus       211 ~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa  256 (451)
T COG2239         211 ADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA  256 (451)
T ss_pred             ccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence            5543            22234   5789999999999999997543

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.00098  Score=55.14  Aligned_cols=50  Identities=32%  Similarity=0.587  Sum_probs=44.7

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++++||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------------------------------------GRVVG   38 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------------------------------------CCEEE
Confidence            56788999999999999998889999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.|+...+.+
T Consensus        39 ~i~~~~l~~~~~~   51 (132)
T cd04636          39 IVSEGDLIRKIYK   51 (132)
T ss_pred             EEeHHHHHHHHhc
Confidence            9999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.17  E-value=0.0015  Score=52.45  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=44.4

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------------------------------------GGVVG   38 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------------------------------------CCEEE
Confidence            56678999999999999999899999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      ++++.||.+.+.+
T Consensus        39 ~v~~~dl~~~~~~   51 (115)
T cd04593          39 IITLPDLLRALEA   51 (115)
T ss_pred             EEEHHHHHHHHhc
Confidence            9999999987754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.0017  Score=50.63  Aligned_cols=51  Identities=27%  Similarity=0.567  Sum_probs=45.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++.++++.++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G   38 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------------------------------------GRLVG   38 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------------------------------------CCEEE
Confidence            46778999999999999999889999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhh
Q psy15906        284 LILRSQLIILIKHK  297 (352)
Q Consensus       284 iItRsdLi~~L~~~  297 (352)
                      +++++|++..+.+.
T Consensus        39 ~v~~~~l~~~~~~~   52 (113)
T cd02205          39 IVTERDLLRALAEG   52 (113)
T ss_pred             EEeHHHHHHHHHhc
Confidence            99999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.16  E-value=0.00081  Score=64.59  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=53.4

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .+++++|.++ .++++++++.++++.|++.+.+..||||+.                                       
T Consensus       133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~---------------------------------------  172 (292)
T PRK15094        133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEF---------------------------------------  172 (292)
T ss_pred             CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCC---------------------------------------
Confidence            3478899765 489999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906        275 KDSPGRLVGLILRSQLIILIKHKIY  299 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~~L~~~~~  299 (352)
                          |.++|+||++|++..+...+.
T Consensus       173 ----G~viGiVTleDIle~ivGei~  193 (292)
T PRK15094        173 ----GGVSGLVTIEDILELIVGEIE  193 (292)
T ss_pred             ----CCEEEEeEHHHHHHHHhCCCc
Confidence                779999999999999986554

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.16  E-value=0.0014  Score=52.52  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRL  281 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~l  281 (352)
                      +++.++++++++.++.+.+.+.+ ...+||+|++                                           +++
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~   37 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-------------------------------------------GRY   37 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-------------------------------------------CcE
Confidence            35678899999999999987664 7889999875                                           789


Q ss_pred             EEEEeHHHHHHHHH
Q psy15906        282 VGLILRSQLIILIK  295 (352)
Q Consensus       282 vGiItRsdLi~~L~  295 (352)
                      +|+|+++|++....
T Consensus        38 ~G~v~~~dl~~~~~   51 (114)
T cd04801          38 VGIISLADLRAIPT   51 (114)
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.001  Score=53.78  Aligned_cols=48  Identities=25%  Similarity=0.540  Sum_probs=42.9

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.+.+.+++.+||+|++                                           |+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   37 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-------------------------------------------GELI   37 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-------------------------------------------CcEE
Confidence            356789999999999999998899999999865                                           7899


Q ss_pred             EEEeHHHHHHH
Q psy15906        283 GLILRSQLIIL  293 (352)
Q Consensus       283 GiItRsdLi~~  293 (352)
                      |++++.|++..
T Consensus        38 G~v~~~~l~~~   48 (122)
T cd04635          38 GIITRRDIIRA   48 (122)
T ss_pred             EEEEcHHHHhh
Confidence            99999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.0016  Score=52.10  Aligned_cols=49  Identities=24%  Similarity=0.413  Sum_probs=43.9

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      +++++++++++.++.+.+.+.+.+.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------------------------------------GKYVG   38 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------------------------------------CcEEE
Confidence            46789999999999999999899999999875                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|+.+|+.+.+.
T Consensus        39 iv~~~dl~~~~~   50 (116)
T cd04643          39 TISLTDILWKLK   50 (116)
T ss_pred             EEeHHHHHHHhh
Confidence            999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.14  E-value=0.001  Score=65.76  Aligned_cols=59  Identities=17%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      .+.+.|.+.+.++++++++.+++..+.++++. +||||++                                        
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----------------------------------------  341 (363)
T TIGR01186       303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED----------------------------------------  341 (363)
T ss_pred             chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC----------------------------------------
Confidence            46777888888999999999999999999988 9999976                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        276 DSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                         |+++|+|+|.+++.+|.+..
T Consensus       342 ---~~~~g~i~~~~~~~~~~~~~  361 (363)
T TIGR01186       342 ---QRLVGIVTRGSLVDALYDSR  361 (363)
T ss_pred             ---CcEEEEEEHHHHHHHHHhhc
Confidence               89999999999999997654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.13  E-value=0.0019  Score=52.34  Aligned_cols=49  Identities=27%  Similarity=0.358  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++++++++.++.+.+...+.+.+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------------------------------------GDLVG   38 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence            56789999999999999988888999999975                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.|+.++..
T Consensus        39 ivt~~dl~~~~~   50 (118)
T cd04617          39 VVSRKDLLKASI   50 (118)
T ss_pred             EEEHHHHHHHHH
Confidence            999999998774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.12  E-value=0.0015  Score=51.35  Aligned_cols=48  Identities=17%  Similarity=0.412  Sum_probs=42.6

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++.+++++.+.+.+.+++.+||+|++                                           |+++|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-------------------------------------------g~~~G   38 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-------------------------------------------GQPLG   38 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEE
Confidence            56788999999999999998889999999865                                           78999


Q ss_pred             EEeHHHHHHHH
Q psy15906        284 LILRSQLIILI  294 (352)
Q Consensus       284 iItRsdLi~~L  294 (352)
                      ++++.|+.+..
T Consensus        39 iv~~~dl~~~~   49 (106)
T cd04582          39 FVTRREAARAS   49 (106)
T ss_pred             EEeHHHHHHhc
Confidence            99999998764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.10  E-value=0.0012  Score=54.05  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.|.+++...+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-------------------------------------------~~~~G   38 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-------------------------------------------GKLIG   38 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-------------------------------------------CcEEE
Confidence            46789999999999999998889999999875                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.|+.....
T Consensus        39 iv~~~dl~~~~~   50 (126)
T cd04642          39 NISASDLKGLLL   50 (126)
T ss_pred             EEEHHHhhhhhc
Confidence            999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.10  E-value=0.0018  Score=51.56  Aligned_cols=49  Identities=12%  Similarity=0.143  Sum_probs=43.4

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++..++++++++++.+.+.+++++.+||+|++                                           |+++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   38 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------------------------------------EKLKG   38 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------------------------------------CCEEE
Confidence            56788999999999999999999999999875                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      ++++.|++....
T Consensus        39 ~v~~~dl~~~~~   50 (111)
T cd04626          39 VVTFTDILDLDL   50 (111)
T ss_pred             EEehHHhHHHHh
Confidence            999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.09  E-value=0.0014  Score=55.30  Aligned_cols=41  Identities=15%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..++.++|.+++.++++++++.++.+.+.+.+...+||+++
T Consensus        88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~  128 (143)
T cd04634          88 KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED  128 (143)
T ss_pred             cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            45788999999999999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.07  E-value=0.0026  Score=50.95  Aligned_cols=50  Identities=12%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++++++++.++.+.+.+.+.+.+||+|++                                          .++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------------------------~~~~~G   39 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------------------------------------ESDAYG   39 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------------------------------------CCcEEE
Confidence            56789999999999999998899999999863                                          268999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +++.+|+++.+.
T Consensus        40 ~v~~~dl~~~~~   51 (114)
T cd04630          40 IVTMRDILKKVV   51 (114)
T ss_pred             EEehHHHHHHHH
Confidence            999999998664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.06  E-value=0.0023  Score=52.14  Aligned_cols=51  Identities=16%  Similarity=0.373  Sum_probs=44.1

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++++++++.++.+.+.+.++..+||+|++                                          .++++|
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~------------------------------------------~~~~~G   39 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE------------------------------------------SGEVIG   39 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCC------------------------------------------CCcEEE
Confidence            56788999999999999998889999999864                                          268999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|+..|+++++..
T Consensus        40 iv~~~dl~~~~~~   52 (123)
T cd04627          40 ILSQRRLVEFLWE   52 (123)
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0019  Score=51.51  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+++...+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------------------------------------GNLVG   38 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------------------------------------CeEEE
Confidence            56788999999999999988888899999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.|+++++..
T Consensus        39 ~v~~~~l~~~~~~   51 (114)
T cd04629          39 FLSEQDCLKQLLE   51 (114)
T ss_pred             EeehHHHHHHhhh
Confidence            9999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0018  Score=54.38  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=44.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.++..+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-------------------------------------------~~~~G   38 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-------------------------------------------GKPVG   38 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CCEEE
Confidence            45678999999999999999899999999875                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.|++..+.
T Consensus        39 iv~~~dl~~~~~   50 (135)
T cd04621          39 VITYRDLAFAEF   50 (135)
T ss_pred             EEeHHHHHHHhh
Confidence            999999998774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.03  E-value=0.0027  Score=50.05  Aligned_cols=50  Identities=18%  Similarity=0.364  Sum_probs=43.7

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++..++++.+++++.+.+.+.++..+||+|++                                           ++++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~   38 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------------------------------------NKLL   38 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------------------------------------CcEE
Confidence            356778999999999999998899999999875                                           7899


Q ss_pred             EEEeHHHHHHHHH
Q psy15906        283 GLILRSQLIILIK  295 (352)
Q Consensus       283 GiItRsdLi~~L~  295 (352)
                      |+|++.|+.....
T Consensus        39 G~v~~~dl~~~~~   51 (109)
T cd04583          39 GIVSLESLEQAYK   51 (109)
T ss_pred             EEEEHHHHHHHhh
Confidence            9999999987653

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.01  E-value=0.0021  Score=51.05  Aligned_cols=48  Identities=25%  Similarity=0.392  Sum_probs=42.6

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      .++.+++++++++++.+.+.+.+++.+||+|++                                           |+++
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   38 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------------------------------------NKVV   38 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------------------------------------CeEE
Confidence            357789999999999999999889999999865                                           7899


Q ss_pred             EEEeHHHHHHH
Q psy15906        283 GLILRSQLIIL  293 (352)
Q Consensus       283 GiItRsdLi~~  293 (352)
                      |+|++.|+...
T Consensus        39 G~v~~~~l~~~   49 (108)
T cd04596          39 GIVTSKDVAGK   49 (108)
T ss_pred             EEecHHHHhcc
Confidence            99999999764

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0032  Score=50.10  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906        205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL  284 (352)
Q Consensus       205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi  284 (352)
                      +.++.+++++.++.+.+.+.+.+.+||+|++                                           ++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~G~   39 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------------------------------------KRLVGI   39 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------------------------------------CCEEEE
Confidence            5678899999999999999999999999875                                           789999


Q ss_pred             EeHHHHHHHH
Q psy15906        285 ILRSQLIILI  294 (352)
Q Consensus       285 ItRsdLi~~L  294 (352)
                      +++.|+.+.+
T Consensus        40 v~~~dl~~~~   49 (113)
T cd04615          40 ITRYDVLSYA   49 (113)
T ss_pred             EEHHHHHHhh
Confidence            9999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.96  E-value=0.0027  Score=50.72  Aligned_cols=53  Identities=47%  Similarity=0.693  Sum_probs=44.6

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ....++++++++++.+.+.+.+++++||+|+..                                        .+++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------------------------------------~~~~~~G   42 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE----------------------------------------ESPRLVG   42 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCC----------------------------------------CCCEEEE
Confidence            467889999999999999999899999998730                                        0278999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|+++|+.....+
T Consensus        43 ~v~~~dl~~~~~~   55 (105)
T cd04591          43 YILRSQLVVALKN   55 (105)
T ss_pred             EEeHHHHHHHHHH
Confidence            9999999987754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.96  E-value=0.0037  Score=49.55  Aligned_cols=51  Identities=18%  Similarity=0.484  Sum_probs=44.8

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.|.+.+...+||+|++                                          +++++|
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------------------------------------~~~~~G   39 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------------------------------------LDNIIG   39 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------------------------------------CceEEE
Confidence            57889999999999999998888999999864                                          278999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +++..||++.+.+
T Consensus        40 ~v~~~~l~~~~~~   52 (111)
T cd04590          40 VVHVKDLLRALAE   52 (111)
T ss_pred             EEEHHHHHHHHHc
Confidence            9999999988754

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.95  E-value=0.0037  Score=50.59  Aligned_cols=48  Identities=15%  Similarity=0.297  Sum_probs=42.9

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++++||+|+                                            |+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G   37 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------------------------------------NELVG   37 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------------------------------------CeEEE
Confidence            5678999999999999999989999999984                                            58999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      ++++.|+.+.+.
T Consensus        38 ~v~~~~l~~~~~   49 (122)
T cd04637          38 VISDRDYLKAIS   49 (122)
T ss_pred             EEEHHHHHHHHH
Confidence            999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.94  E-value=0.0041  Score=49.64  Aligned_cols=56  Identities=21%  Similarity=0.444  Sum_probs=49.6

Q ss_pred             ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCC
Q psy15906        198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDS  277 (352)
Q Consensus       198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~  277 (352)
                      .++|.+++.++.++.++.++...|.+.+...+||++.                                           
T Consensus         2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-------------------------------------------   38 (117)
T COG0517           2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-------------------------------------------   38 (117)
T ss_pred             cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-------------------------------------------
Confidence            3556688999999999999999999999999999985                                           


Q ss_pred             CCeEEEEEeHHHHHHHHHhh
Q psy15906        278 PGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       278 ~g~lvGiItRsdLi~~L~~~  297 (352)
                       .+++|+||.+|+.+++...
T Consensus        39 -~~l~Giit~~di~~~~~~~   57 (117)
T COG0517          39 -GKLVGIITERDILRALAAG   57 (117)
T ss_pred             -CEEEEEEEHHHHHHHHhcc
Confidence             3799999999999999654

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=96.92  E-value=0.0032  Score=50.43  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++++++++.++.+.+.+++++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-------------------------------------------NKVLG   38 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence            46788999999999999998889999999875                                           78999


Q ss_pred             EEeHHHHHHH
Q psy15906        284 LILRSQLIIL  293 (352)
Q Consensus       284 iItRsdLi~~  293 (352)
                      +|+..|+.+.
T Consensus        39 ~v~~~dl~~~   48 (111)
T cd04603          39 QVTLSDLLEI   48 (111)
T ss_pred             EEEHHHHHhh
Confidence            9999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.90  E-value=0.0031  Score=53.18  Aligned_cols=51  Identities=24%  Similarity=0.465  Sum_probs=44.6

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      ++++++++++++.++.+.+.+++++++||+|+                                            ++++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------------------------------------~~~~   36 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------------------------------------GKLV   36 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------------------------------------CeEE
Confidence            35678999999999999999999999999984                                            5799


Q ss_pred             EEEeHHHHHHHHHhh
Q psy15906        283 GLILRSQLIILIKHK  297 (352)
Q Consensus       283 GiItRsdLi~~L~~~  297 (352)
                      |++++.|+...+...
T Consensus        37 G~v~~~dl~~~~~~~   51 (143)
T cd04634          37 GIVSESDILKLLVTH   51 (143)
T ss_pred             EEecHHHHHHHHHhc
Confidence            999999999887543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.80  E-value=0.0041  Score=51.02  Aligned_cols=46  Identities=13%  Similarity=0.269  Sum_probs=41.2

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++..+++++++.+.|.+.+.+.+||+|++                                           |+++|
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-------------------------------------------DNFIG   38 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-------------------------------------------CcEEE
Confidence            46788999999999999988888999999875                                           78999


Q ss_pred             EEeHHHHHH
Q psy15906        284 LILRSQLII  292 (352)
Q Consensus       284 iItRsdLi~  292 (352)
                      +|++.|+..
T Consensus        39 iv~~~dl~~   47 (126)
T cd04640          39 VITAVDLLG   47 (126)
T ss_pred             EEEHHHHhh
Confidence            999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.78  E-value=0.006  Score=48.34  Aligned_cols=50  Identities=32%  Similarity=0.596  Sum_probs=43.7

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++.+++++++.+.+.+.+++.+||+|+                                            ++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~   37 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------------------------------------GRVV   37 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------------------------------------CEEE
Confidence            46788999999999999999888999999985                                            4799


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|+++|+.+.+..
T Consensus        38 G~v~~~dl~~~~~~   51 (110)
T cd04595          38 GIISRRDVEKALRH   51 (110)
T ss_pred             EEEEHHHHHHHHhc
Confidence            99999999887643

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.77  E-value=0.0065  Score=48.07  Aligned_cols=50  Identities=30%  Similarity=0.535  Sum_probs=43.5

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++..++++++++++.+.+.+.+++.+||+|+                                            ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~   36 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------------------------------------GKLV   36 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEE
Confidence            35678899999999999999989999999974                                            5799


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+|++.|++++..+
T Consensus        37 G~v~~~~l~~~~~~   50 (110)
T cd04588          37 GIVTLSDIAHAIAR   50 (110)
T ss_pred             EEEEHHHHHHHHhc
Confidence            99999999987654

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.76  E-value=0.0045  Score=49.82  Aligned_cols=49  Identities=27%  Similarity=0.522  Sum_probs=43.3

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------------------------------------GRLVG   38 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------------------------------------CcEEE
Confidence            46788999999999999999899999999975                                           78999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.++.....
T Consensus        39 ~v~~~~l~~~~~   50 (121)
T cd04584          39 IVTDRDLRDASP   50 (121)
T ss_pred             EEEHHHHHHHhh
Confidence            999999987653

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.73  E-value=0.0057  Score=48.31  Aligned_cols=50  Identities=26%  Similarity=0.476  Sum_probs=43.5

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.|.+.+.+.+||+|+                                            ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~   36 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------------------------------------GRLV   36 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------------------------------------CeEE
Confidence            35678899999999999999888999999985                                            4799


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |++++.|+.+....
T Consensus        37 G~v~~~dl~~~~~~   50 (111)
T cd04612          37 GIVTLADIRRVPAE   50 (111)
T ss_pred             EEEEHHHHHHHHhc
Confidence            99999999987654

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=96.73  E-value=0.0043  Score=49.29  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=43.7

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   39 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------------------------------------GRLVG   39 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------------------------------------CCEEE
Confidence            45678899999999999988888999999875                                           78999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +|++.++.+.+.+
T Consensus        40 ~v~~~~i~~~~~~   52 (114)
T cd04604          40 IFTDGDLRRALEK   52 (114)
T ss_pred             EechHHHHHHHhc
Confidence            9999999988764

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.70  E-value=0.0047  Score=62.45  Aligned_cols=64  Identities=17%  Similarity=0.371  Sum_probs=57.0

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +.+.+|+++|++  ++.+++.+.+++++.+.+.+++|+.+||.+++                                  
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------------------------------  248 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------------------------------  248 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------------------------------
Confidence            678899999985  78899999999999999999999999999943                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                              ...++|+|.-.||+..+.+.
T Consensus       249 --------~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         249 --------LDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             --------CCcEEEEEEHHHHHHHHhcC
Confidence                    25799999999999988765

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.69  E-value=0.003  Score=59.22  Aligned_cols=42  Identities=10%  Similarity=0.038  Sum_probs=39.0

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..+++++|.+++.++++++++.++.+.+.+.+.+.+||+|++
T Consensus       219 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  260 (268)
T TIGR00393       219 KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDH  260 (268)
T ss_pred             cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCC
Confidence            457999999999999999999999999999999999999875

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.65  E-value=0.0083  Score=47.33  Aligned_cols=49  Identities=14%  Similarity=0.356  Sum_probs=42.9

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.++..+||+|+                                            ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G   37 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------------------------------------GRPLG   37 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence            4678899999999999999888999999974                                            58999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      +++++||.+....
T Consensus        38 ~v~~~~l~~~~~~   50 (111)
T cd04611          38 IVTERDILRLLAS   50 (111)
T ss_pred             EEeHHHHHHHHhc
Confidence            9999999987753

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.60  E-value=0.0082  Score=47.18  Aligned_cols=49  Identities=31%  Similarity=0.487  Sum_probs=42.9

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+|+                                            ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G   37 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------------------------------------GRVVG   37 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------------------------------------CeeEE
Confidence            4677899999999999999999999999984                                            47999


Q ss_pred             EEeHHHHHHHHHh
Q psy15906        284 LILRSQLIILIKH  296 (352)
Q Consensus       284 iItRsdLi~~L~~  296 (352)
                      ++++.|+.+.+..
T Consensus        38 ~v~~~dl~~~~~~   50 (110)
T cd04609          38 SIDESDLLDALIE   50 (110)
T ss_pred             EEeHHHHHHHHhc
Confidence            9999999997643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.59  E-value=0.0078  Score=47.76  Aligned_cols=32  Identities=13%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      +++.+++++++++++.+.+.+++++.+||+|+
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~   32 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN   32 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC
Confidence            35678999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.58  E-value=0.0049  Score=63.48  Aligned_cols=40  Identities=13%  Similarity=0.067  Sum_probs=36.7

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+++.|.+++++++++++++++.+++.+.+++++||+|++
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~  136 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDG  136 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC
Confidence            4678888999999999999999999999999999999874

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.57  E-value=0.0078  Score=48.18  Aligned_cols=48  Identities=25%  Similarity=0.452  Sum_probs=42.5

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++.+++++.++.+.+.+.+++.+||+|+                                            ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G   37 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------------------------------------GKLVG   37 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------------------------------------CeEEE
Confidence            5678899999999999999989999999984                                            57999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +|++.|+...+.
T Consensus        38 ~i~~~~l~~~~~   49 (122)
T cd04585          38 IVTDRDLKLASP   49 (122)
T ss_pred             EEeHHHHHHhhh
Confidence            999999998764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>KOG2550|consensus

Probab=96.57  E-value=0.0026  Score=62.74  Aligned_cols=60  Identities=20%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ....+.|+|+++.++.+...+++++-++|++++...+||||++                                     
T Consensus       169 ~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-------------------------------------  211 (503)
T KOG2550|consen  169 NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK-------------------------------------  211 (503)
T ss_pred             ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC-------------------------------------
Confidence            4667899999988999999999999999999999999999987                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                            |.+|-+|+|+||.++-.
T Consensus       212 ------gelva~~~rtDl~k~~~  228 (503)
T KOG2550|consen  212 ------GELVAMLSRTDLMKNRD  228 (503)
T ss_pred             ------CceeeeeehhhhhhhcC
Confidence                  78999999999987753

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.57  E-value=0.0064  Score=47.93  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=29.2

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      +++.++..++++.++.+.+.+.++..+||+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~   34 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD   34 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC
Confidence            456788999999999999998899999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.56  E-value=0.008  Score=47.02  Aligned_cols=46  Identities=28%  Similarity=0.609  Sum_probs=40.5

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+++.+||+| +                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-------------------------------------------~~~~G   37 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-------------------------------------------GKLVG   37 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-------------------------------------------CEEEE
Confidence            567789999999999999988889999997 3                                           68999


Q ss_pred             EEeHHHHHHH
Q psy15906        284 LILRSQLIIL  293 (352)
Q Consensus       284 iItRsdLi~~  293 (352)
                      +++++|+..+
T Consensus        38 iv~~~~l~~~   47 (105)
T cd04599          38 IITSRDVRRA   47 (105)
T ss_pred             EEehHHhhcc
Confidence            9999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=96.55  E-value=0.0092  Score=47.58  Aligned_cols=48  Identities=15%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906        205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL  284 (352)
Q Consensus       205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi  284 (352)
                      ..++++++++.++.+.+.+.++..+||+|++                                           ++++|+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G~   40 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------------------------------------GRLLGT   40 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------------------------------------CCEEEE
Confidence            4578899999999999998888999999875                                           789999


Q ss_pred             EeHHHHHHHHH
Q psy15906        285 ILRSQLIILIK  295 (352)
Q Consensus       285 ItRsdLi~~L~  295 (352)
                      ++.+|+.+++.
T Consensus        41 v~~~dl~~~~~   51 (113)
T cd04607          41 VTDGDIRRALL   51 (113)
T ss_pred             EEcHHHHHHHh
Confidence            99999987664

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.53  E-value=0.013  Score=46.54  Aligned_cols=49  Identities=22%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++++++++++.+.+.+.+++.+||+|+                                            ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~   36 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------------------------------------EKPV   36 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------------------------------------CEEE
Confidence            35678899999999999999888999999984                                            3799


