Psyllid ID: psy15946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MFLRPFQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEcccccHHcHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccEEEEccEEEccHHHHHHHHHccccHHHccccccccccccccccccccEEEcccccccccEEEEccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccHHcccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHccccccccEEEEcccEcccHHHHHHHHHccHHHHHHcccccccccccccccccEEEEEcccccccEEEEEEcccccccEEEEcccccccccEEcccc
Coil and Loop (DISEMBL)
mflrpfqnpfmfyipmtwqekeAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHlvkfddkdvfmSRETQQEFKERlgtdvinvpqIFVEGVhigtwqekeaGKIVMYSTTMGIVRDTYHRCLKVKQILRTHlvkfddkdvfmSRETQQEFKERlgtdvinvpqIFVEGVHIGDADAIERLNESGELRrilkpykspdacticqvcggyrllpcslcngskksvhrnhFTTELVALKcmncdevglvkcyac
Flexible Loop (DISEMBL)
mflrpfqnpFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRthlvkfddkdvfMSRETQQEFkerlgtdvinvPQIFVEGVhigtwqekeaGKIVMYSTTMGIVRDTYHRCLKVKQILRthlvkfddkdvfMSRETQQEFkerlgtdvinVPQIFVEGVHIGDADAIERLNESGELRRilkpykspdaCTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELvalkcmncdevglvkcyac
Low Complexity Region (SEG)
MFLRPFQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Disordered region (IsUnstruct)
*****FQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYA*
Disordered Region (DISOPRED)
**L**********************IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDK***********************************WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRET**************VPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Disordered Region (DISEMBL)
MFLRPFQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Disordered Region (DISPRO)
*FLRPFQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLRPFQNPFMFYIPMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9VNL4	454	Glutaredoxin domain-conta	yes	N/A	0.609	0.337	0.656	4e-61
Q9W4S1	582	Glutaredoxin domain-conta	no	N/A	0.637	0.274	0.631	3e-60
A8MXD5	290	Glutaredoxin domain-conta	yes	N/A	0.605	0.524	0.396	4e-27
Q50H32	290	Glutaredoxin domain-conta	yes	N/A	0.605	0.524	0.389	1e-26
Q9FLE8	390	Uncharacterized protein A	no	N/A	0.705	0.453	0.286	5e-18
Q9LH89	428	Uncharacterized protein A	no	N/A	0.593	0.348	0.274	1e-12
Q3TYR5	254	Glutaredoxin domain-conta	no	N/A	0.509	0.503	0.264	6e-06
A6NFK2	248	Glutaredoxin domain-conta	no	N/A	0.505	0.512	0.24	0.0001

>sp|Q9VNL4|GRCR1_DROME Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2

 Score =  234 bits (597), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 130/157 (82%)

Query: 95  TWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154
            ++EK+ GK+V+Y+T+MGI+R+TY +C  VKQILRT LVKF+++DVFMS E Q E ++R+
Sbjct: 298 NFKEKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRM 357

Query: 155 GTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCS 214
            +  + VPQ++VEG HIGDA+ +ER+NESGELR++LKPYKS  +   CQ CGGYRLLPC 
Sbjct: 358 QSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCP 417

Query: 215 LCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
            CNGSKKSVHRNHFT E VALKCMNCDEVGLVKC+ C
Sbjct: 418 SCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454

Drosophila melanogaster (taxid: 7227)

>sp|Q9W4S1|GRCR2_DROME Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 129/160 (80%)

Query: 92  HIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFK 151
           ++  + EK+ GK+V+Y+T+MGI+RDTY +C  VK+ILRT L+KF+++D+FMS E QQE +
Sbjct: 423 NVKNYMEKDVGKVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMR 482

Query: 152 ERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLL 211
           ER+  + I VPQ+FVEG  IGDA+ +ERLNESGELR++L+PYKS      CQ CGGYR+L
Sbjct: 483 ERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRML 542

Query: 212 PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           PC  CNGSKKS+HRNHFT E VALKCMNCDEVGL+KC  C
Sbjct: 543 PCPACNGSKKSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582

Drosophila melanogaster (taxid: 7227)

>sp|A8MXD5|GRCR1_HUMAN Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=1 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
           E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ E  +E  ER    ++
Sbjct: 135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSE 194

Query: 158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
             ++P +F++G ++G A+ I  +NESGEL+ IL   +       C  CGG+  LPCS+C+
Sbjct: 195 APSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query: 218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           GSK S+ RN FT    ALKC  C+E GL +C  C
Sbjct: 255 GSKMSMFRNCFTDSFKALKCTACNENGLQRCKNC 288

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Homo sapiens (taxid: 9606)

>sp|Q50H32|GRCR1_MOUSE Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
           E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    ++
Sbjct: 135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE 194

Query: 158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
             ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+C+
Sbjct: 195 APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query: 218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           GSK SV RN FT    ALKC  C+E GL +C  C
Sbjct: 255 GSKMSVFRNCFTDAFKALKCTACNENGLQRCKNC 288

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Mus musculus (taxid: 10090)

>sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 22/199 (11%)

Query: 69  QQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGK--IVMYSTTMGIVRDTYHRCLKVKQ 126
            +  K     D ++ P I      +  ++ K  GK  +V+Y T++  +R TY  C  ++ 
Sbjct: 196 HENVKSSCRVDDLDPPDI------VSRFKRKTLGKERVVLYFTSLRGIRKTYEDCCNIRI 249

Query: 127 ILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-----INVPQIFVEGVHIGDADAIERLN 181
           IL++  ++ D++DV M    + E K+ L         I +P++F+   ++G  + I++LN
Sbjct: 250 ILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLN 309

Query: 182 ESGELRRILKPYK-----SPDACTICQVCGGYRLLPCSLCNGSKKSVH----RNHFTTEL 232
           E+GEL +++K  +     SP     C+ CG  R +PC  C+GS K  H     +   TE 
Sbjct: 310 ENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEY 369

Query: 233 VALKCMNCDEVGLVKCYAC 251
              +C  C+E GL++C+ C
Sbjct: 370 GFQRCPYCNENGLIRCHVC 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH89|Y3885_ARATH Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 26/175 (14%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV---- 158
           ++++Y T++  +R TY     V+ IL++  ++ D++DV M    + E KE LG       
Sbjct: 252 RVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGV 311

Query: 159 -INVPQIFVEGVHIGDADAIERLNESGELRRIL----KPYKSPDACTI-CQVCGGYRLLP 212
            I +P++F+   +IG A+ I +LNE G+L ++L    +  ++ +   + C+ CG  R +P
Sbjct: 312 GITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVP 371

Query: 213 CSLCNGSKKSVHRNHFTT----------------ELVALKCMNCDEVGLVKCYAC 251
           C  C+GS K  +                      E     C +C+E GL++C  C
Sbjct: 372 CETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q3TYR5|GRCR2_MOUSE Glutaredoxin domain-containing cysteine-rich protein 2 OS=Mus musculus GN=Grxcr2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS-----RETQQEFKERLGT 156
           GKI++Y+  + I+R    +   +++IL+   V  +   +        RE      ER G+
Sbjct: 120 GKIIIYTNNLKIIRTPMDKRDFMRKILQKEDVAEEASLMITGENDGDREQGCPLPERNGS 179

Query: 157 DVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLC 216
            +    + F+   H  D                      P+ C  CQ  G   +  CSLC
Sbjct: 180 PLPESERTFLHSQHTQDGLV-------------------PEDCLHCQGSG---IATCSLC 217

Query: 217 NGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           +GSK S+  N F     AL+C  C+E GL  C  C
Sbjct: 218 HGSKFSMLANRFKESYRALRCPACNENGLQPCRIC 252

Mus musculus (taxid: 10090)

>sp|A6NFK2|GRCR2_HUMAN Glutaredoxin domain-containing cysteine-rich protein 2 OS=Homo sapiens GN=GRXCR2 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 23/150 (15%)

Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
           GKI++Y+  + I+R    +   V++IL+        ++  M++E     +++    ++  
Sbjct: 120 GKIIIYTNNLKIIRTPMDKRDFVRKILQKEEEAE--EESLMNKEESYGGRDQHDRPLVEA 177

Query: 162 PQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKK 221
                +  +  + D  E                  D+C  C+  G      CSLC+GSK 
Sbjct: 178 ESTLPQNRYTQEGDIPE------------------DSCFHCRGSGS---ATCSLCHGSKF 216

Query: 222 SVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           S+  N F     AL+C  C+E GL  C  C
Sbjct: 217 SMLANRFKESYRALRCPACNENGLQPCQIC 246

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
328708637	485	PREDICTED: glutaredoxin domain-containin	0.597	0.309	0.808	2e-74
270005423	392	hypothetical protein TcasGA2_TC007476 [T	0.621	0.397	0.743	5e-66
91080817	192	PREDICTED: similar to CG31559 CG31559-PA	0.749	0.979	0.637	7e-66
347963496	929	AGAP000262-PA [Anopheles gambiae str. PE	0.621	0.167	0.692	5e-64
389613654	232	similar to CG31559, partial [Papilio xut	0.625	0.676	0.681	7e-63
345491981	635	PREDICTED: hypothetical protein LOC10011	0.657	0.259	0.630	5e-62
195144598	495	GL23481 [Drosophila persimilis] gi|19410	0.621	0.315	0.679	4e-61
198452758	490	GA16323 [Drosophila pseudoobscura pseudo	0.621	0.318	0.679	4e-61
194769720	571	GF21786 [Drosophila ananassae] gi|190622	0.637	0.280	0.675	4e-61
195393668	714	GJ19392 [Drosophila virilis] gi|19414998	0.737	0.259	0.604	5e-61

>gi|328708637|ref|XP_001946886.2| PREDICTED: glutaredoxin domain-containing cysteine-rich protein CG12206-like [Acyrthosiphon pisum]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 146/157 (92%)

Query: 95  TWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154
           TWQEKEAGK+V+Y+TTMGIVRDTY RCL+V+QILRTHLVK+ ++DVFMSRE Q+E +ERL
Sbjct: 329 TWQEKEAGKVVLYTTTMGIVRDTYQRCLQVRQILRTHLVKYVERDVFMSREVQKEIRERL 388

Query: 155 GTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCS 214
           G D I+VPQ+FVEG  IGDA+A+ERLNESGELR ILKP+KSPDACT CQVCGGYRLLPC 
Sbjct: 389 GGDSISVPQLFVEGNLIGDAEAVERLNESGELRSILKPFKSPDACTTCQVCGGYRLLPCP 448

Query: 215 LCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           +CNGSKKSVHRNHFTTE++ALKCMNCDEVGLV+CYAC
Sbjct: 449 MCNGSKKSVHRNHFTTEMIALKCMNCDEVGLVQCYAC 485

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005423|gb|EFA01871.1| hypothetical protein TcasGA2_TC007476 [Tribolium castaneum]

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 138/156 (88%)

Query: 96  WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155
           ++EK+AGK+V+Y+TTMGI+R+TY  C+KVKQILRT L+KF+++DVFMS E Q E +ER+ 
Sbjct: 237 YKEKDAGKVVVYTTTMGILRETYQACMKVKQILRTLLIKFEERDVFMSTEYQNEIRERMR 296

Query: 156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
            D I VPQ+FV+G H+GDA+ IERLNESGELRRILKP+KS DACT C+VCGGYRLLPC +
Sbjct: 297 CDQILVPQVFVDGQHVGDAETIERLNESGELRRILKPFKSMDACTTCKVCGGYRLLPCQV 356

Query: 216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           CNGSKKSVHRNHFTTE VALKCMNCDEVGLVKC AC
Sbjct: 357 CNGSKKSVHRNHFTTEFVALKCMNCDEVGLVKCSAC 392

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080817|ref|XP_970308.1| PREDICTED: similar to CG31559 CG31559-PA [Tribolium castaneum]

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 152/193 (78%), Gaps = 5/193 (2%)

Query: 59  DKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTY 118
           D ++   + T + FK R+  +V      F     +  ++EK+AGK+V+Y+TTMGI+R+TY
Sbjct: 5   DVEILGPKGTIRGFKNRVRANVR-----FYSDPVLQNYKEKDAGKVVVYTTTMGILRETY 59

Query: 119 HRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE 178
             C+KVKQILRT L+KF+++DVFMS E Q E +ER+  D I VPQ+FV+G H+GDA+ IE
Sbjct: 60  QACMKVKQILRTLLIKFEERDVFMSTEYQNEIRERMRCDQILVPQVFVDGQHVGDAETIE 119

Query: 179 RLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCM 238
           RLNESGELRRILKP+KS DACT C+VCGGYRLLPC +CNGSKKSVHRNHFTTE VALKCM
Sbjct: 120 RLNESGELRRILKPFKSMDACTTCKVCGGYRLLPCQVCNGSKKSVHRNHFTTEFVALKCM 179

Query: 239 NCDEVGLVKCYAC 251
           NCDEVGLVKC AC
Sbjct: 180 NCDEVGLVKCSAC 192

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963496|ref|XP_310856.5| AGAP000262-PA [Anopheles gambiae str. PEST] gi|333467171|gb|EAA06446.5| AGAP000262-PA [Anopheles gambiae str. PEST]

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 108/156 (69%), Positives = 135/156 (86%)

Query: 96  WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155
           +++KEAGK+V+YST+MGIVR+TY +C  VKQILRT LVKF+++D+FMS E QQE +ER+ 
Sbjct: 774 YKDKEAGKVVVYSTSMGIVRETYTKCANVKQILRTLLVKFEERDIFMSSEYQQEIRERMQ 833

Query: 156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
           +D IN+PQ+FV+G HIGDA+ IERLNESGELR++LKPYK  ++  +C+VCGGYRLLPC  
Sbjct: 834 SDTINIPQVFVDGQHIGDAECIERLNESGELRKMLKPYKCLESPYMCKVCGGYRLLPCPS 893

Query: 216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           C GSKKS+HRNHFT E VALKCMNCDEVGLVKC+ C
Sbjct: 894 CGGSKKSIHRNHFTAEFVALKCMNCDEVGLVKCHNC 929

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613654|dbj|BAM20154.1| similar to CG31559, partial [Papilio xuthus]

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 136/157 (86%)

Query: 95  TWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL 154
           +++EK+AGK+V+Y+TTMGIVR TY RC+ VK+ILR  LVK++++DVFMS E Q E ++R+
Sbjct: 75  SYKEKDAGKVVVYTTTMGIVRSTYQRCVLVKKILRNLLVKYEERDVFMSTEYQDEIRDRM 134

Query: 155 GTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCS 214
            +D I VPQ+F++G HIGDAD +E+LNE GELR++LKPYKSPDAC  CQ+CGG+RLLPC 
Sbjct: 135 KSDQILVPQLFIDGQHIGDADTVEKLNECGELRKMLKPYKSPDACNTCQMCGGFRLLPCR 194

Query: 215 LCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           +CNGSKKS+HRNHFT E VALKCMNCDEVGLV+C AC
Sbjct: 195 ICNGSKKSLHRNHFTAEFVALKCMNCDEVGLVRCEAC 231

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491981|ref|XP_001602602.2| PREDICTED: hypothetical protein LOC100118696 [Nasonia vitripennis]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 138/165 (83%)

Query: 87  FVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRET 146
           F++      ++ K+AGK+V+Y+TTMGIVR+TY+RC+ VKQILRTH+VK++++D++MS E+
Sbjct: 471 FLQKPSSKNYKAKDAGKVVVYTTTMGIVRETYYRCVLVKQILRTHMVKYEERDMYMSTES 530

Query: 147 QQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCG 206
           Q E ++R+G   I VPQ+F++G +IGDA  +ERLNESGELR++LKPYKS DAC+ CQ+CG
Sbjct: 531 QTELRDRIGCAAIEVPQLFIDGQYIGDAHTVERLNESGELRQMLKPYKSLDACSTCQMCG 590

Query: 207 GYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           GYRLLPC +CNGSKKS HRN FT E +ALKCMNCDEVGLV+C  C
Sbjct: 591 GYRLLPCPVCNGSKKSEHRNEFTAEFIALKCMNCDEVGLVRCPNC 635

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144598|ref|XP_002013283.1| GL23481 [Drosophila persimilis] gi|194102226|gb|EDW24269.1| GL23481 [Drosophila persimilis]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 130/156 (83%)

Query: 96  WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155
           ++EK+ GK+V+Y+T+MGI+RDTY +C  VKQILRT L+KF+++DVFMS E Q E ++R+ 
Sbjct: 340 YKEKDLGKVVLYTTSMGIIRDTYTKCANVKQILRTLLIKFEERDVFMSVEYQAEMRQRMQ 399

Query: 156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
           T  + VPQ++VEG HIGDAD +ERLNESGELR++LKPYKS  +   CQ CGGYRLLPC  
Sbjct: 400 TSHVRVPQLYVEGQHIGDADTVERLNESGELRQLLKPYKSISSTYTCQTCGGYRLLPCPS 459

Query: 216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           CNGSKKSVHRNHFT E VALKCMNCDEVGLVKC+ C
Sbjct: 460 CNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 495

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198452758|ref|XP_001358930.2| GA16323 [Drosophila pseudoobscura pseudoobscura] gi|198132063|gb|EAL28073.2| GA16323 [Drosophila pseudoobscura pseudoobscura]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 130/156 (83%)

Query: 96  WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155
           ++EK+ GK+V+Y+T+MGI+RDTY +C  VKQILRT L+KF+++DVFMS E Q E ++R+ 
Sbjct: 335 YKEKDLGKVVLYTTSMGIIRDTYTKCANVKQILRTLLIKFEERDVFMSVEYQAEMRQRMQ 394

Query: 156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
           T  + VPQ++VEG HIGDAD +ERLNESGELR++LKPYKS  +   CQ CGGYRLLPC  
Sbjct: 395 TSHVRVPQLYVEGQHIGDADTVERLNESGELRQLLKPYKSISSTYTCQTCGGYRLLPCPS 454

Query: 216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           CNGSKKSVHRNHFT E VALKCMNCDEVGLVKC+ C
Sbjct: 455 CNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 490

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194769720|ref|XP_001966949.1| GF21786 [Drosophila ananassae] gi|190622744|gb|EDV38268.1| GF21786 [Drosophila ananassae]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 131/160 (81%)

