Psyllid ID: psy15915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLRH
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
mevggkrdrgrpktrymhtvfpqdlkeKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVqgkmhyttkvgdlrh
Flexible Loop (DISEMBL)
mevggkrdrgrpktrymhtvfpqdlkekKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIqvqgkmhyttkvgdlrh
Low Complexity Region (SEG)
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLRH
Disordered region (IsUnstruct)
******************TVF*******KLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK******
Disordered Region (DISOPRED)
********RGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK*G*L**
Disordered Region (DISEMBL)
************KTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLRH
Disordered Region (DISPRO)
**********RPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVGGKRDRGRPKTRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTKVGDLRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P29742	1678	Clathrin heavy chain OS=D	yes	N/A	0.616	0.036	0.754	4e-20
Q68FD5	1675	Clathrin heavy chain 1 OS	yes	N/A	0.545	0.032	0.759	6e-19
Q00610	1675	Clathrin heavy chain 1 OS	yes	N/A	0.545	0.032	0.759	6e-19
P49951	1675	Clathrin heavy chain 1 OS	yes	N/A	0.545	0.032	0.759	6e-19
P11442	1675	Clathrin heavy chain 1 OS	yes	N/A	0.545	0.032	0.759	7e-19
P53675	1640	Clathrin heavy chain 2 OS	no	N/A	0.717	0.043	0.577	1e-18
P34574	1681	Probable clathrin heavy c	yes	N/A	0.676	0.039	0.611	1e-17
Q10161	1666	Probable clathrin heavy c	yes	N/A	0.797	0.047	0.417	2e-12
Q0WNJ6	1705	Clathrin heavy chain 1 OS	yes	N/A	0.565	0.032	0.535	4e-11
Q0WLB5	1703	Clathrin heavy chain 2 OS	yes	N/A	0.565	0.032	0.535	5e-11

>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/61 (75%), Positives = 50/61 (81%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93
           QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYIQ   K +   +
Sbjct: 685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTNQIKE 744

Query: 94  V 94
           V
Sbjct: 745 V 745

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Drosophila melanogaster (taxid: 7227)

>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 55/71 (77%)

Query: 17  MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
           +H +   ++++      Q+A+KYHEQL T+AL++LFESFKSY+GLFYFLGSIVN+SQD +
Sbjct: 667 LHAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYKGLFYFLGSIVNFSQDPD 726

Query: 77  VHFKYIQVQGK 87
           VH KYIQ   K
Sbjct: 727 VHLKYIQAACK 737

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 52/67 (77%)

Query: 17  MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQE 76
           +  +  Q++++    V QIA+KYHEQL    LI++FE+ KSYEGLFYFLGSIVN+SQD E
Sbjct: 669 LKAMLTQNIRQNLQVVVQIASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFSQDPE 728

Query: 77  VHFKYIQ 83
           VHFKYIQ
Sbjct: 729 VHFKYIQ 735

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chc1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 54/79 (68%)

Query: 16  YMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQ 75
           Y+  +   +L++    V QIAT+Y + +  + +I++FE FK++EGL+Y+LGSIVN ++D 
Sbjct: 663 YLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYYLGSIVNITEDP 722

Query: 76  EVHFKYIQVQGKMHYTTKV 94
           EV +KYIQ    M+  T+V
Sbjct: 723 EVVYKYIQAACLMNQFTEV 741

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           + Q   +Y EQL   A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI+   K
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAK 751

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           + Q   +Y EQL   A I LFE FKSYEGL++FLGS ++ S+D E+HFKYI+   K
Sbjct: 696 IVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAK 751

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
383861751	1678	PREDICTED: clathrin heavy chain-like [Me	0.545	0.032	0.925	3e-21
322795651	1723	hypothetical protein SINV_03041 [Solenop	0.545	0.031	0.925	4e-21
328779022	1678	PREDICTED: clathrin heavy chain-like iso	0.545	0.032	0.925	4e-21
350403105	1678	PREDICTED: clathrin heavy chain-like [Bo	0.545	0.032	0.925	4e-21
307168135	1676	Clathrin heavy chain [Camponotus florida	0.545	0.032	0.925	4e-21
340728255	1678	PREDICTED: clathrin heavy chain-like [Bo	0.545	0.032	0.925	4e-21
307200331	1678	Clathrin heavy chain [Harpegnathos salta	0.545	0.032	0.925	4e-21
380013532	1635	PREDICTED: LOW QUALITY PROTEIN: clathrin	0.545	0.033	0.925	4e-21
332020169	1645	Clathrin heavy chain [Acromyrmex echinat	0.545	0.032	0.925	4e-21
156544986	1680	PREDICTED: clathrin heavy chain-like iso	0.545	0.032	0.925	4e-21