Q ss_pred             EEEeHHHHHHHHH
Q psy15906        283 GLILRSQLIILIK  295 (352)
Q Consensus       283 GiItRsdLi~~L~  295 (352)
                      |++++.|++..+.
T Consensus        37 G~v~~~dl~~~~~   49 (112)
T cd04802          37 GIITERDLVKKVV   49 (112)
T ss_pred             EEEEHHHHHHHHh
Confidence            9999999998664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.52  E-value=0.0058  Score=61.26  Aligned_cols=58  Identities=12%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      .+++++.+.+.++++++++++++..+.++.+. +||||++                                        
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----------------------------------------  376 (400)
T PRK10070        338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED----------------------------------------  376 (400)
T ss_pred             chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC----------------------------------------
Confidence            45667777788999999999999999886666 9999876                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhh
Q psy15906        276 DSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~~~  297 (352)
                         |+++|+|+|.+++++|..+
T Consensus       377 ---~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        377 ---QQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ---CcEEEEEEHHHHHHHHHhc
Confidence               8999999999999999754

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.50  E-value=0.012  Score=46.54  Aligned_cols=49  Identities=22%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++.+++.+.+++++.+.+.+.+++.+||+|+                                            ++++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------------------------------------~~~~   36 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------------------------------------GRLV   36 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------------------------------------CEEE
Confidence            35678899999999999998888899999974                                            5799


Q ss_pred             EEEeHHHHHHHHH
Q psy15906        283 GLILRSQLIILIK  295 (352)
Q Consensus       283 GiItRsdLi~~L~  295 (352)
                      |+|+++|+...+.
T Consensus        37 G~v~~~~l~~~~~   49 (111)
T cd04800          37 GIVTDRDLRNRVV   49 (111)
T ss_pred             EEEEhHHHHHHHh
Confidence            9999999987554

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.41  E-value=0.012  Score=47.28  Aligned_cols=48  Identities=21%  Similarity=0.493  Sum_probs=42.5

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++.+++++.++.+.+.+.+...+||+|+                                            |+++|
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------------------------------------~~~~G   37 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------------------------------------GKLVG   37 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------------------------------------CEEEE
Confidence            5678899999999999999888999999984                                            58999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      ++++.++.+.+.
T Consensus        38 ~v~~~~l~~~~~   49 (121)
T cd04633          38 IVTEKDIADALR   49 (121)
T ss_pred             EEchHHHHHhhh
Confidence            999999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.34  E-value=0.0089  Score=61.69  Aligned_cols=38  Identities=8%  Similarity=0.146  Sum_probs=33.8

Q ss_pred             ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      +..|.+++++++++++++++.+++.++++.++||+|++
T Consensus       103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~  140 (505)
T PLN02274        103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETG  140 (505)
T ss_pred             cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC
Confidence            33377899999999999999999999999999999874

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.34  E-value=0.013  Score=46.98  Aligned_cols=50  Identities=22%  Similarity=0.480  Sum_probs=41.4

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.++..+||+|+.+                                        .+++++|
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~----------------------------------------~~~~~~G   42 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGK----------------------------------------SGGKLLG   42 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCC----------------------------------------cCCEEEE
Confidence            467788999999999999888889999998630                                        0279999


Q ss_pred             EEeHHHHHHH
Q psy15906        284 LILRSQLIIL  293 (352)
Q Consensus       284 iItRsdLi~~  293 (352)
                      +|+..|+...
T Consensus        43 ~v~~~dl~~~   52 (114)
T cd04602          43 IVTSRDIDFL   52 (114)
T ss_pred             EEEhHHhhhh
Confidence            9999998753

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.31  E-value=0.0098  Score=59.80  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      +++++|+ ++.++++++++.++++.|++++.+-.+|+|+.                                        
T Consensus       256 ~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~----------------------------------------  294 (408)
T TIGR03520       256 DWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY----------------------------------------  294 (408)
T ss_pred             CHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC----------------------------------------
Confidence            3566665 56799999999999999999999999999975                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906        276 DSPGRLVGLILRSQLIILIKHKIY  299 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~~~~~  299 (352)
                         |.++|+||.+|++..+-..+.
T Consensus       295 ---G~~~GiVT~eDileeivgei~  315 (408)
T TIGR03520       295 ---GGTSGLVTLEDIIEEIVGDIS  315 (408)
T ss_pred             ---CCEEEEEEHHHHHHHHhCCCC
Confidence               789999999999999965544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.30  E-value=0.016  Score=45.63  Aligned_cols=47  Identities=30%  Similarity=0.513  Sum_probs=41.1

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.++++++++.++.+.+.+.+++.+||++++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g   38 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------------------------------------GELVG   38 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------------------------------------CcEEE
Confidence            45678899999999999998889999999875                                           68999


Q ss_pred             EEeHHHHHHH
Q psy15906        284 LILRSQLIIL  293 (352)
Q Consensus       284 iItRsdLi~~  293 (352)
                      ++++.+++..
T Consensus        39 ~v~~~~l~~~   48 (106)
T cd04638          39 IITRKDLLRN   48 (106)
T ss_pred             EEEHHHHHhc
Confidence            9999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.18  E-value=0.017  Score=46.28  Aligned_cols=48  Identities=31%  Similarity=0.578  Sum_probs=41.4

Q ss_pred             CeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      ++.+++++++++++.+.+...+ ++.+||+|+                                            |+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------------------------------------~~~~   37 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------------------------------------GRPV   37 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------------------------------------CeeE
Confidence            5667889999999999998876 889999985                                            4799


Q ss_pred             EEEeHHHHHHHHH
Q psy15906        283 GLILRSQLIILIK  295 (352)
Q Consensus       283 GiItRsdLi~~L~  295 (352)
                      |+|++.|+..++.
T Consensus        38 G~v~~~~l~~~~~   50 (119)
T cd04598          38 GLIMREALMELLS   50 (119)
T ss_pred             EEEEHHHHHHHHh
Confidence            9999999987664

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.16  E-value=0.024  Score=44.92  Aligned_cols=47  Identities=15%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++.+++++++++++.+.+.+.+.+.+||+|+                                            ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G   37 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--------------------------------------------NKLVG   37 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--------------------------------------------CEEEE
Confidence            5678899999999999998888899999974                                            57999


Q ss_pred             EEeHHHHHHHH
Q psy15906        284 LILRSQLIILI  294 (352)
Q Consensus       284 iItRsdLi~~L  294 (352)
                      +|+++|++..+
T Consensus        38 ~v~~~dl~~~~   48 (113)
T cd04587          38 IFTSKDIALRV   48 (113)
T ss_pred             EEEhHHHHHHH
Confidence            99999998544

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.14  E-value=0.02  Score=45.71  Aligned_cols=49  Identities=18%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCC-CCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATS-HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~-~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      ++.++++++++.++.+.+.+.+ +..+||+| +                                           ++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-------------------------------------------~~~~   37 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-------------------------------------------GRLL   37 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-------------------------------------------CcEE
Confidence            4667899999999999998777 66677766 3                                           6899


Q ss_pred             EEEeHHHHHHHHHh
Q psy15906        283 GLILRSQLIILIKH  296 (352)
Q Consensus       283 GiItRsdLi~~L~~  296 (352)
                      |+++..|++..+..
T Consensus        38 G~v~~~dl~~~~~~   51 (115)
T cd04620          38 GIFTERDIVRLTAI   51 (115)
T ss_pred             EEEeHHHHHHHHhc
Confidence            99999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.00  E-value=0.012  Score=46.65  Aligned_cols=42  Identities=31%  Similarity=0.499  Sum_probs=35.6

Q ss_pred             ecCCCCHHHHHHHHHhCCC-----CeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        208 LRPLETVGNIIDVLKATSH-----NGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       208 l~~~~tV~e~~~~L~~t~~-----~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +.++++++++.+.+.++++     ..+||+|++                                           ++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~   38 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------------------------------------GRLL   38 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------------------------------------CCEE
Confidence            5678999999999987763     689999865                                           7899


Q ss_pred             EEEeHHHHHH
Q psy15906        283 GLILRSQLII  292 (352)
Q Consensus       283 GiItRsdLi~  292 (352)
                      |+|++++++.
T Consensus        39 G~v~~~~l~~   48 (109)
T cd04606          39 GVVSLRDLLL   48 (109)
T ss_pred             EEEEHHHHhc
Confidence            9999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=95.98  E-value=0.039  Score=43.66  Aligned_cols=48  Identities=10%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++++++++++++++.+.+.+.+++.+||+|+                                            ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~G   37 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------------------------------------DPRLG   37 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------------------------------------CeEEE
Confidence            4678899999999999999888889999874                                            46899


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +++..|+...+.
T Consensus        38 ~v~~~~l~~~~~   49 (111)
T cd04589          38 IVTRTDLLDAVL   49 (111)
T ss_pred             EEEHHHHHHHHH
Confidence            999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.80  E-value=0.045  Score=43.27  Aligned_cols=48  Identities=13%  Similarity=0.348  Sum_probs=39.4

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      .+.++++++++.++.+.+.+.+.+.++|.+ +                                           |+++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-------------------------------------------~~~~G   37 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-------------------------------------------GELVG   37 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-------------------------------------------CEEEE
Confidence            456789999999999999877777776654 3                                           68999


Q ss_pred             EEeHHHHHHHHH
Q psy15906        284 LILRSQLIILIK  295 (352)
Q Consensus       284 iItRsdLi~~L~  295 (352)
                      +++++|+.+.+.
T Consensus        38 ~v~~~dl~~~~~   49 (112)
T cd04625          38 LLTFREVLQAMA   49 (112)
T ss_pred             EEEHHHHHHHHH
Confidence            999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=95.54  E-value=0.053  Score=42.62  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        206 ICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       206 v~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      .+++++++++++.+.+.+.++..+||+|+
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~   32 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY   32 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC
Confidence            46789999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=95.46  E-value=0.058  Score=42.14  Aligned_cols=32  Identities=44%  Similarity=0.798  Sum_probs=28.0

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      +++.+++.+.+++++.+.+.+.++..+||+|+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~   33 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN   33 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            46778899999999999998888889999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=95.28  E-value=0.0092  Score=55.08  Aligned_cols=62  Identities=19%  Similarity=0.481  Sum_probs=53.9

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      ..++|+|+|.+  ..++++.+.++.++++.+.++.|+.|||+.++                                   
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-----------------------------------  109 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-----------------------------------  109 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-----------------------------------
Confidence            46789999985  57899999999999999999999999999876                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        271 DASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                             ...+.||+.-.||++.+..
T Consensus       110 -------kD~v~GIL~AKDLL~~~~~  128 (293)
T COG4535         110 -------KDHVEGILLAKDLLPFMRS  128 (293)
T ss_pred             -------chhhhhhhhHHHHHHHhcC
Confidence                   2468899999999987754

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=94.67  E-value=0.034  Score=54.60  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=40.5

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      +++++|+|+|.+  ++..+..+++.+++++.+.++.|+.+||-.++
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~  242 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD  242 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC
Confidence            678999999985  68899999999999999999999999999776

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=94.55  E-value=0.039  Score=52.58  Aligned_cols=46  Identities=17%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..-+++.+|++++.+++++++..+++-.+.+..++++||+|+++.+
T Consensus       313 ~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~l  358 (382)
T COG3448         313 RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKL  358 (382)
T ss_pred             CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcE
Confidence            4668999999999999999999999999999999999999987443

>KOG0474|consensus

Probab=94.50  E-value=0.0082  Score=62.12  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHH-------h---cCCCCcCChhHHHHHHHHHHHHhhhchh
Q psy15906         64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQS-------I---FPEATWIDPGKYALIGAAAQLGGVVRMT  133 (352)
Q Consensus        64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~-------~---~p~~~~~~~~~~alvG~aa~l~g~~r~p  133 (352)
                      ++.|++-.+.+.+.|...|--.|++-.||++|..+++--..       +   |-+.  -+-.-+.-+|+||-.+++.|||
T Consensus       189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnD--rdrRD~VscGaAAGVaAAF~AP  266 (762)
T KOG0474|consen  189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRND--RDRRDLVSCGAAAGVAAAFRAP  266 (762)
T ss_pred             hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhccc--chhhhhhhcchHHhHHHHhCCC
Confidence            37799999999999999999999999999999998764321       1   2222  3556799999999999999999


Q ss_pred             HHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHh
Q psy15906        134 ISLTIILIEATGN---ISFGLPLMLTLITAKWIGD  165 (352)
Q Consensus       134 ls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~  165 (352)
                      +..+++.+|=--+   ..++.=+.++++++.++-+
T Consensus       267 vGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~  301 (762)
T KOG0474|consen  267 VGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR  301 (762)
T ss_pred             ccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence            9999999986443   3466667777777766655

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.03  E-value=0.12  Score=51.50  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      ++.+ +.+++.++++++++.++.....++.+ .+||+|+                                         
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----------------------------------------  363 (382)
T TIGR03415       327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-----------------------------------------  363 (382)
T ss_pred             chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----------------------------------------
Confidence            3445 55678889999999999998877664 4888873                                         


Q ss_pred             CCCCeEEEEEeHHHHHHHHHh
Q psy15906        276 DSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~~  296 (352)
                         |+++|+|+|.+++.+|.+
T Consensus       364 ---~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       364 ---GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             ---CeEEEEEeHHHHHHHHhc
Confidence               689999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=93.58  E-value=0.099  Score=50.61  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..+|+|+|++++.++++++++.++.+.|.+++.+.+||+|++
T Consensus       268 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~  309 (326)
T PRK10892        268 QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADGD  309 (326)
T ss_pred             cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCC
Confidence            467999999999999999999999999999999999999865

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=93.57  E-value=0.085  Score=44.31  Aligned_cols=36  Identities=11%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .|.++++++++++++.++.+.|.+++.+.+||+|++
T Consensus        83 ~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          83 GQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             ccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            345788999999999999999999999999999876

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG1764|consensus

Probab=92.72  E-value=0.18  Score=50.35  Aligned_cols=53  Identities=21%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++..+..++++.++++.|.+.+.+++||||..                                           |+.+|
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-------------------------------------------g~~v~  274 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDEN-------------------------------------------GKKVG  274 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-------------------------------------------Cceec
Confidence            68889999999999999999999999999986                                           56699


Q ss_pred             EEeHHHHHHHHHhhhc
Q psy15906        284 LILRSQLIILIKHKIY  299 (352)
Q Consensus       284 iItRsdLi~~L~~~~~  299 (352)
                      .+++.|+..+.....+
T Consensus       275 ~~s~~Dv~~l~~~~~~  290 (381)
T KOG1764|consen  275 NYSRFDVIHLAREGTY  290 (381)
T ss_pred             ceehhhhhhhhhcCcc
Confidence            9999999999876655

>KOG1764|consensus

Probab=92.11  E-value=0.38  Score=48.04  Aligned_cols=51  Identities=31%  Similarity=0.443  Sum_probs=47.0

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      .++++++.+++.++.+.+..++.|.+.|||++                                           |+++|
T Consensus       311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~-------------------------------------------~~l~G  347 (381)
T KOG1764|consen  311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDED-------------------------------------------GVLVG  347 (381)
T ss_pred             ccEEEeecchHHHHHHHHHhcCceEEEEEcCC-------------------------------------------CcEEE
Confidence            47889999999999999999999999999986                                           78999


Q ss_pred             EEeHHHHHHHHHhh
Q psy15906        284 LILRSQLIILIKHK  297 (352)
Q Consensus       284 iItRsdLi~~L~~~  297 (352)
                      +||=+|++..+...
T Consensus       348 vvSLsDil~~l~~~  361 (381)
T KOG1764|consen  348 VISLSDILSYLVLT  361 (381)
T ss_pred             EeeHHHHHHHHHhC
Confidence            99999999999754

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=91.92  E-value=0.19  Score=51.14  Aligned_cols=45  Identities=11%  Similarity=0.154  Sum_probs=40.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      +.+++++|++++.+++++++++++.+.++++++..+||||+++.+
T Consensus       194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l  238 (449)
T TIGR00400       194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL  238 (449)
T ss_pred             CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence            347999999999999999999999999999999999999976443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=91.66  E-value=0.19  Score=47.13  Aligned_cols=43  Identities=12%  Similarity=0.134  Sum_probs=40.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+.+|+|+|+++++++..++.+.|+.++|..++...+-|+|++
T Consensus       232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~  274 (294)
T COG2524         232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN  274 (294)
T ss_pred             ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccC
Confidence            4679999999999999999999999999999999999999965

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=91.55  E-value=0.25  Score=47.56  Aligned_cols=42  Identities=12%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ..+++++|++++.++.+++++.++.+.|.+++.+.+||||++
T Consensus       262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  303 (321)
T PRK11543        262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN  303 (321)
T ss_pred             CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC
Confidence            346899999999999999999999999999999999999975

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.28  E-value=0.26  Score=50.91  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+|+++|++  +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L  206 (502)
T PRK07107        159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL  206 (502)
T ss_pred             CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            35679999996  78999999999999999999999999999975343

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.64  E-value=0.31  Score=50.10  Aligned_cols=44  Identities=23%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+++++|+++++++++++++.+++++|.+++.+.+||||+++.+
T Consensus       148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~l  191 (479)
T PRK07807        148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRL  191 (479)
T ss_pred             CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeE
Confidence            46999999999999999999999999999999999999975343

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=90.64  E-value=0.5  Score=45.97  Aligned_cols=53  Identities=21%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCC
Q psy15906        200 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPG  279 (352)
Q Consensus       200 IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g  279 (352)
                      .+.+++.++.+++++.+++....+. ...+||||++                                           +
T Consensus       332 ~~~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~-------------------------------------------~  367 (386)
T COG4175         332 ALIDDVLTVDADTPLSEILARIRQA-PCPVAVVDED-------------------------------------------G  367 (386)
T ss_pred             cccccccccCccchHHHHHHHHhcC-CCceeEEcCC-------------------------------------------C
Confidence            3445667888888998888877654 4568999876                                           8


Q ss_pred             eEEEEEeHHHHHHHHHh
Q psy15906        280 RLVGLILRSQLIILIKH  296 (352)
Q Consensus       280 ~lvGiItRsdLi~~L~~  296 (352)
                      +++|+|+|.+++.+|.+
T Consensus       368 r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         368 RYVGIISRGELLEALAR  384 (386)
T ss_pred             cEEEEecHHHHHHHHhc
Confidence            99999999999999875

>KOG2550|consensus

Probab=90.50  E-value=0.21  Score=49.60  Aligned_cols=51  Identities=24%  Similarity=0.462  Sum_probs=42.7

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      .+++++.|+.++.++++.-......++||.++...                                        .+||+
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------------------------------------~~KLv  155 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------------------------------------GSKLV  155 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcc----------------------------------------cceeE
Confidence            45678899999999999999999999999876511                                        37899


Q ss_pred             EEEeHHHHHHH
Q psy15906        283 GLILRSQLIIL  293 (352)
Q Consensus       283 GiItRsdLi~~  293 (352)
                      |+||.+|+-..
T Consensus       156 G~vtsrdi~f~  166 (503)
T KOG2550|consen  156 GIITSRDIQFL  166 (503)
T ss_pred             EEEehhhhhhh
Confidence            99999998665

>PRK11573 hypothetical protein; Provisional

Probab=90.22  E-value=0.82  Score=46.11  Aligned_cols=55  Identities=11%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEE
Q psy15906        203 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLV  282 (352)
Q Consensus       203 ~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lv  282 (352)
                      +++..+++..++.++++.|++++.+-.-|||+.                                           |...
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-------------------------------------------G~~~  298 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-------------------------------------------GDIQ  298 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-------------------------------------------CCeE
Confidence            367789999999999999999888888888875                                           7899


Q ss_pred             EEEeHHHHHHHHHhhhcc
Q psy15906        283 GLILRSQLIILIKHKIYK  300 (352)
Q Consensus       283 GiItRsdLi~~L~~~~~~  300 (352)
                      |+||-.|++..+-..+..
T Consensus       299 GiVTleDilEeivGei~d  316 (413)
T PRK11573        299 GLVTVEDILEEIVGDFTT  316 (413)
T ss_pred             EEeeHHHHHHHHhCCCCc
Confidence            999999999999766543

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=90.19  E-value=0.35  Score=49.65  Aligned_cols=44  Identities=16%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+++++|+++++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~L  189 (475)
T TIGR01303       146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTL  189 (475)
T ss_pred             CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence            46999999999999999999999999999999999999865333

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG0475|consensus

Probab=86.99  E-value=0.26  Score=51.39  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHHHHHHHHHHHHhhhchhHHHHHHHHHh
Q psy15906         64 VVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA  143 (352)
Q Consensus        64 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~alvG~aa~l~g~~r~pls~~vi~~El  143 (352)
                      +++|-++.+++.++|.+=|--.|+.-++.+.|.++..+.....-+.  .--.-+-...|||-.+.+.+||+..+++-+|-
T Consensus       181 l~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e--~~~reilsAaaAaGvavaFgAPIGGVlFslEe  258 (696)
T KOG0475|consen  181 LLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNE--AKKREILSAAAAAGVAVAFGAPIGGVLFSLEE  258 (696)
T ss_pred             HhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccch--hHHHHHHHHHhhccchhhcCCccceeeeehhh
Confidence            5779999999999999999999999999999999888776553221  11122344455555667899999999999996


Q ss_pred             hCC---chhhHHHHHHHHHHHHHHhh
Q psy15906        144 TGN---ISFGLPLMLTLITAKWIGDF  166 (352)
Q Consensus       144 Tg~---~~~~lp~m~~~~~a~~v~~~  166 (352)
                      --.   ...+.--.+++++|-.+.+.
T Consensus       259 v~~~fp~ktlw~sff~aLsAv~~L~~  284 (696)
T KOG0475|consen  259 VSYYFPLKTLWRSFFCALSAVTALRS  284 (696)
T ss_pred             hhhcCCccchHHHHHHHHHHHHHHee
Confidence            432   12233335555666555544

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=86.32  E-value=2.2  Score=43.25  Aligned_cols=53  Identities=17%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEE
Q psy15906        204 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVG  283 (352)
Q Consensus       204 ~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvG  283 (352)
                      ++..+++..++.++++.|++.+.+---|+|+.                                           |...|
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-------------------------------------------G~~~G  316 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-------------------------------------------GGVEG  316 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-------------------------------------------CCeEE
Confidence            67889999999999999999887777777765                                           88999


Q ss_pred             EEeHHHHHHHHHhhhc
Q psy15906        284 LILRSQLIILIKHKIY  299 (352)
Q Consensus       284 iItRsdLi~~L~~~~~  299 (352)
                      +||-.|++..+-..+.
T Consensus       317 lVTleDIiEeIvGei~  332 (429)
T COG1253         317 LVTLEDIIEEIVGEIP  332 (429)
T ss_pred             EeEHHHHHHHHhCCCc
Confidence            9999999999977554

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=85.92  E-value=0.3  Score=39.97  Aligned_cols=42  Identities=7%  Similarity=0.009  Sum_probs=34.4

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHh---------CCCCeEEEEeCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKA---------TSHNGFPIVDVE  235 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~---------t~~~~fPVVd~~  235 (352)
                      +.+++++|++++.++.+++++.++.+++..         .+...+||+|++
T Consensus        58 ~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~  108 (124)
T cd04608          58 SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQ  108 (124)
T ss_pred             CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccc
Confidence            568999999999999999999999996533         256777888764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=84.53  E-value=1.3  Score=45.25  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             ccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..+++++|+ ++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus       142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~l  187 (450)
T TIGR01302       142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGEL  187 (450)
T ss_pred             CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence            457899999 589999999999999999999999999999986443

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=80.63  E-value=2.1  Score=44.08  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             ccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++..+
T Consensus       146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~l  191 (486)
T PRK05567        146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRL  191 (486)
T ss_pred             CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence            347899998 789999999999999999999999999999986443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
3org_A	632	Crystal Structure Of A Eukaryotic Clc Transporter L		1e-15
2ht2_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		3e-05
3ejy_A	473	Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTE		3e-05
2htk_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		3e-05
1kpk_A	473	Crystal Structure Of The Clc Chloride Channel From		3e-05
2ht3_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		3e-05
2exy_A	473	Crystal Structure Of The E148q Mutant Of Ecclc, Fab		3e-05
2ez0_A	473	Crystal Structure Of The S107aE148QY445A MUTANT OF		4e-05
2htl_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		4e-05
3det_A	473	Structure Of The E418a, Y445a Doubly Ungated Mutant		4e-05
3ejz_A	473	Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, C		4e-05
2ht4_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		4e-05
1ots_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		4e-05
3nmo_A	465	Crystal Structure Of An Engineered Monomeric Clc-Ec		4e-05
2fec_A	465	Structure Of The E203q Mutant Of The Cl-H+ EXCHANGE		4e-05
1otu_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		4e-05
1ott_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		5e-05
4ftp_A	465	Structure Of The E202y Mutant Of The Cl-H+ ANTIPORT		5e-05
1kpl_A	473	Crystal Structure Of The Clc Chloride Channel From		5e-05
2hlf_A	444	Structure Of The Escherichis Coli Clc Chloride Chan		6e-05
4ene_A	446	Structure Of The N- And C-Terminal Trimmed Clc-Ec1		6e-05
2r9h_A	444	Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Com		6e-05
3nd0_A	466	X-Ray Crystal Structure Of A Slow Cyanobacterial Cl		4e-04