Query: 92  HIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFK 151
           ++  + EK+ GK+V+Y+T+MGI+RDTY +C  VKQILRT L+KF+++DVFMS E QQE +
Sbjct: 412 NVKNYLEKDMGKVVLYTTSMGIIRDTYAKCANVKQILRTLLIKFEERDVFMSVEYQQEMR 471

Query: 152 ERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLL 211
           ER+  + I VPQ+FVEG H+GDAD +ERLNESGELR++LKPYKS      CQ CGGYRLL
Sbjct: 472 ERMHDETIRVPQLFVEGQHLGDADTVERLNESGELRQLLKPYKSIATAYTCQTCGGYRLL 531

Query: 212 PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
           PC  C+GSKKSVHRNHFTTE VALKCMNCDEVGLVKC  C
Sbjct: 532 PCPSCSGSKKSVHRNHFTTEFVALKCMNCDEVGLVKCPNC 571

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393668|ref|XP_002055475.1| GJ19392 [Drosophila virilis] gi|194149985|gb|EDW65676.1| GJ19392 [Drosophila virilis]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 141/187 (75%), Gaps = 2/187 (1%)

Query: 65  SRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKV 124
           S+ T +  K R+   V    Q+  +  ++  + EK+ GK+V+Y+T+MGI+RDTY +C  V
Sbjct: 530 SKGTVRGVKNRVRNGVATFLQL--QQPNVKNYMEKDLGKVVLYTTSMGIIRDTYAKCANV 587

Query: 125 KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESG 184
           KQILRT LVKF+++DVFMS E QQE ++R+  + I VPQ+FVEG HIGDAD +ERLNESG
Sbjct: 588 KQILRTLLVKFEERDVFMSIEYQQEMRDRMHHETIRVPQLFVEGQHIGDADTVERLNESG 647

Query: 185 ELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG 244
           ELR++L+PYKS      CQ CGG+RLLPC  CNGSKKSVHRNHFT E VALKCMNCDEVG
Sbjct: 648 ELRQLLRPYKSLATAYTCQTCGGFRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVG 707

Query: 245 LVKCYAC 251
           LVKC  C
Sbjct: 708 LVKCPTC 714

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
FB|FBgn0051559	454	CG31559 [Drosophila melanogast	0.621	0.343	0.660	9.6e-57
FB|FBgn0029662	582	CG12206 [Drosophila melanogast	0.737	0.317	0.566	3.3e-56
UNIPROTKB|E1C085	294	GRXCR1 "Uncharacterized protei	0.605	0.517	0.402	4.4e-29
UNIPROTKB|E1BCE8	290	GRXCR1 "Uncharacterized protei	0.613	0.531	0.391	1.9e-28
UNIPROTKB|F1S3T4	290	GRXCR1 "Uncharacterized protei	0.605	0.524	0.389	3.1e-28
UNIPROTKB|A8MXD5	290	GRXCR1 "Glutaredoxin domain-co	0.605	0.524	0.396	5e-28
UNIPROTKB|E2RF60	290	GRXCR1 "Uncharacterized protei	0.605	0.524	0.389	6.4e-28
MGI|MGI:3577767	290	Grxcr1 "glutaredoxin, cysteine	0.605	0.524	0.389	1e-27
RGD|1564635	290	Grxcr1 "glutaredoxin, cysteine	0.605	0.524	0.389	1e-27
TAIR|locus:2171223	273	AT5G58530 [Arabidopsis thalian	0.733	0.673	0.301	1.6e-23

FB|FBgn0051559 CG31559 [Drosophila melanogaster (taxid:7227)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 103/156 (66%), Positives = 130/156 (83%)

Query:    96 WQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG 155
             ++EK+ GK+V+Y+T+MGI+R+TY +C  VKQILRT LVKF+++DVFMS E Q E ++R+ 
Sbjct:   299 FKEKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQ 358

Query:   156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
             +  + VPQ++VEG HIGDA+ +ER+NESGELR++LKPYKS  +   CQ CGGYRLLPC  
Sbjct:   359 SGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCPS 418

Query:   216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             CNGSKKSVHRNHFT E VALKCMNCDEVGLVKC+ C
Sbjct:   419 CNGSKKSVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454

GO:0005575 "cellular_component" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

FB|FBgn0029662 CG12206 [Drosophila melanogaster (taxid:7227)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 106/187 (56%), Positives = 140/187 (74%)

Query:    65 SRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKV 124
             ++ T +  K R+   V    Q+  +  ++  + EK+ GK+V+Y+T+MGI+RDTY +C  V
Sbjct:   398 AKGTVRGVKNRVRNGVATFLQL--QQPNVKNYMEKDVGKVVLYTTSMGIIRDTYAKCANV 455

Query:   125 KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNESG 184
             K+ILRT L+KF+++D+FMS E QQE +ER+  + I VPQ+FVEG  IGDA+ +ERLNESG
Sbjct:   456 KKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESG 515

Query:   185 ELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG 244
             ELR++L+PYKS      CQ CGGYR+LPC  CNGSKKS+HRNHFT E VALKCMNCDEVG
Sbjct:   516 ELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALKCMNCDEVG 575

Query:   245 LVKCYAC 251
             L+KC  C
Sbjct:   576 LIKCPNC 582

GO:0005575 "cellular_component" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|E1C085 GRXCR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 62/154 (40%), Positives = 99/154 (64%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--D 157
             E G+IV+Y+T++ +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER     +
Sbjct:   139 EFGRIVIYTTSLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNSDYGKELDERCRRVCE 198

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+C+
Sbjct:   199 APSLPVVFIDGHYLGGAEKILLMNESGELQDLLTKIEKVQHPHECPSCGGFGFLPCSVCH 258

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK SV RN FT    ALKC  C+E GL +C +C
Sbjct:   259 GSKMSVFRNCFTDSFKALKCTACNENGLQRCRSC 292

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0060091 "kinocilium" evidence=IEA

GO:0060118 "vestibular receptor cell development" evidence=IEA

GO:0060122 "inner ear receptor stereocilium organization" evidence=IEA

UNIPROTKB|E1BCE8 GRXCR1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 61/156 (39%), Positives = 99/156 (63%)

Query:    98 EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-- 155
             E E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    
Sbjct:   133 ELEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRV 192

Query:   156 TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSL 215
             ++  ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+
Sbjct:   193 SEAPSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSV 252

Query:   216 CNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             C+GSK SV RN FT    ALKC  C+E GL +C +C
Sbjct:   253 CHGSKMSVFRNCFTDSFKALKCTACNENGLQRCKSC 288

GO:0060122 "inner ear receptor stereocilium organization" evidence=IEA

GO:0060118 "vestibular receptor cell development" evidence=IEA

GO:0060091 "kinocilium" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|F1S3T4 GRXCR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/154 (38%), Positives = 98/154 (63%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
             E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    ++
Sbjct:   135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE 194

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+C+
Sbjct:   195 APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK SV RN FT    ALKC  C+E GL +C +C
Sbjct:   255 GSKMSVFRNCFTDSFKALKCTACNENGLQRCQSC 288

GO:0060122 "inner ear receptor stereocilium organization" evidence=IEA

GO:0060118 "vestibular receptor cell development" evidence=IEA

GO:0060091 "kinocilium" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|A8MXD5 GRXCR1 "Glutaredoxin domain-containing cysteine-rich protein 1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/154 (39%), Positives = 97/154 (62%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
             E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ E  +E  ER    ++
Sbjct:   135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSE 194

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ IL   +       C  CGG+  LPCS+C+
Sbjct:   195 APSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK S+ RN FT    ALKC  C+E GL +C  C
Sbjct:   255 GSKMSMFRNCFTDSFKALKCTACNENGLQRCKNC 288

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0060091 "kinocilium" evidence=ISS

GO:0060118 "vestibular receptor cell development" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0060119 "inner ear receptor cell development" evidence=ISS

GO:0060122 "inner ear receptor stereocilium organization" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0032420 "stereocilium" evidence=ISS

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

UNIPROTKB|E2RF60 GRXCR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/154 (38%), Positives = 97/154 (62%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
             E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    ++
Sbjct:   135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE 194

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS C+
Sbjct:   195 APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSACH 254

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK SV RN FT    ALKC  C+E GL +C +C
Sbjct:   255 GSKMSVFRNCFTDSFKALKCTACNENGLQRCKSC 288

GO:0060122 "inner ear receptor stereocilium organization" evidence=IEA

GO:0060118 "vestibular receptor cell development" evidence=IEA

GO:0060091 "kinocilium" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:3577767 Grxcr1 "glutaredoxin, cysteine rich 1" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/154 (38%), Positives = 97/154 (62%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
             E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    ++
Sbjct:   135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE 194

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+C+
Sbjct:   195 APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK SV RN FT    ALKC  C+E GL +C  C
Sbjct:   255 GSKMSVFRNCFTDAFKALKCTACNENGLQRCKNC 288

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0009055 "electron carrier activity" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0032420 "stereocilium" evidence=IDA

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IMP

GO:0048839 "inner ear development" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0060091 "kinocilium" evidence=IDA

GO:0060118 "vestibular receptor cell development" evidence=IMP

GO:0060119 "inner ear receptor cell development" evidence=IMP

GO:0060122 "inner ear receptor stereocilium organization" evidence=IMP

RGD|1564635 Grxcr1 "glutaredoxin, cysteine rich 1" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/154 (38%), Positives = 97/154 (62%)

Query:   100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TD 157
             E  ++V+Y+T + +VR T+ RC  V++I + H VKF++K++ ++ +  +E  ER    ++
Sbjct:   135 EFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSE 194

Query:   158 VINVPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCN 217
               ++P +F++G ++G A+ I  +NESGEL+ +L   +       C  CGG+  LPCS+C+
Sbjct:   195 APSLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCH 254

Query:   218 GSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             GSK SV RN FT    ALKC  C+E GL +C  C
Sbjct:   255 GSKMSVFRNCFTDAFKALKCTACNENGLQRCKNC 288

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA;ISO

GO:0042491 "auditory receptor cell differentiation" evidence=IEA;ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA;ISO

GO:0048839 "inner ear development" evidence=ISO

GO:0060091 "kinocilium" evidence=IEA;ISO

GO:0060118 "vestibular receptor cell development" evidence=IEA;ISO

GO:0060119 "inner ear receptor cell development" evidence=ISO

GO:0060122 "inner ear receptor stereocilium organization" evidence=IEA;ISO

TAIR|locus:2171223 AT5G58530 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 63/209 (30%), Positives = 109/209 (52%)

Query:    53 HLVKFDDKDVFMSRETQQEFKERLG-TDVINVPQIFVEGVHIGTWQEKEAGKIVMYSTTM 111
             HL++ D + + +SR    E   +   T      +I + G       EK    IV+Y T++
Sbjct:    72 HLLRADSEPINLSRNQNPESDSKQSKTKTEPDVRISIPGA------EKS---IVVYFTSL 122

Query:   112 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTD---------VINVP 162
              +VR T+  C  V  IL +  V+ D++D+ M      E +   G D            +P
Sbjct:   123 RVVRPTFEACKSVTSILHSFPVRIDERDLSMDASFSTELQRIFGKDQNQNQNQAKTPKLP 182

Query:   163 QIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKS 222
             ++F+ G +IG A+ +++L+E GEL+++++     +   +C++CGG+R +PC  C+GS K 
Sbjct:   183 RVFIGGRYIGGAEEVKQLHEIGELKKLVQELPKIEP-GVCEMCGGHRFVPCKDCHGSHK- 240

Query:   223 VHRNHFTTELVALKCMNCDEVGLVKCYAC 251
             VH    T +L    C+ C+E GLV+C +C
Sbjct:   241 VH----TEKLGFRTCLTCNENGLVRCSSC 265

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VNL4	GRCR1_DROME	No assigned EC number	0.6560	0.6095	0.3370	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	4e-57
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	2e-19
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	3e-15
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	9e-12
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	1e-09
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	1e-09
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	7e-08
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	6e-07
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	1e-06
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	1e-06
cd03027	73	cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishe	5e-06
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	7e-06
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	2e-05
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	6e-05
cd03027	73	cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishe	7e-05
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	1e-04
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	1e-04
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	3e-04
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	6e-04
pfam04908	92	pfam04908, SH3BGR, SH3-binding, glutamic acid-rich	0.001
PRK11200	85	PRK11200, grxA, glutaredoxin 1; Provisional	0.001

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score =  178 bits (454), Expect = 4e-57
 Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV- 161
           ++V+Y+T++  VR T+  C  V+ IL +  VKFD++DV M    ++E +E LG ++  V 
Sbjct: 1   RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVS 60

Query: 162 -PQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSK 220
            P++FV+G ++G A+ + RLNESGELR++LK  ++     +C+ CGG R +PCS CNGS 
Sbjct: 61  LPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSC 120

Query: 221 KSVHRNHFTTELVALKCMNCDEVGLVKC 248
           K    N        L+C  C+E GLV+C
Sbjct: 121 KVFAENAT-AAGGFLRCPECNENGLVRC 147

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV- 83
          ++V+Y+T++  VR T+  C  V+ IL +  VKFD++DV M    ++E +E LG ++  V 
Sbjct: 1  RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVS 60

Query: 84 -PQIFVEGVHIG 94
           P++FV+G ++G
Sbjct: 61 LPRVFVDGRYLG 72

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 68.3 bits (168), Expect = 3e-15
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 8/80 (10%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
           K+V++S +      T   C + K++L +  ++F++ D+    E ++E KE  G     VP
Sbjct: 1   KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPT--VP 52

Query: 163 QIFVEGVHIGDADAIERLNE 182
           QIF+ G  IG  D ++ L+E
Sbjct: 53  QIFINGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 58.6 bits (143), Expect = 9e-12
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
          K+V++S +      T   C + K++L +  ++F++ D+    E ++E KE  G     VP
Sbjct: 1  KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPT--VP 52

Query: 85 QIFVEGVHIG 94
          QIF+ G  IG
Sbjct: 53 QIFINGEFIG 62

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ 85
          +V+++        T   C + K++L +  VKF++ DV    E ++E KE  G     VPQ
Sbjct: 1  VVLFTKP------TCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSG--WPTVPQ 52

Query: 86 IFVEGVHI 93
          +F++G HI
Sbjct: 53 VFIDGEHI 60

Length = 60

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ 163
           +V+++        T   C + K++L +  VKF++ DV    E ++E KE  G     VPQ
Sbjct: 1   VVLFTKP------TCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSG--WPTVPQ 52

Query: 164 IFVEGVHI 171
           +F++G HI
Sbjct: 53  VFIDGEHI 60

Length = 60

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            + +Y+      +     C + K++L    V +++ DV      +     + G     VP
Sbjct: 2   NVTIYT------KPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVP 55

Query: 163 QIFVEGVHIGDADAIERLNESGEL 186
           QIF+ G H+G  D ++ L   G+L
Sbjct: 56  QIFIGGKHVGGCDDLDALEAKGKL 79

Length = 80

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ 163
           + +Y+      +     C + K +L +  V F +  V      + E  +R  +    VPQ
Sbjct: 1   VTIYT------KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQR--SGRRTVPQ 52

Query: 164 IFVEGVHIGDADAIERLNESGELRRIL 190
           IF+  VH+G  D +  L+  G+L  +L
Sbjct: 53  IFIGDVHVGGCDDLYALDREGKLDPLL 79

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 121 CLKVKQILRTHLVKFD------DKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA 174
           C K K+IL    VK        D+    S E Q   +E   T    VP IF+ G  IG  
Sbjct: 12  CKKAKEILAKLNVKPAYEVVELDQLSNGS-EIQDYLEEI--TGQRTVPNIFINGKFIGGC 68

Query: 175 DAIERLNESGELRRIL 190
             +  L +SG+L  +L
Sbjct: 69  SDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
           K+ +Y+         Y  C++ K +L    V +++ DV      ++E   R G     VP
Sbjct: 1   KVEIYTKPNC----PY--CVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVP 53

Query: 163 QIFVEGVHIGDADAIERLNESG 184
           QIF+  VHIG  D +  L   G
Sbjct: 54  QIFIGDVHIGGCDDLYALERKG 75

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
           G++ +YS      R     C  V+  LR   + + + ++ +  E + E +ER G+ V  V
Sbjct: 1   GRVTIYS------RLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSV--V 52

Query: 162 PQIFVEGVHIGDADAIERLNE 182
           PQIF     +G    ++ L E
Sbjct: 53  PQIFFNEKLVGGLTDLKSLEE 73

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Length = 73

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
          K+ +Y+         Y  C++ K +L    V +++ DV      ++E   R G     VP
Sbjct: 1  KVEIYTKPNC----PY--CVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVP 53

Query: 85 QIFVEGVHIG 94
          QIF+  VHIG
Sbjct: 54 QIFIGDVHIG 63

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
           + +Y+      +     C + K++L    V +++ DV      +     + G     VP
Sbjct: 2  NVTIYT------KPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVP 55

Query: 85 QIFVEGVHIGT 95
          QIF+ G H+G 
Sbjct: 56 QIFIGGKHVGG 66

Length = 80

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 121 CLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG--TDVINVPQIFVEGVHIGDA 174
           C + K +L+   VK      D+    S E Q   +E  G  T    VP +F+ G  IG  
Sbjct: 13  CKRAKSLLKELGVKPAVVELDQHEDGS-EIQDYLQELTGQRT----VPNVFIGGKFIGGC 67

Query: 175 DAIERLNESGELRRI 189
           D +  L++SG+L ++
Sbjct: 68  DDLMALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 83
          G++ +YS      R     C  V+  LR   + + + ++ +  E + E +ER G+ V  V
Sbjct: 1  GRVTIYS------RLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSV--V 52

Query: 84 PQIFVEGVHIG 94
          PQIF     +G
Sbjct: 53 PQIFFNEKLVG 63

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Length = 73

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 123 KVKQILRTH-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN 181
           +  QIL    +V F   DV    E +Q  KE   ++    PQ++V G  +G  D +  + 
Sbjct: 35  QAVQILSACGVVDFAYVDVLQDPEIRQGLKEY--SNWPTFPQLYVNGEFVGGCDIVREMY 92

Query: 182 ESGELRRILK 191
           +SGEL+ +LK
Sbjct: 93  QSGELQTLLK 102

Length = 105

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
           KV QIL    V F   D+    E +Q  KE   ++    PQ++V G  +G  D ++ ++E
Sbjct: 28  KVVQILNQLGVDFGTFDILEDEEVRQGLKEY--SNWPTFPQLYVNGELVGGCDIVKEMHE 85