>gi|383861751|ref|XP_003706348.1| PREDICTED: clathrin heavy chain-like [Megachile rotundata]

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795651|gb|EFZ18330.1| hypothetical protein SINV_03041 [Solenopsis invicta]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779022|ref|XP_623111.3| PREDICTED: clathrin heavy chain-like isoform 1 [Apis mellifera]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403105|ref|XP_003486702.1| PREDICTED: clathrin heavy chain-like [Bombus impatiens]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168135|gb|EFN61414.1| Clathrin heavy chain [Camponotus floridanus]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728255|ref|XP_003402443.1| PREDICTED: clathrin heavy chain-like [Bombus terrestris]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200331|gb|EFN80585.1| Clathrin heavy chain [Harpegnathos saltator]

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013532|ref|XP_003690808.1| PREDICTED: LOW QUALITY PROTEIN: clathrin heavy chain-like [Apis florea]

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020169|gb|EGI60613.1| Clathrin heavy chain [Acromyrmex echinatior]

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 653 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 706

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544986|ref|XP_001607995.1| PREDICTED: clathrin heavy chain-like isoform 1 [Nasonia vitripennis] gi|345481953|ref|XP_003424493.1| PREDICTED: clathrin heavy chain-like isoform 2 [Nasonia vitripennis]

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN+SQDQEVHFKYIQ   K
Sbjct: 684 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNFSQDQEVHFKYIQAACK 737

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|F1P3J1	500	CLTC "Uncharacterized protein"	0.545	0.108	0.759	7.3e-19
FB|FBgn0000319	1678	Chc "Clathrin heavy chain" [Dr	0.616	0.036	0.754	1.4e-18
UNIPROTKB|I3LGD4	769	I3LGD4 "Uncharacterized protei	0.545	0.070	0.759	4e-18
UNIPROTKB|F1MPU0	1661	CLTC "Clathrin heavy chain 1"	0.545	0.032	0.759	3.2e-17
UNIPROTKB|F1NW23	1662	CLTC "Uncharacterized protein"	0.545	0.032	0.759	3.2e-17
UNIPROTKB|P49951	1675	CLTC "Clathrin heavy chain 1"	0.545	0.032	0.759	3.3e-17
UNIPROTKB|F1PHQ0	1675	CLTC "Uncharacterized protein"	0.545	0.032	0.759	3.3e-17
UNIPROTKB|Q00610	1675	CLTC "Clathrin heavy chain 1"	0.545	0.032	0.759	3.3e-17
MGI|MGI:2388633	1675	Cltc "clathrin, heavy polypept	0.545	0.032	0.759	3.3e-17
RGD|2364	1675	Cltc "clathrin, heavy chain (H	0.545	0.032	0.759	3.3e-17

UNIPROTKB|F1P3J1 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   419 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 472

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

FB|FBgn0000319 Chc "Clathrin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 234 (87.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 46/61 (75%), Positives = 50/61 (81%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK 93
             QIATKYHEQLT KALIDLFE FKSY+GLFYFL SIVN+SQD EVHFKYIQ   K +   +
Sbjct:   685 QIATKYHEQLTNKALIDLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTNQIKE 744

Query:    94 V 94
             V
Sbjct:   745 V 745

GO:0007291 "sperm individualization" evidence=IMP

GO:0016183 "synaptic vesicle coating" evidence=NAS;TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0030125 "clathrin vesicle coat" evidence=TAS

GO:0005905 "coated pit" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0030129 "clathrin coat of synaptic vesicle" evidence=NAS

GO:0030132 "clathrin coat of coated pit" evidence=IEA;NAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0035002 "liquid clearance, open tracheal system" evidence=IMP

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IMP

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006897 "endocytosis" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0033363 "secretory granule organization" evidence=IMP

GO:0030141 "secretory granule" evidence=IDA

GO:0007594 "puparial adhesion" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

UNIPROTKB|I3LGD4 I3LGD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 223 (83.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1MPU0 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   671 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 724

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1NW23 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   671 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 724

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0033572 "transferrin transport" evidence=IEA

UNIPROTKB|P49951 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0030117 "membrane coat" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1PHQ0 CLTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q00610 CLTC "Clathrin heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0030118 "clathrin coat" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0032588 "trans-Golgi network membrane" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0031623 "receptor internalization" evidence=IMP