>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 55  FGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP 114
           FG   L +  +  F+L   + G+ +  GVF+P  L GA +GRL+   ++ +F  A  I P
Sbjct: 316 FGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--IVP 373
Query: 115 GKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDI 174
           G YA++GAAA   GV R  +S  +I+ E TG I   +P++++++ A  +G+ F   LY+ 
Sbjct: 374 GSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYET 432
Query: 175 HIQLSGIPLLAWDPPPLSSNITARIVKSHPV 205
            + +  +P +       S  +TAR +  HP+
Sbjct: 433 LVLMKHLPYMPILRRDRSPEMTAREIM-HPI 462

>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445h Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC- Ec1 Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445a Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445l Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab Complexed In Absence Of Bound Ions Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC, In Complex With A Fab Fragment Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445f Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of E.Coli Clc_ec1, Cl-H+ ANTIPORTER Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1 Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445w Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And Fab Complex Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+ Transporter Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMIITGLGATLLAQF 438

>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC- Ec1 From E.Coli Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148q Mutant And Fab Complex Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148a Mutant And Fab Complex Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 Q-YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER CLC-Ec1 From E.Coli Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 381 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S. Typhimurium Length = 473

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P  A G FS+ + +   +T  + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 321 PIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFP 380
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF 167
           +   ++ G +A+ G  A +   VR  ++  ++++E T N    LP+++T + A  +  F 
Sbjct: 381 Q-YHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFL 439

>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel Y445e Mutant And Fab Complex Length = 444

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 305 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 364
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 365 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 422

>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+ ANTIPORTER And Fab Complex Length = 446

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 306 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 365
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 366 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 423

>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex With Fab Length = 444

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 51  PKGAFGVFSLSVFV---VTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFP 107
           P    G FS+ + V   V   + ++  +     GG+F P L  G   G  F +    +FP
Sbjct: 305 PIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFP 364
Query: 108 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 166
           +   ++ G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F
Sbjct: 365 QYH-LEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 422

>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+ ANTIPORTER Length = 466

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 68  FLLSVWTYGVSVSGGVFIPCL----LTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAA 123
           FLL++  YG    GG+F P L    +   A  R F L   S  PE     P   A+ G  
Sbjct: 333 FLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPE-----PAVMAIAGMG 387
Query: 124 AQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGD 165
           A +   VR  ++  ++ IE T N    LPL++T + A  + +
Sbjct: 388 ALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAE 429

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	3e-64
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	3e-19
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	1e-18
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-08

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score =  214 bits (546), Expect = 3e-64
 Identities = 68/313 (21%), Positives = 121/313 (38%), Gaps = 60/313 (19%)

Query: 53  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
             FG   L +  +  F+L   + G+ +  GVF+P  L GA +GRL+   ++ +F  A  I
Sbjct: 314 DHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--I 371

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLY 172
            PG YA++GAAA   GV R  +S  +I+ E TG I   +P++++++ A  +G+ F   LY
Sbjct: 372 VPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLY 430

Query: 173 DIHIQLSGIPLLAWDPPPLSSNITARIV--KSHPVICLRPLETVGNIIDVL-KATSHNGF 229
           +  + +  +P +       S  +TAR +         L P     +I  +L K  +   F
Sbjct: 431 ETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVF 490

Query: 230 PIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQ 289
           P++                                           D+ G L+G I R +
Sbjct: 491 PVI-------------------------------------------DANGYLLGAISRKE 507

Query: 290 LIILIKHKIYKENQNWPDDQ-----------LSSEIFHAEYPRYPSVNDLVVSENDRSFT 338
           ++  ++H +    +     +            + E    E P     +    +      T
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567

Query: 339 VKLNLFMNTSPFS 351
             L +  + SP  
Sbjct: 568 SSLVVPCDVSPIV 580

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465

 Score = 87.5 bits (217), Expect = 3e-19
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 53  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
           G F +  L    V   + ++  +     GG+F P L  G   G  F +    +FP+   +
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH-L 384

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGL 171
           + G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F   + L
Sbjct: 385 EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPL 444

Query: 172 YD 173
           Y 
Sbjct: 445 YS 446

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 53  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
                 +L +     FLL++  YG    GG+F P L   +      +     +FP     
Sbjct: 318 SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQI-P 376

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGL 171
           +P   A+ G  A +   VR  ++  ++ IE T N    LPL++T + A  + +    + +
Sbjct: 377 EPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPI 436

Query: 172 YD 173
           Y 
Sbjct: 437 YT 438

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 53/156 (33%)

Query: 196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDS 255
             R       +  +   TV ++  ++  T+++GFP+V                       
Sbjct: 18  KPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVV---------------------- 55

Query: 256 HKGDTSHKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIF 315
                                   RLVG +LR  LII I++   K++        S   F
Sbjct: 56  -------------------SRESQRLVGFVLRRDLIISIENARKKQDGVVST---SIIYF 93

Query: 316 HAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFS 351
               P  P              T+KL   ++ SPF+
Sbjct: 94  TEHSPPLPPYTPP---------TLKLRNILDLSPFT 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	99.95
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	99.95
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	99.95
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.54
4esy_A	170	CBS domain containing membrane protein; structural	99.24
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.03
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.02
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.96
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.95
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.94
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.93
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.92
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.91
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.88
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.88
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.87
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.86
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	98.86
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.86
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.86
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.86
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.85
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.84
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.82
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	98.81
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.8
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.8
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.78
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	98.77
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.77
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.76
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.76
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.74
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.72
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.71
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.7
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.68
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.65
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.63
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.61
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.57
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.56
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.54
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.53
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.47
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.47
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.46
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.44
3ddj_A	296	CBS domain-containing protein; structural genomics	98.41
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.4
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.39
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.39
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.35
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.34
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.34
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.33
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.33
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.32
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.26
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.24
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.22
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.21
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.18
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.17
3ddj_A	296	CBS domain-containing protein; structural genomics	98.16
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.15
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.14
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.12
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.12
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.09
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.08
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.03
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	97.97
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	97.92
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.84
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	97.84
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.76
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	97.75
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.74
4esy_A	170	CBS domain containing membrane protein; structural	96.57
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	95.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	95.65
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	95.6
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	95.56
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	95.5
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	95.46
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	95.45
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	95.43
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	95.39
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	95.37
4fry_A	157	Putative signal-transduction protein with CBS DOM;	95.36
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	95.36
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	95.3
1vr9_A	213	CBS domain protein/ACT domain protein; structural	95.29
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	95.29
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	95.21
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	95.17
1pvm_A	184	Conserved hypothetical protein TA0289; structural	95.13
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	95.11
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	94.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	94.79
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	94.69
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	94.68
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	94.66
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	94.55
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	94.47
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	94.29
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	94.08
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	94.0
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	93.69
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	93.53
2oux_A	286	Magnesium transporter; 10001B, structural genomics	93.25
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	93.13
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	93.06
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	90.69
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	90.61
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	90.27
3ocm_A	173	Putative membrane protein; structural genomics, PS	89.53
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	88.74
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	87.14
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	87.12
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	85.02
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	84.83
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	84.14
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	83.04

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=100.00  E-value=5e-43  Score=365.21  Aligned_cols=254  Identities=24%  Similarity=0.390  Sum_probs=208.8

Q ss_pred             cHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906         40 PEKSVRTMLHDPK----GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  115 (352)
Q Consensus        40 ~~~~i~~l~~~~~----~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~  115 (352)
                      +++.++.+|++..    +.+.+..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|..  .+|+
T Consensus       297 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~~--~~p~  374 (632)
T 3org_A          297 PRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--IVPG  374 (632)
T ss_dssp             CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCTT--SCHH
T ss_pred             HHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHhCCcc--cchH
Confidence            5789999997632    123444678889999999999999999999999999999999999999999888864  6899


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCCCCCCccc
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNI  195 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i  195 (352)
                      .||++||||++||++|+|++++ |++|+||++++++|+|+++++||++++.+++||||.+++.|++|++++.+....+++
T Consensus       375 ~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~  453 (632)
T 3org_A          375 SYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEM  453 (632)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccccccccccccC
Confidence            9999999999999999998875 899999999999999999999999999999999999999999999876555555889


Q ss_pred             ccccccc--cCeEEecCCCCHHHHHHHHH-hCCCCeEEEEeCCCCc---cccCCcccc--cC------------------
Q psy15906        196 TARIVKS--HPVICLRPLETVGNIIDVLK-ATSHNGFPIVDVEPMT---KHSSDGAEQ--SS------------------  249 (352)
Q Consensus       196 ~V~dIM~--~~vv~l~~~~tV~e~~~~L~-~t~~~~fPVVd~~~~~---~~~~d~~~~--~~------------------  249 (352)
                      +|+|+|+  +++++++++++++|+.+.++ +++++++||||+++++   ++.+|....  +.                  
T Consensus       454 ~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~  533 (632)
T 3org_A          454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLD  533 (632)
T ss_dssp             BHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC------------------
T ss_pred             cHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccC
Confidence            9999999  89999999999999999999 8999999999975444   222222110  00                  


Q ss_pred             -------------------------------CCCCCcccCCCCCcccCCCC------------CCCCcCC--CCCeEEEE
Q psy15906        250 -------------------------------AGSTDSHKGDTSHKRDSSHK------------GDASRKD--SPGRLVGL  284 (352)
Q Consensus       250 -------------------------------~~~~~~~~~m~~~~~~~~~~------------~~~~~l~--~~g~lvGi  284 (352)
                                                     .+..++.++|++++.+++..            ++..++|  ++|+++|+
T Consensus       534 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~lvGI  613 (632)
T 3org_A          534 AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGI  613 (632)
T ss_dssp             -------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEEEEE
T ss_pred             HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEECCEEEEE
Confidence                                           00113778999999999855            3344445  58999999


Q ss_pred             EeHHHHHHHHHh
Q psy15906        285 ILRSQLIILIKH  296 (352)
Q Consensus       285 ItRsdLi~~L~~  296 (352)
                      |||+|+++++.+
T Consensus       614 VT~~Dll~~~~~  625 (632)
T 3org_A          614 VEREDVAYGYSN  625 (632)
T ss_dssp             EEGGGTEECCCC
T ss_pred             EehhhHHHHHhh
Confidence            999999877643

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=99.95  E-value=4.7e-28  Score=242.65  Aligned_cols=138  Identities=22%  Similarity=0.401  Sum_probs=129.1

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +|+|++.++.++++   .+++..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.
T Consensus       298 ~G~G~~~i~~~~~~---~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~-~~~~~~  373 (446)
T 4ene_A          298 SGGGFNLIPIATAG---NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY-HLEAGT  373 (446)
T ss_dssp             SSCCSTHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG-TCCHHH
T ss_pred             cCCcHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCcc-ccCHHH
Confidence            37899999999976   46678889999999999999999999999999999999999999999999998864 378999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHH
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQL  178 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~  178 (352)
                      ||++||||+++|++|+|+|++++++|+||++++++|+|+++++||++++.++ +||||.++++
T Consensus       374 ~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r  436 (446)
T 4ene_A          374 FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR  436 (446)
T ss_dssp             HHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999995 9999998865

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=99.95  E-value=4.7e-28  Score=243.85  Aligned_cols=139  Identities=22%  Similarity=0.402  Sum_probs=130.2

Q ss_pred             ccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhH
Q psy15906         37 LQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  116 (352)
Q Consensus        37 ~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~  116 (352)
                      +|+|++.++.++++   .+.+..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.
T Consensus       313 lG~G~~~i~~~~~~---~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~-~~~~~~  388 (465)
T 1ots_A          313 SGGGFNLIPIATAG---NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY-HLEAGT  388 (465)
T ss_dssp             SSCSTTHHHHHHHT---CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG-TCCHHH
T ss_pred             cCChHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCcc-cccHHH
Confidence            47899999999986   45678899999999999999999999999999999999999999999999988864 378999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHHc
Q psy15906        117 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  179 (352)
Q Consensus       117 ~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~~  179 (352)
                      ||++||||+++|++|+|+|+++|++|+||++++++|+|+++++||++++.++ +||||.+++++
T Consensus       389 ~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~  452 (465)
T 1ots_A          389 FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART  452 (465)
T ss_dssp             HHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 89999998765

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=99.95  E-value=6.4e-28  Score=242.66  Aligned_cols=137  Identities=22%  Similarity=0.363  Sum_probs=129.3

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|++.++.++++   .+.+..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.|
T Consensus       306 G~G~~~i~~~~~~---~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~-~~~~~~~  381 (466)
T 3nd0_A          306 DGGDNAVLWAFNS---QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQ-IPEPAVM  381 (466)
T ss_dssp             SSSHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTT-CSSTHHH
T ss_pred             CCcHHHHHHHHcC---CccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCcc-ccCHHHH
Confidence            7899999999986   45678899999999999999999999999999999999999999999999998864 3789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHH
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQL  178 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~  178 (352)
                      |++||||+++|++|+|+|++++++|+||++++++|+|+++++||++++.++ +||||.++++
T Consensus       382 a~vGmaa~~a~v~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r  443 (466)
T 3nd0_A          382 AIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER  443 (466)
T ss_dssp             HHHTTSHHHHHHHSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999999995 9999999876

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.54  E-value=1.5e-14  Score=134.18  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=64.8

Q ss_pred             CCCCCCCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCC
Q psy15906        182 PLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTS  261 (352)
Q Consensus       182 p~l~~~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~  261 (352)
                      |.|.|.+. ...+++|+|+|+++++++.+++++.++.++|.++++++|||||++                          
T Consensus         1 P~L~~~~~-~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~--------------------------   53 (250)
T 2d4z_A            1 PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP--------------------------   53 (250)
T ss_dssp             --CCCCCC-CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT--------------------------
T ss_pred             CCCCCCCc-ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecC--------------------------
Confidence            56777655 667899999999999999999999999999999999999999875                          


Q ss_pred             CcccCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        262 HKRDSSHKGDASRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       262 ~~~~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                                     ++++|+|+|+|+||++++.++.
T Consensus        54 ---------------~~~~LvGiIt~~dl~~~l~~~~   75 (250)
T 2d4z_A           54 ---------------DTNTLLGSIDRTEVEGLLQRRI   75 (250)
T ss_dssp             ---------------TTCBEEEEEEHHHHHHHHHHHH
T ss_pred             ---------------CCCeEEEEEEHHHHHHHHHHhh
Confidence                           1378999999999999987654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.24  E-value=4.7e-12  Score=109.33  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=81.8

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccccc--------------------
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQS--------------------  248 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~--------------------  248 (352)
                      +++++|+|+|+++++++++++++.++.+.|.+++++++||+|+++.+   +|.+|.....                    
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPE   94 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHH
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhh
Confidence            35789999999999999999999999999999999999999987544   3444442110                    


Q ss_pred             ------CCCCCCcccCCCCCcccCCCC------------CCCCcCC--CCCeEEEEEeHHHHHHHHH
Q psy15906        249 ------SAGSTDSHKGDTSHKRDSSHK------------GDASRKD--SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       249 ------~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~--~~g~lvGiItRsdLi~~L~  295 (352)
                            ...+.++.++|++++++++..            ++..++|  ++|+++|+|||+||+++|.
T Consensus        95 ~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           95 VEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSC
T ss_pred             HHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence                  112456888999999999855            4455565  4799999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.03  E-value=3.7e-10  Score=92.74  Aligned_cols=103  Identities=12%  Similarity=0.054  Sum_probs=77.8

Q ss_pred             cccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCcccccCCCCCCcccCCCCCcccC
Q psy15906        193 SNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       193 ~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~  266 (352)
                      ...+|+|+|+  +++++++++++++++.+.|.+++++.+||+|++ +.+   ++.+|........+.++.++|++ +.++
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m~~-~~~v   81 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRP-AVFI   81 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGCBC-CCEE
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHhCC-CeEe
Confidence            4678999999  678999999999999999999999999999874 344   34555533323456788999965 6666


Q ss_pred             CCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        267 SHK------------GDASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       267 ~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      +..            ++...+|   ++|+++|+||++|+++++..
T Consensus        82 ~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           82 PEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            633            3344444   36899999999999998864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.02  E-value=5.3e-10  Score=91.45  Aligned_cols=104  Identities=14%  Similarity=0.107  Sum_probs=80.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCcccc--cCCC-CCCcccCCCCCcccC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGAEQ--SSAG-STDSHKGDTSHKRDS  266 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~~~--~~~~-~~~~~~~m~~~~~~~  266 (352)
                      .+++++++|.+++.+++++++++++.+.|.+++++.+||+|++ .+ +  +.+|....  .+.. +.++.++|++++.++
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v   81 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRSY   81 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCCCB
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECC-EEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCcEE
Confidence            4689999999999999999999999999999999999999984 44 2  33333211  1111 267899999998888


Q ss_pred             CCCCC------------CCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        267 SHKGD------------ASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       267 ~~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +....            ...+|   ++|+++|+||++|+++++.+.
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           82 RPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             CTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence            75432            33333   479999999999999998764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.96  E-value=2.8e-10  Score=95.52  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCccccc-CCCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAEQS-SAGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~~~-~~~~~~~~~~m~~~~~  264 (352)
                      +...+|+|+|++  +++++++++++.++.+.|.+++++.+||+|++ +.+   ++.+|..... ...+.++.++| +++.
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m-~~~~   98 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIELEEIL-RDII   98 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSCCCGGGTC-BCCE
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCCccHHHhc-CCCe
Confidence            567899999998  99999999999999999999999999999885 344   2333332110 11167899999 8888


Q ss_pred             cCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        265 DSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       265 ~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      +++...            +...+|   ++|+++|+||++|+++++..
T Consensus        99 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           99 YISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            887543            234444   36899999999999999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.95  E-value=3.1e-10  Score=91.53  Aligned_cols=102  Identities=18%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      .+|+|+|++++.++++++++.++.+.|.+++++.+||+|+++.+   ++.+|..........++.++|.+++.+++....
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~~~~~   80 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEP   80 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEETTSB
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEECCCCC
Confidence            36899999999999999999999999999999999999966444   233333211123345899999998888875532


Q ss_pred             ------------CCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        272 ------------ASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 ------------~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                                  ...+|   ++|+++|+||++|+++++.+
T Consensus        81 l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           81 VDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                        33444   35899999999999998865

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.94  E-value=6.2e-10  Score=91.01  Aligned_cols=101  Identities=18%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             ccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCcccc--cCCCCCCcccCCCCCccc
Q psy15906        194 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAEQ--SSAGSTDSHKGDTSHKRD  265 (352)
Q Consensus       194 ~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~~--~~~~~~~~~~~m~~~~~~  265 (352)
                      +.+|+|+|+++  +++++++++++++.+.|.+++++.+||+|++ +.+   ++.+|....  ....+.++.++|++ +.+
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~-~~~   80 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRT-AVV   80 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBC-CCE
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCC-CeE
Confidence            56899999954  9999999999999999999999999999975 344   344454321  33456788999965 666


Q ss_pred             CCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        266 SSHK------------GDASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       266 ~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                      ++..            ++...+|   ++|+++|+||++|+++++.
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           81 VPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             EETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             ECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            6643            3344444   4789999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.93  E-value=6.6e-10  Score=96.08  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             Ccccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCccc-ccCCCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAE-QSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~-~~~~~~~~~~~~m~~~~~  264 (352)
                      +...+|+|+|+  ++++++++++++.++++.|.+++++.+||+|++ +.+   ++.+|... .....+.++.++| +++.
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~  117 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCN  117 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCE
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCe
Confidence            56789999999  788999999999999999999999999999874 344   23333321 1122367899999 8888


Q ss_pred             cCCCCCC------------CCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        265 DSSHKGD------------ASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       265 ~~~~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++....            ...+|   ++|+++|+||++|+++++....
T Consensus       118 ~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          118 FVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             EEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred             EeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence            8875533            33444   3689999999999999987644

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.92  E-value=5.9e-10  Score=92.45  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             ccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCcccc---cCCCCCCcccCCCCCcc
Q psy15906        194 NITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAEQ---SSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       194 ~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~~---~~~~~~~~~~~m~~~~~  264 (352)
                      ..+|+|+|+  ++++++++++++.++.+.|.+++++.+||+|++ +.+   ++.+|....   ....+.++.++|++ +.
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~-~~   80 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP-AT   80 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC-CC
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC-Ce
Confidence            568999999  678999999999999999999999999999875 344   344454321   12346688999976 77


Q ss_pred             cCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        265 DSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       265 ~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++...            +...+|   ++|+++|+||++|+++++...+
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~  129 (136)
T 3lfr_A           81 FVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDI  129 (136)
T ss_dssp             EEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC----
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            776442            233344   4689999999999998876543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.91  E-value=2.3e-09  Score=95.96  Aligned_cols=106  Identities=12%  Similarity=0.074  Sum_probs=83.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhC---CCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKAT---SHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  268 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t---~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~  268 (352)
                      ...+|+++|++++++++++++++++++.+++.   +.+.+||+|+++.+ +.++.........+.++.++|++++++++.
T Consensus        52 ~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~~v~~  131 (205)
T 3kxr_A           52 SENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTA  131 (205)
T ss_dssp             CTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCTTSBGGGGCCSSCCCEET
T ss_pred             CcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCCcchHHHHhcCCCeEECC
Confidence            45689999999999999999999999999986   67899999976444 323322234455678899999999988874


Q ss_pred             C------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        269 K------------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       269 ~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      .            ++...+|   ++|+++|+||++|++..+....
T Consensus       132 ~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          132 NTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             TSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence            4            3344444   4789999999999999997654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.88  E-value=1.5e-09  Score=89.40  Aligned_cols=106  Identities=18%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCc-cc-c--cCCCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDG-AE-Q--SSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~-~~-~--~~~~~~~~~~~m~~~~~  264 (352)
                      +.+.+|+++|++++.++++++++.++.+.|.+++++.+||+|+++.+   ++.+|. .. .  ....+.++.++|++++.
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   84 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVI   84 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSCC
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCcE
Confidence            56789999999999999999999999999999999999999975444   233443 21 1  12346688899998887


Q ss_pred             cCCCC------------CC-----CCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        265 DSSHK------------GD-----ASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       265 ~~~~~------------~~-----~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++..            .+     ...+|   ++|+++|+||++|+++.+.++
T Consensus        85 ~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           85 TIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             CEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            77632            34     44554   378999999999999988654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.88  E-value=1.3e-09  Score=90.77  Aligned_cols=105  Identities=20%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccc-----------------cCC
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQ-----------------SSA  250 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~-----------------~~~  250 (352)
                      +.++|+|+|++  +++++++++++.++.+.|.+++++.+||+|+++.+   ++.+|....                 ...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~   82 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKT   82 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC----
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHh
Confidence            46899999998  89999999999999999999999999999986444   233333211                 123


Q ss_pred             CCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        251 GSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       251 ~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      .+.++.++|.+++.+++..            .+...+|   ++|+++|+||++|+++.+.+.
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            3568899999988888744            2344444   478999999999999998753

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.87  E-value=1.2e-09  Score=93.45  Aligned_cols=111  Identities=13%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             CCCCCCccccccccccc---CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--cc---CCCCCCc
Q psy15906        187 DPPPLSSNITARIVKSH---PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QS---SAGSTDS  255 (352)
Q Consensus       187 ~~~~~l~~i~V~dIM~~---~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~---~~~~~~~  255 (352)
                      +....+..++|+|+|++   +++++++++++.++.+.|.+++++.+||+|+++.+   ++.+|...  ..   ...+.++
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v   95 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSV   95 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBG
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCH
Confidence            34456788999999995   79999999999999999999999999999976444   23333311  11   2346789


Q ss_pred             ccCCCCCcccCCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHhh
Q psy15906        256 HKGDTSHKRDSSHKGD------------ASRKD--SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       256 ~~~m~~~~~~~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~~  297 (352)
                      .++|++++.+++....            ...+|  ++|+++|+||++||++++.+.
T Consensus        96 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           96 SVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             GGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTCC
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            9999999998885533            34444  249999999999999988653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.87  E-value=1.8e-09  Score=91.44  Aligned_cols=106  Identities=6%  Similarity=-0.057  Sum_probs=82.2

Q ss_pred             CCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCe-EEEEeCCCCc---cccCCcccc------------------
Q psy15906        190 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNG-FPIVDVEPMT---KHSSDGAEQ------------------  247 (352)
Q Consensus       190 ~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~-fPVVd~~~~~---~~~~d~~~~------------------  247 (352)
                      ......+|+|+|++++.++++++++.++.+.|.+++.+. +||+|++ .+   ++..|....                  
T Consensus        11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~   89 (157)
T 1o50_A           11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSS   89 (157)
T ss_dssp             TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------C
T ss_pred             hhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHH
Confidence            345688999999999999999999999999999999999 9999987 44   233333211                  