Query: 183 SGELR 187
           SGEL+
Sbjct: 86  SGELQ 90

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 121 CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180
           C + K +L +  V F +  +      ++E  +R G     VPQIF++  HIG  D +  L
Sbjct: 15  CHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR--TTVPQIFIDAQHIGGCDDLYAL 72

Query: 181 NESGELRRILK 191
           +  G L  +LK
Sbjct: 73  DARGGLDPLLK 83

Length = 83

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ 85
          + +Y+      +     C + K +L +  V F +  V      + E  +R  +    VPQ
Sbjct: 1  VTIYT------KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQR--SGRRTVPQ 52

Query: 86 IFVEGVHIG 94
          IF+  VH+G
Sbjct: 53 IFIGDVHVG 61

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|218321 pfam04908, SH3BGR, SH3-binding, glutamic acid-rich protein

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 21/88 (23%), Positives = 36/88 (40%)

Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQ 163
           + +Y  +     +   +  +V  IL  + + FD+ D+    E ++  +E         PQ
Sbjct: 3   LKVYVASSSGSPEIKKKQQRVLMILDANKIPFDEVDITKDEEQRRWMRENPPNGAPLPPQ 62

Query: 164 IFVEGVHIGDADAIERLNESGELRRILK 191
           IF E  + GD DA     E+  L   L 
Sbjct: 63  IFNEDQYCGDYDAFFEAVEANTLYEFLG 90

Length = 92

>gnl|CDD|183036 PRK11200, grxA, glutaredoxin 1; Provisional

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 43  CLKVKQI---LRTHLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEGVHIGTWQ 97
           C++ K++   L      FD + V +  E  ++ + ++ +G  V  VPQIFV+  HIG   
Sbjct: 14  CVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCT 73

Query: 98  EKEA 101
           + EA
Sbjct: 74  DFEA 77

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	100.0
KOG2824|consensus	281		100.0
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.9
PTZ00062	204	glutaredoxin; Provisional	99.88
PRK10824	115	glutaredoxin-4; Provisional	99.87
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.86
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.85
PHA03050	108	glutaredoxin; Provisional	99.84
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.83
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.82
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.8
PRK10638	83	glutaredoxin 3; Provisional	99.8
KOG1752|consensus	104		99.76
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.76
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.74
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.74
KOG2824|consensus	281		99.73
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.69
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.69
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.67
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.64
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.63
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.62
PRK11200	85	grxA glutaredoxin 1; Provisional	99.61
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.61
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.61
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.61
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.6
PHA03050	108	glutaredoxin; Provisional	99.6
PRK10824	115	glutaredoxin-4; Provisional	99.6
KOG0911|consensus	227		99.59
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.59
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.59
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.58
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.57
PRK10638	83	glutaredoxin 3; Provisional	99.57
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.54
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.54
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.54
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.54
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.53
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.52
PRK11200	85	grxA glutaredoxin 1; Provisional	99.49
PRK10329	81	glutaredoxin-like protein; Provisional	99.49
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.48
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.46
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.45
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.42
PTZ00062	204	glutaredoxin; Provisional	99.38
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.36
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.34
KOG1752|consensus	104		99.32
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.31
PRK10329	81	glutaredoxin-like protein; Provisional	99.31
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.26
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.21
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.06
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.03
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.96
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.95
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	98.92
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	98.89
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.78
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.71
KOG0911|consensus	227		98.61
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.58
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.57
KOG4023|consensus	108		98.56
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.54
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.5
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.37
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.35
PRK12559	131	transcriptional regulator Spx; Provisional	98.35
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.35
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.29
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.28
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.26
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.19
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.17
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.17
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.14
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.13
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.08
COG1393	117	ArsC Arsenate reductase and related proteins, glut	98.06
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	97.97
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.96
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	97.91
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.91
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	97.9
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	97.89
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.89
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.88
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	97.87
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	97.83
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	97.83
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.8
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.8
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.8
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	97.79
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	97.79
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	97.77
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	97.73
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	97.68
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	97.67
PRK10026	141	arsenate reductase; Provisional	97.67
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	97.63
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.62
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	97.6
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	97.59
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.58
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	97.58
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	97.55
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	97.54
PHA02125	75	thioredoxin-like protein	97.53
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.49
PRK12559	131	transcriptional regulator Spx; Provisional	97.49
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	97.49
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	97.45
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	97.42
PRK10853	118	putative reductase; Provisional	97.41
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.36
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	97.36
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.35
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.35
KOG3029|consensus	370		97.28
PHA02125	75	thioredoxin-like protein	97.24
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.19
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.15
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.09
KOG4023|consensus	108		97.08
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.06
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.05
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	96.98
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	96.93
KOG3029|consensus	370		96.87
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	96.84
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	96.81
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	96.81
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	96.8
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	96.79
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	96.79
COG1393	117	ArsC Arsenate reductase and related proteins, glut	96.78
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	96.78
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.78
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.75
PRK10026	141	arsenate reductase; Provisional	96.73
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	96.67
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	96.67
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.65
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	96.64
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.63
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	96.63
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	96.63
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	96.62
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.61
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.59
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	96.59
PRK10853	118	putative reductase; Provisional	96.54
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.53
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	96.53
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	96.42
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	96.42
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	96.36
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.36
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	96.35
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	96.34
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	96.29
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	96.26
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	96.24
cd02947	93	TRX_family TRX family; composed of two groups: Gro	96.19
PRK10387	210	glutaredoxin 2; Provisional	96.14
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	96.13
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	96.13
PRK09481	211	sspA stringent starvation protein A; Provisional	96.09
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	95.75
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.64
PRK10387	210	glutaredoxin 2; Provisional	95.63
PHA02278	103	thioredoxin-like protein	95.63
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	95.56
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	95.55
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.55
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	95.53
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	95.51
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	95.51
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	95.47
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	95.43
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	95.4
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.39
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	95.36
PRK14300	372	chaperone protein DnaJ; Provisional	95.34
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	95.28
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	95.27
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.26
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	95.22
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.2
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	95.19
cd02947	93	TRX_family TRX family; composed of two groups: Gro	95.11
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	95.11
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	95.08
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	95.05
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	95.02
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	95.01
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	95.0
PRK10767	371	chaperone protein DnaJ; Provisional	94.99
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	94.94
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	94.94
PRK15113	214	glutathione S-transferase; Provisional	94.92
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	94.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	94.79
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	94.74
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	94.69
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	94.63
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	94.62
PHA02278	103	thioredoxin-like protein	94.58
PRK09481	211	sspA stringent starvation protein A; Provisional	94.56
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.5
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	94.5
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	94.49
PRK14285	365	chaperone protein DnaJ; Provisional	94.47
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	94.38
PTZ00051	98	thioredoxin; Provisional	94.35
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	94.31
PRK14298	377	chaperone protein DnaJ; Provisional	94.15
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	94.07
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	94.03
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	94.02
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.01
PRK14284	391	chaperone protein DnaJ; Provisional	93.96
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	93.91
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	93.91
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.81
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	93.79
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	93.78
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	93.77
PRK14282	369	chaperone protein DnaJ; Provisional	93.76
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	93.74
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	93.65
PRK14287	371	chaperone protein DnaJ; Provisional	93.64
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.6
PRK14294	366	chaperone protein DnaJ; Provisional	93.59
PRK14289	386	chaperone protein DnaJ; Provisional	93.55
PRK14301	373	chaperone protein DnaJ; Provisional	93.55
PRK14286	372	chaperone protein DnaJ; Provisional	93.43
PRK14288	369	chaperone protein DnaJ; Provisional	93.29
PRK14290	365	chaperone protein DnaJ; Provisional	93.15
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	93.15
PRK14293	374	chaperone protein DnaJ; Provisional	93.11
PRK13728	181	conjugal transfer protein TrbB; Provisional	93.03
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	93.01
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	92.99
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	92.97
KOG0406|consensus	231		92.96
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	92.96
PRK14283	378	chaperone protein DnaJ; Provisional	92.94
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	92.92
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	92.92
PRK10996	139	thioredoxin 2; Provisional	92.86
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	92.85
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	92.82
PRK14279	392	chaperone protein DnaJ; Provisional	92.74
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	92.73
PRK14297	380	chaperone protein DnaJ; Provisional	92.73
PRK14295	389	chaperone protein DnaJ; Provisional	92.72
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	92.72
PRK14280	376	chaperone protein DnaJ; Provisional	92.69
PRK09381	109	trxA thioredoxin; Provisional	92.68
KOG0910|consensus	150		92.59
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	92.58
PRK14291	382	chaperone protein DnaJ; Provisional	92.53
PRK14278	378	chaperone protein DnaJ; Provisional	92.49
PRK14296	372	chaperone protein DnaJ; Provisional	92.43
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	92.37
PRK14276	380	chaperone protein DnaJ; Provisional	92.36
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	92.31
PRK14296	372	chaperone protein DnaJ; Provisional	92.19
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	92.16
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	92.06
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	92.02
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	91.99
PRK14292	371	chaperone protein DnaJ; Provisional	91.95
PRK14285	365	chaperone protein DnaJ; Provisional	91.9
KOG0406|consensus	231		91.89
PLN02817	265	glutathione dehydrogenase (ascorbate)	91.77
PRK14282	369	chaperone protein DnaJ; Provisional	91.72
PRK14284	391	chaperone protein DnaJ; Provisional	91.68
PRK14279	392	chaperone protein DnaJ; Provisional	91.62
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	91.61
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	91.59
KOG2813|consensus	406		91.57
PRK14280	376	chaperone protein DnaJ; Provisional	91.57
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	91.56
PRK14277	386	chaperone protein DnaJ; Provisional	91.52
PRK14276	380	chaperone protein DnaJ; Provisional	91.42
PRK15113	214	glutathione S-transferase; Provisional	91.4
PLN02378	213	glutathione S-transferase DHAR1	91.39
PRK14300	372	chaperone protein DnaJ; Provisional	91.34
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	91.31
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	91.18
PRK14298	377	chaperone protein DnaJ; Provisional	91.14
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	91.14
PTZ00037	421	DnaJ_C chaperone protein; Provisional	91.14
PRK14281	397	chaperone protein DnaJ; Provisional	91.11
KOG0712|consensus	337		91.06
PRK14278	378	chaperone protein DnaJ; Provisional	91.03
PRK14286	372	chaperone protein DnaJ; Provisional	91.01
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	91.0
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	90.99
PRK14301	373	chaperone protein DnaJ; Provisional	90.95
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	90.91
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	90.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	90.89
PLN02473	214	glutathione S-transferase	90.79
KOG0907|consensus	106		90.71
PRK14277	386	chaperone protein DnaJ; Provisional	90.65
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	90.58
PRK14289	386	chaperone protein DnaJ; Provisional	90.57
PRK10767	371	chaperone protein DnaJ; Provisional	90.54
PTZ00051	98	thioredoxin; Provisional	90.42
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	90.39
PRK14297	380	chaperone protein DnaJ; Provisional	90.38
PLN02817	265	glutathione dehydrogenase (ascorbate)	90.37
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	90.37
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	90.33
PLN02378	213	glutathione S-transferase DHAR1	90.28
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	90.22
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	90.18
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.15
PRK14295	389	chaperone protein DnaJ; Provisional	90.12
PRK14294	366	chaperone protein DnaJ; Provisional	89.95
PTZ00037	421	DnaJ_C chaperone protein; Provisional	89.74
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	89.71
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	89.57
PLN02473	214	glutathione S-transferase	89.55
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	89.52
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	89.45
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	89.42
PRK14288	369	chaperone protein DnaJ; Provisional	89.31
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	89.09
PRK09381	109	trxA thioredoxin; Provisional	88.95
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	88.82
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	88.61
PRK14290	365	chaperone protein DnaJ; Provisional	88.55
PRK14287	371	chaperone protein DnaJ; Provisional	88.39
PRK14281	397	chaperone protein DnaJ; Provisional	88.37
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	88.18
PRK11752	264	putative S-transferase; Provisional	88.06
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	88.01
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	87.88
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	87.8
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	87.74
PRK10996	139	thioredoxin 2; Provisional	87.57
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	87.43
PRK14293	374	chaperone protein DnaJ; Provisional	87.36
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	87.29
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	87.21
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	87.17
PRK14283	378	chaperone protein DnaJ; Provisional	87.12
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.12
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	87.09
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	87.06
COG3019	149	Predicted metal-binding protein [General function	86.98
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	86.96
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	86.85
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	86.71
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	86.51
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	86.34
PRK14291	382	chaperone protein DnaJ; Provisional	86.27
PF11331	46	DUF3133: Protein of unknown function (DUF3133); In	86.23
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	85.98
KOG1422|consensus	221		85.78
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	85.64
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	85.62
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	85.48
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	85.41
PF10865	120	DUF2703: Domain of unknown function (DUF2703); Int	85.22
PLN02395	215	glutathione S-transferase	85.15
PRK14292	371	chaperone protein DnaJ; Provisional	85.11
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	84.89
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	84.81
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	84.77
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	84.76
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	84.72
PLN03165	111	chaperone protein dnaJ-related; Provisional	84.71
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	84.67
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	84.59
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	84.54
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	84.36
PLN02395	215	glutathione S-transferase	84.23
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	84.04
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	83.89
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	83.69
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	83.42
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	83.4
PRK10357	202	putative glutathione S-transferase; Provisional	83.16
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	83.0
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	82.94
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	82.91
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	82.87
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	82.83
PTZ00057	205	glutathione s-transferase; Provisional	82.8
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	82.8
KOG0910|consensus	150		82.42
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	82.38
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	82.36
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	82.34
PRK14873	665	primosome assembly protein PriA; Provisional	82.23
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	81.89
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	81.66
KOG1422|consensus	221		81.65
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	81.52
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	81.45
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	81.39
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	81.26
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	81.08
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	80.78
PTZ00057	205	glutathione s-transferase; Provisional	80.56
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	80.09

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=100.00  E-value=3.6e-51  Score=329.53  Aligned_cols=145  Identities=41%  Similarity=0.805  Sum_probs=136.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +|+||||||++||+|||+|.++|++|++++|+|+++||++|+++++||+++++.  .+.++|||||+|+||||+|+|++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999872  358999999999999999999999


Q ss_pred             HHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccccccc
Q psy15946        181 NESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKC  248 (251)
Q Consensus       181 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C  248 (251)
                      |++|+|+++|++++...+...|++|||.|||||+.||||+|++.++.+ .++.++||++|||||||||
T Consensus        81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~-~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT-AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc-ccccEEECCCCCccccccC
Confidence            999999999999988888889999999999999999999999877654 4577999999999999999

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG2824|consensus

Probab=100.00  E-value=2.8e-49  Score=339.84  Aligned_cols=149  Identities=39%  Similarity=0.769  Sum_probs=139.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      ..++||||+||||+||+|+++|..|++||++++|.|+|+||+||.++++||++++|.  ...++|+|||+|+||||+++|
T Consensus       129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV  208 (281)
T KOG2824|consen  129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV  208 (281)
T ss_pred             CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence            355899999999999999999999999999999999999999999999999999984  478999999999999999999


Q ss_pred             HHHHHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCcccccccCCC
Q psy15946        178 ERLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC  251 (251)
Q Consensus       178 ~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C~~C  251 (251)
                      .+|||.|+|.++|++++ ......|.+|||.||+||+.||||+|++..  +.+++.++||++||||||||||.|
T Consensus       209 ~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~--~~~~~~~~rC~~CNENGLvrCp~C  279 (281)
T KOG2824|consen  209 VRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEE--EEDDGGVLRCLECNENGLVRCPVC  279 (281)
T ss_pred             hhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeee--ccCCCcEEECcccCCCCceeCCcc
Confidence            99999999999999999 556689999999999999999999999643  456788999999999999999999

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.90  E-value=1e-23  Score=157.26  Aligned_cols=88  Identities=25%  Similarity=0.321  Sum_probs=84.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCC--CCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~--~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      |+||+||++++|++..+|+++++||++++|+|+++||++|++.+++|+++++.  +..++|||||+++||||+|++.+|+
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999863  4689999999999999999999999


Q ss_pred             HcCChhhhhc
Q psy15946        182 ESGELRRILK  191 (251)
Q Consensus       182 e~G~L~~~L~  191 (251)
                      ++|+|.++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999985

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PTZ00062 glutaredoxin; Provisional

Probab=99.88  E-value=7.2e-22  Score=167.47  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=114.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCc---cceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccccc---cc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHIG---TW   96 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~---~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~g---G~   96 (251)
                      .|..|+++|      |++|+.+..+|..+.-.   +..+.|+.+          +  +...+|.+.  -+|+.++   |.
T Consensus        20 ~vl~f~a~w------~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~--~V~~vPtfv~~~~g~~i~r~~G~   81 (204)
T PTZ00062         20 LVLYVKSSK------EPEYEQLMDVCNALVEDFPSLEFYVVNLA----------D--ANNEYGVFEFYQNSQLINSLEGC   81 (204)
T ss_pred             EEEEEeCCC------CcchHHHHHHHHHHHHHCCCcEEEEEccc----------c--CcccceEEEEEECCEEEeeeeCC
Confidence            445555776      99999999999886432   233334433          3  566789663  3444432   22


Q ss_pred             c--------------------------cccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHH
Q psy15946         97 Q--------------------------EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEF  150 (251)
Q Consensus        97 ~--------------------------~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el  150 (251)
                      +                          ....++|+||+++. --.+.|++|.+++++|++++|+|.++||..+++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l  160 (204)
T PTZ00062         82 NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREEL  160 (204)
T ss_pred             CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHH
Confidence            1                          23477999999952 11135999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCceEEECCeeeCChHHHHHHHHcCChhhhhcc
Q psy15946        151 KERLGTDVINVPQIFVEGVHIGDADAIERLNESGELRRILKP  192 (251)
Q Consensus       151 ~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~G~L~~~L~~  192 (251)
                      ++++|  ++++|||||||++|||+|+|++|+++|+|+++|..
T Consensus       161 ~~~sg--~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        161 KVYSN--WPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             HHHhC--CCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence            99997  89999999999999999999999999999999865

>PRK10824 glutaredoxin-4; Provisional

Probab=99.87  E-value=5.7e-22  Score=153.40  Aligned_cols=93  Identities=18%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      +..++|+||+++. --.+.||+|.+++++|++++++|.++|+..+++.+++|++++|  ++|+|||||||++|||+|+|.
T Consensus        12 I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg--~~TVPQIFI~G~~IGG~ddl~   88 (115)
T PRK10824         12 IAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN--WPTFPQLWVDGELVGGCDIVI   88 (115)
T ss_pred             HhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhC--CCCCCeEEECCEEEcChHHHH
Confidence            4578899999861 1223599999999999999999999999999999999999997  999999999999999999999