GO:0033572 "transferrin transport" evidence=IMP

MGI|MGI:2388633 Cltc "clathrin, heavy polypeptide (Hc)" [Mus musculus (taxid:10090)]

 Score = 223 (83.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005819 "spindle" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IDA

GO:0030118 "clathrin coat" evidence=ISO

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030506 "ankyrin binding" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031523 "Myb complex" evidence=ISO

GO:0031623 "receptor internalization" evidence=ISO

GO:0033572 "transferrin transport" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0090307 "spindle assembly involved in mitosis" evidence=ISO

RGD|2364 Cltc "clathrin, heavy chain (Hc)" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 41/54 (75%), Positives = 50/54 (92%)

Query:    34 QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct:   684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005819 "spindle" evidence=IEA;ISO;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0007067 "mitosis" evidence=IEA;ISO;IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0030117 "membrane coat" evidence=ISO

GO:0030118 "clathrin coat" evidence=IDA;TAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030315 "T-tubule" evidence=IDA

GO:0030506 "ankyrin binding" evidence=IDA

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IDA

GO:0031623 "receptor internalization" evidence=IEA;ISO

GO:0033572 "transferrin transport" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34574	CLH_CAEEL	No assigned EC number	0.6119	0.6767	0.0398	yes	N/A
P11442	CLH1_RAT	No assigned EC number	0.7592	0.5454	0.0322	yes	N/A
Q00610	CLH1_HUMAN	No assigned EC number	0.7592	0.5454	0.0322	yes	N/A
Q2RBN7	CLH1_ORYSJ	No assigned EC number	0.5178	0.5656	0.0327	yes	N/A
P29742	CLH_DROME	No assigned EC number	0.7540	0.6161	0.0363	yes	N/A
P49951	CLH1_BOVIN	No assigned EC number	0.7592	0.5454	0.0322	yes	N/A
Q0WNJ6	CLAH1_ARATH	No assigned EC number	0.5357	0.5656	0.0328	yes	N/A
Q0WLB5	CLAH2_ARATH	No assigned EC number	0.5357	0.5656	0.0328	yes	N/A
Q68FD5	CLH1_MOUSE	No assigned EC number	0.7592	0.5454	0.0322	yes	N/A
Q2QYW2	CLH2_ORYSJ	No assigned EC number	0.5178	0.5656	0.0327	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
smart00299	140	smart00299, CLH, Clathrin heavy chain repeat homol	2e-05

>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 36 ATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN-YSQDQEVHFKYIQ 83
            +  + +    +++LFE     E L  +L S +   S++  +  K I+
Sbjct: 1  LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIE 49

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG0985|consensus	1666		100.0
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.83
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.77
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	92.34
smart00384	26	AT_hook DNA binding domain with preference for A/T	88.86
cd01025	112	TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TO	87.65
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	87.35

>KOG0985|consensus

Probab=100.00  E-value=6.1e-43  Score=316.11  Aligned_cols=84  Identities=52%  Similarity=0.850  Sum_probs=82.9

Q ss_pred             chhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915         14 TRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK   93 (99)
Q Consensus        14 ~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE   93 (99)
                      -+||++||++|+|||||+|||||+||||+||+++||+|||+||||||||||||||||+|||||||||||||||||||++|
T Consensus       663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE  742 (1666)
T KOG0985|consen  663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE  742 (1666)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccc
Q psy15915         94 VGDL   97 (99)
Q Consensus        94 VERv   97 (99)
                      ||||
T Consensus       743 vERi  746 (1666)
T KOG0985|consen  743 VERI  746 (1666)
T ss_pred             HHHH
Confidence            9998

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.83  E-value=0.0005  Score=46.46  Aligned_cols=60  Identities=20%  Similarity=0.348  Sum_probs=53.1

Q ss_pred             HhhhhChHHHHHHHHhccccchhhheehhhccc-cCCchhHHHHHHHhhhcCCceeecccC
Q psy15915         39 YHEQLTTKALIDLFESFKSYEGLFYFLGSIVNY-SQDQEVHFKYIQVQGKMHYTTKVGDLR   98 (99)
Q Consensus        39 Ysd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~-seDpdVhFKYIeAAak~gQ~kEVERv~   98 (99)
                      ..+.+.++.+|..|++.+..+-++-||-+++.. +.+|++|-.+|+..++..+-+.++.++
T Consensus         4 ~~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~   64 (140)
T smart00299        4 VSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLD   64 (140)
T ss_pred             CCCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHH
Confidence            467889999999999999999999999999877 789999999999999988877766553