Q ss_pred             -cCCCCCCcccCCCCCcccCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        248 -SSAGSTDSHKGDTSHKRDSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       248 -~~~~~~~~~~~m~~~~~~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                       ....+.++.++|++ +.+++...            +...+|   ++|+++|+||++||++.+.+.
T Consensus        90 ~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A           90 MKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             CCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             HHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence             12346688899999 88887553            234444   378999999999999998754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.86  E-value=1.5e-09  Score=88.90  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=79.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--cc-CCCCCCcccCCCCCcccC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QS-SAGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~-~~~~~~~~~~m~~~~~~~  266 (352)
                      +..+|+++|.+++.++++++++.++.+.|.+++++.+||+|++ .+   ++.+|...  .. ...+.++.++|++++.++
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~~v   80 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIVKAIGKGKSLETKAEEFMTASLITI   80 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCCCE
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECC-EEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCEEE
Confidence            4679999999999999999999999999999999999999943 33   23333321  11 134578999999888888


Q ss_pred             CCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        267 SHKG------------DASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       267 ~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +...            +...+|   ++|+++|+||++|+++.+.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           81 REDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            7543            233343   378999999999999998764

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=98.86  E-value=1.1e-08  Score=102.72  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=97.3

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|-..++..+++..+...+    -.+..|++.+.+|.|+|.+.|-..|+..+||++|..+++.++.   .. ..+...+
T Consensus       106 GsGip~v~~~l~~~~~~~~~----r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l---~~-~~~~r~l  177 (465)
T 1ots_A          106 GSGIPEIEGALEDQRPVRWW----RVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL---KG-DEARHTL  177 (465)
T ss_dssp             SCSHHHHHHHHTTCSCCCHH----HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC---CS-HHHHHHH
T ss_pred             CCChHHHHHHHhCCCCCCcH----HHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhcc---CC-HHHHHHH
Confidence            45667777777764332222    2347899999999999999999999999999999999986531   01 1245679


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhh-CCch--h--hHHHHHHHHHHHHHHhhc
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEAT-GNIS--F--GLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElT-g~~~--~--~lp~m~~~~~a~~v~~~~  167 (352)
                      ..+||||-+|++.++|++.+++.+|.. ++++  .  ++|.++++++|.++++.+
T Consensus       178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~  232 (465)
T 1ots_A          178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF  232 (465)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999875 4443  4  889999999999999974

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.86  E-value=1.1e-09  Score=94.08  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccc---------------------
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQ---------------------  247 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~---------------------  247 (352)
                      .++|+|+|++  +++++++++++.++.+.|.+++++++||+|+++.+   ++.+|....                     
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4689999998  89999999999999999999999999999976444   233333210                     


Q ss_pred             ----------cCCCCCCcccCCCCCcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        248 ----------SSAGSTDSHKGDTSHKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       248 ----------~~~~~~~~~~~m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                                ....+.++.++|++++.+++..            .+...+|   ++|+++|+||++||++++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence                      1234568889999988888744            3344444   4799999999999999987643

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.86  E-value=1.7e-09  Score=92.54  Aligned_cols=103  Identities=15%  Similarity=0.074  Sum_probs=77.8

Q ss_pred             cccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--------ccCCCCCCcccCCCCC
Q psy15906        196 TARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--------QSSAGSTDSHKGDTSH  262 (352)
Q Consensus       196 ~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--------~~~~~~~~~~~~m~~~  262 (352)
                      +++++|++  ++.++.++++++++.++|.+++++++||+|+++.+   ++.+|...        .....+.++.++|+++
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~~   95 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTD   95 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBCS
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcCC
Confidence            68899984  78999999999999999999999999999876444   23333311        0112367899999999


Q ss_pred             cccCCCCCC----------CCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        263 KRDSSHKGD----------ASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       263 ~~~~~~~~~----------~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++++....          ...+|   ++|+++|+|||+|+++++.+..
T Consensus        96 ~~~v~~~~~l~~~~~~m~~~~~lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A           96 VAVVSPDFTITEVLHKLVDESFLPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             CCCBCTTCCHHHHHHHTTTSSEEEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             ceecccccHHHHHHHHHHHcCCeEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence            999985533          11233   5799999999999999997643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.86  E-value=7.7e-10  Score=90.80  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc-c--ccCCccc--ccCCCCCCcccCCCCCc
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT-K--HSSDGAE--QSSAGSTDSHKGDTSHK  263 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~-~--~~~d~~~--~~~~~~~~~~~~m~~~~  263 (352)
                      +...+|+|+|++  ++++++++++++++.+.|.+++++.+||+|++ +.+ +  +.+|...  ..+..+.++.++|+ ++
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~-~~   81 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMR-PI   81 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSE-EC
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhc-CC
Confidence            467899999994  56789999999999999999999999999875 344 2  3333321  12234678889994 56


Q ss_pred             ccCCCCCC------------CCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        264 RDSSHKGD------------ASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       264 ~~~~~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                      .+++....            ...+|   ++|+++|+||++|+++++.
T Consensus        82 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           82 QVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             CEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             cCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            77764432            33344   4689999999999999874

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.85  E-value=1.6e-09  Score=92.40  Aligned_cols=106  Identities=16%  Similarity=0.096  Sum_probs=80.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccc------------cCCCCCCccc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQ------------SSAGSTDSHK  257 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~------------~~~~~~~~~~  257 (352)
                      ..++|+|+|+++++++++++++.++.+.|.+++.+.+||+|+++.+   ++.+|....            ....+.++.+
T Consensus         3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   82 (160)
T 2o16_A            3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   82 (160)
T ss_dssp             CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH
Confidence            4678999999999999999999999999999999999999975444   233333211            1234678899


Q ss_pred             CCCCCcccCCCC------------CCCCcCC--CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        258 GDTSHKRDSSHK------------GDASRKD--SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       258 ~m~~~~~~~~~~------------~~~~~l~--~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +|++++.+++..            .+...+|  ++|+++|+||++||++++.+..
T Consensus        83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence            999998888854            2344444  3599999999999999987644

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.84  E-value=2.6e-09  Score=108.76  Aligned_cols=127  Identities=11%  Similarity=0.001  Sum_probs=95.8

Q ss_pred             hHHHHHHcCCCCCCCCCCCCCcccccccccccCeEEecCC-CCHHHHHHHHHhCCCCeEEEEe-CCCCc---cccCCccc
Q psy15906        172 YDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPL-ETVGNIIDVLKATSHNGFPIVD-VEPMT---KHSSDGAE  246 (352)
Q Consensus       172 y~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~~~vv~l~~~-~tV~e~~~~L~~t~~~~fPVVd-~~~~~---~~~~d~~~  246 (352)
                      ++..+..+++..........+...+|+|+|+++++++.++ +++.+++++|.+++++.+||+| +++.+   ++.+|...
T Consensus       361 ~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~  440 (527)
T 3pc3_A          361 SDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLIT  440 (527)
T ss_dssp             SHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHH
T ss_pred             cHHHHHhcCCccccccccccccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHH
Confidence            4667788887665544555678899999999999999999 9999999999999999999999 44344   34444421


Q ss_pred             --c--cCCCCCCcccCCCCCcccCCCCCCCC----------cCC---C----CCeEEEEEeHHHHHHHHHhhh
Q psy15906        247 --Q--SSAGSTDSHKGDTSHKRDSSHKGDAS----------RKD---S----PGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       247 --~--~~~~~~~~~~~m~~~~~~~~~~~~~~----------~l~---~----~g~lvGiItRsdLi~~L~~~~  298 (352)
                        .  ....+.++.++|++++++++......          ..+   +    +|+++|||||+||++.+.++.
T Consensus       441 ~l~~~~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          441 QIVSMNRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             HHHHHCCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             HHHhccCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCEEEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence              1  23457789999999998887443211          112   2    289999999999999998654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.82  E-value=4.7e-09  Score=86.49  Aligned_cols=106  Identities=9%  Similarity=0.123  Sum_probs=80.7

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcc--cc-cC-CCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGA--EQ-SS-AGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~--~~-~~-~~~~~~~~~m~~~~~  264 (352)
                      +...+|+++|++++.++++++++.++.+.|.+++++.+||+|+++.+   ++.+|..  .. .+ ..+.++.++|++++.
T Consensus         4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   83 (138)
T 2yzi_A            4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI   83 (138)
T ss_dssp             CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred             hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCCCe
Confidence            46789999999999999999999999999999999999999965344   2334431  11 11 346789999999888


Q ss_pred             cCCCCCC------------CCcC--CCCCeEEEEEeHHHHHHHHHhh
Q psy15906        265 DSSHKGD------------ASRK--DSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       265 ~~~~~~~------------~~~l--~~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++....            ...+  .++|+++|+||++|+++.+.+.
T Consensus        84 ~v~~~~~l~~~~~~m~~~~~~~lVvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           84 TANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             EECCCCcHHHHHHHHHhcCCCEEEECCCCCEEEEEEHHHHHHHHHHH
Confidence            8874422            2222  2378999999999999998754

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=98.81  E-value=1.7e-08  Score=101.38  Aligned_cols=126  Identities=11%  Similarity=0.085  Sum_probs=98.6

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|-..++..+++......+.    .+..|++.+.+|.|+|.+-|-..|+..+||++|..+++.++.    . ..+....
T Consensus       102 GsGIp~v~~~l~g~~~~~~~~----~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~----~-~~~~r~l  172 (466)
T 3nd0_A          102 GSGIPQIEGHLEGKLPLVWQR----VLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKA----T-QENQRIL  172 (466)
T ss_dssp             BCSHHHHHHHTTSSSCCCHHH----HHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTC----C-HHHHHHH
T ss_pred             CCCHHHHHHHHcCCCCCchHH----HHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCC----C-hhHHHHH
Confidence            456566777777643322222    346799999999999999999999999999999999986531    1 1244688


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhh-CCc----hhhHHHHHHHHHHHHHHhhcC--Cchh
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEAT-GNI----SFGLPLMLTLITAKWIGDFFT--EGLY  172 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElT-g~~----~~~lp~m~~~~~a~~v~~~~~--~~iy  172 (352)
                      ..+|+||-++++.++|++.+++.+|.. +++    ..+.|.++++++|.++++.+.  ++.|
T Consensus       173 l~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~f  234 (466)
T 3nd0_A          173 IAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMIRGQSAII  234 (466)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHHHTCSSCSS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCce
Confidence            999999999999999999999999964 444    236699999999999998752  4444

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.80  E-value=2.3e-09  Score=88.15  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             cccccccc---cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c-c--CCCCCCcccCCCCCc
Q psy15906        195 ITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q-S--SAGSTDSHKGDTSHK  263 (352)
Q Consensus       195 i~V~dIM~---~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~-~--~~~~~~~~~~m~~~~  263 (352)
                      .+|+|+|+   +++.++++++++.++.+.|.+++++.+||+|++ .+   ++.+|...  . .  ...+.++.++|++++
T Consensus         6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (135)
T 2rc3_A            6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   84 (135)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECC-EEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCC
Confidence            38999999   899999999999999999999999999999944 33   23333321  1 1  124678999999999


Q ss_pred             ccCCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHhh
Q psy15906        264 RDSSHKGD------------ASRKD--SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       264 ~~~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~~  297 (352)
                      .+++....            ...+|  ++|+++|+||++|+++++.++
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           85 AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC-
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHhc
Confidence            88885532            33344  378999999999999988653

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.80  E-value=1.5e-08  Score=90.88  Aligned_cols=105  Identities=8%  Similarity=-0.020  Sum_probs=81.4

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCCCC---
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK---  269 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~---  269 (352)
                      ..+++++|.++++++++++++.++.++|.+++++++||+|+++.+ +..++..+.+...+.++.++|++++.+++..   
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~~~~~v~~~~~l   91 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNI   91 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBCTTCCEETTSBH
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccCCCEEECCCCcH
Confidence            457999999999999999999999999999999999999965344 3233333333444678999999999888744   


Q ss_pred             ---------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        270 ---------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       270 ---------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                               .+...+|   ++|+++|+||++|+++.+....
T Consensus        92 ~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           92 THALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             HHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence                     3445555   3589999999999999887543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.79  E-value=1.9e-09  Score=90.25  Aligned_cols=108  Identities=10%  Similarity=0.041  Sum_probs=81.2

Q ss_pred             CCcccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c-------cCCCCCCcc
Q psy15906        191 LSSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q-------SSAGSTDSH  256 (352)
Q Consensus       191 ~l~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~-------~~~~~~~~~  256 (352)
                      .+..++|+|+|+  ++++++++++++.++.+.|.+++++.+||+|+++.+   ++..|...  .       ....+.++.
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~   90 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVE   90 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGG
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHH
Confidence            356889999999  469999999999999999999999999999976444   23233211  0       112457899


Q ss_pred             cCCCCCcccCCCCCCC----------CcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        257 KGDTSHKRDSSHKGDA----------SRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       257 ~~m~~~~~~~~~~~~~----------~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      ++|++++.+++.....          ..+|   ++|+++|+||++|+++.+.+..
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPFICAVNEDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCEEEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence            9999988888744321          1144   4799999999999999997654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.78  E-value=1.2e-09  Score=88.22  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=75.8

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccc--c--CCCCCCcccCCCCCcccCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQ--S--SAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~--~--~~~~~~~~~~m~~~~~~~~  267 (352)
                      ++|+|+|++++.++++++++.++.+.|.+++++.+||+|++ .+   ++.+|....  .  ...+.++.++|++++.+++
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~   79 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTIS   79 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETT-EEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEEC
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCC-eeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEEC
Confidence            47899999999999999999999999999999999999943 33   233333211  1  1246788999999888887


Q ss_pred             CCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHhh
Q psy15906        268 HKGD------------ASRKD--SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       268 ~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~~  297 (352)
                      ....            ...+|  ++|+++|+||++|+++.+.++
T Consensus        80 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           80 PRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHhc
Confidence            5533            33444  249999999999999988654

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=98.77  E-value=5.2e-08  Score=97.30  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             cCcHHHHHHHhcCCCCchh-HHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh-
Q psy15906         38 QVPEKSVRTMLHDPKGAFG-VFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG-  115 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~-~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~-  115 (352)
                      |+|-..++..+++.. .+. +..    +..|++.+.+|.|+|.+-|-..|+..+||++|..+++.++.  +.   .+.. 
T Consensus        91 GsGip~v~~~l~~~~-~~~~~r~----~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~--~~---~~~r~  160 (446)
T 4ene_A           91 GSGIPEIEGALEDQR-PVRWWRV----LPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL--KG---DEARH  160 (446)
T ss_dssp             SCSHHHHHHHHHTCS-CCCHHHH----HHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC--CS---HHHHH
T ss_pred             CCCHHHHHHHHhCCC-ccchHHH----HHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCC--CH---HHHHH
Confidence            455566777676532 233 223    46799999999999999999999999999999998876431  11   2333 


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhC-Cc----hhhHHHHHHHHHHHHHHhhcC
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATG-NI----SFGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg-~~----~~~lp~m~~~~~a~~v~~~~~  168 (352)
                      ....+|+||-++++.++|++.+++.+|... ++    ..+.|.++++++|.++++.+.
T Consensus       161 ~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~  218 (446)
T 4ene_A          161 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN  218 (446)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHc
Confidence            789999999999999999999999999754 33    348899999999999999763

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.77  E-value=5.6e-09  Score=87.96  Aligned_cols=108  Identities=10%  Similarity=0.088  Sum_probs=79.5

Q ss_pred             CCccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccc--c-------CCCCCCcc
Q psy15906        191 LSSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQ--S-------SAGSTDSH  256 (352)
Q Consensus       191 ~l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~--~-------~~~~~~~~  256 (352)
                      .+..++|+++|.+  ++.++++++++.++.+.|.+++++.+||+|+++.+   ++..|....  .       ...+.++.
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVE   86 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHH
Confidence            3567899999997  89999999999999999999999999999975344   233333211  1       12457899


Q ss_pred             cCCCCCcccCCCCCCC----------CcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        257 KGDTSHKRDSSHKGDA----------SRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       257 ~~m~~~~~~~~~~~~~----------~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      ++|.+++.+++.....          ..+|   ++|+++|+||++|+++.+.+..
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPFVCVENDDGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSEEEEECSSSSEEEEEEHHHHHHHHHHTT
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            9999998888744221          1144   3689999999999999987654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.76  E-value=7.7e-09  Score=87.84  Aligned_cols=106  Identities=10%  Similarity=0.070  Sum_probs=79.9

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c--cCCCCCCcccCCCC--C
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q--SSAGSTDSHKGDTS--H  262 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~--~~~~~~~~~~~m~~--~  262 (352)
                      +..++|+|+|+++ +++++++++.++.+.|.+++++.+||+|+++.+   ++.+|...  .  ....+.++.++|++  +
T Consensus        14 l~~~~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   92 (159)
T 3fv6_A           14 LKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPN   92 (159)
T ss_dssp             HTTCBGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTS
T ss_pred             HhhCCHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCC
Confidence            4678999999985 599999999999999999999999999965444   23333321  1  12346789999998  8


Q ss_pred             cccCCCCCC------------CCcCC---CCC---eEEEEEeHHHHHHHHHhhh
Q psy15906        263 KRDSSHKGD------------ASRKD---SPG---RLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       263 ~~~~~~~~~------------~~~l~---~~g---~lvGiItRsdLi~~L~~~~  298 (352)
                      +.+++....            ...+|   ++|   +++|+||++||++++.+-.
T Consensus        93 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~  146 (159)
T 3fv6_A           93 ITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLS  146 (159)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHH
T ss_pred             cEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHh
Confidence            888875532            34444   356   9999999999999987643

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.76  E-value=4.7e-09  Score=89.10  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=74.4

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCC-Cc---cccCCcccccCC-CCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEP-MT---KHSSDGAEQSSA-GSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~-~~---~~~~d~~~~~~~-~~~~~~~~m~~~~~  264 (352)
                      +...+|+|+|++  +++++++++++.++.+.|.+++++.+||+|++. .+   ++.+|....... .+.++.++|++ +.
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~~-~~  113 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILRP-AV  113 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHCBC-CC
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHcCC-CE
Confidence            357899999996  789999999999999999999999999999752 33   344454322112 46788899975 77


Q ss_pred             cCCCC------------CCCCcCC---CCCeEEEEEeHHHHH
Q psy15906        265 DSSHK------------GDASRKD---SPGRLVGLILRSQLI  291 (352)
Q Consensus       265 ~~~~~------------~~~~~l~---~~g~lvGiItRsdLi  291 (352)
                      +++..            ++...+|   ++|+++|+||++|++
T Consensus       114 ~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          114 FVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             EEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            77643            3344444   468999999999985

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.74  E-value=3.8e-09  Score=89.55  Aligned_cols=107  Identities=9%  Similarity=-0.008  Sum_probs=80.7

Q ss_pred             Cccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--cc-------CCCCCCccc
Q psy15906        192 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QS-------SAGSTDSHK  257 (352)
Q Consensus       192 l~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~-------~~~~~~~~~  257 (352)
                      +...+|+++|.+  ++.++++++++.++.+.|.+++++.+||+|+++.+   ++..|...  ..       ...+.++.+
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~   90 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   90 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH
Confidence            457899999998  89999999999999999999999999999976444   23333221  11       134678889


Q ss_pred             CCCCCcccCCCCCC----------CCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        258 GDTSHKRDSSHKGD----------ASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       258 ~m~~~~~~~~~~~~----------~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +|.+++.+++....          ...+|   ++|+++|+||++|+++++.+..
T Consensus        91 ~m~~~~~~v~~~~~l~~a~~~m~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           91 VMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             hcCCCCceEcCCCCHHHHHHHHHhCCEEEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence            99998888874422          11144   3689999999999999997654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.72  E-value=5e-09  Score=91.04  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             Ccccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC-CCc---cccCCcccc-cCCCCCCcccCCCCCcc
Q psy15906        192 SSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVE-PMT---KHSSDGAEQ-SSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       192 l~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~-~~~---~~~~d~~~~-~~~~~~~~~~~m~~~~~  264 (352)
                      +...+|+++|+  ++++++++++++.++++.|.+++++++||+|++ +.+   ++.+|.... ....+.++.  |.+++.
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~~~v~--~~~~~~  110 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRN--RLRDPI  110 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSSCCGG--GSBCCC
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCcchhH--hcCCCe
Confidence            35788999997  468999999999999999999999999999865 343   233333211 011244555  667788


Q ss_pred             cCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        265 DSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       265 ~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++..            ++...+|   ++|+++|+||++|++.++...+
T Consensus       111 ~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          111 IVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             EECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             EECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence            88743            3344444   4689999999999999997644

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.71  E-value=5.1e-09  Score=90.52  Aligned_cols=109  Identities=15%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CCCcccccccccccC----eEEe--cCCCCHHHHHHHHHhCCCCeEEEE--eCCCCc---cccCCcccc-----------
Q psy15906        190 PLSSNITARIVKSHP----VICL--RPLETVGNIIDVLKATSHNGFPIV--DVEPMT---KHSSDGAEQ-----------  247 (352)
Q Consensus       190 ~~l~~i~V~dIM~~~----vv~l--~~~~tV~e~~~~L~~t~~~~fPVV--d~~~~~---~~~~d~~~~-----------  247 (352)
                      ..+...+|+|+|+++    ++++  ++++++.++.+.|.+++++++||+  |+++.+   ++..|....           
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~   85 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV   85 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCc
Confidence            446788999999987    7888  999999999999999999999999  554344   232332110           


Q ss_pred             -----------------cCCCCCCcccCCCCCcccCCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHh
Q psy15906        248 -----------------SSAGSTDSHKGDTSHKRDSSHKGD------------ASRKD--SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       248 -----------------~~~~~~~~~~~m~~~~~~~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~  296 (352)
                                       ....+.++.++|++++.+++....            ...++  ++|+++|+|||+||++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           86 VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             cccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHHH
Confidence                             013456788999988888875432            33344  37999999999999999876


Q ss_pred             hh
Q psy15906        297 KI  298 (352)
Q Consensus       297 ~~  298 (352)
                      ..
T Consensus       166 ~~  167 (185)
T 2j9l_A          166 MA  167 (185)
T ss_dssp             HC
T ss_pred             hh
Confidence            53

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.70  E-value=2.5e-09  Score=87.60  Aligned_cols=105  Identities=15%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcc--cc-cC--CCCCCcccCCCCCc
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGA--EQ-SS--AGSTDSHKGDTSHK  263 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~--~~-~~--~~~~~~~~~m~~~~  263 (352)
                      ++..+|+|+|++++.++++++++.++.+.|.+++++.+||+|+++.+   ++.+|..  .. .+  ..+.++.++|++++
T Consensus         5 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (133)
T 1y5h_A            5 FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSI   84 (133)
T ss_dssp             ---CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCC
T ss_pred             hhhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCC
Confidence            34679999999999999999999999999999999999999765344   2333332  11 11  23578899999988


Q ss_pred             ccCCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHh
Q psy15906        264 RDSSHKGD------------ASRKD--SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       264 ~~~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~  296 (352)
                      .+++....            ...+|  ++|+++|+||++|+++.+.+
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           85 YYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTCC-
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            88875533            33444  25899999999999987643

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.68  E-value=6.9e-08  Score=100.39  Aligned_cols=124  Identities=10%  Similarity=0.041  Sum_probs=94.6

Q ss_pred             cCcHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHH--HHHHhcCCCCc
Q psy15906         38 QVPEKSVRTMLHDPK----GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSL--FLQSIFPEATW  111 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~----~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~--~~~~~~p~~~~  111 (352)
                      |+|-..++..+++..    +...+.+    ++.|++.+.+|+|+|.+.|-..|+..+||++|..++.  .+.....+.  
T Consensus        79 GsGIp~v~~~l~g~~~~~~~~~~~~~----~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~~--  152 (632)
T 3org_A           79 GSGLPQMKSILSGFYDKMRSALELRV----LFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDR--  152 (632)
T ss_dssp             BCSHHHHHHHTTTTHHHHGGGGSHHH----HHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHSH--
T ss_pred             CCCHHHHHHHHhCccccccccccHHH----HHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccCCH--
Confidence            455566776665421    1123333    4789999999999999999999999999999998877  554322111  


Q ss_pred             CChhHHHHHHHHHHHHhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHHhhc
Q psy15906        112 IDPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFF  167 (352)
Q Consensus       112 ~~~~~~alvG~aa~l~g~~r~pls~~vi~~ElTg~---~~~~lp~m~~~~~a~~v~~~~  167 (352)
                      .+...+..+|+||-+|++.++|++++++.+|....   ...+.|.++++++|.++.+.+
T Consensus       153 ~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  211 (632)
T 3org_A          153 ALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL  211 (632)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            23357899999999999999999999999998753   245789999999999887754