Q ss_pred             HHHHcCChhhhhccCC
Q psy15946        179 RLNESGELRRILKPYK  194 (251)
Q Consensus       179 ~l~e~G~L~~~L~~~~  194 (251)
                      +|+++|+|.++|+.+.
T Consensus        89 ~l~~~G~L~~lL~~~~  104 (115)
T PRK10824         89 EMYQRGELQQLIKETA  104 (115)
T ss_pred             HHHHCCCHHHHHHHHH
Confidence            9999999999997654

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.86  E-value=2.3e-21  Score=146.28  Aligned_cols=89  Identities=27%  Similarity=0.372  Sum_probs=80.8

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ...++|+||+++. .-++.||+|.+++++|++++|+|+++||..+++.+++|.+++|  +.++|+|||||++|||+|+|.
T Consensus         9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg--~~tvP~vfi~g~~iGG~ddl~   85 (97)
T TIGR00365         9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN--WPTIPQLYVKGEFVGGCDIIM   85 (97)
T ss_pred             hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC--CCCCCEEEECCEEEeChHHHH
Confidence            3567899998853 3334699999999999999999999999999999999999997  789999999999999999999


Q ss_pred             HHHHcCChhhhh
Q psy15946        179 RLNESGELRRIL  190 (251)
Q Consensus       179 ~l~e~G~L~~~L  190 (251)
                      +|+++|+|.++|
T Consensus        86 ~l~~~g~L~~~l   97 (97)
T TIGR00365        86 EMYQSGELQTLL   97 (97)
T ss_pred             HHHHCcChHHhC
Confidence            999999999876

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.85  E-value=3.2e-21  Score=145.99  Aligned_cols=88  Identities=23%  Similarity=0.275  Sum_probs=79.4

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH---HHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~---~~~el~~~~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      +..++|+||++++      ||+|.+++++|++++++|+++||+.+++   .++++.+++|  +.++|+|||+|++|||+|
T Consensus         5 i~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg--~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189         5 VSEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC--SPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             hccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC--CCCcCeEEECCEEEcCHH
Confidence            4568899999995      9999999999999999999999988755   5567777776  899999999999999999


Q ss_pred             HHHHHHHcCChhhhhccCC
Q psy15946        176 AIERLNESGELRRILKPYK  194 (251)
Q Consensus       176 ~l~~l~e~G~L~~~L~~~~  194 (251)
                      ++.+|+++|+|+++|+.+.
T Consensus        77 dl~~l~~~G~L~~~l~~~~   95 (99)
T TIGR02189        77 NVMALHISGSLVPMLKQAG   95 (99)
T ss_pred             HHHHHHHcCCHHHHHHHhC
Confidence            9999999999999997753

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=99.84  E-value=8.5e-21  Score=145.77  Aligned_cols=89  Identities=19%  Similarity=0.289  Sum_probs=81.8

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCC---ceeEEEcCC---CHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV---KFDDKDVFM---SRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v---~~~e~dv~~---~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      ...++|+||++++      ||+|.+++++|+++++   .|+++|++.   +.+.+++|.+++|  +.+||+|||+|++||
T Consensus        10 i~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG--~~tVP~IfI~g~~iG   81 (108)
T PHA03050         10 LANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG--GRTVPRIFFGKTSIG   81 (108)
T ss_pred             hccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC--CCCcCEEEECCEEEe
Confidence            3567899999995      9999999999999999   799999986   6789999999998  789999999999999


Q ss_pred             ChHHHHHHHHcCChhhhhccCCC
Q psy15946        173 DADAIERLNESGELRRILKPYKS  195 (251)
Q Consensus       173 G~d~l~~l~e~G~L~~~L~~~~~  195 (251)
                      |+|++++|+++|+|.++|+.++.
T Consensus        82 G~ddl~~l~~~g~L~~~l~~~~~  104 (108)
T PHA03050         82 GYSDLLEIDNMDALGDILSSIGV  104 (108)
T ss_pred             ChHHHHHHHHcCCHHHHHHHccc
Confidence            99999999999999999988643

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.83  E-value=3.9e-21  Score=154.98  Aligned_cols=75  Identities=36%  Similarity=0.706  Sum_probs=69.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+|||||++|+|+|||+|.+||++|++++|+|+|+||+.++++++||++++|.  ++.++|+|||+|++++|+++.
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del   77 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV   77 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence            589999999999999999999999999999999999999999999999999863  358999999999999997744

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.82  E-value=6.3e-20  Score=136.45  Aligned_cols=86  Identities=28%  Similarity=0.395  Sum_probs=77.3

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ...++|+||+++. .-...|++|.+++++|++++++|+++|+..+++.+++|.+++|  ..++|+|||+|++|||+++++
T Consensus         5 i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g--~~tvP~vfi~g~~iGG~~~l~   81 (90)
T cd03028           5 IKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN--WPTFPQLYVNGELVGGCDIVK   81 (90)
T ss_pred             hccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC--CCCCCEEEECCEEEeCHHHHH
Confidence            4567899998851 1123599999999999999999999999999999999999997  789999999999999999999


Q ss_pred             HHHHcCChh
Q psy15946        179 RLNESGELR  187 (251)
Q Consensus       179 ~l~e~G~L~  187 (251)
                      +||++|+|+
T Consensus        82 ~l~~~g~L~   90 (90)
T cd03028          82 EMHESGELQ   90 (90)
T ss_pred             HHHHcCCcC
Confidence            999999984

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.80  E-value=2.4e-19  Score=129.63  Aligned_cols=79  Identities=29%  Similarity=0.518  Sum_probs=75.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHHc
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNES  183 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~  183 (251)
                      |+||+++      +||+|.+++++|++++++|+++|++.+++.++++.+++|  ..++|+|||+|++|||++++.+|+++
T Consensus         1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g--~~~vP~i~i~g~~igg~~~~~~~~~~   72 (79)
T TIGR02181         1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG--RRTVPQIFIGDVHVGGCDDLYALDRE   72 (79)
T ss_pred             CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC--CCCcCEEEECCEEEcChHHHHHHHHc
Confidence            6899999      499999999999999999999999999999999999987  89999999999999999999999999


Q ss_pred             CChhhhh
Q psy15946        184 GELRRIL  190 (251)
Q Consensus       184 G~L~~~L  190 (251)
                      |+|+.+|
T Consensus        73 g~l~~~l   79 (79)
T TIGR02181        73 GKLDPLL   79 (79)
T ss_pred             CChhhhC
Confidence            9999876

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.80  E-value=2.9e-19  Score=130.75  Aligned_cols=82  Identities=28%  Similarity=0.513  Sum_probs=77.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+|+||+++.      |++|.+++.+|+.++++|+++||+.+++.++++.+++|  ..++|+||++|++|||++++.+|+
T Consensus         2 ~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g--~~~vP~i~~~g~~igG~~~~~~~~   73 (83)
T PRK10638          2 ANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG--RTTVPQIFIDAQHIGGCDDLYALD   73 (83)
T ss_pred             CcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEeCHHHHHHHH
Confidence            4799999994      99999999999999999999999999989999999987  789999999999999999999999


Q ss_pred             HcCChhhhhc
Q psy15946        182 ESGELRRILK  191 (251)
Q Consensus       182 e~G~L~~~L~  191 (251)
                      ++|+|.++|+
T Consensus        74 ~~g~l~~~~~   83 (83)
T PRK10638         74 ARGGLDPLLK   83 (83)
T ss_pred             HcCCHHHHhC
Confidence            9999999874

>KOG1752|consensus

Probab=99.76  E-value=2e-18  Score=131.12  Aligned_cols=88  Identities=27%  Similarity=0.399  Sum_probs=78.2

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      ...++||||++++      |++|.+++.+|.+.++.+..++++.+   .+++++|.+++|  ++++|+|||+|++|||++
T Consensus        11 i~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg--~~tvP~vFI~Gk~iGG~~   82 (104)
T KOG1752|consen   11 ISENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG--QRTVPNVFIGGKFIGGAS   82 (104)
T ss_pred             hhcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC--CCCCCEEEECCEEEcCHH
Confidence            4578899999995      99999999999999998777776543   478888888887  889999999999999999


Q ss_pred             HHHHHHHcCChhhhhccCC
Q psy15946        176 AIERLNESGELRRILKPYK  194 (251)
Q Consensus       176 ~l~~l~e~G~L~~~L~~~~  194 (251)
                      +|++||.+|+|.++|+.+.
T Consensus        83 dl~~lh~~G~L~~~l~~~~  101 (104)
T KOG1752|consen   83 DLMALHKSGELVPLLKEAG  101 (104)
T ss_pred             HHHHHHHcCCHHHHHHHhh
Confidence            9999999999999998754

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.3e-18  Score=127.48  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=83.4

Q ss_pred             cccchheeeeeeecccccCCCcchHHHHHHHHhcC-CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946         98 EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus        98 ~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      +.+.++|++|.+.. --.+.|.+..++..+|..+| ++|..+||..|++.|+.|++.++  |+|+||+||+|++|||.|.
T Consensus        11 ~i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~--WPT~PQLyi~GEfvGG~DI   87 (105)
T COG0278          11 QIKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN--WPTFPQLYVNGEFVGGCDI   87 (105)
T ss_pred             HhhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC--CCCCceeeECCEEeccHHH
Confidence            34678899999874 23356777889999999999 89999999999999999999996  9999999999999999999


Q ss_pred             HHHHHHcCChhhhhccC
Q psy15946        177 IERLNESGELRRILKPY  193 (251)
Q Consensus       177 l~~l~e~G~L~~~L~~~  193 (251)
                      +.+|+++|+|+++|+..
T Consensus        88 v~Em~q~GELq~~l~~~  104 (105)
T COG0278          88 VREMYQSGELQTLLKEA  104 (105)
T ss_pred             HHHHHHcchHHHHHHhc
Confidence            99999999999999763

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.74  E-value=7.4e-18  Score=120.16  Aligned_cols=73  Identities=27%  Similarity=0.481  Sum_probs=68.8

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++|+||+++.      |++|.+++++|++++|+|+++|+..+++.+++|.+++|  ..++|+|||||++|||+++|.+|+
T Consensus         1 ~~v~ly~~~~------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g--~~~vP~v~i~~~~iGg~~~~~~~~   72 (73)
T cd03027           1 GRVTIYSRLG------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG--SSVVPQIFFNEKLVGGLTDLKSLE   72 (73)
T ss_pred             CEEEEEecCC------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEeCHHHHHhhc
Confidence            4689999994      99999999999999999999999999999999999997  689999999999999999999987


Q ss_pred             H
Q psy15946        182 E  182 (251)
Q Consensus       182 e  182 (251)
                      +
T Consensus        73 ~   73 (73)
T cd03027          73 E   73 (73)
T ss_pred             C
Confidence            4

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.74  E-value=1.1e-17  Score=119.23  Aligned_cols=74  Identities=31%  Similarity=0.533  Sum_probs=69.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCC-CCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVI-NVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~-~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +|+||+++.      |++|.+++++|++++++|+++|++.+++.++++.+..|  .. ++|+|||+|++|||++++.+|+
T Consensus         1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~--~~~~vP~v~i~g~~igg~~~~~~~~   72 (75)
T cd03418           1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG--GRRTVPQIFIGDVHIGGCDDLYALE   72 (75)
T ss_pred             CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC--CCCccCEEEECCEEEeChHHHHHHH
Confidence            489999994      99999999999999999999999999999999999887  45 9999999999999999999999


Q ss_pred             HcC
Q psy15946        182 ESG  184 (251)
Q Consensus       182 e~G  184 (251)
                      ++|
T Consensus        73 ~~g   75 (75)
T cd03418          73 RKG   75 (75)
T ss_pred             hCc
Confidence            987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>KOG2824|consensus

Probab=99.73  E-value=4.9e-18  Score=146.85  Aligned_cols=150  Identities=27%  Similarity=0.445  Sum_probs=109.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .++.||||+|+.+|+|+|+.+|..|+++|++++|.|+|+||+.|.++++||++++|.  ...++|++||+|+++||.++.
T Consensus       129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV  208 (281)
T KOG2824|consen  129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV  208 (281)
T ss_pred             CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence            466999999999999999999999999999999999999999999999999999985  467889999999999996633


Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIE  178 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~  178 (251)
                      .                          .|...|                +|.++++    .+|+.= --.+-.||+..|.
T Consensus       209 ~--------------------------~LnE~G----------------kL~~lL~----~~p~~~~~~C~~CGg~rFlp  242 (281)
T KOG2824|consen  209 V--------------------------RLNEEG----------------KLGKLLK----GIPCEGGGVCESCGGARFLP  242 (281)
T ss_pred             h--------------------------hhhhcc----------------hHHHHHh----cCCCCCCCcCCCcCCcceEe
Confidence            2                          122222                2334433    223110 0113455555555


Q ss_pred             HHHHcCChhhhhccCCCCCCCccccccCCcceeeCCCCCC
Q psy15946        179 RLNESGELRRILKPYKSPDACTICQVCGGYRLLPCSLCNG  218 (251)
Q Consensus       179 ~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~~~~~C~~C~g  218 (251)
                      --...|.-+ +.++.........|..|+.+|++.|+.|..
T Consensus       243 C~~C~GS~k-v~~~~~~~~~~~rC~~CNENGLvrCp~Cs~  281 (281)
T KOG2824|consen  243 CSNCHGSCK-VHEEEEDDGGVLRCLECNENGLVRCPVCSN  281 (281)
T ss_pred             cCCCCCcee-eeeeccCCCcEEECcccCCCCceeCCccCC
Confidence            555555432 333333445567999999999999999963

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=7.2e-17  Score=117.47  Aligned_cols=76  Identities=29%  Similarity=0.562  Sum_probs=67.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .|+||+++      +||+|.+++++|++.|++|+++|+.+++  +.++.+++..|  ..++|+|||||++|||.+++.++
T Consensus         2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g--~~tvP~I~i~~~~igg~~d~~~~   73 (80)
T COG0695           2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKG--QRTVPQIFIGGKHVGGCDDLDAL   73 (80)
T ss_pred             CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCC--CCCcCEEEECCEEEeCcccHHHH
Confidence            58999999      4999999999999999999999998887  55555666555  89999999999999999999999


Q ss_pred             HHcCCh
Q psy15946        181 NESGEL  186 (251)
Q Consensus       181 ~e~G~L  186 (251)
                      +..|.|
T Consensus        74 ~~~~~l   79 (80)
T COG0695          74 EAKGKL   79 (80)
T ss_pred             HhhccC
Confidence            998876

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.69  E-value=1.5e-16  Score=115.51  Aligned_cols=79  Identities=32%  Similarity=0.494  Sum_probs=70.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCc--eeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVK--FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~--~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      |++|++++      ||+|.+++.+|++++++  |..++++.+   .+.++++.+.+|  ..++|+|||+|++|||++++.
T Consensus         1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g--~~~vP~v~i~g~~igg~~~~~   72 (84)
T TIGR02180         1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG--QRTVPNIFINGKFIGGCSDLL   72 (84)
T ss_pred             CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC--CCCCCeEEECCEEEcCHHHHH
Confidence            68999996      99999999999999998  888888653   556777888886  789999999999999999999


Q ss_pred             HHHHcCChhhhh
Q psy15946        179 RLNESGELRRIL  190 (251)
Q Consensus       179 ~l~e~G~L~~~L  190 (251)
                      +|+++|+|..+|
T Consensus        73 ~~~~~g~l~~~~   84 (84)
T TIGR02180        73 ALYKSGKLAELL   84 (84)
T ss_pred             HHHHcCChhhhC
Confidence            999999999876

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.67  E-value=3.9e-16  Score=112.97  Aligned_cols=79  Identities=28%  Similarity=0.454  Sum_probs=71.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +|++|++.+      ||+|.+++++|++++++|.+++++.+   .+.++++++.+|  ..++|+||++|++|||++++.+
T Consensus         1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g--~~~~P~v~~~g~~igg~~~~~~   72 (82)
T cd03419           1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG--QRTVPNVFIGGKFIGGCDDLMA   72 (82)
T ss_pred             CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC--CCCCCeEEECCEEEcCHHHHHH
Confidence            489999985      99999999999999999998887654   556788999887  8899999999999999999999


Q ss_pred             HHHcCChhhh
Q psy15946        180 LNESGELRRI  189 (251)
Q Consensus       180 l~e~G~L~~~  189 (251)
                      |.++|+|+++
T Consensus        73 ~~~~g~l~~~   82 (82)
T cd03419          73 LHKSGKLVKL   82 (82)
T ss_pred             HHHcCCccCC
Confidence            9999999764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.64  E-value=8.3e-16  Score=109.17  Aligned_cols=70  Identities=20%  Similarity=0.449  Sum_probs=63.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +|+||+++.      ||+|.+++++|++++++|+++|++.+. ..++++.++|  ..++|+|||||++|||+++|.++.
T Consensus         2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g--~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTG--AMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhC--CCCcCeEEECCEEEeCHHHHHHHh
Confidence            689999994      999999999999999999999998887 4567777776  789999999999999999998874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.63  E-value=2e-15  Score=111.19  Aligned_cols=75  Identities=24%  Similarity=0.480  Sum_probs=65.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      |+||++++      ||+|.+++++|++++     +.|+++|+..+...++++.+++|....++|+|||||++|||+++|.
T Consensus         2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~   75 (86)
T TIGR02183         2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE   75 (86)
T ss_pred             EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence            78999995      999999999999984     6799999987776778899888722379999999999999999999


Q ss_pred             HHHHcC
Q psy15946        179 RLNESG  184 (251)
Q Consensus       179 ~l~e~G  184 (251)
                      ++++++
T Consensus        76 ~~~~~~   81 (86)
T TIGR02183        76 QLVKEN   81 (86)
T ss_pred             HHHHhc
Confidence            998775

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.62  E-value=2.1e-15  Score=109.23  Aligned_cols=73  Identities=22%  Similarity=0.424  Sum_probs=65.0