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.77  E-value=0.03  Score=37.63  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             HHhhhhChHHHHHHHHhccccchhhheehhhcc--ccCCchhHHHHHHHhhhcCCceeecc
Q psy15915         38 KYHEQLTTKALIDLFESFKSYEGLFYFLGSIVN--YSQDQEVHFKYIQVQGKMHYTTKVGD   96 (99)
Q Consensus        38 kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn--~seDpdVhFKYIeAAak~gQ~kEVER   96 (99)
                      +..+.+.++.+|..|++-+..+-+.-||-.++.  ...++++|-.+|+..++.+..+++++
T Consensus         3 ~~~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~   63 (143)
T PF00637_consen    3 ESTDPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE   63 (143)
T ss_dssp             HHCTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred             cCCCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence            456788899999999999999999999999985  34789999999999999988777665

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=92.34  E-value=0.051  Score=26.26  Aligned_cols=10  Identities=60%  Similarity=1.169  Sum_probs=4.0

Q ss_pred             ccCCCCccch
Q psy15915          6 KRDRGRPKTR   15 (99)
Q Consensus         6 ~~~~~~~~~~   15 (99)
                      +|.||||++-
T Consensus         1 ~r~RGRP~k~   10 (13)
T PF02178_consen    1 KRKRGRPRKN   10 (13)
T ss_dssp             S--SS--TT-
T ss_pred             CCcCCCCccc
Confidence            5789999863

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=88.86  E-value=0.2  Score=28.42  Aligned_cols=10  Identities=60%  Similarity=1.139  Sum_probs=8.3

Q ss_pred             ccCCCCccch
Q psy15915          6 KRDRGRPKTR   15 (99)
Q Consensus         6 ~~~~~~~~~~   15 (99)
                      +|+||||++-
T Consensus         1 kRkRGRPrK~   10 (26)
T smart00384        1 KRKRGRPRKA   10 (26)
T ss_pred             CCCCCCCCCC
Confidence            5899999874

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR

Probab=87.65  E-value=0.59  Score=33.31  Aligned_cols=47  Identities=15%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             HHHHHHhccccchhhheehhhccccCCc---hhHHHHHHHhhhcCCceee
Q psy15915         48 LIDLFESFKSYEGLFYFLGSIVNYSQDQ---EVHFKYIQVQGKMHYTTKV   94 (99)
Q Consensus        48 lI~lFE~~ks~EGLyyyLgsiVn~seDp---dVhFKYIeAAak~gQ~kEV   94 (99)
                      =+..||+-+.|.|+|+.|+..++--..-   +..++=+...++.++++||
T Consensus        11 Dv~~iE~~~~y~G~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EV   60 (112)
T cd01025          11 DVLAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEV   60 (112)
T ss_pred             HHHHHHhhCccceEEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEE
Confidence            3567899999999999998887654322   4566666677777788876

RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.

>smart00671 SEL1 Sel1-like repeats

Probab=87.35  E-value=0.62  Score=24.38  Aligned_cols=29  Identities=21%  Similarity=0.366  Sum_probs=22.8

Q ss_pred             hhhheehhhccccCCchhHHHHHHHhhhcCC
Q psy15915         60 GLFYFLGSIVNYSQDQEVHFKYIQVQGKMHY   90 (99)
Q Consensus        60 GLyyyLgsiVn~seDpdVhFKYIeAAak~gQ   90 (99)
                      |.+|+-|.  ...+|++--++|.+.||+.|.
T Consensus         8 g~~~~~G~--g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        8 GQMYEYGL--GVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             HHHHHcCC--CCCcCHHHHHHHHHHHHHccC
Confidence            44555565  567999999999999999874

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1xi4_A	1630	Clathrin D6 Coat Length = 1630		5e-20

>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 50/54 (92%)
Query: 34  QIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGK 87
           Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K
Sbjct: 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	4e-20

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630

 Score = 82.4 bits (203), Expect = 4e-20
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 32  VSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYT 91
             Q+A+KYHEQL+T++LI+LFESFKS+EGLFYFLGSIVN+SQD +VHFKYIQ   K    
Sbjct: 682 CVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQI 741

Query: 92  TKV 94
            +V
Sbjct: 742 KEV 744

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	100.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.34
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	82.14

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=100.00  E-value=1.5e-40  Score=304.87  Aligned_cols=84  Identities=50%  Similarity=0.842  Sum_probs=82.8