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.65  E-value=2e-08  Score=94.35  Aligned_cols=104  Identities=16%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhC-----CCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t-----~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~  264 (352)
                      ...+|+++|++++++++++++++++.+.++++     +++.+||||+++.+   ++.+|.  .....+.++.++|+++++
T Consensus       135 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dl--l~~~~~~~v~~im~~~~~  212 (286)
T 2oux_A          135 EDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL--IVNDDDTLIADILNERVI  212 (286)
T ss_dssp             CTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHH--TTSCTTSBHHHHSBSCCC
T ss_pred             ChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHH--HcCCCCCcHHHHcCCCCe
Confidence            46789999999999999999999999999987     78889999976444   233333  344567889999999998


Q ss_pred             cCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        265 DSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       265 ~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++...            +...+|   ++|+++|+||++|++..+.+..
T Consensus       213 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          213 SVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            887543            333444   4789999999999999987654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.63  E-value=1.3e-08  Score=85.87  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=77.9

Q ss_pred             cccccccc------cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCccc--cc---CCCCCCcccCCC
Q psy15906        195 ITARIVKS------HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGAE--QS---SAGSTDSHKGDT  260 (352)
Q Consensus       195 i~V~dIM~------~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~~--~~---~~~~~~~~~~m~  260 (352)
                      .+|+|+|+      +++.++++++++.++.+.|.+++++.+||+|++ .+ +  +..|...  ..   ...+.++.++|+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~-~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSS-SEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCC-EEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            57999999      556999999999999999999999999997655 43 2  3333311  11   124678999999


Q ss_pred             CCcccCCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        261 SHKRDSSHKGD------------ASRKD--SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       261 ~~~~~~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +++.+++....            ...+|  ++|+++|+||++|+++++.+..
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTC
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHH
Confidence            99888875532            33444  3799999999999999997643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.61  E-value=1.7e-08  Score=87.90  Aligned_cols=103  Identities=11%  Similarity=0.072  Sum_probs=78.7

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c---cCCCCCCcccCCCCCccc
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q---SSAGSTDSHKGDTSHKRD  265 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~---~~~~~~~~~~~m~~~~~~  265 (352)
                      .++|+++|+++++++++++++.++.++|.+++++.+||+|+++.+   ++.+|...  .   ....+.++.++|.+++.+
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~   87 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK   87 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCcE
Confidence            479999999999999999999999999999999999999865344   23333321  1   123456899999998888


Q ss_pred             CCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        266 SSHKG------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       266 ~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ++...            +...+|   ++|+++|+||++||++++.+
T Consensus        88 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           88 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             EETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            87442            234444   35899999999999987765

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.57  E-value=5.4e-08  Score=90.68  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhC-----CCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t-----~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~  264 (352)
                      ...+|+++|++++++++++++++++.+.++++     +...+||+|+++.+   ++.+|.  .....+.++.++|+++++
T Consensus       133 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dl--l~~~~~~~v~~im~~~~~  210 (278)
T 2yvy_A          133 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL--IVADPRTRVAEIMNPKVV  210 (278)
T ss_dssp             CTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHH--HHSCTTCBSTTTSBSSCC
T ss_pred             CcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHH--hcCCCCCcHHHHhCCCCe
Confidence            35689999999999999999999999999986     67899999976444   233333  333567889999999998


Q ss_pred             cCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        265 DSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       265 ~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++...            +...+|   ++|+++|+||++|++..+.+.
T Consensus       211 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          211 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence            887543            233444   478999999999999987643

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=6.9e-08  Score=79.25  Aligned_cols=61  Identities=7%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      +++|+|+|++  ++++++++++++++.+.|.+++++++||++++                                    
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~------------------------------------   44 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS------------------------------------   44 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS------------------------------------
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC------------------------------------
Confidence            3689999974  78999999999999999999999999999764                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                            +++++|+|+++|+++++.+
T Consensus        45 ------~~~lvGivt~~dl~~~~~~   63 (130)
T 3hf7_A           45 ------LDDAISMLRVREAYRLMTE   63 (130)
T ss_dssp             ------GGGEEEEEEHHHHHHHHTS
T ss_pred             ------CCcEEEEEEHHHHHHHHhc
Confidence                  2789999999999998865

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.54  E-value=6.9e-08  Score=80.86  Aligned_cols=59  Identities=8%  Similarity=0.101  Sum_probs=55.2

Q ss_pred             ccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        195 ITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       195 i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ++|+|+|++  +++++++++++.++.+.|.+++++.+||+|++                                     
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------------------------------   70 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-------------------------------------   70 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-------------------------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------------------------------
Confidence            589999999  99999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                            |+++|+||++|+++++.+
T Consensus        71 ------~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           71 ------MNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             ------CBEEEEEEHHHHHHHHCS
T ss_pred             ------CcEEEEecHHHHHHHHhc
Confidence                  799999999999998864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.53  E-value=1.8e-07  Score=77.30  Aligned_cols=61  Identities=11%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      .++|+|+|++++.++++++++.++.+.|.+++++.+||+|++                                      
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------------------------------------   45 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD--------------------------------------   45 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT--------------------------------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            468999999999999999999999999999999999999975                                      


Q ss_pred             cCCCCC--eEEEEEeHHHHHHHHHhh
Q psy15906        274 RKDSPG--RLVGLILRSQLIILIKHK  297 (352)
Q Consensus       274 ~l~~~g--~lvGiItRsdLi~~L~~~  297 (352)
                           +  +++|+|+++|+++.+.++
T Consensus        46 -----~~~~~~Givt~~dl~~~~~~~   66 (141)
T 2rih_A           46 -----NPKRPVAVVSERDILRAVAQR   66 (141)
T ss_dssp             -----EEEEEEEEEEHHHHHHHHHTT
T ss_pred             -----CcceeEEEEEHHHHHHHHhcC
Confidence                 6  899999999999987643

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.47  E-value=3.1e-07  Score=77.29  Aligned_cols=61  Identities=10%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++| +++.++++++++.++.+.|.+++.+.+||+|++                                      
T Consensus        85 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~--------------------------------------  125 (153)
T 3oco_A           85 KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY--------------------------------------  125 (153)
T ss_dssp             TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTT--------------------------------------
T ss_pred             CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC--------------------------------------
Confidence            56799999 899999999999999999999999999999975                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        274 RKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                           |+++|+||++|+++++....
T Consensus       126 -----g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A          126 -----GGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             -----SCEEEEECHHHHHHHHHC--
T ss_pred             -----CCEEEEeeHHHHHHHHhccC
Confidence                 89999999999999987654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.47  E-value=8.6e-08  Score=96.35  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhC-----CCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t-----~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~  264 (352)
                      ...+|+++|++++++++++++++++.+.++++     +...+||+|+++..   ++.+|.  .....+.++.++|+++++
T Consensus       153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dl--l~~~~~~~v~dim~~~~~  230 (473)
T 2zy9_A          153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL--IVADPRTRVAEIMNPKVV  230 (473)
T ss_dssp             CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHH--HHSCTTSBGGGTSBSSCC
T ss_pred             CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHH--hcCCCCCcHHHHhCCCCe
Confidence            35689999999999999999999999999886     46899999976444   233433  334567899999999998


Q ss_pred             cCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        265 DSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       265 ~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++...            +...+|   ++|+++|+||++|+++.+.+.
T Consensus       231 ~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          231 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             CEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             EEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            887553            333444   478999999999999998654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.46  E-value=2.4e-07  Score=78.13  Aligned_cols=64  Identities=20%  Similarity=0.412  Sum_probs=57.0

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ...++|+|+|+++++++++++++.++.+.|.+++++++||+|++                                    
T Consensus        10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~------------------------------------   53 (164)
T 2pfi_A           10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST------------------------------------   53 (164)
T ss_dssp             CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCT------------------------------------
T ss_pred             ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecC------------------------------------
Confidence            45789999999999999999999999999999999999999862                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                           ++|+++|+||++||...+..
T Consensus        54 -----~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           54 -----ESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             -----TTCBEEEEEEHHHHHHHHHC
T ss_pred             -----CCCEEEEEEEHHHHHHHHHh
Confidence                 02799999999999988754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.44  E-value=2.6e-07  Score=84.59  Aligned_cols=103  Identities=22%  Similarity=0.222  Sum_probs=79.3

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--ccC-CCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QSS-AGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~~-~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+|+++|+++++++++++++.++.+.+.+++++.+||+|+++.+   ++.+|...  ... ..+.++.++|++++.+++
T Consensus        83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~  162 (280)
T 3kh5_A           83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVAT  162 (280)
T ss_dssp             TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBC
T ss_pred             hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEEC
Confidence            468999999999999999999999999999999999999876444   23334321  111 234578999999988887


Q ss_pred             CCCC------------CCcCC--CCCeEEEEEeHHHHHHHHHh
Q psy15906        268 HKGD------------ASRKD--SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       268 ~~~~------------~~~l~--~~g~lvGiItRsdLi~~L~~  296 (352)
                      ....            ...+|  ++|+++|+||++|+++.+.+
T Consensus       163 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          163 PGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTS
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhh
Confidence            5432            33333  47899999999999999864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.41  E-value=1.9e-07  Score=86.80  Aligned_cols=103  Identities=8%  Similarity=0.031  Sum_probs=80.0

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--ccCCCCCCcccCCCCCcccCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--QSSAGSTDSHKGDTSHKRDSSH  268 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~~~~~~~~~~~~m~~~~~~~~~  268 (352)
                      ..+|+++|+++++++.+++++.++.+.|.+++++.+||+|+++.+   ++.+|...  .....+.++.++|++++.+++.
T Consensus        92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~  171 (296)
T 3ddj_A           92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYK  171 (296)
T ss_dssp             TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEET
T ss_pred             cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECC
Confidence            568999999999999999999999999999999999999876444   33344321  2234456889999998888875


Q ss_pred             CC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        269 KG------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       269 ~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ..            +...+|   ++|+++|+||++|+++.+.+
T Consensus       172 ~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  214 (296)
T 3ddj_A          172 EVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK  214 (296)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            42            233343   47899999999999999873

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.40  E-value=3.3e-07  Score=75.14  Aligned_cols=60  Identities=10%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++| +++.++++++++.++.+.|.+++.+..||+|++                                     
T Consensus        68 ~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-------------------------------------  109 (130)
T 3hf7_A           68 TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-------------------------------------  109 (130)
T ss_dssp             CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTT-------------------------------------
T ss_pred             chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCC-------------------------------------
Confidence            356799999 678899999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                            |+++|+||++|+++++..
T Consensus       110 ------g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A          110 ------GDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ------SCEEEEEEHHHHHHHHHC
T ss_pred             ------CCEEEEeeHHHHHHHHhC
Confidence                  799999999999999864

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.39  E-value=1.3e-07  Score=86.02  Aligned_cols=61  Identities=20%  Similarity=0.360  Sum_probs=50.0

Q ss_pred             cccccccccc-cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        193 SNITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       193 ~~i~V~dIM~-~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ...+++++|+ ++++++++++++.++.+.|.+++++.+||||++                                    
T Consensus       183 ~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~------------------------------------  226 (245)
T 3l2b_A          183 QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN------------------------------------  226 (245)
T ss_dssp             GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT------------------------------------
T ss_pred             cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCC------------------------------------
Confidence            4678999999 899999999999999999999999999999876                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                             |+++|+||++|++++.++
T Consensus       227 -------~~~~Giit~~dll~~~~~  244 (245)
T 3l2b_A          227 -------NKVVGSIARFHLISTHKK  244 (245)
T ss_dssp             -------CBEEEEEECC--------
T ss_pred             -------CeEEEEEEHHHhhchhhc
Confidence                   799999999999987643

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.39  E-value=1.2e-07  Score=79.77  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEE-eCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIV-DVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVV-d~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      ...+|+++|++  +++++++++++.++.+.|.+++++++||+ |++                                  
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----------------------------------   63 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----------------------------------   63 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----------------------------------
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----------------------------------
Confidence            56789999996  89999999999999999999999999999 543                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                              +++++|+||++||++++.+.
T Consensus        64 --------~~~lvGivt~~dl~~~~~~~   83 (153)
T 3oco_A           64 --------KDKIIGYAYNYDIVRQARID   83 (153)
T ss_dssp             --------EEEEEEEEEHHHHHHHHHHH
T ss_pred             --------CCcEEEEEEHHHHHhHHhcC
Confidence                    27999999999999987654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.35  E-value=1.7e-07  Score=86.12  Aligned_cols=100  Identities=13%  Similarity=0.138  Sum_probs=59.7

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCCCCC-
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG-  270 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~-  270 (352)
                      ++|+++|+++++++++++++.++.+.+.+++++.+||+|+++..   ++.+|.  .....+.++.++|.+++.+++... 
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl--~~~~~~~~v~~~m~~~~~~v~~~~~   78 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI--LVNPDEEQLAMLVKRDVPVVKENDT   78 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC------------CCCBSCCCEEETTSB
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHH--HhhhccCCHHHHcCCCCcEECCCCc
Confidence            47899999999999999999999999999999999999954344   344444  333346788999998887776432 


Q ss_pred             -----------CCCcCC---CCCeEEEEEeHHHHHH-HHHh
Q psy15906        271 -----------DASRKD---SPGRLVGLILRSQLII-LIKH  296 (352)
Q Consensus       271 -----------~~~~l~---~~g~lvGiItRsdLi~-~L~~  296 (352)
                                 +...+|   ++|+++|+||++|+++ .+.+
T Consensus        79 l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           79 LKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence                       233343   3579999999999998 7654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.34  E-value=7.3e-07  Score=80.97  Aligned_cols=60  Identities=12%  Similarity=0.266  Sum_probs=55.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+|+|+|+++++++++++++.++++.|.+++++.+||+|++                                      
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------------------------------------   47 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------------------------------------   47 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------------------------------------
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            568999999999999999999999999999999999999975                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        274 RKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                           |+++|+||++|+++++..
T Consensus        48 -----~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           48 -----NHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             -----CBEEEEEEHHHHHHHHHC
T ss_pred             -----CEEEEEEEHHHHHHHHHH
Confidence                 799999999999998854

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.34  E-value=5.1e-07  Score=74.26  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=53.2

Q ss_pred             cccccccccc------CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSH------PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~------~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+++++|.+      ++.++++++++.++.+.|.+++.+.+||+|++                                
T Consensus        76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~--------------------------------  123 (144)
T 2nyc_A           76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV--------------------------------  123 (144)
T ss_dssp             CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT--------------------------------
T ss_pred             CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCC--------------------------------
Confidence            5689999986      68899999999999999999999999999875                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                                 |+++|+||++|+++.+.+
T Consensus       124 -----------g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          124 -----------GRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             -----------SBEEEEEEHHHHHHHHHH
T ss_pred             -----------CCEEEEEEHHHHHHHHHh
Confidence                       799999999999998864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.33  E-value=3.5e-07  Score=84.00  Aligned_cols=61  Identities=25%  Similarity=0.337  Sum_probs=56.2

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++|+++++++++++++.++.+.|.+++.+.+||+|++                                     
T Consensus       219 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------------------------------------  261 (282)
T 2yzq_A          219 PNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE-------------------------------------  261 (282)
T ss_dssp             CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT-------------------------------------
T ss_pred             ccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCC-------------------------------------
Confidence            4678999999999999999999999999999999999999965                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                            |+++|+|||+|+++++.+
T Consensus       262 ------~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          262 ------GDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             ------TEEEEEEEHHHHGGGGCC
T ss_pred             ------CCEEEEEeHHHHHHHHHh
Confidence                  799999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.32  E-value=7.4e-07  Score=73.58  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  273 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~  273 (352)
                      ..+++++|.+++.+++++ ++.++.+.|.+++.+.+||+|++                                      
T Consensus        70 ~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~--------------------------------------  110 (141)
T 2rih_A           70 DGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKN--------------------------------------  110 (141)
T ss_dssp             TSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTT--------------------------------------
T ss_pred             CCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCC--------------------------------------
Confidence            568999999999999999 99999999999999999999965                                      


Q ss_pred             cCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        274 RKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       274 ~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                           |+++|+||++|+++++..
T Consensus       111 -----g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A          111 -----GELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             -----SCEEEEEEHHHHHSCHHH
T ss_pred             -----CcEEEEEEHHHHHHHHHH
Confidence                 789999999999887654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.26  E-value=1.6e-06  Score=71.25  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=54.9

Q ss_pred             ccccccc---ccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        193 SNITARI---VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       193 ~~i~V~d---IM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      .+.++++   +|.+++.++++++++.++.+.|.+++++.+||+|++                                  
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------------------   51 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----------------------------------   51 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------------------
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC----------------------------------
Confidence            3557888   888999999999999999999999999999999875                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                               |+++|+|+++|+++.+.+
T Consensus        52 ---------~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A           52 ---------GYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             ---------CBEEEEEEHHHHHHHHHT
T ss_pred             ---------CcEEEEEcHHHHHHHhcc
Confidence                     789999999999988764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.24  E-value=3.9e-07  Score=92.43  Aligned_cols=101  Identities=16%  Similarity=0.068  Sum_probs=78.2

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC--CCCc---cccCCcccccCCCCCCcccCCCC-CcccCCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV--EPMT---KHSSDGAEQSSAGSTDSHKGDTS-HKRDSSH  268 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~--~~~~---~~~~d~~~~~~~~~~~~~~~m~~-~~~~~~~  268 (352)
                      ++.++.|.+++++++++++++++.+++.+++++++||+|+  ++.+   ++.+|... ....+.++.++|++ ++++++.
T Consensus       113 ~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~-~~~~~~~V~~vM~~~~~vtv~~  191 (511)
T 3usb_A          113 KRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF-IQDYSIKISDVMTKEQLITAPV  191 (511)
T ss_dssp             HTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT-CCCSSSBHHHHCCCCCCCCEET
T ss_pred             hccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh-hccCCCcHHHhcccCCCEEECC
Confidence            4567788889999999999999999999999999999996  4333   33444421 23457789999998 7777774


Q ss_pred             CC------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        269 KG------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       269 ~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ..            +...+|   ++|+++|+||++|+++.+..
T Consensus       192 ~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          192 GTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             TCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            42            244443   57999999999999999876

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.22  E-value=2.9e-07  Score=93.09  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCC-CC-cccCCCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDT-SH-KRDSSHK  269 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~-~~-~~~~~~~  269 (352)
                      .+++++|.+++++++++++++++.+++.+++++++||+|+++.+   ++.+|.. .....+.++.++|+ ++ ++++...
T Consensus        89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~-~~~~~~~~v~diM~p~~~~vtv~~~  167 (496)
T 4fxs_A           89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR-FVTDLTKSVAAVMTPKERLATVKEG  167 (496)
T ss_dssp             HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT-TCCCTTSBGGGTSEEGGGCCEEECC
T ss_pred             cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh-hcccCCCcHHHHhcCCCCCEEECCC
Confidence            45688999999999999999999999999999999999976444   3444442 23355778999999 53 6666532


Q ss_pred             ------------CCCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        270 ------------GDASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       270 ------------~~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                                  ++.+.+|   ++|+++|+||++|+++....
T Consensus       168 ~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          168 ATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESK  209 (496)
T ss_dssp             ----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCC
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcc
Confidence                        2333343   57999999999999988654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.21  E-value=3.6e-06  Score=62.25  Aligned_cols=46  Identities=13%  Similarity=0.372  Sum_probs=42.2

Q ss_pred             eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCCCeEEEE
Q psy15906        205 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSPGRLVGL  284 (352)
Q Consensus       205 vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~g~lvGi  284 (352)
                      ++++++++++.++.++|.+++.+++||+|+                                            |+++||
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------------------------------------~~lvGI   37 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------------------------------------DEILGV   37 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------------------------------------TEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------------------------------------CEEEEE
Confidence            678999999999999999999999999974                                            689999


Q ss_pred             EeHHHHHHHH
Q psy15906        285 ILRSQLIILI  294 (352)
Q Consensus       285 ItRsdLi~~L  294 (352)
                      ||.+|+++.+
T Consensus        38 vT~~Di~~~~   47 (70)
T 3ghd_A           38 VTERDILDKV   47 (70)
T ss_dssp             EEHHHHHHHT
T ss_pred             EEHHHHHHHH
Confidence            9999998765

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.17  E-value=2.3e-07  Score=93.36  Aligned_cols=96  Identities=23%  Similarity=0.269  Sum_probs=1.0

Q ss_pred             ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC----CCc--cccCCcccccCCCCCCcccCCCCCcccCCC---
Q psy15906        198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE----PMT--KHSSDGAEQSSAGSTDSHKGDTSHKRDSSH---  268 (352)
Q Consensus       198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~----~~~--~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~---  268 (352)
                      +..|..+++++.|+.|+.|+.+++.+.++.++||+|+.    +.+  +|.+|.  .....++++.++|+++.++++.   
T Consensus       141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~--rf~d~~~~V~evMT~~lvt~~~~~~  218 (556)
T 4af0_A          141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV--QFQDAETPIKSVMTTEVVTGSSPIT  218 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc--cccccceEhhhhcccceEEecCCCC
Confidence            45677889999999999999999999999999999863    122  344554  2235678999999999888762   


Q ss_pred             ---------CCCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        269 ---------KGDASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       269 ---------~~~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                               ++.++.+|   ++++|+|+|||+|+++.-.
T Consensus       219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence                     23455555   4899999999999988754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.16  E-value=1.9e-06  Score=79.96  Aligned_cols=63  Identities=14%  Similarity=0.262  Sum_probs=57.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++|++++.++++++++.++.+.|.+++.+.+||+|++                                     
T Consensus       225 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-------------------------------------  267 (296)
T 3ddj_A          225 YGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKD-------------------------------------  267 (296)
T ss_dssp             HTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTT-------------------------------------
T ss_pred             cCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------------------------------
Confidence            3568999999999999999999999999999999999999975                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                            |+++|+||++||++++.+..
T Consensus       268 ------g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          268 ------NTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             ------SCEEEEEEHHHHHHHHHHHH
T ss_pred             ------CeEEEEEcHHHHHHHHHHHh
Confidence                  79999999999999997653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.15  E-value=2.8e-06  Score=71.44  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             ccccccccccC------eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSHP------VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~~------vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+++++|.++      +.++++++++.++.+.|.+++.+.+||+| +                                
T Consensus        83 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~--------------------------------  129 (164)
T 2pfi_A           83 QQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-R--------------------------------  129 (164)
T ss_dssp             CCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-T--------------------------------
T ss_pred             cchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-C--------------------------------
Confidence            45788999876      78899999999999999999999999999 5                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                                 |+++|+||++||++++.+..
T Consensus       130 -----------g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          130 -----------GRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             -----------TEEEEEEEHHHHHHHHHHHH
T ss_pred             -----------CEEEEEEEHHHHHHHHHhhh
Confidence                       68999999999999987644

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.15  E-value=2.5e-07  Score=93.41  Aligned_cols=102  Identities=10%  Similarity=0.070  Sum_probs=4.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc--cccCCcccccCCCCCCcccCCC-C-CcccCCCC-
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT--KHSSDGAEQSSAGSTDSHKGDT-S-HKRDSSHK-  269 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~--~~~~d~~~~~~~~~~~~~~~m~-~-~~~~~~~~-  269 (352)
                      .+++++|.+++++++++++++++++++.+++++++||+|+++.+  ++.+|.. .....+.++.++|+ + ++.+++.. 
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~~~~~~~V~~vMtp~~~~vtv~~~~  166 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VKPNAGDTVAAIMTPKDKLVTAREGT  166 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hccccCCcHHHHhccCCCCEEECCCC
Confidence            46789999999999999999999999999999999999955333  3455542 23355778999999 5 57777633 


Q ss_pred             -----------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 -----------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 -----------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                                 ++...+|   ++|+++|+|||+|++++.++.
T Consensus       167 ~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p  208 (490)
T 4avf_A          167 PLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYP  208 (490)
T ss_dssp             ----------------------------------------CT
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCc
Confidence                       2334444   478999999999999987653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.12  E-value=3.1e-07  Score=92.58  Aligned_cols=156  Identities=20%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             HHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCCchhHHHHHHcCCCCCCCCC-C-----CCCcccccccccccCeEEec
Q psy15906        136 LTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDP-P-----PLSSNITARIVKSHPVICLR  209 (352)
Q Consensus       136 ~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~~-~-----~~l~~i~V~dIM~~~vv~l~  209 (352)
                      -+-+..|+|+++.+.+|++.+.+....     ...+-..+.+..++.++.... .     ....-.+++++|++++++++
T Consensus        35 ~v~~~~eLt~~~~l~iP~is~~m~~v~-----~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~~~~~v~  109 (494)
T 1vrd_A           35 DVKIDTRLTRQIRINIPLVSAAMDTVT-----EAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIYDPITVT  109 (494)
T ss_dssp             GSCCCEESSSSCEESSSEEECCCTTTC-----SHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC------------
T ss_pred             ceEEEehhhCCCccCceeEecchHHHh-----HHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCccCCeEEC
Confidence            345567889999999998654422100     011111111222221111000 0     01123457899999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCC--CcccCCCC------------CCC
Q psy15906        210 PLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTS--HKRDSSHK------------GDA  272 (352)
Q Consensus       210 ~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~--~~~~~~~~------------~~~  272 (352)
                      ++++++++++.|.+++++++||+|+++.+   ++.+|... ....+.++.++|++  ++.+++..            .++
T Consensus       110 ~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~-~~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~  188 (494)
T 1vrd_A          110 PDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF-EKNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRI  188 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh-hcCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCC
Confidence            99999999999999999999999965333   34444422 12346789999998  88888743            233