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      .+.++|+||++++      |++|.++|++|+++||+|+++|++.+.+. +++.+.+|  ..++|+|||||++|||+++|.
T Consensus         5 ~~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g--~~~vP~i~i~g~~igG~~~l~   75 (79)
T TIGR02190         5 RKPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTG--ATTVPQVFIGGKLIGGSDELE   75 (79)
T ss_pred             CCCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHC--CCCcCeEEECCEEEcCHHHHH
Confidence            4567899999995      99999999999999999999999887554 56777776  899999999999999999988


Q ss_pred             HH
Q psy15946        179 RL  180 (251)
Q Consensus       179 ~l  180 (251)
                      ++
T Consensus        76 ~~   77 (79)
T TIGR02190        76 AY   77 (79)
T ss_pred             HH
Confidence            75

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.61  E-value=3.5e-15  Score=109.45  Aligned_cols=75  Identities=21%  Similarity=0.423  Sum_probs=67.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +|+||++++      |++|.+++++|++     .+++|+++|+..+....++|.++.+.+..++|+|||||++|||+++|
T Consensus         2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~   75 (85)
T PRK11200          2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF   75 (85)
T ss_pred             EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence            589999995      9999999999999     89999999999888778899998873337999999999999999999


Q ss_pred             HHHHHc
Q psy15946        178 ERLNES  183 (251)
Q Consensus       178 ~~l~e~  183 (251)
                      .++++.
T Consensus        76 ~~~~~~   81 (85)
T PRK11200         76 EAYVKE   81 (85)
T ss_pred             HHHHHH
Confidence            998765

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.61  E-value=1.3e-15  Score=114.70  Aligned_cols=88  Identities=32%  Similarity=0.455  Sum_probs=73.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC-------CCCCCCceEEECCeeeCChHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-------TDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g-------~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      |.||+||..+.++.-.+++++..||+.++|+|+++||+++++.++.+++..|       .+...+||||++++|+|++|+
T Consensus         3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~   82 (99)
T PF04908_consen    3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED   82 (99)
T ss_dssp             EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred             EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence            7899999999999999999999999999999999999999999999999983       234566899999999999999


Q ss_pred             HHHHHHcCChhhhhc
Q psy15946        177 IERLNESGELRRILK  191 (251)
Q Consensus       177 l~~l~e~G~L~~~L~  191 (251)
                      +.+++|.|+|.+.|+
T Consensus        83 f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   83 FEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHCTT-HHHHHT
T ss_pred             HHHHHhhCHHHHHhC
Confidence            999999999999885

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.61  E-value=1.6e-15  Score=114.35  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .+.++|+||+++. -.+.+||+|.+|+++|++++++|+++||..+++.++++++++  |+.++|+|||+|+++||+++.
T Consensus         9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t--g~~tvP~vfi~g~~iGG~ddl   84 (97)
T TIGR00365         9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS--NWPTIPQLYVKGEFVGGCDII   84 (97)
T ss_pred             hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh--CCCCCCEEEECCEEEeChHHH
Confidence            3578999998820 111139999999999999999999999999999999999987  578999999999999998754

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.61  E-value=1.2e-15  Score=115.42  Aligned_cols=71  Identities=20%  Similarity=0.231  Sum_probs=61.8

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHH---HHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRET---QQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~---~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      .+.++|+|||++|      ||+|.+||++|++++++|+++||+.+++.   ++++.+++  |+.++|+|||+|+++||++
T Consensus         5 i~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~t--g~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189         5 VSEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLG--CSPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             hccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhc--CCCCcCeEEECCEEEcCHH
Confidence            4568999999997      99999999999999999999999988764   34566555  6899999999999999998


Q ss_pred             cc
Q psy15946         98 EK   99 (251)
Q Consensus        98 ~~   99 (251)
                      +.
T Consensus        77 dl   78 (99)
T TIGR02189        77 NV   78 (99)
T ss_pred             HH
Confidence            64

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.60  E-value=5.4e-15  Score=103.12  Aligned_cols=72  Identities=33%  Similarity=0.608  Sum_probs=67.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      +|++|++++      |++|.+++.+|++++++|.++|+..+++.+++|.+++|  ..++|++|++|++|||++++++|++
T Consensus         1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~--~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG--WPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEecHHHHHHhhC
Confidence            488999995      99999999999999999999999999999999999987  7899999999999999999999874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PHA03050 glutaredoxin; Provisional

Probab=99.60  E-value=2.2e-15  Score=115.76  Aligned_cols=71  Identities=18%  Similarity=0.292  Sum_probs=64.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCC---ccceeeccC---CHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV---KFDDKDVFM---SRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v---~~~e~dv~~---d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      +.++|+||+++|      ||||.+||++|+++++   +|+++||+.   +.++++++.+++  |..+||+|||+|+++||
T Consensus        11 ~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t--G~~tVP~IfI~g~~iGG   82 (108)
T PHA03050         11 ANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT--GGRTVPRIFFGKTSIGG   82 (108)
T ss_pred             ccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc--CCCCcCEEEECCEEEeC
Confidence            567999999997      9999999999999999   899999987   678899999987  57899999999999999


Q ss_pred             ccccc
Q psy15946         96 WQEKE  100 (251)
Q Consensus        96 ~~~~~  100 (251)
                      +++..
T Consensus        83 ~ddl~   87 (108)
T PHA03050         83 YSDLL   87 (108)
T ss_pred             hHHHH
Confidence            97553

>PRK10824 glutaredoxin-4; Provisional

Probab=99.60  E-value=2.3e-15  Score=116.54  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .+.++|+||+++ .-...+||||.+|+++|.+++++|.++||..+++.+++|++++  |+.++|||||+|+++||+++.
T Consensus        12 I~~~~Vvvf~Kg-~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s--g~~TVPQIFI~G~~IGG~ddl   87 (115)
T PRK10824         12 IAENPILLYMKG-SPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA--NWPTFPQLWVDGELVGGCDIV   87 (115)
T ss_pred             HhcCCEEEEECC-CCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh--CCCCCCeEEECCEEEcChHHH
Confidence            467899999995 0000139999999999999999999999999999999999998  699999999999999998754

>KOG0911|consensus

Probab=99.59  E-value=3.9e-15  Score=125.73  Aligned_cols=90  Identities=27%  Similarity=0.375  Sum_probs=81.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ..++|+||.+.. --.+.|.+.+++..+|+.++|+|..+||..|++.|+.|++.+.  |+|+|||||+|+++||+|.+..
T Consensus       137 ~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd--WPTfPQlyI~GEFiGGlDIl~~  213 (227)
T KOG0911|consen  137 KAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD--WPTFPQLYVKGEFIGGLDILKE  213 (227)
T ss_pred             ccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC--CCCccceeECCEeccCcHHHHH
Confidence            367899999985 3344577778999999999999999999999999999999996  9999999999999999999999


Q ss_pred             HHHcCChhhhhcc
Q psy15946        180 LNESGELRRILKP  192 (251)
Q Consensus       180 l~e~G~L~~~L~~  192 (251)
                      |+++|+|...|+.
T Consensus       214 m~~~geL~~~l~~  226 (227)
T KOG0911|consen  214 MHEKGELVYTLKE  226 (227)
T ss_pred             HhhcccHHHHhhc
Confidence            9999999999875

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.59  E-value=1.5e-15  Score=113.20  Aligned_cols=74  Identities=22%  Similarity=0.292  Sum_probs=69.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC--CCCCCCceeeecccccccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT--DVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~--g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |+||+||.+|+|.+-..|+.++.+|++++|+|+++||+.+++.+++|++.+|.  +..++|||||+++++||+++.
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl   77 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAF   77 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHH
Confidence            89999999999999999999999999999999999999999999999999864  578999999999999998754

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.59  E-value=3.6e-15  Score=106.22  Aligned_cols=67  Identities=24%  Similarity=0.399  Sum_probs=62.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+||++++      ||+|.+|+++|++++|+|+++||..+++.++++.+++  +..++|++|++|+++||+++.
T Consensus         2 ~v~ly~~~~------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~--g~~~vP~v~i~~~~iGg~~~~   68 (73)
T cd03027           2 RVTIYSRLG------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT--GSSVVPQIFFNEKLVGGLTDL   68 (73)
T ss_pred             EEEEEecCC------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEeCHHHH
Confidence            699999997      9999999999999999999999999999999999998  468899999999999998864

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.58  E-value=4.9e-15  Score=107.32  Aligned_cols=72  Identities=21%  Similarity=0.349  Sum_probs=62.6

Q ss_pred             cccCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         19 QEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        19 ~~~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      +..+.++|+||+++|      ||+|.+||++|++++++|+++||+.+.+. +++.+++  |..++|+++++|++++|+++
T Consensus         3 ~~~~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~--g~~~vP~i~i~g~~igG~~~   73 (79)
T TIGR02190         3 QARKPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVT--GATTVPQVFIGGKLIGGSDE   73 (79)
T ss_pred             CcCCCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHH--CCCCcCeEEECCEEEcCHHH
Confidence            345678999999997      99999999999999999999999988664 5677666  68999999999999999875


Q ss_pred             c
Q psy15946         99 K   99 (251)
Q Consensus        99 ~   99 (251)
                      .
T Consensus        74 l   74 (79)
T TIGR02190        74 L   74 (79)
T ss_pred             H
Confidence            4

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.57  E-value=5.8e-15  Score=109.68  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=64.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      ..++||||+++ .-...+||+|.+|+++|++++++|+++||..+++.++++.+.+  |..++|+|||+|++++|+++.
T Consensus         6 ~~~~vvvf~k~-~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~--g~~tvP~vfi~g~~iGG~~~l   80 (90)
T cd03028           6 KENPVVLFMKG-TPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS--NWPTFPQLYVNGELVGGCDIV   80 (90)
T ss_pred             ccCCEEEEEcC-CCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh--CCCCCCEEEECCEEEeCHHHH
Confidence            56799999983 0011139999999999999999999999999999999999987  578999999999999998754

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=99.57  E-value=7.2e-15  Score=107.33  Aligned_cols=69  Identities=23%  Similarity=0.431  Sum_probs=63.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |++|+||++++      ||+|.+|+++|++++++|+++||+.+++.++++.++.  |..++|+++++|++++|+++.
T Consensus         1 m~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~--g~~~vP~i~~~g~~igG~~~~   69 (83)
T PRK10638          1 MANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS--GRTTVPQIFIDAQHIGGCDDL   69 (83)
T ss_pred             CCcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEeCHHHH
Confidence            55899999997      9999999999999999999999999998889999887  578999999999999998754

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.54  E-value=1.5e-14  Score=103.04  Aligned_cols=68  Identities=29%  Similarity=0.503  Sum_probs=61.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+||++++      ||+|.+|+++|++++++|+++||+.+++.++++.+..| ...++|+++++|+.++|+++.
T Consensus         1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~-~~~~vP~v~i~g~~igg~~~~   68 (75)
T cd03418           1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG-GRRTVPQIFIGDVHIGGCDDL   68 (75)
T ss_pred             CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC-CCCccCEEEECCEEEeChHHH
Confidence            489999997      99999999999999999999999999999999988875 333899999999999998754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.2e-14  Score=105.78  Aligned_cols=67  Identities=25%  Similarity=0.462  Sum_probs=56.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-HHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .|+|||+++      ||||.+||++|++++++|+++|++.++. .++++.+... |..++|+|||+|++++|.++
T Consensus         2 ~v~iyt~~~------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g~~tvP~I~i~~~~igg~~d   69 (80)
T COG0695           2 NVTIYTKPG------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-GQRTVPQIFIGGKHVGGCDD   69 (80)
T ss_pred             CEEEEECCC------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-CCCCcCEEEECCEEEeCccc
Confidence            689999997      9999999999999999999999998883 3334444433 78999999999999998654

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.54  E-value=1.3e-14  Score=104.65  Aligned_cols=66  Identities=26%  Similarity=0.448  Sum_probs=61.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |+||++++      ||+|.+|+++|++++++|+++||+.+++.++++.+++  |..++|+|+|+|++++|+++.
T Consensus         1 v~ly~~~~------Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~--g~~~vP~i~i~g~~igg~~~~   66 (79)
T TIGR02181         1 VTIYTKPY------CPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRS--GRRTVPQIFIGDVHVGGCDDL   66 (79)
T ss_pred             CEEEecCC------ChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHh--CCCCcCEEEECCEEEcChHHH
Confidence            68999997      9999999999999999999999999999999999887  589999999999999998754

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.54  E-value=2.4e-14  Score=98.05  Aligned_cols=60  Identities=33%  Similarity=0.597  Sum_probs=57.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      |++|++.      +|++|.+++++|++++++|+++||+.+++.+++|++++|  ..++|+|||||++|
T Consensus         1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g--~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG--VRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS--SSSSSEEEETTEEE
T ss_pred             cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC--CCccCEEEECCEEC
Confidence            6899998      599999999999999999999999999999999999997  89999999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.53  E-value=2e-14  Score=98.42  Aligned_cols=60  Identities=32%  Similarity=0.547  Sum_probs=56.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |+||++++      ||+|.+++++|++++++|+++||+.+++.++++++.+  |..++|+++++|+++
T Consensus         1 V~vy~~~~------C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~--g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPG------CPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS--GVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEESTT------SHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH--SSSSSSEEEETTEEE
T ss_pred             cEEEEcCC------CcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc--CCCccCEEEECCEEC
Confidence            79999996      9999999999999999999999999999999999998  689999999999874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.52  E-value=2.6e-14  Score=101.46  Aligned_cols=66  Identities=15%  Similarity=0.357  Sum_probs=58.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+|||+++      ||+|.+|+++|++++++|+++||+.+.+ .++++.+.  |..++|++|++|++++|+++.
T Consensus         2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~--g~~~vP~ifi~g~~igg~~~l   67 (72)
T cd03029           2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVT--GAMTVPQVFIDGELIGGSDDL   67 (72)
T ss_pred             eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHh--CCCCcCeEEECCEEEeCHHHH
Confidence            699999997      9999999999999999999999998884 55676665  688999999999999997654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.49  E-value=6.4e-14  Score=102.71  Aligned_cols=69  Identities=22%  Similarity=0.430  Sum_probs=62.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+||+++|      ||+|.+|+++|++     .+++|+++||..+....+++.++.|.+..++|+|||+|++++|+++.
T Consensus         2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~   75 (85)
T PRK11200          2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF   75 (85)
T ss_pred             EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence            799999997      9999999999999     89999999999988778889888864457899999999999998754

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.49  E-value=4.7e-14  Score=102.86  Aligned_cols=71  Identities=11%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccchhe
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKI  104 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~~V  104 (251)
                      +|+|||+++      ||+|.++|++|+++||+|+++||+.+++++++++. .  |..++|++++++..+.||++.+..+.
T Consensus         2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~--g~~~vPvv~i~~~~~~Gf~~~~l~~~   72 (81)
T PRK10329          2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q--GFRQLPVVIAGDLSWSGFRPDMINRL   72 (81)
T ss_pred             EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c--CCCCcCEEEECCEEEecCCHHHHHHH
Confidence            699999997      99999999999999999999999999999888875 3  67899999999999999998765543

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.48  E-value=1e-13  Score=129.58  Aligned_cols=86  Identities=23%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCeeeCCh
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGDA  174 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~~iGG~  174 (251)
                      |.+|+|||+++      ||+|.++|++|+++||+|+++||+.+++..+.+.+..+      .+..++|||||||++|||+
T Consensus         1 m~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf   74 (410)
T PRK12759          1 MVEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY   74 (410)
T ss_pred             CCcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence            35799999995      99999999999999999999999988755443333211      1378999999999999999


Q ss_pred             HHHHHHHHcCChhhhhccCC
Q psy15946        175 DAIERLNESGELRRILKPYK  194 (251)
Q Consensus       175 d~l~~l~e~G~L~~~L~~~~  194 (251)
                      ++++.  .+|+|..+|++.+
T Consensus        75 ~~l~~--~~g~l~~~~~~~~   92 (410)
T PRK12759         75 DNLMA--RAGEVIARVKGSS   92 (410)
T ss_pred             hHHHH--HhCCHHHHhcCCc
Confidence            99988  8999999998854

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.46  E-value=1.4e-13  Score=101.41  Aligned_cols=68  Identities=24%  Similarity=0.453  Sum_probs=58.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |+||+++|      ||+|.+|+++|+++     +++|+++|+..+...++++.+..|.+..++|+|||+|++++|+++.
T Consensus         2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl   74 (86)
T TIGR02183         2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDF   74 (86)
T ss_pred             EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHH
Confidence            79999997      99999999999998     4679999999877667888888753347999999999999998754

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.45  E-value=1.2e-13  Score=98.11  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=60.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc-cccccccccchh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV-HIGTWQEKEAGK  103 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~-~~gG~~~~~~~~  103 (251)
                      |+||++++      ||+|.+|+++|++++++|+++||..+++.++++++ +  |..++|+++++|. .++||++....+
T Consensus         1 v~ly~~~~------Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~--g~~~vP~v~~~g~~~~~G~~~~~~~~   70 (72)
T TIGR02194         1 ITVYSKNN------CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-Q--GFRQVPVIVADGDLSWSGFRPDKLKA   70 (72)
T ss_pred             CEEEeCCC------CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c--CCcccCEEEECCCcEEeccCHHHHHh
Confidence            58999996      99999999999999999999999999999998885 3  5788999999775 899998776543

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.42  E-value=4.6e-13  Score=93.23  Aligned_cols=67  Identities=30%  Similarity=0.572  Sum_probs=61.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|++|+++|      ||+|.+++.+|++++++|+++|+..+++.++++.+++  +..++|+++++|+.++|++..
T Consensus         1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~--~~~~~P~~~~~~~~igg~~~~   67 (72)
T cd02066           1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELS--GWPTVPQIFINGEFIGGYDDL   67 (72)
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEecHHHH
Confidence            489999997      9999999999999999999999999999899999887  578999999999999998654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PTZ00062 glutaredoxin; Provisional

Probab=99.38  E-value=8.4e-13  Score=112.12  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .+.++|+||++.. -....||+|++++++|++++|+|.++||..+++.++++++++  |+.++|+|||+|+++||+++.
T Consensus       110 i~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~s--g~~TvPqVfI~G~~IGG~d~l  185 (204)
T PTZ00062        110 IRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYS--NWPTYPQLYVNGELIGGHDII  185 (204)
T ss_pred             HhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHh--CCCCCCeEEECCEEEcChHHH
Confidence            3678999999920 001139999999999999999999999999999999999987  689999999999999998754