Q ss_pred             chhHHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915         14 TRYMHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK   93 (99)
Q Consensus        14 ~~~l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE   93 (99)
                      -+||++||+.|+|||||+||||||||||+||+++||+|||+|||+||||||||||||+|+||||||||||||||+||++|
T Consensus       664 ~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~e  743 (1630)
T 1xi4_A          664 LECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKE  743 (1630)
T ss_pred             HHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccc
Q psy15915         94 VGDL   97 (99)
Q Consensus        94 VERv   97 (99)
                      ||||
T Consensus       744 veri  747 (1630)
T 1xi4_A          744 VERI  747 (1630)
T ss_pred             hhHH
Confidence            9998

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.34  E-value=0.14  Score=48.56  Aligned_cols=68  Identities=22%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             hhHHHhcccCcchhHHHHHHHH-HHHhhhhChHHHHHHHHhccccchhhheehhhccccCCchhHHHHHHHhhhcCCcee
Q psy15915         15 RYMHTVFPQDLKEKKLEVSQIA-TKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNYSQDQEVHFKYIQVQGKMHYTTK   93 (99)
Q Consensus        15 ~~l~~lL~~N~rqNlQiVVqvA-~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~seDpdVhFKYIeAAak~gQ~kE   93 (99)
                      +..+-+|..|-.|.++--+.-. ..+||.||     +++.++...-.+-.|+        .+.+|.|.|.+.|++|||+.
T Consensus       434 El~r~vl~q~r~~lle~Wl~e~KL~~SEeLG-----Dlv~~~d~~lAl~iY~--------~a~~~~Kvi~~l~~~gq~~k  500 (1630)
T 1xi4_A          434 ELCRPVLQQGRKQLLEKWLKEDKLECSEELG-----DLVKSVDPTLALSVYL--------RANVPNKVIQCFAETGQVQK  500 (1630)
T ss_pred             HHHHHHHHhchHHHHHHHHHhCCccccHHHH-----HHHHhcChHHHHHHHH--------hcCCcHHHHHHHHHhCCHHH
Confidence            4455667777666666555555 56888888     7888888888988888        56799999999999999987


Q ss_pred             ec
Q psy15915         94 VG   95 (99)
Q Consensus        94 VE   95 (99)
                      +-
T Consensus       501 i~  502 (1630)
T 1xi4_A          501 IV  502 (1630)
T ss_pred             HH
Confidence            63

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=82.14  E-value=0.44  Score=26.24  Aligned_cols=10  Identities=70%  Similarity=1.042  Sum_probs=8.6

Q ss_pred             CccCCCCccc
Q psy15915          5 GKRDRGRPKT   14 (99)
Q Consensus         5 ~~~~~~~~~~   14 (99)
                      .||.|||||-
T Consensus         4 pKrpRgRpkG   13 (26)
T 2ezd_A            4 PKRPRGRPKG   13 (26)
T ss_dssp             CCCCSSCCTT
T ss_pred             CcCCCCCcCc
Confidence            5899999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.5

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.50  E-value=6.3e-09  Score=79.64  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             HHHhcccCcchhHHHHHHHHHHHhhhhChHHHHHHHHhccccchhhheehhhccc-cCCchhHHHHHHHhhhcCCceeec
Q psy15915         17 MHTVFPQDLKEKKLEVSQIATKYHEQLTTKALIDLFESFKSYEGLFYFLGSIVNY-SQDQEVHFKYIQVQGKMHYTTKVG   95 (99)
Q Consensus        17 l~~lL~~N~rqNlQiVVqvA~kYsd~lg~~~lI~lFE~~ks~EGLyyyLgsiVn~-seDpdVhFKYIeAAak~gQ~kEVE   95 (99)
                      ...++..+-.++.|++......+.+.+  ..+|++||+++.+|+||+||.++++. +.++.+|+++|.++||.++-+.+|
T Consensus        76 ~~~l~~~~e~~la~i~~~~~~~~~d~l--~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e  153 (336)
T d1b89a_          76 CFACVDGKEFRLAQMCGLHIVVHADEL--EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE  153 (336)
T ss_dssp             HHHHHHTTCHHHHHHTTTTTTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHhhcCHHHH--HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHH
Confidence            344555544455566655566677766  46999999999999999999999986 788899999999999999999888


Q ss_pred             ccC
Q psy15915         96 DLR   98 (99)
Q Consensus        96 Rv~   98 (99)
                      .++
T Consensus       154 ~l~  156 (336)
T d1b89a_         154 HLE  156 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764