Q ss_pred             CcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        273 SRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       273 ~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      ..+|   ++|+++|+||++|+++.+...
T Consensus       189 ~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          189 EKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------CHHHHTCT
T ss_pred             cEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            4444   478999999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.12  E-value=2.8e-07  Score=93.26  Aligned_cols=104  Identities=11%  Similarity=0.035  Sum_probs=4.3

Q ss_pred             ccccccc-cccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC---CCc---cccCCcccccCCCCCCcccCCCCC--cc
Q psy15906        194 NITARIV-KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE---PMT---KHSSDGAEQSSAGSTDSHKGDTSH--KR  264 (352)
Q Consensus       194 ~i~V~dI-M~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~---~~~---~~~~d~~~~~~~~~~~~~~~m~~~--~~  264 (352)
                      .++..++ |++++++++++++++++++++.+++++++||+|++   +.+   ++.+|........+.++.++|+++  ++
T Consensus        95 ~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~  174 (503)
T 1me8_A           95 AVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLV  174 (503)
T ss_dssp             HHHTTTC-------------------------------------------------------------------------
T ss_pred             hhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCE
Confidence            4455666 99999999999999999999999999999999874   233   344444221234567899999987  87


Q ss_pred             cCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        265 DSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       265 ~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++..            ++...+|   ++|+++|+||++||++.+...
T Consensus       175 tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          175 TAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -----------------------------------------------C
T ss_pred             EEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            77733            2333444   378999999999999988654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.09  E-value=2.1e-06  Score=71.65  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ...+++++|++++.++++++++.++.+.|.+++.+.+||+|+
T Consensus        93 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (149)
T 3k2v_A           93 RDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG  134 (149)
T ss_dssp             TTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC
Confidence            467899999999999999999999999999999999999985

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.09  E-value=1.7e-06  Score=79.00  Aligned_cols=59  Identities=17%  Similarity=0.359  Sum_probs=54.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ...+++++|++++.++++++++.++.+.|.+++.+.+||+|++                                     
T Consensus       221 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-------------------------------------  263 (280)
T 3kh5_A          221 TNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN-------------------------------------  263 (280)
T ss_dssp             HHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTT-------------------------------------
T ss_pred             hCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-------------------------------------
Confidence            4568999999999999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLIILI  294 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L  294 (352)
                            |+++|+||++|+++++
T Consensus       264 ------g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          264 ------LRIKGIITEKDVLKYF  279 (280)
T ss_dssp             ------CBEEEEEEHHHHGGGG
T ss_pred             ------CeEEEEEeHHHHHHhh
Confidence                  7999999999998765

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.08  E-value=6e-06  Score=77.49  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=55.4

Q ss_pred             cccccccccc------CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSH------PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~------~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+++++|++      ++.++++++++.++.+.|.+++.+.+||||++                                
T Consensus       255 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~--------------------------------  302 (323)
T 3t4n_C          255 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV--------------------------------  302 (323)
T ss_dssp             TSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTT--------------------------------
T ss_pred             cCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCC--------------------------------
Confidence            4589999998      78999999999999999999999999999875                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                                 |+++|+||++|+++++..
T Consensus       303 -----------~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          303 -----------GRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             -----------SBEEEEEEHHHHHHHHHH
T ss_pred             -----------CcEEEEEEHHHHHHHHHh
Confidence                       799999999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.06  E-value=4.3e-06  Score=84.09  Aligned_cols=100  Identities=19%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEe--CCCCc---cccCCcccccCCCCCCcccCCCC-CcccCCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD--VEPMT---KHSSDGAEQSSAGSTDSHKGDTS-HKRDSSHK  269 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd--~~~~~---~~~~d~~~~~~~~~~~~~~~m~~-~~~~~~~~  269 (352)
                      .++++|.+++.+++++++++++.+.+.+++++++||+|  +++.+   ++.+|.... ...+.++.++|++ ++++++..
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-~~~~~~v~~im~~~~~~~v~~~  169 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-SDYNAPISEHMTSEHLVTAAVG  169 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-SCSSSBTTTSCCCSCCCCEETT
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-ccCCCcHHHHcCCCCCEEECCC
Confidence            46889999999999999999999999999999999998  54343   233343211 2357789999998 77777644


Q ss_pred             C------------CCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        270 G------------DASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       270 ~------------~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      .            +...+|   ++|+++|+||++|+++.+.+
T Consensus       170 ~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          170 TDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            2            333444   47899999999999999874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.03  E-value=6.1e-06  Score=77.81  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             Cccccccccc--ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        192 SSNITARIVK--SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       192 l~~i~V~dIM--~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +...+|+|+|  +++++++++++++.++++.|.+++++.+||+|++                                  
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~----------------------------------   77 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------------------------------   77 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT----------------------------------
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC----------------------------------
Confidence            3567999999  7889999999999999999999999999999976                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                              .++++|+|+++|++..+..
T Consensus        78 --------~~~~vGivt~~Dll~~l~~   96 (330)
T 2v8q_E           78 --------KQSFVGMLTITDFINILHR   96 (330)
T ss_dssp             --------TTEEEEEEEHHHHHHHHHH
T ss_pred             --------CCeEEEEEEHHHHHHHHHH
Confidence                    3689999999999988754

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=97.97  E-value=8e-06  Score=76.66  Aligned_cols=63  Identities=21%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             cccccccc---cccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        193 SNITARIV---KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       193 ~~i~V~dI---M~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      ...+++++   |+++++++++++++.++.+.|.+++++.+||+|++                                  
T Consensus       185 ~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~----------------------------------  230 (323)
T 3t4n_C          185 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----------------------------------  230 (323)
T ss_dssp             CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------------------
T ss_pred             hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC----------------------------------
Confidence            34589999   99999999999999999999999999999999875                                  


Q ss_pred             CCCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        270 GDASRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       270 ~~~~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                               |+++|+||++|+++++....
T Consensus       231 ---------~~~~Giit~~dl~~~~~~~~  250 (323)
T 3t4n_C          231 ---------GYLINVYEAYDVLGLIKGGI  250 (323)
T ss_dssp             ---------CBEEEEEETTHHHHHHHTTH
T ss_pred             ---------CeEEEEEeHHHHHHHHhhch
Confidence                     79999999999999987654

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=97.92  E-value=1.4e-05  Score=75.37  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             cccccccccc------CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSH------PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~------~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+++++|++      ++.++++++++.++.+.|.+++.+.+||||++                                
T Consensus       250 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~--------------------------------  297 (334)
T 2qrd_G          250 DLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN--------------------------------  297 (334)
T ss_dssp             GSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTT--------------------------------
T ss_pred             cCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCC--------------------------------
Confidence            5679999984      89999999999999999999999999999875                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                                 |+++|+||++|+++++.+.
T Consensus       298 -----------g~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          298 -----------LKLEGILSLADILNYIIYD  316 (334)
T ss_dssp             -----------CBEEEEEEHHHHHHHHHSC
T ss_pred             -----------CeEEEEEeHHHHHHHHHhc
Confidence                       7999999999999998754

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.84  E-value=7.8e-07  Score=90.17  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhCCchhhHHHHHHH-------HHHHHHHhhcCCchhHHHHHHcCCCCCCCC-CCC-----CCccccccccc
Q psy15906        135 SLTIILIEATGNISFGLPLMLTL-------ITAKWIGDFFTEGLYDIHIQLSGIPLLAWD-PPP-----LSSNITARIVK  201 (352)
Q Consensus       135 s~~vi~~ElTg~~~~~lp~m~~~-------~~a~~v~~~~~~~iy~~~l~~~g~p~l~~~-~~~-----~l~~i~V~dIM  201 (352)
                      +.+.+..|+|+++.+.+|+|.+.       -++..++..            .+..++... .++     ...-.+++++|
T Consensus        47 ~~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~------------gg~gii~~~~t~e~~~~~v~~v~~~~~im  114 (514)
T 1jcn_A           47 DEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALM------------GGIGFIHHNCTPEFQANEVRKVKNFEQGF  114 (514)
T ss_dssp             GGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHT------------TCEEEECCSSCHHHHHHHHHHHHTCCTTS
T ss_pred             ceeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhc------------CCeeEEecCCCHHHHHHHHHhhhhhhhcc
Confidence            56777889999999999998762       233333322            221111100 000     00124688999


Q ss_pred             ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC---CCc---cccCCccccc-CCCCCCcccCCCC--CcccCCCCCC-
Q psy15906        202 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE---PMT---KHSSDGAEQS-SAGSTDSHKGDTS--HKRDSSHKGD-  271 (352)
Q Consensus       202 ~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~---~~~---~~~~d~~~~~-~~~~~~~~~~m~~--~~~~~~~~~~-  271 (352)
                      .+++++++++++++++.++|.+++++++||+|++   +.+   ++.+|..... ...+.++.++|++  ++++++.... 
T Consensus       115 ~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~~tv~~~~~l  194 (514)
T 1jcn_A          115 ITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTL  194 (514)
T ss_dssp             CSSCCCCCC-----------------CEESCC--------CCEECTTTTC----------------CCBCCCCEETTCCS
T ss_pred             ccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCCeEECCCCCH
Confidence            9999999999999999999999999999999872   233   3444442211 1346789999998  8888874432 


Q ss_pred             -----------CCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        272 -----------ASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       272 -----------~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                                 .+.+|   ++|+++|+|||+|+++.+..
T Consensus       195 ~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          195 KEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             TTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCC
T ss_pred             HHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhC
Confidence                       33444   47899999999999887653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=97.84  E-value=1.8e-05  Score=74.54  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      ...+|+|+|++  +++++++++++.++++.|.+++++.+||+|++                                   
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~-----------------------------------   64 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE-----------------------------------   64 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT-----------------------------------
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC-----------------------------------
Confidence            46899999975  57899999999999999999999999999875                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        271 DASRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                             .++++|+|+.+|++..+.
T Consensus        65 -------~~~~vGiv~~~Dl~~~~~   82 (334)
T 2qrd_G           65 -------ANKFAGLLTMADFVNVIK   82 (334)
T ss_dssp             -------TTEEEEEECHHHHHHHHH
T ss_pred             -------CCeEEEEEEHHHHHHHHH
Confidence                   379999999999998774

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.76  E-value=2.8e-05  Score=71.66  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=50.2

Q ss_pred             cccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCC
Q psy15906        199 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSP  278 (352)
Q Consensus       199 dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~  278 (352)
                      .+|++.+.++.+++++.++.++|...+.+.+||++.                                            
T Consensus       193 ~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~--------------------------------------------  228 (250)
T 2d4z_A          193 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--------------------------------------------  228 (250)
T ss_dssp             SCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--------------------------------------------
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC--------------------------------------------
Confidence            479999999999999999999999999999999973                                            


Q ss_pred             CeEEEEEeHHHHHHHHHh
Q psy15906        279 GRLVGLILRSQLIILIKH  296 (352)
Q Consensus       279 g~lvGiItRsdLi~~L~~  296 (352)
                      |+|+|||||.||++++..
T Consensus       229 GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          229 GKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             TEEEEEEEHHHHHHHHHC
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            799999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=97.75  E-value=3.5e-05  Score=72.53  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             cccccccc------ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVK------SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM------~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ..+++++|      ++++.++++++++.++.+.|.+++.+.+||+|++                                
T Consensus       258 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~--------------------------------  305 (330)
T 2v8q_E          258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH--------------------------------  305 (330)
T ss_dssp             SSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTT--------------------------------
T ss_pred             cCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCC--------------------------------
Confidence            45788888      4789999999999999999999999999999975                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                                 |+++|+||++|+++++...
T Consensus       306 -----------g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          306 -----------DVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             -----------SBEEEEEEHHHHHHHHHSS
T ss_pred             -----------CcEEEEEeHHHHHHHHHhh
Confidence                       7999999999999988653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.74  E-value=3.9e-06  Score=84.47  Aligned_cols=152  Identities=19%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhCCchhhHHHHHHHHH-------HHHHHhhcCCchhHHHHHHcCCCCCCCCCCCCCcccccccccccCeEE
Q psy15906        135 SLTIILIEATGNISFGLPLMLTLIT-------AKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVIC  207 (352)
Q Consensus       135 s~~vi~~ElTg~~~~~lp~m~~~~~-------a~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~i~V~dIM~~~vv~  207 (352)
                      ..+.+.+|+|+++.+.+|+|.+.+.       +..+++.=..++.+     ++.+ .+........-..++++|..++.+
T Consensus        32 ~~v~l~t~lt~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~-----~~~~-~e~~~~~I~~v~~~~~~m~~~~~~  105 (486)
T 2cu0_A           32 KDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIH-----RNMG-IEEQVEQVKRVKRAERLIVEDVIT  105 (486)
T ss_dssp             TTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-----SSSC-HHHHHHHHHHHHTCC---------
T ss_pred             ceEEEEeeecCCcccccceEEccceeecHHHHHHHHHhcCCceeec-----CCCC-HHHHHHHHHhhcchhhccccCceE
Confidence            3556678999999999999876543       22232210011110     0000 000000001123456789999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcccccCCCCCCcccCCCCCcccCCCCC------------CC
Q psy15906        208 LRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG------------DA  272 (352)
Q Consensus       208 l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~------------~~  272 (352)
                      ++++++++++.+.+.+++++++||+|++ .+   ++.+|..  . ..+.++.++|++++++++...            +.
T Consensus       106 v~~~~tv~ea~~~~~~~~~~~~pVvd~~-~lvGivt~~Dl~--~-~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~  181 (486)
T 2cu0_A          106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIA--A-REGKLVKELMTKEVITVPESIEVEEALKIMIENRI  181 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEECC-EEEEEEEHHHhc--c-CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCC
Confidence            9999999999999999999999999874 44   3444442  2 456789999998888876432            22


Q ss_pred             CcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        273 SRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       273 ~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ..+|   ++|+++|+||++||++.+..
T Consensus       182 ~~lpVVde~g~lvGiiT~~Dil~~~~~  208 (486)
T 2cu0_A          182 DRLPVVDERGKLVGLITMSDLVARKKY  208 (486)
T ss_dssp             -------------------------CC
T ss_pred             CEEEEEecCCeEEEEEEHHHHHHhhhc
Confidence            3334   36899999999999998753

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=96.57  E-value=0.0014  Score=55.49  Aligned_cols=43  Identities=28%  Similarity=0.508  Sum_probs=40.3

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|+++++++++++++.++.++|.+++.+.+||+|++
T Consensus       103 ~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g  145 (170)
T 4esy_A          103 RKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDG  145 (170)
T ss_dssp             TTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETT
T ss_pred             cccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECC
Confidence            3568999999999999999999999999999999999999976

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=95.74  E-value=0.0078  Score=48.41  Aligned_cols=43  Identities=9%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g  114 (135)
T 2rc3_A           72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG  114 (135)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCC
Confidence            4678999999999999999999999999999999999999943

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=95.65  E-value=0.0078  Score=47.48  Aligned_cols=43  Identities=7%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        63 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~  105 (125)
T 1pbj_A           63 AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD  105 (125)
T ss_dssp             TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEECC
Confidence            4668999999999999999999999999999999999999984

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=95.60  E-value=0.0085  Score=47.14  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=38.8

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      +++++|.+++.++++++++.++.+.|.+++.+.+||+|+++.
T Consensus        63 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~  104 (122)
T 3kpb_A           63 TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRR  104 (122)
T ss_dssp             BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCC
Confidence            799999999999999999999999999999999999998533

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=95.56  E-value=0.012  Score=51.98  Aligned_cols=45  Identities=11%  Similarity=0.078  Sum_probs=40.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..+++++|+++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus       115 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~l  159 (205)
T 3kxr_A          115 HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGEL  159 (205)
T ss_dssp             TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBE
T ss_pred             cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeE
Confidence            568999999999999999999999999999999999999976444

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=95.50  E-value=0.0075  Score=49.15  Aligned_cols=46  Identities=11%  Similarity=0.149  Sum_probs=40.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.++++++++++++.++.+.|.+++.+.+||+|+++.+
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~  128 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKL  128 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBE
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcE
Confidence            3568999999999999999999999999999999999999965333

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=95.46  E-value=0.01  Score=49.45  Aligned_cols=43  Identities=14%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+  ++.++.+++++.++.+.|.+++.+.+||+|++
T Consensus        79 ~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  123 (159)
T 3fv6_A           79 TSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDT  123 (159)
T ss_dssp             TTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             cCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCC
Confidence            46789999998  89999999999999999999999999999987

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=95.45  E-value=0.0089  Score=47.85  Aligned_cols=44  Identities=14%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ..+++++|.+++.++++++++.++.+.|.+++.+.+||+|+++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~  109 (133)
T 2ef7_A           66 ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN  109 (133)
T ss_dssp             TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCe
Confidence            46899999999999999999999999999999999999996533

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=95.43  E-value=0.0073  Score=50.89  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|+++++++++++++.++.+.|.+++.+.+||+|+++.+
T Consensus        96 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~  141 (180)
T 3sl7_A           96 YGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKL  141 (180)
T ss_dssp             TTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBE
T ss_pred             ccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeE
Confidence            3568999999999999999999999999999999999999965343

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=95.39  E-value=0.015  Score=47.63  Aligned_cols=43  Identities=12%  Similarity=0.082  Sum_probs=38.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ..+++++| +++.++++++++.++.+.|.+++.+.+||+|+++.
T Consensus        87 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~  129 (148)
T 3lv9_A           87 KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGG  129 (148)
T ss_dssp             CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSS
T ss_pred             CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCC
Confidence            56799999 88999999999999999999999999999997533

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=95.37  E-value=0.0063  Score=48.65  Aligned_cols=44  Identities=16%  Similarity=0.062  Sum_probs=39.8

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ..+++++|.+++.++++++++.++.+.|.+++.+.+||+|+++.
T Consensus        67 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~  110 (128)
T 3gby_A           67 KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGR  110 (128)
T ss_dssp             TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCB
T ss_pred             cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCC
Confidence            36799999999999999999999999999999999999986633

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=95.36  E-value=0.01  Score=49.16  Aligned_cols=43  Identities=9%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g  118 (157)
T 4fry_A           76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGG  118 (157)
T ss_dssp             SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEECC
Confidence            4678999999999999999999999999999999999999954

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=95.36  E-value=0.016  Score=48.40  Aligned_cols=43  Identities=12%  Similarity=0.088  Sum_probs=40.2

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+.+.+.+||+|++
T Consensus        76 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g  118 (160)
T 2o16_A           76 FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD  118 (160)
T ss_dssp             CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETT
T ss_pred             cccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECC
Confidence            4678999999999999999999999999999999999999984

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=95.30  E-value=0.01  Score=47.48  Aligned_cols=43  Identities=9%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g  114 (133)
T 1y5h_A           72 NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH  114 (133)
T ss_dssp             TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            3568999999999999999999999999999999999999974

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=95.29  E-value=0.013  Score=51.74  Aligned_cols=45  Identities=13%  Similarity=0.117  Sum_probs=40.3

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      +.+++++|+++++++++++++.++.+.|.+++.+.+||+|+++.+
T Consensus        71 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l  115 (213)
T 1vr9_A           71 DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL  115 (213)
T ss_dssp             TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE
T ss_pred             CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEE
Confidence            447999999999999999999999999999999999999975344

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=95.29  E-value=0.013  Score=49.16  Aligned_cols=45  Identities=7%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||+|++ .+
T Consensus        91 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g-~~  135 (165)
T 3fhm_A           91 LQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RL  135 (165)
T ss_dssp             GTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETT-EE
T ss_pred             ccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECC-EE
Confidence            3578999999999999999999999999999999999999984 44

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=95.21  E-value=0.02  Score=48.44  Aligned_cols=44  Identities=7%  Similarity=-0.062  Sum_probs=39.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..+++++| +++.++++++++.++.+.|.+++.+.+||+|+++.+
T Consensus       106 ~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~l  149 (172)
T 3lhh_A          106 RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDL  149 (172)
T ss_dssp             CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCE
Confidence            56899999 899999999999999999999999999999975333

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=95.17  E-value=0.012  Score=47.37  Aligned_cols=43  Identities=21%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCC-----CCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATS-----HNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~-----~~~fPVVd~~  235 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++     .+.+||+|++
T Consensus        71 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~  118 (138)
T 2p9m_A           71 LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN  118 (138)
T ss_dssp             SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTT
T ss_pred             CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCC
Confidence            456899999999999999999999999999999     9999999965

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=95.13  E-value=0.02  Score=48.83  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.+++.++++++++.++++.|.+++.+.+||+|+++.+
T Consensus        73 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~  118 (184)
T 1pvm_A           73 DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV  118 (184)
T ss_dssp             GGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred             ccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence            4668999999999999999999999999999999999999985343

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=95.11  E-value=0.013  Score=48.64  Aligned_cols=42  Identities=10%  Similarity=0.145  Sum_probs=38.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|.+ ++++++++++.++.+.|.+.+.+.+||+|++
T Consensus        94 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  135 (157)
T 1o50_A           94 IAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK  135 (157)
T ss_dssp             SSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             cCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCC
Confidence            46789999999 9999999999999999999999999999955

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=94.87  E-value=0.029  Score=47.40  Aligned_cols=44  Identities=7%  Similarity=0.144  Sum_probs=40.3

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ....+++++|.+++.++++++++.++.+.|.+++.+.+||+|++
T Consensus       105 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g  148 (185)
T 2j9l_A          105 PPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG  148 (185)
T ss_dssp             CCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             ccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECC
Confidence            34678999999999999999999999999999999999999954

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=94.79  E-value=0.025  Score=45.75  Aligned_cols=45  Identities=4%  Similarity=0.008  Sum_probs=39.2

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|++ +.++++++++.++++.|.+++.+.+||+|+++.+
T Consensus        68 ~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~l  112 (136)
T 3lfr_A           68 DSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGV  112 (136)
T ss_dssp             GGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCE
T ss_pred             CCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence            45689999976 8899999999999999999999999999876343

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=94.69  E-value=0.027  Score=44.85  Aligned_cols=44  Identities=7%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ...+++++|++ +.++++++++.++.+.|.+++.+.+||+|+++.
T Consensus        67 ~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  110 (127)
T 3nqr_A           67 EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  110 (127)
T ss_dssp             CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence            35679999965 678999999999999999999999999997533

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=94.68  E-value=0.017  Score=48.39  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+|+++|++++.++++++++.++.+.|.++  +.+||||+++.+
T Consensus        84 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~--~~lpVVd~~g~l  127 (156)
T 3k6e_A           84 ADTDIVHMTKTDVAVVSPDFTITEVLHKLVDE--SFLPVVDAEGIF  127 (156)
T ss_dssp             TTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTS--SEEEEECTTSBE
T ss_pred             cccCHHHhhcCCceecccccHHHHHHHHHHHc--CCeEEEecCCEE
Confidence            46789999999999999999999999999764  459999987443

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=94.66  E-value=0.027  Score=46.01  Aligned_cols=43  Identities=7%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.  +||||+++.
T Consensus        85 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~  127 (150)
T 3lqn_A           85 EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGY  127 (150)
T ss_dssp             GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCB
T ss_pred             hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCc
Confidence            5678999999999999999999999999998765  999996533

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=94.55  E-value=0.038  Score=44.12  Aligned_cols=43  Identities=7%  Similarity=0.151  Sum_probs=37.1

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ..+++++|++ +.++++++++.++++.|.+++.+.+||+|+++.
T Consensus        68 ~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~  110 (129)
T 3jtf_A           68 ALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGG  110 (129)
T ss_dssp             TSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CC
T ss_pred             CcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence            5678999965 789999999999999999999999999997533

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=94.47  E-value=0.022  Score=45.57  Aligned_cols=43  Identities=12%  Similarity=0.052  Sum_probs=37.9

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ..+++++|+ ++.++++++++.++.+.|.+++.+..||+|+++.
T Consensus        71 ~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  113 (130)
T 3i8n_A           71 QKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGT  113 (130)
T ss_dssp             TSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred             cCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            567999994 5789999999999999999999999999987533

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=94.29  E-value=0.036  Score=45.58  Aligned_cols=44  Identities=7%  Similarity=0.070  Sum_probs=38.4

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.  +||||+++.+
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~  124 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYF  124 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSE
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeE
Confidence            4678999999999999999999999999998876  9999975343