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.36  E-value=2.2e-12  Score=120.61  Aligned_cols=117  Identities=17%  Similarity=0.150  Sum_probs=82.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeeccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~~~gG~   96 (251)
                      |.+|+|||++|      ||+|.+||++|+++||+|+++||+.+++..+.+.+..+      +|..++|+|+|+|++++|+
T Consensus         1 m~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf   74 (410)
T PRK12759          1 MVEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY   74 (410)
T ss_pred             CCcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence            56899999997      99999999999999999999999988865443333211      2678999999999999999


Q ss_pred             ccccc---------hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH
Q psy15946         97 QEKEA---------GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE  145 (251)
Q Consensus        97 ~~~~~---------~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~  145 (251)
                      ++...         ..+-|+...+.-..-.++...+..+...+.-...+|+|++.|..
T Consensus        75 ~~l~~~~g~l~~~~~~~~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~  132 (410)
T PRK12759         75 DNLMARAGEVIARVKGSSLTTFSKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVT  132 (410)
T ss_pred             hHHHHHhCCHHHHhcCCcccccccccCCCccHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            76431         12333333332222346666666666666556678887766543

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.34  E-value=3e-12  Score=90.87  Aligned_cols=64  Identities=23%  Similarity=0.372  Sum_probs=57.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe-eeCChHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV-HIGDADA  176 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~-~iGG~d~  176 (251)
                      |+||+++      +|++|.+++++|++++++|+++|+..+++..+++++. |  ..++|+||++|. ++||++.
T Consensus         1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g--~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-G--FRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-C--CcccCEEEECCCcEEeccCH
Confidence            5799999      5999999999999999999999999999999998864 6  679999999775 9999774

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG1752|consensus

Probab=99.32  E-value=3.6e-12  Score=96.94  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=58.2

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      .+.++|||||+++      ||||..+|.+|.+.++.+..++++.++   +..+.+.+++  |..++|++||+|+++||.+
T Consensus        11 i~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t--g~~tvP~vFI~Gk~iGG~~   82 (104)
T KOG1752|consen   11 ISENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT--GQRTVPNVFIGGKFIGGAS   82 (104)
T ss_pred             hhcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc--CCCCCCEEEECCEEEcCHH
Confidence            4678999999997      999999999999999988777776654   3344455444  6889999999999999977


Q ss_pred             cc
Q psy15946         98 EK   99 (251)
Q Consensus        98 ~~   99 (251)
                      +.
T Consensus        83 dl   84 (104)
T KOG1752|consen   83 DL   84 (104)
T ss_pred             HH
Confidence            54

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.31  E-value=5e-12  Score=91.26  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=58.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|++|+++|      ||+|.+++++|++++++|++++++.+   .+.++++++++  |..++|++|++|++++|++..
T Consensus         1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--g~~~~P~v~~~g~~igg~~~~   70 (82)
T cd03419           1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT--GQRTVPNVFIGGKFIGGCDDL   70 (82)
T ss_pred             CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh--CCCCCCeEEECCEEEcCHHHH
Confidence            489999997      99999999999999999998888765   44567788877  688999999999999998753

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.31  E-value=6.5e-12  Score=91.52  Aligned_cols=65  Identities=14%  Similarity=0.282  Sum_probs=59.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      +|+||+++.      |++|.++|++|+++||+|+++|++.+++..++++. .|  ..++|+|++++..++|++.
T Consensus         2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g--~~~vPvv~i~~~~~~Gf~~   66 (81)
T PRK10329          2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QG--FRQLPVVIAGDLSWSGFRP   66 (81)
T ss_pred             EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC--CCCcCEEEECCEEEecCCH
Confidence            589999995      99999999999999999999999999999888876 35  7899999999999999873

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.26  E-value=1.3e-11  Score=89.36  Aligned_cols=66  Identities=29%  Similarity=0.428  Sum_probs=56.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCc--cceeeccCC---HHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVK--FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~--~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |++|+++|      ||+|.+++.+|++++++  |+.++|+.+   .+.++++.+.+  +..++|+++++|++++|+++.
T Consensus         1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~--g~~~vP~v~i~g~~igg~~~~   71 (84)
T TIGR02180         1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEIT--GQRTVPNIFINGKFIGGCSDL   71 (84)
T ss_pred             CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHh--CCCCCCeEEECCEEEcCHHHH
Confidence            68999998      99999999999999998  888888764   34456677776  578999999999999997643

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.21  E-value=3.3e-11  Score=84.33  Aligned_cols=68  Identities=24%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE  100 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~  100 (251)
                      +|++|+++|      |++|++++.+|++++++|.++|++.+++..+++.+.+  +..++|+++++|+.+.|+++..
T Consensus         1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~--~~~~vP~~~~~~~~~~g~~~~~   68 (74)
T TIGR02196         1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL--GQRGVPVIVIGHKIIVGFDPEK   68 (74)
T ss_pred             CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHh--CCCcccEEEECCEEEeeCCHHH
Confidence            489999998      9999999999999999999999999998888888887  5788999999998888876543

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.06  E-value=4.5e-10  Score=78.34  Aligned_cols=68  Identities=19%  Similarity=0.355  Sum_probs=60.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE  100 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~  100 (251)
                      .|++|+.+|      |++|.+++.+|++++++|..+|++.+.+..+++.++.  +..++|+++++|+.++|+++.+
T Consensus         1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~--~~~~vP~i~~~~~~i~g~~~~~   68 (73)
T cd02976           1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN--GYRSVPVVVIGDEHLSGFRPDK   68 (73)
T ss_pred             CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc--CCcccCEEEECCEEEecCCHHH
Confidence            489999997      9999999999999999999999999888888888875  5688999999999998877543

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.03  E-value=1.5e-09  Score=75.77  Aligned_cols=66  Identities=27%  Similarity=0.380  Sum_probs=59.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      +|++|++++      |++|.+++.+|+..+++|.++|++.+++..+++.+..|  ..++|.++++|+.++|++.
T Consensus         1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~--~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG--QRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC--CCcccEEEECCEEEeeCCH
Confidence            378999996      99999999999999999999999999888888988887  7899999999999988653

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.96  E-value=2.1e-09  Score=76.22  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-cccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGT   95 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~~gG   95 (251)
                      +|+||+++|      |++|++++.+|++++++|+.+|++.+++..+++.++.. +..++|+++++ |..+..
T Consensus         1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~-~~~~vP~i~~~~g~~l~~   65 (77)
T TIGR02200         1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNN-GNMTVPTVKFADGSFLTN   65 (77)
T ss_pred             CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhC-CCceeCEEEECCCeEecC
Confidence            589999998      99999999999999999999999999888888887742 57889999764 455544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.95  E-value=3.7e-09  Score=73.66  Aligned_cols=66  Identities=21%  Similarity=0.361  Sum_probs=59.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      .|++|++++      |++|.+++.+|+..+++|..+|++.+....+++.++.+  ..++|.|+++|+.++|++.
T Consensus         1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~--~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG--YRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC--CcccCEEEECCEEEecCCH
Confidence            378999885      99999999999999999999999988888888988875  6899999999999999774

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.6e-09  Score=79.47  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      ...+.|++|-+- +-..-.|.+..+|.++|...| ++|..+||..|++.|+.+++.+  +|.+.||++|+|+++||.|-
T Consensus        12 i~~n~VvLFMKG-tp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s--~WPT~PQLyi~GEfvGG~DI   87 (105)
T COG0278          12 IKENPVVLFMKG-TPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS--NWPTFPQLYVNGEFVGGCDI   87 (105)
T ss_pred             hhcCceEEEecC-CCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc--CCCCCceeeECCEEeccHHH
Confidence            356788998764 233336999999999999999 8999999999999999999998  79999999999999999763

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=98.89  E-value=1.7e-09  Score=81.50  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=60.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC-------CCCCCCCceeeecccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG-------TDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g-------~g~~~vP~i~i~g~~~gG~~   97 (251)
                      .|.||+++.+|++..=..++++..+|+.++|+|+++||..+++.++.|++..|       .+..-.|+||++++++|+|+
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            48899999999999999999999999999999999999999999999999874       23444589999999999987


Q ss_pred             cc
Q psy15946         98 EK   99 (251)
Q Consensus        98 ~~   99 (251)
                      +.
T Consensus        82 ~f   83 (99)
T PF04908_consen   82 DF   83 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.78  E-value=2.2e-08  Score=70.84  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=55.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh-CCCCCCCceEEE-CCeeeCCh
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL-GTDVINVPQIFV-EGVHIGDA  174 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~-g~~~~~vP~vfi-~g~~iGG~  174 (251)
                      +|+||++++      |++|.+++.+|+.++++|+.+|++.++...+++.++. +  ..++|.+++ +|+.+...
T Consensus         1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~--~~~vP~i~~~~g~~l~~~   66 (77)
T TIGR02200         1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNG--NMTVPTVKFADGSFLTNP   66 (77)
T ss_pred             CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCC--CceeCEEEECCCeEecCC
Confidence            478999996      9999999999999999999999999988888888886 4  789999976 56776643

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.71  E-value=2.6e-08  Score=69.11  Aligned_cols=57  Identities=16%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +|++|+++|      ||+|.+++.+|+++     +++|..+|++.+++    +.+.+  +..++|+++++|++.
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~--~i~~vPti~i~~~~~   63 (67)
T cd02973           2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEY--GVMSVPAIVINGKVE   63 (67)
T ss_pred             EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHc--CCcccCEEEECCEEE
Confidence            689999998      99999999999975     68899999987765    44455  567899999998764

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG0911|consensus

Probab=98.61  E-value=1.1e-07  Score=80.84  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      ..+.|+||-+.. -..--|.+.+++..+|++++++|..+||..|.+.|+.+++.+  .|.+.||+||+|+++||.|-
T Consensus       137 ~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS--dWPTfPQlyI~GEFiGGlDI  210 (227)
T KOG0911|consen  137 KAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS--DWPTFPQLYVKGEFIGGLDI  210 (227)
T ss_pred             ccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc--CCCCccceeECCEeccCcHH
Confidence            457899998762 233369999999999999999999999999999999999998  79999999999999999773

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.58  E-value=1.5e-07  Score=65.16  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      +|++|++++      |++|.+++.+|+.+     +++|..+|++.+++    +.+..|  ..++|+++|+|++++
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~--i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYG--VMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcC--CcccCEEEECCEEEE
Confidence            478999996      99999999999876     68899999877654    555665  678999999999875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.57  E-value=1.3e-07  Score=72.77  Aligned_cols=46  Identities=24%  Similarity=0.399  Sum_probs=42.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG   77 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g   77 (251)
                      |+||+.++      |++|++|+++|++++++|+++|+..++..++++.++++
T Consensus         1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~   46 (111)
T cd03036           1 LKFYEYPK------CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE   46 (111)
T ss_pred             CEEEECCC------CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence            58999996      99999999999999999999999999988888888763

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>KOG4023|consensus

Probab=98.56  E-value=1.2e-07  Score=70.21  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCeeeCChHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      .|.+|++|..+....-..-.++..+|+.+.+.|+++|+.++.+.++++.....      .+.+..||||-+.+|.|++|.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            47889999888777777788999999999999999999988877777665542      235688999999999999999


Q ss_pred             HHHHHHcCChhhhhccCCCC
Q psy15946        177 IERLNESGELRRILKPYKSP  196 (251)
Q Consensus       177 l~~l~e~G~L~~~L~~~~~~  196 (251)
                      ..+..|++-|.+.|.-++..
T Consensus        83 F~ea~E~ntl~eFL~lap~~  102 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLGLAPPP  102 (108)
T ss_pred             HHHHHHHHHHHHHHccCCCc
Confidence            99999999999999887654

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.54  E-value=3.4e-07  Score=72.65  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=42.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.++      |++|++|+++|+++||+|+++|+..++..++++.+++
T Consensus         2 i~iY~~~~------C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l   46 (131)
T PRK01655          2 VTLFTSPS------CTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL   46 (131)
T ss_pred             EEEEeCCC------ChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence            89999996      9999999999999999999999999999999998886

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.50  E-value=1.2e-06  Score=75.04  Aligned_cols=125  Identities=20%  Similarity=0.283  Sum_probs=81.8

Q ss_pred             CCeEEEEee---cCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccc
Q psy15946         23 AGKIVMYST---TMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH   92 (251)
Q Consensus        23 ~~~vvvyt~---~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~   92 (251)
                      .-.|++|++   +|      |++|+.+..+|++..     +.+..++++.+..  .++.+.+  +..++|.+.+  +|+.
T Consensus        20 ~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~--~V~~~Pt~~~f~~g~~   89 (215)
T TIGR02187        20 PVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKY--GVERVPTTIILEEGKD   89 (215)
T ss_pred             CeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHc--CCCccCEEEEEeCCee
Confidence            447889988   88      999999999987753     3444566664322  3455555  5777899865  3333


Q ss_pred             c----cccc-----------------------c---------ccchheeeeeeecccccCCCcchHHHHHHHHhc-----
Q psy15946         93 I----GTWQ-----------------------E---------KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----  131 (251)
Q Consensus        93 ~----gG~~-----------------------~---------~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----  131 (251)
                      +    .|..                       +         ...-.|++|+++|      |++|..++.+|+..     
T Consensus        90 ~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~------C~~C~~~~~~l~~l~~~~~  163 (215)
T TIGR02187        90 GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPT------CPYCPYAVLMAHKFALAND  163 (215)
T ss_pred             eEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCC------CCCcHHHHHHHHHHHHhcC
Confidence            2    1210                       0         0122456688886      99999999988765     


Q ss_pred             CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946        132 LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV  169 (251)
Q Consensus       132 ~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~  169 (251)
                      .+.+..+|+..+++    +.+..+  ..++|.+++++.
T Consensus       164 ~i~~~~vD~~~~~~----~~~~~~--V~~vPtl~i~~~  195 (215)
T TIGR02187       164 KILGEMIEANENPD----LAEKYG--VMSVPKIVINKG  195 (215)
T ss_pred             ceEEEEEeCCCCHH----HHHHhC--CccCCEEEEecC
Confidence            35566677776654    444454  778999988753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.37  E-value=3.1e-06  Score=60.53  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=57.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC--CeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE--GVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~--g~~iGG~d~l~~l~  181 (251)
                      +++|+.+      .|++|.+++.+|+.+|++|+.+++..+.....++....+  ..++|.+..+  |..+.+...+.+..
T Consensus         2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p--~~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGG--KVQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCC--CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence            5789988      499999999999999999999999877656777877764  6899999763  56777777766644


Q ss_pred             H
Q psy15946        182 E  182 (251)
Q Consensus       182 e  182 (251)
                      +
T Consensus        74 ~   74 (77)
T cd03041          74 F   74 (77)
T ss_pred             H
Confidence            3

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.35  E-value=1.3e-06  Score=62.47  Aligned_cols=56  Identities=14%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++||+.++      ||+|.+++.+|+.++++|+.+++..+....+++.+..  +...+|++..+
T Consensus         2 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~--p~~~vP~l~~~   57 (77)
T cd03041           2 LELYEFEG------SPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG--GKVQVPYLVDP   57 (77)
T ss_pred             ceEecCCC------CchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC--CCCcccEEEeC
Confidence            68999996      9999999999999999999999987765667887764  56789998653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.35  E-value=1.5e-06  Score=68.99  Aligned_cols=45  Identities=27%  Similarity=0.492  Sum_probs=42.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.++      |+.|++|+++|++++++|+++|+..++...+++.+++
T Consensus         2 i~iY~~~~------C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l   46 (131)
T PRK12559          2 VVLYTTAS------CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL   46 (131)
T ss_pred             EEEEeCCC------ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence            89999996      9999999999999999999999999998888888886

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.35  E-value=4.3e-07  Score=69.00  Aligned_cols=46  Identities=24%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG   77 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g   77 (251)
                      |+||++++      |++|++|+++|++++++|+++|+..++...++|.++++
T Consensus         1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~   46 (105)
T cd02977           1 ITIYGNPN------CSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA   46 (105)
T ss_pred             CEEEECCC------CHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence            58999996      99999999999999999999999998888889988874

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.29  E-value=1.1e-06  Score=66.99  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=42.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.++      |+.|++|+++|++++++|+++|+..++-..+++.+++
T Consensus         1 i~iy~~~~------C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l   45 (105)
T cd03035           1 ITLYGIKN------CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL   45 (105)
T ss_pred             CEEEeCCC------CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence            58999996      9999999999999999999999999998888888876

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.28  E-value=4.5e-06  Score=64.59  Aligned_cols=45  Identities=33%  Similarity=0.612  Sum_probs=41.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |++|++|+++|+++|++|+++|+..++...+++.+++
T Consensus         2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~   46 (115)
T cd03032           2 IKLYTSPS------CSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL   46 (115)
T ss_pred             EEEEeCCC------CHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence            78999996      9999999999999999999999999988888888776

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.26  E-value=2.8e-06  Score=67.50  Aligned_cols=45  Identities=22%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |+.|++|+++|++++|+|+++|+..++...+++.+++
T Consensus         2 i~iY~~~~------C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTISS------CTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeCCC------CHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            88999996      9999999999999999999999999888888887775

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.19  E-value=1e-05  Score=57.50  Aligned_cols=68  Identities=26%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC----CeeeCChHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE----GVHIGDADAIE  178 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~----g~~iGG~d~l~  178 (251)
                      ++.+|+..      .|++|.+++.+|+.+|++|++++++..  .+.++ +..+  ..++|.++++    |..+.+...+.
T Consensus         1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~-~~~~--~~~vP~l~~~~~~~~~~l~eS~~I~   69 (77)
T cd03040           1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEI-KWSS--YKKVPILRVESGGDGQQLVDSSVII   69 (77)
T ss_pred             CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCch--hHHHH-HHhC--CCccCEEEECCCCCccEEEcHHHHH
Confidence            47889988      499999999999999999999998542  34444 3443  6899999987    67787777766


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        70 ~yL   72 (77)
T cd03040          70 STL   72 (77)
T ss_pred             HHH
Confidence            543

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.17  E-value=1.2e-05  Score=56.29  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLN  181 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~  181 (251)
                      .+|+..+      |++|.+++.+|...|++|+++++...... . ..+..+  ..++|.++++ |..+++...+.+..
T Consensus         2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~--~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMIG--AKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhcC--CCccCEEEeCCCeEeehHHHHHHHH
Confidence            4788774      99999999999999999999988754322 2 234443  6789999997 88999988877654