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=94.08  E-value=0.04  Score=45.71  Aligned_cols=42  Identities=2%  Similarity=0.093  Sum_probs=37.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|++ +.++++++++.++.+.|.+++.+.+||+|++
T Consensus       101 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~  142 (156)
T 3oi8_A          101 EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEY  142 (156)
T ss_dssp             GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCC
Confidence            35689999975 7899999999999999999999999999876

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=94.00  E-value=0.033  Score=51.17  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus       197 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l  242 (278)
T 2yvy_A          197 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRL  242 (278)
T ss_dssp             TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred             CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeE
Confidence            3568999999999999999999999999999999999999976443

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=93.53  E-value=0.06  Score=43.11  Aligned_cols=44  Identities=9%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+ |+|+++.
T Consensus        70 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~  113 (138)
T 2yzi_A           70 YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGK  113 (138)
T ss_dssp             TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTE
T ss_pred             ccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCC
Confidence            4568999999999999999999999999999999999 9996533

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=93.25  E-value=0.044  Score=50.70  Aligned_cols=46  Identities=9%  Similarity=0.158  Sum_probs=41.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus       199 ~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  244 (286)
T 2oux_A          199 DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL  244 (286)
T ss_dssp             TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred             CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence            3568999999999999999999999999999999999999976443

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=93.13  E-value=0.056  Score=53.89  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+++++|++++++++++++++++.+.|.+++.+.+||||+++.+
T Consensus       217 ~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~l  262 (473)
T 2zy9_A          217 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRL  262 (473)
T ss_dssp             TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred             CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEE
Confidence            3568999999999999999999999999999999999999976444

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=93.06  E-value=0.046  Score=45.23  Aligned_cols=44  Identities=11%  Similarity=0.030  Sum_probs=37.9

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.+++.++.+++++.++.+.|.+.+.  +||+|+++.+
T Consensus        84 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~  127 (159)
T 1yav_A           84 DQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVF  127 (159)
T ss_dssp             TTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBE
T ss_pred             ccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeE
Confidence            4678999999999999999999999999988765  9999965333

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=90.69  E-value=0.046  Score=54.92  Aligned_cols=52  Identities=10%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             cccccccccccC--eEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCc
Q psy15906        193 SNITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDG  244 (352)
Q Consensus       193 ~~i~V~dIM~~~--vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~  244 (352)
                      ...+|+++|+++  ++++++++++.+++++|.+++.+.+||||+++.+   +|.+|.
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Di  215 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY  215 (503)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHH
Confidence            356899999987  9999999999999999999999999999976444   344444

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=90.61  E-value=0.048  Score=55.04  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+|+++|++++++++...+++++.++|.+++...+||||++.++
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~L  243 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHL  243 (556)
T ss_dssp             ----------------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcE
Confidence            3568999999999999999999999999999999999999987544

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=90.27  E-value=0.16  Score=51.18  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             ccccccccccc-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSH-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+++++|++ +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       173 ~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l  219 (511)
T 3usb_A          173 YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL  219 (511)
T ss_dssp             SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred             CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCE
Confidence            46789999998 99999999999999999999999999999976444

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=89.53  E-value=0.28  Score=41.53  Aligned_cols=42  Identities=12%  Similarity=0.074  Sum_probs=35.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+++  |.+++.++++++++.++++.|.+++.+..||+|+++.+
T Consensus       101 ~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~l  142 (173)
T 3ocm_A          101 VRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAI  142 (173)
T ss_dssp             CCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCE
T ss_pred             chhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCE
Confidence            4566  55778899999999999999999999999999875343

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=88.74  E-value=0.34  Score=48.13  Aligned_cols=45  Identities=11%  Similarity=0.064  Sum_probs=40.4

Q ss_pred             ccccccccccc-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        193 SNITARIVKSH-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       193 ~~i~V~dIM~~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      .+.+++++|++ +++++++++++.++.+.|.+++.+..||||++..
T Consensus       150 ~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~  195 (491)
T 1zfj_A          150 YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR  195 (491)
T ss_dssp             SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred             CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            35689999998 8999999999999999999999999999997643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=87.14  E-value=0.12  Score=51.85  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=0.0

Q ss_pred             cccccccccc-c-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKS-H-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~-~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|+ + +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~l  192 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYL  192 (490)
T ss_dssp             ------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence            4568999999 5 69999999999999999999999999999976444

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=87.12  E-value=0.12  Score=51.55  Aligned_cols=45  Identities=11%  Similarity=0.174  Sum_probs=0.0

Q ss_pred             cccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        194 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       194 ~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ..+++++|++  +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  200 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKL  200 (494)
T ss_dssp             -----------------------------------------------
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence            5689999998  99999999999999999999999999999976443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=85.02  E-value=0.15  Score=51.11  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=32.8

Q ss_pred             ccccccccccc--CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~--~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|++  +++++++++++.++.++|.+++.+.+||||+++.+
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  218 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDEL  218 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeE
Confidence            35689999998  99999999999999999999999999999976444

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=84.83  E-value=0.2  Score=50.21  Aligned_cols=52  Identities=10%  Similarity=0.029  Sum_probs=35.5

Q ss_pred             cccccccccc-c-CeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCc
Q psy15906        193 SNITARIVKS-H-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDG  244 (352)
Q Consensus       193 ~~i~V~dIM~-~-~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~  244 (352)
                      .+.+++|+|+ + +++++++++++.++.++|.+++.+.+||||+++.+   +|.+|.
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DI  203 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDF  203 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC--
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHH
Confidence            4568999999 4 58999999999999999999999999999987444   344444

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=84.14  E-value=0.2  Score=49.95  Aligned_cols=43  Identities=14%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEP  236 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~  236 (352)
                      ..+++++|+++++++++++++.++.+.|.+++.+.+||||++.
T Consensus       149 ~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g  191 (486)
T 2cu0_A          149 GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG  191 (486)
T ss_dssp             -------------------------------------------
T ss_pred             CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCC
Confidence            5689999999999999999999999999999999999999753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=83.04  E-value=0.9  Score=45.58  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=34.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  234 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~  234 (352)
                      ..+|+++|+++++++++++++.++.++|.+  ++..||||+
T Consensus       450 ~~~V~~im~~~~~~v~~~~~l~~a~~~m~~--~~~~pVVd~  488 (527)
T 3pc3_A          450 SDPAIKALNKRVIRLNESEILGKLARVLEV--DPSVLILGK  488 (527)
T ss_dssp             TSBGGGGEETTCCEEETTSBHHHHHHHHTT--CSEEEEEEE
T ss_pred             CCcHHHHhcCCCeEECCCCcHHHHHHHHhh--CCEEEEEeC
Confidence            568999999999999999999999999965  445799998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1otsa_	444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	5e-28

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 5e-28
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 53  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI 112
           G F +  L    V   + ++  +     GG+F P L  G   G  F +    +FP+   +
Sbjct: 310 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQ-YHL 368

Query: 113 DPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGL 171
           + G +A+ G  A L   +R  ++  I+++E T N    LP+++T + A  +  F   + L
Sbjct: 369 EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPL 428

Query: 172 YDIHIQ 177
           Y   + 
Sbjct: 429 YSAILA 434

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	99.94
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.19
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.17
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.16
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.16
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.14
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.11
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.11
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.1
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.05
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.04
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.0
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.97
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.96
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.93
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.93
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.92
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.91
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.88
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.73
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.61
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	98.56
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.45
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.42
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.4
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.38
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.26
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.24
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.24
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.21
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.17
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.16
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.16
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.1
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.06
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.0
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	96.87
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	96.44
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	96.43
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	96.34
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	96.23
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	96.11
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	96.1
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	96.09
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	96.09
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	95.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	95.7
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	95.7
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	95.5
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	95.37
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	93.43
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	93.41
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	91.25
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	89.77

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.4e-26  Score=229.43  Aligned_cols=139  Identities=22%  Similarity=0.391  Sum_probs=129.4

Q ss_pred             hccCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChh
Q psy15906         36 WLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  115 (352)
Q Consensus        36 ~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~  115 (352)
                      .+|+|++.++.++++   .+++..++.+++.|+++|++|+|+|.|||+|+|++++||++|+++|.+++.++|... .+|+
T Consensus       296 ~~g~G~~~~~~~~~~---~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~~~~-~~~~  371 (444)
T d1otsa_         296 TSGGGFNLIPIATAG---NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAG  371 (444)
T ss_dssp             GSSCSTTHHHHHHHT---CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGT-CCHH
T ss_pred             cCCCchHHHHHHhcC---CcchHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhCCccc-CCHH
Confidence            348999999999987   356778888999999999999999999999999999999999999999998887653 7899


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-CchhHHHHHH
Q psy15906        116 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQL  178 (352)
Q Consensus       116 ~~alvG~aa~l~g~~r~pls~~vi~~ElTg~~~~~lp~m~~~~~a~~v~~~~~-~~iy~~~l~~  178 (352)
                      .|+++||||+++|++|+|+|++++++|+||++++++|+|+++++|+++++.++ +|+||.++++
T Consensus       372 ~~alvGmaa~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~  435 (444)
T d1otsa_         372 TFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR  435 (444)
T ss_dssp             HHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996 8999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=3e-11  Score=97.15  Aligned_cols=103  Identities=8%  Similarity=-0.034  Sum_probs=83.7

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCCCC----
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK----  269 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~----  269 (352)
                      ++|+++|++++.+++++++++++.+.|.+.+++.+||+|+++.. +..+.....+...+.++.++|++++.+++.+    
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNIT   80 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBCTTCCEETTSBHH
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccccccccccCccEEECCCCCHH
Confidence            57999999999999999999999999999999999999876444 3333333355566789999999999999855    


Q ss_pred             --------CCCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 --------GDASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 --------~~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                              ++...+|   ++|+++|+||++|+++++.+.
T Consensus        81 ~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          81 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             HHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             HHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence                    3344444   589999999999999998754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.17  E-value=5.6e-12  Score=102.30  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCcc--ccCCcc---cccCCCCCCcccCCCCCcccCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTK--HSSDGA---EQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~--~~~d~~---~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      +..+|+|+|+++++++++++++.++.++|.+++++++||+|+++.++  +..|..   ..+...++++.++|.+++.+++
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLITIR   81 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCCCEE
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhhhccccc
Confidence            46789999999999999999999999999999999999999873323  223322   1123457789999999999887


Q ss_pred             CC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        268 HK------------GDASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       268 ~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      ..            ++...+|   ++|+++|+||++||++++.+
T Consensus        82 ~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          82 EDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            44            3344444   57899999999999999865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=2e-11  Score=101.36  Aligned_cols=103  Identities=15%  Similarity=0.062  Sum_probs=82.4

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCC-----CCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATS-----HNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~-----~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +|+++|+++++++++++|++++.+.|++++     ...+||||+++.+ +..+...+.....+.++.++|++++.++++.
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~~~v~~im~~~~~~v~~~   81 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVVYVRTD   81 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTTCBSTTTSBSSCCCEESS
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccccchHHhcccCCccCCCC
Confidence            689999999999999999999999998764     5678999987554 3333333455667889999999999999855


Q ss_pred             ------------CCCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        270 ------------GDASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       270 ------------~~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                                  ++...+|   ++|+++|+||++|++++++...
T Consensus        82 ~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2          82 TDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             CCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHh
Confidence                        4455555   4799999999999999987543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=1.1e-11  Score=100.88  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=80.8

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCC-----CCeEEEEeCCCCccc-cCCcccccCCCCCCcccCCCCCcccCCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATS-----HNGFPIVDVEPMTKH-SSDGAEQSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~-----~~~fPVVd~~~~~~~-~~d~~~~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +|+.+|+++++++++++|++++++.|++++     .+.+||||+++.... ..-........+.++.++|++++++++..
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~~~~v~~im~~~~~~v~~~   81 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDTLIADILNERVISVHVG   81 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTTSBHHHHSBSCCCCEETT
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccccEEhhhhccCCCccCCCC
Confidence            689999999999999999999999998763     578999998855421 11112244566789999999999999855


Q ss_pred             C------------CCCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        270 G------------DASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       270 ~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      .            +...+|   ++|+++|+||++|++.++++.
T Consensus        82 ~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          82 DDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            3            355555   479999999999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=8.5e-12  Score=100.65  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-cccCCcccccCCCCCCcccCCCCCcccCCCC----
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK----  269 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~----  269 (352)
                      ++|+|+|++++++++++++++++.+.|.+++++++||+|+++.. +..+.........+..+.++|.+++++++..    
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLK   80 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------CCCBSCCCEEETTSBHH
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcccchhhccccceeecchhhHHH
Confidence            57999999999999999999999999999999999999887555 3333333345566778999999999988744    


Q ss_pred             --------CCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        270 --------GDASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       270 --------~~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                              ++...+|   ++|+++|+|||+|+++++.
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred             HHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence                    2344444   5799999999999997653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=4.1e-11  Score=99.95  Aligned_cols=102  Identities=14%  Similarity=0.094  Sum_probs=79.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc-----------------------
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE-----------------------  246 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~-----------------------  246 (352)
                      ++++++++|+++++++.++++++++.++|.+++++++||+|+++.+   ++..|...                       
T Consensus         2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            5789999999999999999999999999999999999999887544   23333210                       


Q ss_pred             -----------ccCCCCCCcccCCCCCcccCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHH
Q psy15906        247 -----------QSSAGSTDSHKGDTSHKRDSSHKG------------DASRKD---SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       247 -----------~~~~~~~~~~~~m~~~~~~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L  294 (352)
                                 .....+.++.++|++++.+++...            +..++|   ++|+++|+|||+||+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                       011334578899999999988553            455555   579999999999999875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=3.9e-11  Score=97.94  Aligned_cols=105  Identities=10%  Similarity=0.115  Sum_probs=82.5

Q ss_pred             ccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc--c--cCCCCCCcccCCCCCcccC
Q psy15906        194 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE--Q--SSAGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       194 ~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~--~--~~~~~~~~~~~m~~~~~~~  266 (352)
                      ..+|+|+|+++++++++++++.++.+.|.+++++.+||+|+++.+   ++..|...  .  ....+.++.++|++++.++
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~~v   83 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITA   83 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCEE
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeeccccccccc
Confidence            457999999999999999999999999999999999999987554   23333211  1  1234678999999999998


Q ss_pred             CCCC------------CCCcCC--CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        267 SHKG------------DASRKD--SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       267 ~~~~------------~~~~l~--~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      +...            +...+|  ++|+++|+||++|+++++.++.
T Consensus        84 ~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          84 NVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             CcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHHH
Confidence            8553            344444  4799999999999999987653

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.10  E-value=2.1e-11  Score=100.30  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCccc------------ccCCCCCCcccCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGAE------------QSSAGSTDSHKGD  259 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~~------------~~~~~~~~~~~~m  259 (352)
                      ++|+|+|+++++++++++++.++.+.|.+++++++||+|+++.+ +  +.+|...            ..-..+.++.++|
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im   81 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM   81 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHhh
Confidence            58999999999999999999999999999999999999977444 2  2222210            0112356889999


Q ss_pred             CCCcccCCCC------------CCCCcCC--CCCeEEEEEeHHHHHHHHHhh
Q psy15906        260 TSHKRDSSHK------------GDASRKD--SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       260 ~~~~~~~~~~------------~~~~~l~--~~g~lvGiItRsdLi~~L~~~  297 (352)
                      ++++.+++..            ++...+|  ++|+++|+|||+|+++++.+.
T Consensus        82 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          82 HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            9999999854            3355555  479999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.05  E-value=4.1e-10  Score=93.52  Aligned_cols=76  Identities=25%  Similarity=0.399  Sum_probs=65.1

Q ss_pred             CCCCCCCCcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcc
Q psy15906        185 AWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKR  264 (352)
Q Consensus       185 ~~~~~~~l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~  264 (352)
                      .|...+ ..+++|+|+|+++++++++++++++++++|.+++++++||+|+++                            
T Consensus         2 ~~~~~~-~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~----------------------------   52 (160)
T d2d4za3           2 SWSSAN-KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD----------------------------   52 (160)
T ss_dssp             CCCCCC-CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT----------------------------
T ss_pred             CCCcCC-ccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccc----------------------------
Confidence            454444 458999999999999999999999999999999999999999751                            


Q ss_pred             cCCCCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccC
Q psy15906        265 DSSHKGDASRKDSPGRLVGLILRSQLIILIKHKIYKEN  302 (352)
Q Consensus       265 ~~~~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~  302 (352)
                                   ++.++|++++.|++.++.++.....
T Consensus        53 -------------~~~lvg~is~~dl~~~l~~~~~~~~   77 (160)
T d2d4za3          53 -------------TNTLLGSIDRTEVEGLLQRRISAYR   77 (160)
T ss_dssp             -------------TCBEEEEEEHHHHHHHHHHHHHTTS
T ss_pred             -------------cccccccchHHHHHHHHhhcccccc
Confidence                         4789999999999999987765443

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=9.8e-12  Score=100.28  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=76.9

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCcc---cccC--CCCCCcccCCCCCcccC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGA---EQSS--AGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~---~~~~--~~~~~~~~~m~~~~~~~  266 (352)
                      .+|+|+|+++++++.+++++.++++.|.+++++++||+|+++.+   ++.+|..   ..++  .....++++|+++++++
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v   80 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYV   80 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCE
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccceee
Confidence            37999999999999999999999999999999999999876444   2333431   1121  23456778999999998


Q ss_pred             CCCCC------------CCcCC--CCCeEEEEEeHHHHHHHH
Q psy15906        267 SHKGD------------ASRKD--SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       267 ~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L  294 (352)
                      +....            ...+|  ++++++|+|||+|+++.|
T Consensus        81 ~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          81 DANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred             eecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhhC
Confidence            85533            44455  478999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.00  E-value=5.6e-11  Score=95.36  Aligned_cols=99  Identities=9%  Similarity=0.020  Sum_probs=77.0

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCcc--ccCCccc----ccCCCCCCcccCCCCCcccCCCC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTK--HSSDGAE----QSSAGSTDSHKGDTSHKRDSSHK  269 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~--~~~d~~~----~~~~~~~~~~~~m~~~~~~~~~~  269 (352)
                      +|+|+|++++.++++++++.++.+.|.+++++.+||+++++.++  +.+|.-.    -....+.++.++|++++.+++..
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v~~~   80 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPR   80 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEECTT
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeecccccccccch
Confidence            58999999999999999999999999999999999998763333  2233321    11234568999999999999855


Q ss_pred             CC------------CCcCC--CCCeEEEEEeHHHHHHHH
Q psy15906        270 GD------------ASRKD--SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       270 ~~------------~~~l~--~~g~lvGiItRsdLi~~L  294 (352)
                      ..            ...+|  ++|+++|+||++|+++|.
T Consensus        81 ~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          81 ATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             SCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence            33            33444  479999999999999874

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.97  E-value=6.5e-11  Score=97.01  Aligned_cols=104  Identities=9%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc---cccCCccc----------ccCCCCCCcccCCCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT---KHSSDGAE----------QSSAGSTDSHKGDTS  261 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~---~~~~d~~~----------~~~~~~~~~~~~m~~  261 (352)
                      ++|+++|+++++++++++++.++.++|.+++++++||+|+++..   .+..|...          .....+.++.++|++
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT   81 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBC
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhCc
Confidence            47999999999999999999999999999999999999987444   12222210          001235678899999


Q ss_pred             CcccCCCCC------------CCCcCC---CCCeEEEEEeHHHHHHHHHhhh
Q psy15906        262 HKRDSSHKG------------DASRKD---SPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       262 ~~~~~~~~~------------~~~~l~---~~g~lvGiItRsdLi~~L~~~~  298 (352)
                      ++++++...            +...+|   ++|+++|+||++|+++++.+..
T Consensus        82 ~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          82 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            999988543            234443   4799999999999999997644

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=1.3e-10  Score=95.89  Aligned_cols=103  Identities=12%  Similarity=0.083  Sum_probs=80.1

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCcc--ccc---CCCCCCcccCCCCCcccC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGA--EQS---SAGSTDSHKGDTSHKRDS  266 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~--~~~---~~~~~~~~~~m~~~~~~~  266 (352)
                      ++|+|+|++++.++++++++.++.+.|.+++++.+||+|+++.. +  +.+|..  ...   ...+.++.++|++++.++
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~v   82 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKV   82 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEE
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccccc
Confidence            68999999999999999999999999999999999999886444 2  333331  111   123457899999999999


Q ss_pred             CCCCC------------CCcCC---CCCeEEEEEeHHHHHHHHHhh
Q psy15906        267 SHKGD------------ASRKD---SPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       267 ~~~~~------------~~~l~---~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +....            ...+|   ++|+++|+||+.||++.+.+.
T Consensus        83 ~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          83 KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             ETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             cchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            85533            33344   478999999999999987653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.93  E-value=4.2e-10  Score=90.89  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             cccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeC--CCCc---cccCCcccccCCCCCCcccCCCCCcccCCCC------
Q psy15906        201 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV--EPMT---KHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK------  269 (352)
Q Consensus       201 M~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~--~~~~---~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~------  269 (352)
                      |.++++++++++++.++.++|.+++++++||||+  ++.+   ++.+|...............|+.++++++..      
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a   82 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETA   82 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHH
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHH
Confidence            5677889999999999999999999999999986  3233   2333332222222233444556666766633      


Q ss_pred             ------CCCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        270 ------GDASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       270 ------~~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                            .+...+|   ++|+++|+|||+|+++++.+
T Consensus        83 ~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          83 ERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             HHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                  3455555   57899999999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.93  E-value=2.1e-10  Score=92.84  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=76.8

Q ss_pred             ccccccc---cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCcc--ccCCccc---cc--CCCCCCcccCCCCCccc
Q psy15906        196 TARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTK--HSSDGAE---QS--SAGSTDSHKGDTSHKRD  265 (352)
Q Consensus       196 ~V~dIM~---~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~--~~~d~~~---~~--~~~~~~~~~~m~~~~~~  265 (352)
                      +|+|+|+   ++++++++++++.++.+.|.+++.+++||+++++.++  |.+|...   ..  ...+.++.++|++++++
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   82 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   82 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeEE
Confidence            7999997   4899999999999999999999999999999763333  3333311   11  12356899999999999


Q ss_pred             CCCCCC------------CCcCC--CCCeEEEEEeHHHHHHHH
Q psy15906        266 SSHKGD------------ASRKD--SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       266 ~~~~~~------------~~~l~--~~g~lvGiItRsdLi~~L  294 (352)
                      ++....            +..+|  ++|+++|+||++|+++++
T Consensus        83 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          83 VDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             eccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence            985533            44455  479999999999999876

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=4.1e-10  Score=91.49  Aligned_cols=103  Identities=10%  Similarity=0.027  Sum_probs=77.9

Q ss_pred             ccccccc--ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc-c--ccCCcc---------cccCCCCCCcccCCC
Q psy15906        195 ITARIVK--SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT-K--HSSDGA---------EQSSAGSTDSHKGDT  260 (352)
Q Consensus       195 i~V~dIM--~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~-~--~~~d~~---------~~~~~~~~~~~~~m~  260 (352)
                      .+|+++|  .++++++++++++++++++|.+++++++||+|+++.+ +  +.+|..         ......+.++.++|+
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            4789999  5689999999999999999999999999999886444 2  222221         112234567888999


Q ss_pred             CCcccCCCCCC----------CCcC---CCCCeEEEEEeHHHHHHHHHhh
Q psy15906        261 SHKRDSSHKGD----------ASRK---DSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       261 ~~~~~~~~~~~----------~~~l---~~~g~lvGiItRsdLi~~L~~~  297 (352)
                      +++.+++....          ...+   .++|+++|+||++|+++++.++
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~~~~~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTTTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhCCEEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            99888874422          1123   3579999999999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.91  E-value=7.8e-11  Score=95.93  Aligned_cols=101  Identities=10%  Similarity=0.101  Sum_probs=76.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCcc--ccCCcc--cc-----c-------CCCCCCcccC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTK--HSSDGA--EQ-----S-------SAGSTDSHKG  258 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~--~~~d~~--~~-----~-------~~~~~~~~~~  258 (352)
                      ++|+|+|.++++++++++++.++.+.|.+.+++.+||+|++ .++  +..|..  ..     .       ...+.++.++
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~~-lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i   79 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK-IEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDY   79 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESSS-EEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGT
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEecc-eeceeeccchhhhhccccccchhhhhccccccCCHHHH
Confidence            57999999999999999999999999999999999999875 332  111110  00     0       0125678999


Q ss_pred             CCCCcccCCCC------------CCCCcCC---CCCeEEEEEeHHHHHHHHHh
Q psy15906        259 DTSHKRDSSHK------------GDASRKD---SPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       259 m~~~~~~~~~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~~  296 (352)
                      |++++.+++..            ++..++|   ++|+++|+||++|+++++++
T Consensus        80 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          80 MTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             SEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             hCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            99999998744            3344554   57899999999999988753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=91.22  Aligned_cols=105  Identities=29%  Similarity=0.390  Sum_probs=70.1