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.17  E-value=6e-06  Score=58.66  Aligned_cols=54  Identities=28%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      +++||+.+.      ||+|++++.+|+.++++|++++++.  ....++. ..  +...+|+++++
T Consensus         1 ~i~Ly~~~~------~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~--~~~~vP~l~~~   54 (77)
T cd03040           1 KITLYQYKT------CPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WS--SYKKVPILRVE   54 (77)
T ss_pred             CEEEEEcCC------CHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-Hh--CCCccCEEEEC
Confidence            588999996      9999999999999999999998853  3344553 33  56789999886

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.14  E-value=7.1e-06  Score=55.66  Aligned_cols=68  Identities=21%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+|+..      .|++|.+++.+|+..+++|+.+++..+.....++++..+  ..++|.++++|..+++...+.+.
T Consensus         2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNP--LGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCC--CCCCCEEEECCEEEEcHHHHHHH
Confidence            467777      499999999999999999999988755433335666664  78999999999999988776553

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.13  E-value=4e-06  Score=65.02  Aligned_cols=45  Identities=20%  Similarity=0.329  Sum_probs=41.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.++      |++|++|+++|++++++|+++|+..++..++++.+++
T Consensus         1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~   45 (117)
T TIGR01617         1 IKVYGSPN------CTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL   45 (117)
T ss_pred             CEEEeCCC------CHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence            57999996      9999999999999999999999999998888888776

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.08  E-value=3.9e-06  Score=56.99  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ++|+.++      ||+|.+++.+|+.++++|+.++++.+.....++++..  +..++|.+..+|..+..
T Consensus         2 ~ly~~~~------~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~e   62 (71)
T cd00570           2 KLYYFPG------SPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALN--PLGKVPVLEDGGLVLTE   62 (71)
T ss_pred             EEEeCCC------CccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcC--CCCCCCEEEECCEEEEc
Confidence            6899996      9999999999999999999999876654333566655  57789999998765543

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=98.06  E-value=2.5e-05  Score=60.78  Aligned_cols=102  Identities=16%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccchhe
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAGKI  104 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~~V  104 (251)
                      .|+||+.+      .|.-|++|+++|+++||+|+++|+..++-.++++.+++.                           
T Consensus         2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~---------------------------   48 (117)
T COG1393           2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILS---------------------------   48 (117)
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH---------------------------
Confidence            58999999      599999999999999999999999998888888887762                           


Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-CHHHHHHHHHHhCC-CCCCCceEEECC-eeeCC
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SRETQQEFKERLGT-DVINVPQIFVEG-VHIGD  173 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~~~~~~el~~~~g~-~~~~vP~vfi~g-~~iGG  173 (251)
                                  .....  ++.++...+-.|.+.+++. +-...+.+..++.. .-..-|.|+-+| -.||=
T Consensus        49 ------------~~g~~--~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG~  106 (117)
T COG1393          49 ------------KLGDG--VEELINTRGTTYRELNLDKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVGF  106 (117)
T ss_pred             ------------HcCcc--HHHHHHhccchHHHcCCcccccChHHHHHHHHhChhhccCCeEEeCCceEecC
Confidence                        01111  5667777777777776442 22222333333321 123448888777 56764

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=97.97  E-value=7.5e-06  Score=62.99  Aligned_cols=46  Identities=24%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+++      .|++|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~   46 (111)
T cd03036           1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE   46 (111)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence            5799999      599999999999999999999999988888888877765

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.96  E-value=2.4e-05  Score=56.71  Aligned_cols=53  Identities=23%  Similarity=0.509  Sum_probs=42.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcC----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +|++||+++      |+-|..|+++|+...    +.++.+||+.+++    +.+..+   ..+|++.++|
T Consensus         1 ~l~l~~k~~------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~---~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKPG------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG---YRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-SS------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC---TSTSEEEETT
T ss_pred             CEEEEcCCC------CChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc---CCCCEEEEcC
Confidence            589999996      999999999999743    6689999998887    555653   4699999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=97.91  E-value=2.5e-05  Score=54.73  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-ccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVH   92 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~   92 (251)
                      ++|+.++      ||+|.+++.+|+.++++|+.++++.... .++++++.  ...++|++..+ |..
T Consensus         2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~n--p~~~vP~L~~~~g~~   59 (71)
T cd03060           2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKNK-PAEMLAAS--PKGTVPVLVLGNGTV   59 (71)
T ss_pred             EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHC--CCCCCCEEEECCCcE
Confidence            6899997      9999999999999999999988876432 35677664  56789999885 544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.91  E-value=1.5e-05  Score=61.63  Aligned_cols=45  Identities=13%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |+.|++|+++|++++++|+++|+..++-..+++.+++
T Consensus         2 i~iy~~p~------C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l   46 (113)
T cd03033           2 IIFYEKPG------CANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF   46 (113)
T ss_pred             EEEEECCC------CHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence            78999995      9999999999999999999999999988888888876

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=97.90  E-value=1.1e-05  Score=61.25  Aligned_cols=46  Identities=24%  Similarity=0.340  Sum_probs=41.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+++      +|++|.+++++|+++|++|+++|+..++...++|.++++
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~   46 (105)
T cd02977           1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA   46 (105)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence            5789999      599999999999999999999999988877888888875

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=97.89  E-value=2.9e-05  Score=54.28  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-cccccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGT   95 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~~gG   95 (251)
                      ++|+.++      ||+|.+++-+|..+|++|+.++++..... .. .+..  +..++|+++.+ |..+.+
T Consensus         2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~--~~~~vP~L~~~~~~~l~e   61 (71)
T cd03037           2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMI--GAKQVPILEKDDGSFMAE   61 (71)
T ss_pred             ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhc--CCCccCEEEeCCCeEeeh
Confidence            5899886      99999999999999999999988765432 22 3344  46689999886 555444

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.89  E-value=4.5e-05  Score=60.09  Aligned_cols=46  Identities=11%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .|+||+.+.      |.-|++|+++|+++|++|+++|+..++-..+++.+++
T Consensus         2 ~i~iY~~p~------Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l   47 (126)
T TIGR01616         2 TIIFYEKPG------CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF   47 (126)
T ss_pred             eEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence            588999995      9999999999999999999999999888888888876

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.88  E-value=3.1e-05  Score=55.19  Aligned_cols=55  Identities=18%  Similarity=0.372  Sum_probs=42.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHH----cC--CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +|++|+++|      |++|..++..|++    ++  +.+..+|++.+++..    +.+  +..++|+++++|+
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~--~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEY--GIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHc--CCccCCEEEECCE
Confidence            589999998      9999999999875    23  567788887776532    334  5677999999875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.87  E-value=5e-05  Score=55.79  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIE  178 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~  178 (251)
                      ..+.+.+|+..      .|++|.+++.+|+..|++|+.++++... ..+++.+...  ...+|.+.++ |..+.....+.
T Consensus        15 ~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np--~~~vPvL~~~~g~~l~eS~aI~   85 (89)
T cd03055          15 VPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNP--QGKVPALEIDEGKVVYESLIIC   85 (89)
T ss_pred             CCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCC--CCCcCEEEECCCCEEECHHHHH
Confidence            35678999988      5999999999999999999999886542 2345666654  6789999998 78887766665


Q ss_pred             HH
Q psy15946        179 RL  180 (251)
Q Consensus       179 ~l  180 (251)
                      +.
T Consensus        86 ~y   87 (89)
T cd03055          86 EY   87 (89)
T ss_pred             Hh
Confidence            54

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=97.83  E-value=8.5e-05  Score=51.82  Aligned_cols=69  Identities=16%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +++|+..      +|++|.+++.+|+..|++|++++++... ...++++...  ...+|.+..+|..+.+...+.+..
T Consensus         1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~yL   69 (73)
T cd03059           1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNP--YGTVPTLVDRDLVLYESRIIMEYL   69 (73)
T ss_pred             CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCC--CCCCCEEEECCEEEEcHHHHHHHH
Confidence            3678877      5999999999999999999998886542 2356666653  679999988888777766665543

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.83  E-value=5.7e-05  Score=55.48  Aligned_cols=61  Identities=16%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-ccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVH   92 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g~~   92 (251)
                      ...+++|+.+.      ||+|.+++.+|+.++++|+.++++.... .+++.+..  ....+|++.++ |..
T Consensus        16 ~~~~~Ly~~~~------sp~~~kv~~~L~~~gl~~~~~~v~~~~~-~~~~~~~n--p~~~vPvL~~~~g~~   77 (89)
T cd03055          16 PGIIRLYSMRF------CPYAQRARLVLAAKNIPHEVININLKDK-PDWFLEKN--PQGKVPALEIDEGKV   77 (89)
T ss_pred             CCcEEEEeCCC------CchHHHHHHHHHHcCCCCeEEEeCCCCC-cHHHHhhC--CCCCcCEEEECCCCE
Confidence            45799999995      9999999999999999999998875432 24566654  46789999987 443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.80  E-value=4.2e-05  Score=56.55  Aligned_cols=59  Identities=22%  Similarity=0.332  Sum_probs=46.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .-+|.+|+++|      |++|..+++++++.     ++.|..+|++..++.    .+.+  +..++|.++++|+..
T Consensus        13 pv~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~----a~~~--~V~~vPt~vidG~~~   76 (89)
T cd03026          13 PINFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDE----VEER--GIMSVPAIFLNGELF   76 (89)
T ss_pred             CEEEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHH----HHHc--CCccCCEEEECCEEE
Confidence            34899999997      99999999998874     588899998877653    3344  567899999998654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.80  E-value=4.6e-05  Score=58.70  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |.-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus         1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHNPR------CSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEECCC------CHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            57999995      9999999999999999999999988887777777665

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.80  E-value=5.7e-05  Score=53.97  Aligned_cols=55  Identities=24%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHH----HHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~----k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .|.+|+ +|      ||+|+.+    ++++++++++++.++|+. .+   +..+ .  +..++|.++++|+.+
T Consensus         2 ~i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-~~---~a~~-~--~v~~vPti~i~G~~~   60 (76)
T TIGR00412         2 KIQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTD-MN---EILE-A--GVTATPGVAVDGELV   60 (76)
T ss_pred             EEEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCC-HH---HHHH-c--CCCcCCEEEECCEEE
Confidence            467777 87      9999999    667777888888888883 22   2333 3  678899999988544

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=97.79  E-value=3.8e-05  Score=53.63  Aligned_cols=56  Identities=18%  Similarity=0.146  Sum_probs=43.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +++|+.++      ||+|.+++.+|+.+|++|++++++.... ..++++..  ...++|++..+|
T Consensus         1 ~~ly~~~~------~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~--p~~~vP~l~~~~   56 (73)
T cd03059           1 MTLYSGPD------DVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELN--PYGTVPTLVDRD   56 (73)
T ss_pred             CEEEECCC------ChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhC--CCCCCCEEEECC
Confidence            37899996      9999999999999999999988875422 35666664  456899886654

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=97.79  E-value=3.9e-05  Score=60.83  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=41.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+++      .|++|.+++++|+++||+|+++|+..++..+++|.++..
T Consensus         2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~   47 (131)
T PRK01655          2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR   47 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence            7899999      599999999999999999999999999888888877764

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=97.77  E-value=0.00011  Score=51.35  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~  179 (251)
                      ++|+..+      |++|.+++.+|+.+|++|+.++++... ..+++.+...  ..++|.+..+ |..+.....+.+
T Consensus         2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np--~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKN-KPAEMLAASP--KGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCC--CCCCCEEEECCCcEEecHHHHHH
Confidence            5788885      999999999999999999999886542 2356777654  7899999986 887766555443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=8.7e-05  Score=52.53  Aligned_cols=60  Identities=15%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh----------CCCCCCCCceeeec
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL----------GTDVINVPQIFVEG   90 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~----------g~g~~~vP~i~i~g   90 (251)
                      +-++|.+..      ||+|..+++.|+++++.|+++||..+...++++..+-          +.|+..+|.+.+++
T Consensus         3 kp~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d   72 (85)
T COG4545           3 KPKLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD   72 (85)
T ss_pred             Cceeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC
Confidence            348888885      9999999999999999999999988877666655431          23667788887654

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.68  E-value=7e-05  Score=52.46  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +++|+.++      |++|.+++-+|+.+|++|+.++++.  .....+++.+..  ....+|.+..+|.
T Consensus         1 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~   60 (74)
T cd03045           1 IDLYYLPG------SPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN--PQHTVPTLVDNGF   60 (74)
T ss_pred             CEEEeCCC------CCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC--cCCCCCEEEECCE
Confidence            36899996      9999999999999999999988764  333456777765  4567999977643

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=97.67  E-value=5.3e-05  Score=52.75  Aligned_cols=55  Identities=15%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++|+.++      |++|.+++-+|+.++++|+.+.++...  ...+++.+..  ...++|++.++
T Consensus         2 ~Ly~~~~------s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~l~~~   58 (74)
T cd03051           2 KLYDSPT------APNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN--PAGTVPVLELD   58 (74)
T ss_pred             EEEeCCC------CcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC--CCCCCCEEEeC
Confidence            7899996      999999999999999999988876432  2345677665  46789999874

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PRK10026 arsenate reductase; Provisional

Probab=97.67  E-value=7.2e-05  Score=60.05  Aligned_cols=48  Identities=10%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |.+|+||+.+.      |.-|++|+++|++++++|+++|+..++-..+++..++
T Consensus         1 m~~i~iY~~p~------Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l   48 (141)
T PRK10026          1 MSNITIYHNPA------CGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI   48 (141)
T ss_pred             CCEEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence            45799999995      9999999999999999999999999888888888876

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=97.63  E-value=0.0001  Score=57.16  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |.||+.+      +|++|.+++++|+++|++|+++|+..++..+++|.++..
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~   46 (117)
T TIGR01617         1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS   46 (117)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence            5689888      699999999999999999999999998888888877764

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.62  E-value=0.00042  Score=50.09  Aligned_cols=53  Identities=23%  Similarity=0.524  Sum_probs=43.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcC----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG  168 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g  168 (251)
                      +|++|++.      .|+-|..++.+|+...    +.++.+||..|++    +.+..+   ..+|.+.++|
T Consensus         1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~---~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG---YRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC---TSTSEEEETT
T ss_pred             CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc---CCCCEEEEcC
Confidence            47899999      5999999999999654    5688999997766    666775   6899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=97.60  E-value=0.00021  Score=49.63  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~  179 (251)
                      .+|+..      .|++|.+++.+|...+++|+.++++..  .....++.+...  ...+|.+.+ +|..+.....+.+
T Consensus         2 ~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~~l~es~aI~~   71 (74)
T cd03051           2 KLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP--AGTVPVLELDDGTVITESVAICR   71 (74)
T ss_pred             EEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC--CCCCCEEEeCCCCEEecHHHHHH
Confidence            578877      499999999999999999998887643  233456777764  679999987 5566665555443

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=97.59  E-value=0.00012  Score=56.66  Aligned_cols=46  Identities=33%  Similarity=0.622  Sum_probs=40.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |.||+.+      .|+.|.+++++|+++|++|+++|+..++..+++|.+.+.
T Consensus         2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~   47 (115)
T cd03032           2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS   47 (115)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence            6799988      599999999999999999999999888777777777764

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.58  E-value=6.6e-05  Score=57.66  Aligned_cols=56  Identities=29%  Similarity=0.600  Sum_probs=43.3

Q ss_pred             CCCCCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCcccccccCCC
Q psy15946        195 SPDACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVKCYAC  251 (251)
Q Consensus       195 ~~~~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~C~~C  251 (251)
                      +......|..|.|.|...|+.|+|+-.++.... .......+|+.|+-.|.+.|+.|
T Consensus        37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk~~C~~C   92 (111)
T PLN03165         37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGSLTCTTC   92 (111)
T ss_pred             hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcceeeCCCC
Confidence            344678999999999999999999977652211 11224679999999999999988

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.58  E-value=0.00014  Score=50.61  Aligned_cols=59  Identities=19%  Similarity=0.255  Sum_probs=45.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +++|+.+.      |++|.+++-+|+.++++|++++++..  ....+++.+..  ...++|.+..+|..
T Consensus         1 ~~Ly~~~~------~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~~   61 (73)
T cd03056           1 MKLYGFPL------SGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN--PNGEVPVLELDGRV   61 (73)
T ss_pred             CEEEeCCC------CccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC--CCCCCCEEEECCEE
Confidence            36899996      99999999999999999999988642  23345666654  45679999876543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=97.55  E-value=0.00023  Score=50.35  Aligned_cols=68  Identities=21%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      +|+..      .|++|.+++-+|+.+|++|+.+++..... ..++.++.+  ..++|.+..+|..+.+...+.+..+
T Consensus         1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p--~~~vPvL~~~g~~l~dS~~I~~yL~   68 (75)
T PF13417_consen    1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP--KGKVPVLVDDGEVLTDSAAIIEYLE   68 (75)
T ss_dssp             EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST--TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred             CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc--cccceEEEECCEEEeCHHHHHHHHH
Confidence            46666      49999999999999999999999875533 677777765  7899999999999998887766543

...