Q ss_pred             cccccccccc----Ce--EEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCC
Q psy15906        194 NITARIVKSH----PV--ICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       194 ~i~V~dIM~~----~v--v~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ...|+|+|.+    ++  +.+.+++|++++.++|.+++++++|||+++                                
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~--------------------------------   49 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR--------------------------------   49 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT--------------------------------
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecC--------------------------------
Confidence            4678999974    22  445678899999999999999999999754                                


Q ss_pred             CCCCCCcCCCCCeEEEEEeHHHHHHHHHhhhcccCCCCCCCCcCHHHHhhhCCCCCCcccccCCccccCCcccccccccC
Q psy15906        268 HKGDASRKDSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT  347 (352)
Q Consensus       268 ~~~~~~~l~~~g~lvGiItRsdLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~dl~p~~n~  347 (352)
                               ++++++|+||++||+.++....+........   +...+.......         ........+++.+|++
T Consensus        50 ---------~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~v~~im~~  108 (169)
T d2j9la1          50 ---------ESQRLVGFVLRRDLIISIENARKKQDGVVST---SIIYFTEHSPPL---------PPYTPPTLKLRNILDL  108 (169)
T ss_dssp             ---------TTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT---CEEECSSSCCCC---------CTTCCCCEECGGGEES
T ss_pred             ---------CCCeEEEEEEhHHHHHHHhcccccccccccc---hhhhhcccchhh---------hhccccccchhhhccC
Confidence                     1489999999999999998765433221111   111111111111         1123445678888888


Q ss_pred             CCCC
Q psy15906        348 SPFS  351 (352)
Q Consensus       348 sp~t  351 (352)
                      .|+|
T Consensus       109 ~~~t  112 (169)
T d2j9la1         109 SPFT  112 (169)
T ss_dssp             SCCE
T ss_pred             CCEE
Confidence            8764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.73  E-value=1.3e-09  Score=88.06  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=71.1

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC--CCc-ccc--CCcc--cccCCCCCCcccCCCCCcccCC
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE--PMT-KHS--SDGA--EQSSAGSTDSHKGDTSHKRDSS  267 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~--~~~-~~~--~d~~--~~~~~~~~~~~~~m~~~~~~~~  267 (352)
                      ++|+|+|+++++++++++++.|+.+.|.+++.++.||++.+  +.+ +..  .|..  ..+..........|..++.++.
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~   80 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPITVL   80 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCEEE
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccceeEe
Confidence            57999999999999999999999999999999999999543  122 211  1221  1122233344555666666665


Q ss_pred             CC------------CCCCcCC---CCCeEEEEEeHHHHHHHHH
Q psy15906        268 HK------------GDASRKD---SPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       268 ~~------------~~~~~l~---~~g~lvGiItRsdLi~~L~  295 (352)
                      ..            ++...+|   ++|+++|+||++||++++.
T Consensus        81 ~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          81 DTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             eecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            33            3355554   5789999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.61  E-value=2.6e-09  Score=85.49  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=37.5

Q ss_pred             cccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC---CCc---cccCCccc-ccCCCCCCcccCCCC--CcccCCC---
Q psy15906        201 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE---PMT---KHSSDGAE-QSSAGSTDSHKGDTS--HKRDSSH---  268 (352)
Q Consensus       201 M~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~---~~~---~~~~d~~~-~~~~~~~~~~~~m~~--~~~~~~~---  268 (352)
                      |.++++++++++++.|+.++|.+++++++||+|++   +.+   +|.+|... .....+....++|+.  +.++++.   
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGIT   81 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCC
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCC
Confidence            56677899999999999999999999999999852   122   34455432 222334566666654  3444442   


Q ss_pred             ---------CCCCCcCC---CCCeEEEEEeHHHHHHHH
Q psy15906        269 ---------KGDASRKD---SPGRLVGLILRSQLIILI  294 (352)
Q Consensus       269 ---------~~~~~~l~---~~g~lvGiItRsdLi~~L  294 (352)
                               ++++..+|   ++|+++|+|||+|++++.
T Consensus        82 ~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          82 LKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence                     24456666   579999999999999863

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.3e-07  Score=91.95  Aligned_cols=123  Identities=16%  Similarity=0.101  Sum_probs=95.3

Q ss_pred             cCcHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCChhHH
Q psy15906         38 QVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  117 (352)
Q Consensus        38 ~~~~~~i~~l~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~~~~  117 (352)
                      |+|-..+...+++..+...+..+    ..|++.+.++.++|.+.|-..|+..+||++|..+++..+.    ....+...+
T Consensus        90 GsGipev~~~l~~~~~~~~~r~~----~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~~~~----~~~~~~r~l  161 (444)
T d1otsa_          90 GSGIPEIEGALEDQRPVRWWRVL----PVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL----KGDEARHTL  161 (444)
T ss_dssp             SCSHHHHHHHHTTCSCCCHHHHH----HHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC----CSHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCccHHHH----HHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHHhh----hhHHhhHHH
Confidence            34555666666765544444333    6799999999999999999999999999999999886431    101123578


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhC-Cc----hhhHHHHHHHHHHHHHHhhcC
Q psy15906        118 ALIGAAAQLGGVVRMTISLTIILIEATG-NI----SFGLPLMLTLITAKWIGDFFT  168 (352)
Q Consensus       118 alvG~aa~l~g~~r~pls~~vi~~ElTg-~~----~~~lp~m~~~~~a~~v~~~~~  168 (352)
                      ..+|+||-++++.++|++.+++.+|... .+    ..+.|.++++++++++...+.
T Consensus       162 ~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  217 (444)
T d1otsa_         162 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN  217 (444)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheeecc
Confidence            9999999999999999999999999643 32    337899999999999988763

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.45  E-value=1.1e-07  Score=78.32  Aligned_cols=59  Identities=10%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ....++++|.++++++.+++++.++.++|.+.+.+.+||+| +                                     
T Consensus       101 ~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~-------------------------------------  142 (160)
T d2d4za3         101 VVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-M-------------------------------------  142 (160)
T ss_dssp             BCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-------------------------------------
T ss_pred             ccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-C-------------------------------------
Confidence            34557899999999999999999999999999999999987 3                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHH
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~  295 (352)
                            |+++|+|||+||+++++
T Consensus       143 ------g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         143 ------GKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             ------TEEEEEEEHHHHHHHHH
T ss_pred             ------CEEEEEEEHHHHHHHhC
Confidence                  79999999999999985

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.9e-07  Score=77.19  Aligned_cols=62  Identities=15%  Similarity=0.305  Sum_probs=56.2

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ....+++++|++++.++.+++++.++.++|.+.+.+.+||+|+                                     
T Consensus        97 ~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~-------------------------------------  139 (169)
T d2j9la1          97 PPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-------------------------------------  139 (169)
T ss_dssp             CCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET-------------------------------------
T ss_pred             ccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC-------------------------------------
Confidence            4567899999999999999999999999999999999999863                                     


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                             |+++|+|||+|+++++.+.
T Consensus       140 -------g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         140 -------GRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             -------TEEEEEEEHHHHHHHHHHH
T ss_pred             -------CEEEEEEEHHHHHHHHHHH
Confidence                   6899999999999999763

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=4e-07  Score=75.19  Aligned_cols=64  Identities=11%  Similarity=0.149  Sum_probs=56.4

Q ss_pred             cccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        193 SNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       193 ~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      +..+++|+|.  .++++++.++++.++.+.|.+++++++||+|++                                   
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~-----------------------------------   55 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-----------------------------------   55 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT-----------------------------------
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC-----------------------------------
Confidence            3568999995  478999999999999999999999999999875                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        271 DASRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                             +++++|+|++.|++..+.+..
T Consensus        56 -------~~~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2          56 -------KQSFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             -------TTEEEEEEEHHHHHHHHHHHH
T ss_pred             -------CCcEEEEEEHHHHHHHHHhcc
Confidence                   379999999999999987644

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=3.6e-07  Score=74.29  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      .+.++|+++++++++++++.++.+.|.+++++++||+|++                                        
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~----------------------------------------   44 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----------------------------------------   44 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----------------------------------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC----------------------------------------
Confidence            5678899999999999999999999999999999999975                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906        276 DSPGRLVGLILRSQLIILIKHKIY  299 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~~~~~  299 (352)
                         ++++|+||+.|+++.+....+
T Consensus        45 ---~~~vGiis~~Dl~~~~~~~~~   65 (145)
T d1o50a3          45 ---NKLVGMIPVMHLLKVSGFHFF   65 (145)
T ss_dssp             ---TEEEEEEEHHHHHHHHHHHHH
T ss_pred             ---cceeeeeccchhhhhhhcccc
Confidence               799999999999998876554

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=6.1e-07  Score=72.87  Aligned_cols=62  Identities=11%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  271 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~  271 (352)
                      ....+++++|.+ ++++++++++.++.+.|.+.+.+.+||||++                                    
T Consensus        81 ~~~~~~~~~~~~-~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~------------------------------------  123 (145)
T d1o50a3          81 LIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK------------------------------------  123 (145)
T ss_dssp             CSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT------------------------------------
T ss_pred             ccccCHHHHcCC-CEEEcCCCCHHHHHHHHHHcCceEEEEEeCC------------------------------------
Confidence            445678888864 5689999999999999999999999999875                                    


Q ss_pred             CCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        272 ASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       272 ~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                             |+++|+||++|++++|.+.
T Consensus       124 -------g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         124 -------GEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             -------SCEEEEEEHHHHHHHHHHS
T ss_pred             -------CeEEEEEEHHHHHHHHHhc
Confidence                   8999999999999999764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=8.8e-07  Score=72.07  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      .++.+.|.+++.++.+++++.++.+.|.+++.+.+||||++                                       
T Consensus        84 ~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------------------------  124 (145)
T d2v8qe1          84 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH---------------------------------------  124 (145)
T ss_dssp             GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---------------------------------------
T ss_pred             cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccC---------------------------------------
Confidence            45667788889999999999999999999999999999875                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHH
Q psy15906        275 KDSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~~L~  295 (352)
                          |+++|+||++||++++-
T Consensus       125 ----g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1         125 ----DVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ----SBEEEEEEHHHHHHHHH
T ss_pred             ----CEEEEEEEHHHHHHHHH
Confidence                79999999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=5.1e-07  Score=74.52  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      ..+.++|.++++++++++++.++.+.|.+++.+..||+|++                                       
T Consensus        96 ~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~---------------------------------------  136 (159)
T d2v8qe2          96 EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE---------------------------------------  136 (159)
T ss_dssp             HHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT---------------------------------------
T ss_pred             ceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECC---------------------------------------
Confidence            45678999999999999999999999999999999999865                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        275 KDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                         +|+++|+||++||++.|..++
T Consensus       137 ---~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2         137 ---SGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             ---TCCEEEEECHHHHHHHHHHHS
T ss_pred             ---CCeEEEEEeHHHHHHHHHHHc
Confidence               489999999999999997543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.21  E-value=6e-07  Score=75.56  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             cccccccccc--cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        193 SNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       193 ~~i~V~dIM~--~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      ...++.|+|.  .+++++++++++.++.+.|.+++++++||+|++                                   
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~-----------------------------------   62 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE-----------------------------------   62 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT-----------------------------------
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC-----------------------------------
Confidence            4668999996  578999999999999999999999999999975                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHHHHHh
Q psy15906        271 DASRKDSPGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~~L~~  296 (352)
                             +++++|+||.+|+++.+.+
T Consensus        63 -------~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          63 -------ANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             -------TTEEEEEECHHHHHHHHHH
T ss_pred             -------CCeeEEEEeechHHHHHHh
Confidence                   3799999999999998864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.17  E-value=1.6e-06  Score=71.35  Aligned_cols=56  Identities=20%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             ccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCC
Q psy15906        198 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDS  277 (352)
Q Consensus       198 ~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~  277 (352)
                      ...|..++.++++++++.++.+.|.+++.+.+||||++                                          
T Consensus        79 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~------------------------------------------  116 (153)
T d2ooxe2          79 RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN------------------------------------------  116 (153)
T ss_dssp             SCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTT------------------------------------------
T ss_pred             eecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCC------------------------------------------
Confidence            33445667889999999999999999999999999976                                          


Q ss_pred             CCeEEEEEeHHHHHHHHHh
Q psy15906        278 PGRLVGLILRSQLIILIKH  296 (352)
Q Consensus       278 ~g~lvGiItRsdLi~~L~~  296 (352)
                       |+++|+|||+|+++.+..
T Consensus       117 -~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2         117 -LKLEGILSLADILNYIIY  134 (153)
T ss_dssp             -CBEEEEEEHHHHHHHHHS
T ss_pred             -CEEEEEEEHHHHHHHHHc
Confidence             899999999999998753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.16  E-value=1.4e-06  Score=73.24  Aligned_cols=67  Identities=10%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             cccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCc
Q psy15906        195 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  274 (352)
Q Consensus       195 i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~  274 (352)
                      ..+.++|.++++++.+++++.++.+.|.+++.+.+||||+++.                                     
T Consensus       107 ~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~-------------------------------------  149 (179)
T d2ooxe1         107 ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE-------------------------------------  149 (179)
T ss_dssp             HHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTT-------------------------------------
T ss_pred             ceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCC-------------------------------------
Confidence            3456678999999999999999999999999999999997611                                     


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhc
Q psy15906        275 KDSPGRLVGLILRSQLIILIKHKIY  299 (352)
Q Consensus       275 l~~~g~lvGiItRsdLi~~L~~~~~  299 (352)
                       +.+++++|+||++||++.|..+..
T Consensus       150 -~~~~~vvgiiT~~dIlk~l~~~~~  173 (179)
T d2ooxe1         150 -TGSEMIVSVLTQYRILKFISMNCK  173 (179)
T ss_dssp             -TCCEEEEEEEEHHHHHHHHHTTCG
T ss_pred             -cCCCcEEEEEeHHHHHHHHHHhhh
Confidence             124689999999999999976553

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=1.3e-06  Score=70.70  Aligned_cols=57  Identities=23%  Similarity=0.327  Sum_probs=51.1

Q ss_pred             cccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcCCCC
Q psy15906        199 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKDSP  278 (352)
Q Consensus       199 dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l~~~  278 (352)
                      .+|.++++++.+++++.++++.|.+++++.+||+|++                                           
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-------------------------------------------   49 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-------------------------------------------   49 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------------------------------------
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------------------------------------
Confidence            4577899999999999999999999999999999875                                           


Q ss_pred             CeEEEEEeHHHHHHHHHhhh
Q psy15906        279 GRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       279 g~lvGiItRsdLi~~L~~~~  298 (352)
                      |+++|+||++|+++.+..+.
T Consensus        50 ~~~vG~it~~Di~~~~~~~~   69 (140)
T d2nyca1          50 GYLINVYEAYDVLGLIKGGI   69 (140)
T ss_dssp             CBEEEEEEHHHHHHHHHTC-
T ss_pred             CeEcceehhhHHHHHHhhcc
Confidence            78999999999999886543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=1.8e-06  Score=69.94  Aligned_cols=57  Identities=25%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCCCcC
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  275 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~l  275 (352)
                      .....|..++.++++++++.++.+.|.+.+.+.+||||++                                        
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~----------------------------------------  121 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV----------------------------------------  121 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT----------------------------------------
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCC----------------------------------------
Confidence            4455666778899999999999999999999999999976                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHH
Q psy15906        276 DSPGRLVGLILRSQLIILIK  295 (352)
Q Consensus       276 ~~~g~lvGiItRsdLi~~L~  295 (352)
                         |+++|+||++|+++++-
T Consensus       122 ---~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         122 ---GRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---SBEEEEEEHHHHHHHHH
T ss_pred             ---CeEEEEEEHHHHHHHHh
Confidence               89999999999999874

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.06  E-value=3.2e-06  Score=69.45  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             ccccccc---cCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCCCC
Q psy15906        196 TARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  272 (352)
Q Consensus       196 ~V~dIM~---~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  272 (352)
                      ++++++.   ++++++.+++++.++.+.|.+++++++||+|++                                     
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-------------------------------------   44 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-------------------------------------   44 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-------------------------------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-------------------------------------
Confidence            4556653   488999999999999999999999999999875                                     


Q ss_pred             CcCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15906        273 SRKDSPGRLVGLILRSQLIILIKHKI  298 (352)
Q Consensus       273 ~~l~~~g~lvGiItRsdLi~~L~~~~  298 (352)
                            ++++|+|+++|+++.+....
T Consensus        45 ------~~~vG~it~~Dl~~~~~~~~   64 (153)
T d2ooxe2          45 ------GTLLNVYESVDVMHLIQDGD   64 (153)
T ss_dssp             ------GBEEEEEEHHHHHHHHGGGC
T ss_pred             ------ceEEEEEEeeeeeehhcccc
Confidence                  78999999999999887543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=1.5e-06  Score=70.70  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=52.8

Q ss_pred             cccccccc---ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCccccCCcccccCCCCCCcccCCCCCcccCCCCC
Q psy15906        194 NITARIVK---SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  270 (352)
Q Consensus       194 ~i~V~dIM---~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~~~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~  270 (352)
                      ..+++|++   .++++++.+++++.|+++.|.+++++++||+|++                                   
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-----------------------------------   52 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------------------------------   52 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------------------------------
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-----------------------------------
Confidence            44677774   3678999999999999999999999999999875                                   


Q ss_pred             CCCcCCCCCeEEEEEeHHHHHHHHHhh
Q psy15906        271 DASRKDSPGRLVGLILRSQLIILIKHK  297 (352)
Q Consensus       271 ~~~~l~~~g~lvGiItRsdLi~~L~~~  297 (352)
                              |+++|+||++|++..+..+
T Consensus        53 --------~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1          53 --------GRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             --------SBEEEEEEGGGTGGGGGSS
T ss_pred             --------CceEEEEEcchhhhhhhcc
Confidence                    7899999999998877654

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.87  E-value=0.00025  Score=56.05  Aligned_cols=46  Identities=9%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|+++++++++++++.++.++|.+++.+.+||||+++.+
T Consensus        63 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~l  108 (127)
T d2ouxa2          63 DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL  108 (127)
T ss_dssp             TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred             ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEE
Confidence            4578999999999999999999999999999999999999876443

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.44  E-value=0.0012  Score=52.80  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|+++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus        67 ~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l  112 (142)
T d1pvma4          67 DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV  112 (142)
T ss_dssp             GGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEE
Confidence            4668999999999999999999999999999999999999987443

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=96.43  E-value=0.0014  Score=52.08  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ....+++++|++++.++++++++.++.+.|.+++.+.+||+|++
T Consensus        72 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  115 (139)
T d2o16a3          72 AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD  115 (139)
T ss_dssp             -CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETT
T ss_pred             ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEECC
Confidence            45678999999999999999999999999999999999999976

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.0013  Score=53.03  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEP  236 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~  236 (352)
                      ..+.+|+++|++++.++.+++++.++.+.|.+++.+.+||+|+++
T Consensus        96 ~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g  140 (156)
T d2yzqa1          96 LPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG  140 (156)
T ss_dssp             -CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT
T ss_pred             ccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCC
Confidence            457789999999999999999999999999999999999999773

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.23  E-value=0.0014  Score=51.55  Aligned_cols=46  Identities=11%  Similarity=0.138  Sum_probs=42.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+++++|+++++++++++++.++.++|.+++.+.+||+|+++++
T Consensus        72 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~l  117 (135)
T d3ddja2          72 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKP  117 (135)
T ss_dssp             HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             ccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEE
Confidence            4678999999999999999999999999999999999999987444

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.11  E-value=0.0021  Score=49.67  Aligned_cols=43  Identities=7%  Similarity=0.136  Sum_probs=40.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+.+++++|++++.++++++++.++.+.|.+++.+.+||++++
T Consensus        62 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~  104 (120)
T d1pbja3          62 AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD  104 (120)
T ss_dssp             TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEECC
Confidence            4678999999999999999999999999999999999998865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0024  Score=51.22  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|++++.++++++++.++.+.|.+++.+.+||||+++.+
T Consensus        63 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~l  108 (144)
T d2yvxa2          63 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRL  108 (144)
T ss_dssp             TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBE
T ss_pred             cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEE
Confidence            4568999999999999999999999999999999999999986444

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.09  E-value=0.0025  Score=49.77  Aligned_cols=43  Identities=9%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ...+++++|++++.++++++++.++.+.|.+.+.+.+||+|++
T Consensus        68 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  110 (127)
T d2rc3a1          68 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG  110 (127)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEECC
Confidence            4678999999999999999999999999999999999999965

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.09  E-value=0.0016  Score=50.60  Aligned_cols=43  Identities=9%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      ....++++|+++++++++++++.++.+.|.+++.+.+||+|++
T Consensus        65 ~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~  107 (123)
T d1y5ha3          65 NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH  107 (123)
T ss_dssp             TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEETT
T ss_pred             ccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEECC
Confidence            4567899999999999999999999999999999999999976

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.77  E-value=0.0034  Score=48.94  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||||+++.
T Consensus        65 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~  109 (127)
T d2ef7a1          65 LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN  109 (127)
T ss_dssp             TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             ccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCe
Confidence            346799999999999999999999999999999999999987633

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.70  E-value=0.0025  Score=50.23  Aligned_cols=46  Identities=9%  Similarity=0.099  Sum_probs=41.4

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      .+.+++++|+++++++++++++.++.+.|.+++.+.+||||+++.+
T Consensus        71 ~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~  116 (141)
T d3ddja1          71 YGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTI  116 (141)
T ss_dssp             HTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             cCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEE
Confidence            4568999999999999999999999999999999999999986443

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.70  E-value=0.006  Score=47.79  Aligned_cols=43  Identities=9%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCC
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  235 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~  235 (352)
                      .+.+++++|.+++.++++++++.++.+.|.+++.+.+||++++
T Consensus        68 ~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~  110 (132)
T d2yzia1          68 YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG  110 (132)
T ss_dssp             TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             cceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEECC
Confidence            4578999999999999999999999999999999999998765

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.50  E-value=0.0047  Score=47.82  Aligned_cols=46  Identities=9%  Similarity=0.088  Sum_probs=37.0

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...+++++|.+++.++++++++.++.+.|.+++.+.+||||+++.+
T Consensus        58 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~l  103 (122)
T d2yzqa2          58 DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKP  103 (122)
T ss_dssp             ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             cccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEE
Confidence            4557899999999999999999999999999999999999986443

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=95.37  E-value=0.0075  Score=46.46  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=41.5

Q ss_pred             cccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        193 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       193 ~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ...++.++|.+++.++++++++.++.+.+.+.+.+.+||||+++.+
T Consensus        58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~  103 (121)
T d1vr9a3          58 LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL  103 (121)
T ss_dssp             TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE
T ss_pred             ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeE
Confidence            3568999999999999999999999999999999999999987443

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.43  E-value=0.043  Score=42.21  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=36.7

Q ss_pred             ccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        196 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       196 ~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ....+|+++++++++++++.++.++|.+++.+.+||||+++.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~l  103 (126)
T d1zfja4          61 ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRL  103 (126)
T ss_dssp             TTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBE
T ss_pred             eeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeE
Confidence            3455667788999999999999999999999999999887444

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=93.41  E-value=0.018  Score=44.77  Aligned_cols=44  Identities=11%  Similarity=-0.008  Sum_probs=37.7

Q ss_pred             CcccccccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        192 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       192 l~~i~V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      ....+|+++|.+++.++++++++.++.+.|.++  +..||||+++.
T Consensus        71 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~  114 (132)
T d1yava3          71 LDQITVEEVMLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQV  114 (132)
T ss_dssp             TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCB
T ss_pred             cccccccccccccccccccchhHHHHHHHHHhC--CEEEEEccCCE
Confidence            346789999999999999999999999999764  56999998743

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.25  E-value=0.042  Score=42.01  Aligned_cols=43  Identities=12%  Similarity=0.136  Sum_probs=30.1

Q ss_pred             ccccccc--ccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCC
Q psy15906        195 ITARIVK--SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM  237 (352)
Q Consensus       195 i~V~dIM--~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~  237 (352)
                      .++.++|  .++++++++++++.++.++|.+++.+.+||||+++.
T Consensus        61 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~  105 (120)
T d1jr1a4          61 RFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDE  105 (120)
T ss_dssp             -----CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTE
T ss_pred             ceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCE
Confidence            3455555  457889999999999999999999999999998743

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.77  E-value=0.17  Score=38.58  Aligned_cols=42  Identities=7%  Similarity=0.048  Sum_probs=35.3

Q ss_pred             cccccccCeEEecCCCCHHHHHHHHHhCCCCeEEEEeCCCCc
Q psy15906        197 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMT  238 (352)
Q Consensus       197 V~dIM~~~vv~l~~~~tV~e~~~~L~~t~~~~fPVVd~~~~~  238 (352)
                      ....|.++..++.+++++.++.+.|.+++.+.+||||+++.+
T Consensus        68 ~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l  109 (131)
T d2riha1          68 PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGEL  109 (131)
T ss_dssp             BSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             ccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeE
Confidence            445566677889999999999999999999999999987443