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.54  E-value=0.0004  Score=48.54  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+|+..      .|++|.+++.+|+..|++|+.++++.  ......++.+...  ...+|.+..+|..+-....+.+
T Consensus         2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~   70 (74)
T cd03045           2 DLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP--QHTVPTLVDNGFVLWESHAILI   70 (74)
T ss_pred             EEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc--CCCCCEEEECCEEEEcHHHHHH
Confidence            578887      49999999999999999999988764  3334567777654  6789999888877766655554

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PHA02125 thioredoxin-like protein

Probab=97.53  E-value=0.00017  Score=51.18  Aligned_cols=52  Identities=17%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      |++|+++|      |++|+.++.+|++..  |..++|+.+..  .++.+.+  +..++|++. +|
T Consensus         2 iv~f~a~w------C~~Ck~~~~~l~~~~--~~~~~vd~~~~--~~l~~~~--~v~~~PT~~-~g   53 (75)
T PHA02125          2 IYLFGAEW------CANCKMVKPMLANVE--YTYVDVDTDEG--VELTAKH--HIRSLPTLV-NT   53 (75)
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHh--heEEeeeCCCC--HHHHHHc--CCceeCeEE-CC
Confidence            89999998      999999999998654  44555554442  3455555  567899987 44

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.49  E-value=0.00048  Score=48.96  Aligned_cols=55  Identities=20%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh----cC--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV  169 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~  169 (251)
                      .|++|++++      |++|..++.+|++    ++  +.+..+|+..+++    +.+..|  ...+|.++++|+
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYG--IMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcC--CccCCEEEECCE
Confidence            478999986      9999999999864    33  5667788776654    334454  678999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=97.49  E-value=0.00014  Score=57.68  Aligned_cols=46  Identities=26%  Similarity=0.495  Sum_probs=40.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+.+      .|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~   47 (131)
T PRK12559          2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR   47 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence            7899999      599999999999999999999999888777777777753

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=97.49  E-value=0.00013  Score=57.88  Aligned_cols=45  Identities=22%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      |+||+.+      +|+.|.+++++|+++||+|+++|+..++-..++|.++.
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            6899988      59999999999999999999999988776666666665

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=97.45  E-value=0.00014  Score=55.43  Aligned_cols=46  Identities=15%  Similarity=0.186  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+.+      +|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus         1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~   46 (105)
T cd03035           1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA   46 (105)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence            5789998      599999999999999999999999888777777777664

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.42  E-value=0.00075  Score=46.81  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+|+..      .|++|.+++.+|+..|++|++++++..  .....++.+...  ..++|.+..+|..+.....+.+
T Consensus         2 ~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~i~es~aI~~   70 (73)
T cd03056           2 KLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP--NGEVPVLELDGRVLAESNAILV   70 (73)
T ss_pred             EEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC--CCCCCEEEECCEEEEcHHHHHH
Confidence            577777      499999999999999999999988643  234466666653  6789999999988877655544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK10853 putative reductase; Provisional

Probab=97.41  E-value=0.00022  Score=55.54  Aligned_cols=45  Identities=9%  Similarity=0.150  Sum_probs=41.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |.-|++|+++|++++++|+.+|+..++-..+++.+++
T Consensus         2 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l   46 (118)
T PRK10853          2 VTLYGIKN------CDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI   46 (118)
T ss_pred             EEEEcCCC------CHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence            78999995      9999999999999999999999998887788888776

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.36  E-value=0.00023  Score=54.96  Aligned_cols=45  Identities=9%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||+.+.      |+-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus         1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l   45 (114)
T TIGR00014         1 VTIYHNPR------CSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF   45 (114)
T ss_pred             CEEEECCC------CHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence            57999995      9999999999999999999999999887778887776

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=97.36  E-value=0.00026  Score=50.14  Aligned_cols=57  Identities=18%  Similarity=0.155  Sum_probs=46.3

Q ss_pred             EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +|+.++      ||+|++++-+|+.++++|+..++..... .+++.+..  ...++|++..+|..+
T Consensus         1 Ly~~~~------Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~--p~~~vPvL~~~g~~l   57 (75)
T PF13417_consen    1 LYGFPG------SPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN--PKGKVPVLVDDGEVL   57 (75)
T ss_dssp             EEEETT------SHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS--TTSBSSEEEETTEEE
T ss_pred             CCCcCC------ChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc--ccccceEEEECCEEE
Confidence            688886      9999999999999999999999875543 56677765  577899998765544

...

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.35  E-value=0.00022  Score=55.08  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+.+      .|+.|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus         2 i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~   47 (113)
T cd03033           2 IIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG   47 (113)
T ss_pred             EEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence            7899999      699999999999999999999999887766677766653

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.35  E-value=0.0023  Score=62.34  Aligned_cols=122  Identities=14%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee---ccc----
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE---GVH----   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~---g~~----   92 (251)
                      .+++|+.+      +|++|.+++++|++.     .|.++++|...+.+..+    .+  +...+|.+.+-   |..    
T Consensus       369 ~l~~~~~~------~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~----~~--~v~~~P~~~i~~~~~~~~~i~  436 (555)
T TIGR03143       369 TLLLFLDG------SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESET----LP--KITKLPTVALLDDDGNYTGLK  436 (555)
T ss_pred             EEEEEECC------CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHh----hc--CCCcCCEEEEEeCCCcccceE
Confidence            45667776      499999999999873     36677777766655333    33  34467888763   221    


Q ss_pred             ----cccc-------------------cc---------ccchheeeeeeecccccCCCcchHHHHHHHH----hc-CCce
Q psy15946         93 ----IGTW-------------------QE---------KEAGKIVMYSTTMGIVRDTYHRCLKVKQILR----TH-LVKF  135 (251)
Q Consensus        93 ----~gG~-------------------~~---------~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~----~~-~v~~  135 (251)
                          ..|+                   ++         ...-.|.+|.+.      +|++|-++.+.++    .+ +|..
T Consensus       437 f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~  510 (555)
T TIGR03143       437 FHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEA  510 (555)
T ss_pred             EEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceE
Confidence                0110                   00         112246777777      5999998777553    33 6888


Q ss_pred             eEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCee
Q psy15946        136 DDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH  170 (251)
Q Consensus       136 ~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~  170 (251)
                      +.+|+...++    +.+..+  ...+|.+||||+.
T Consensus       511 ~~i~~~~~~~----~~~~~~--v~~vP~~~i~~~~  539 (555)
T TIGR03143       511 EMIDVSHFPD----LKDEYG--IMSVPAIVVDDQQ  539 (555)
T ss_pred             EEEECcccHH----HHHhCC--ceecCEEEECCEE
Confidence            8899876644    444444  7899999999963

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3029|consensus

Probab=97.28  E-value=0.00042  Score=61.04  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=71.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc-------
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ-------   97 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~-------   97 (251)
                      ++++|-..      |||+|-++|.+|+-++++|..++|+  |-.+++++ .+  ....||.+.++|+.+...+       
T Consensus        90 ~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~S--sykKVPil~~~Geqm~dSsvIIs~la  158 (370)
T KOG3029|consen   90 DLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WS--SYKKVPILLIRGEQMVDSSVIISLLA  158 (370)
T ss_pred             eEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-cc--ccccccEEEeccceechhHHHHHHHH
Confidence            89999999      6999999999999999999987775  66667776 33  5788999999887543311       


Q ss_pred             ------cccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcC
Q psy15946         98 ------EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF  141 (251)
Q Consensus        98 ------~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~  141 (251)
                            ..+.+.++-|.-..   .-+-++-+.+..++.++=+-+.|.|-.
T Consensus       159 TyLq~~~q~l~eiiq~yPa~---~~~ne~GK~v~~~~NKyflM~~e~d~~  205 (370)
T KOG3029|consen  159 TYLQDKRQDLGEIIQMYPAT---SFFNEDGKEVNDILNKYFLMYREHDPG  205 (370)
T ss_pred             HHhccCCCCHHHHHHhcccc---ccccccccchhhcchhheeeeeccCCC
Confidence                  12233343333221   012345567777888877777777753

>PHA02125 thioredoxin-like protein

Probab=97.24  E-value=0.00098  Score=47.27  Aligned_cols=53  Identities=17%  Similarity=0.249  Sum_probs=38.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~  169 (251)
                      |++|+++|      |+.|..++.+|++..+  ...+|+.+.  ..++.+..+  ...+|.+. +|+
T Consensus         2 iv~f~a~w------C~~Ck~~~~~l~~~~~--~~~~vd~~~--~~~l~~~~~--v~~~PT~~-~g~   54 (75)
T PHA02125          2 IYLFGAEW------CANCKMVKPMLANVEY--TYVDVDTDE--GVELTAKHH--IRSLPTLV-NTS   54 (75)
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHhh--eEEeeeCCC--CHHHHHHcC--CceeCeEE-CCE
Confidence            78899997      9999999999987544  444444332  235666665  77899876 665

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.19  E-value=0.00073  Score=49.85  Aligned_cols=58  Identities=26%  Similarity=0.415  Sum_probs=44.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .|.+|++.+      |++|..++.++++.     ++.+..+|++..++    +.+..|  ...+|.++|||+.++
T Consensus        15 ~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~--V~~vPt~vidG~~~~   77 (89)
T cd03026          15 NFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERG--IMSVPAIFLNGELFG   77 (89)
T ss_pred             EEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcC--CccCCEEEECCEEEE
Confidence            477888874      99999988887665     67888889876643    444554  778999999998664

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.15  E-value=0.0016  Score=46.45  Aligned_cols=54  Identities=24%  Similarity=0.317  Sum_probs=40.6

Q ss_pred             eeeeeeecccccCCCcchHHH----HHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~----k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      |.+|+ +|      |+.|..+    ++++++++++++.++++...    +..+ .|  ..++|.+++||+.+
T Consensus         3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~----~a~~-~~--v~~vPti~i~G~~~   60 (76)
T TIGR00412         3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDMN----EILE-AG--VTATPGVAVDGELV   60 (76)
T ss_pred             EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHH-cC--CCcCCEEEECCEEE
Confidence            56777 65      9999998    66888899988888887322    2222 34  78999999999754

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.09  E-value=0.0012  Score=46.92  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHH----HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILR----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~----~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +|.+|+.+       |++|.++.++++    .+++.++.+|+ .+   .+++. .+  |..++|.++|||+.
T Consensus         2 ~I~v~~~~-------C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~---~~~~~-~y--gv~~vPalvIng~~   59 (76)
T PF13192_consen    2 KIKVFSPG-------CPYCPELVQLLKEAAEELGIEVEIIDI-ED---FEEIE-KY--GVMSVPALVINGKV   59 (76)
T ss_dssp             EEEEECSS-------CTTHHHHHHHHHHHHHHTTEEEEEEET-TT---HHHHH-HT--T-SSSSEEEETTEE
T ss_pred             EEEEeCCC-------CCCcHHHHHHHHHHHHhcCCeEEEEEc-cC---HHHHH-Hc--CCCCCCEEEECCEE
Confidence            46665444       999998777555    56788877787 33   33443 34  68899999999863

...

>KOG4023|consensus

Probab=97.08  E-value=0.0008  Score=50.18  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=62.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeeccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .|.+|+++.+|++++=..=+.+..+|+.+.|.|+++||....+.+.++...+.      .|....||||-++++-|+|+.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            58999999999998888888999999999999999999988887766654431      256678999999999999873

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.06  E-value=0.0036  Score=44.52  Aligned_cols=49  Identities=22%  Similarity=0.422  Sum_probs=35.5

Q ss_pred             CCcchHHHHH----HHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeC
Q psy15946        117 TYHRCLKVKQ----ILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIG  172 (251)
Q Consensus       117 tc~~C~~~k~----lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iG  172 (251)
                      +|++|..+.+    ++..++++++.+|+. +   .+++ ...|  ..++|.++|||+  +.|
T Consensus         9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~yg--v~~vPalvIng~~~~~G   63 (76)
T PF13192_consen    9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYG--VMSVPALVINGKVVFVG   63 (76)
T ss_dssp             SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT---SSSSEEEETTEEEEES
T ss_pred             CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcC--CCCCCEEEECCEEEEEe
Confidence            4999996666    567788889888873 2   2334 4554  789999999998  455

...

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.05  E-value=0.001  Score=51.05  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             CCeEEEE-eecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMY-STTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvy-t~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ...|+|| +++|      |++|+.++.+|++..     +.|..+|++.+++    +.+.+  +..++|.+++-
T Consensus        22 ~~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~--~v~~vPt~~i~   82 (113)
T cd02975          22 PVDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKY--GVERVPTTIFL   82 (113)
T ss_pred             CeEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHc--CCCcCCEEEEE
Confidence            3356666 6787      999999999998753     5778888887664    44555  57889999874

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=96.98  E-value=0.0029  Score=46.99  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=47.7

Q ss_pred             CCeEEEEeecCCCC--CCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIV--RDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~--~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .+.+.+|.+..++.  ...||+|++++-.|+.++++|+.++|+....- +.+.++.  -...+|++..+|..+
T Consensus         3 ~p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p-~~~~~~n--P~g~vPvL~~~~~~i   72 (91)
T cd03061           3 EPEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP-EDLKDLA--PGTQPPFLLYNGEVK   72 (91)
T ss_pred             CCcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC-HHHHHhC--CCCCCCEEEECCEEe
Confidence            35677787765432  35899999999999999999988877643321 3466664  346799887655443

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=96.93  E-value=0.0035  Score=43.67  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             ccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      +...|++|.+++.+|+..|++|+.++++...        ..  ....+|.+.++|+.+.+...+.+..+
T Consensus        12 ~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~--p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          12 LPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS--PTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC--CCcccCEEEECCEEEcCHHHHHHHHh
Confidence            3346999999999999999999999987542        22  35689999999999999887766543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>KOG3029|consensus

Probab=96.87  E-value=0.0027  Score=56.09  Aligned_cols=82  Identities=26%  Similarity=0.391  Sum_probs=60.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH-
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN-  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~-  181 (251)
                      ++++|.-.      |||+|.++|++|+-++++|..++|.  +-.+++++=-   +-..||.+.+.|+-.-+..-+..+. 
T Consensus        90 ~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~S---sykKVPil~~~Geqm~dSsvIIs~la  158 (370)
T KOG3029|consen   90 DLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWS---SYKKVPILLIRGEQMVDSSVIISLLA  158 (370)
T ss_pred             eEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhcccc---ccccccEEEeccceechhHHHHHHHH
Confidence            68899877      7999999999999999999988873  4455665432   2578999999887655555444433 


Q ss_pred             -----HcCChhhhhccCCC
Q psy15946        182 -----ESGELRRILKPYKS  195 (251)
Q Consensus       182 -----e~G~L~~~L~~~~~  195 (251)
                           ....|.++++..|.
T Consensus       159 TyLq~~~q~l~eiiq~yPa  177 (370)
T KOG3029|consen  159 TYLQDKRQDLGEIIQMYPA  177 (370)
T ss_pred             HHhccCCCCHHHHHHhccc
Confidence                 34467777777663

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=96.84  E-value=0.0027  Score=40.88  Aligned_cols=56  Identities=29%  Similarity=0.444  Sum_probs=43.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHH-----HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~-----~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +++|..+|      |++|.+++..|.     ..++.+..+|++...+..+... ..  +...+|.+++.+
T Consensus         1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RY--GVGGVPTLVVFG   61 (69)
T ss_pred             CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hC--CCccccEEEEEe
Confidence            46777886      999999999999     5678999999988887555422 23  567799998765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=96.81  E-value=0.0059  Score=45.32  Aligned_cols=64  Identities=22%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      ..|++|++++-+|...|++|+..++++... -+.+.++.  ....+|.+..+|..|...+.+.+..+
T Consensus        20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~n--P~g~vPvL~~~~~~i~eS~~I~eYLd   83 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLA--PGTQPPFLLYNGEVKTDNNKIEEFLE   83 (91)
T ss_pred             CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhC--CCCCCCEEEECCEEecCHHHHHHHHH
Confidence            469999999999999999999988865432 24466665  36789999999999988887777544

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=96.81  E-value=0.0055  Score=43.20  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++|...      .++.|.+++-+|+.+|++|+.++++...  ....++.++..  ...+|.+..+|..+.....+.+.
T Consensus         1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP--~g~vP~L~~~g~~l~Es~aI~~y   71 (73)
T cd03052           1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP--TGEVPVLIHGDNIICDPTQIIDY   71 (73)
T ss_pred             CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc--CCCCCEEEECCEEEEcHHHHHHH
Confidence            3577777      4899999999999999999998875432  23456777764  78999999888887776665543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.80  E-value=0.0076  Score=42.13  Aligned_cols=68  Identities=12%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+|+..      .+++|.+++-+|+..|++|+.++++.. ....++++... ....+|.+..+|..+.+...+.+.
T Consensus         2 ~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p-~~~~vP~l~~~~~~l~eS~aI~~y   69 (74)
T cd03058           2 KLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNP-VHKKIPVLLHNGKPICESLIIVEY   69 (74)
T ss_pred             EEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCC-CCCCCCEEEECCEEeehHHHHHHH
Confidence            567766      499999999999999999999887653 12234445432 126899998888877776666554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0023  Score=45.40  Aligned_cols=68  Identities=15%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHH---------hCCCCCCCceEEEC-CeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKER---------LGTDVINVPQIFVE-GVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~---------~g~~~~~vP~vfi~-g~~iG  172 (251)
                      -++|.+.+      ||+|..+++.|++.+|+|+++||..+- .+++.|+-+         -+.+...+|.+.++ |+.|=
T Consensus         4 p~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl   77 (85)
T COG4545           4 PKLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL   77 (85)
T ss_pred             ceeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence            36788885      999999999999999999999996553 333333322         11235678998765 44443


Q ss_pred             ChHHHH
Q psy15946        173 DADAIE  178 (251)
Q Consensus       173 G~d~l~  178 (251)
                      | ++|.
T Consensus        78 ~-~Dl~   82 (85)
T COG4545          78 G-DDLS   82 (85)
T ss_pred             e-chhh
Confidence            3 4443

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=96.79  E-value=0.0071  Score=42.36  Aligned_cols=70  Identities=16%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .+++|.+++-+|...|++|+.+.++...  ...+++.+...  ...+|.+..+|..+.....+.+..
T Consensus         2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P--~~~vP~l~~~g~~l~es~aI~~yL   73 (76)
T cd03053           2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNP--FGQIPALEDGDLKLFESRAITRYL   73 (76)
T ss_pred             eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCC--CCCCCEEEECCEEEEcHHHHHHHH
Confidence            4678777      4999999999999999999998776532  23355666653  788999988888887777666543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0016  Score=50.59  Aligned_cols=46  Identities=22%  Similarity=0.373  Sum_probs=39.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      .|.||+.+      .|.-|++++++|+++||+|+++|+..++-.+++|.++.
T Consensus         2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            47899988      69999999999999999999999987766666666665

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.78  E-value=0.0032  Score=44.05  Aligned_cols=57  Identities=11%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +.+|+.+.      ||+|.+++-+|+.++++|+.++++... ...++++... ....+|.+..+|
T Consensus         1 ~~Ly~~~~------sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p-~~~~vP~l~~~~   57 (74)
T cd03058           1 VKLLGAWA------SPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNP-VHKKIPVLLHNG   57 (74)
T ss_pred             CEEEECCC------CchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCC-CCCCCCEEEECC
Confidence            36888885      999999999999999999998776542 1244555431 136799997654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.78  E-value=0.0035  Score=46.83  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHH------HH-c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQIL------RT-H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L------~~-~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|++....+      .+ .  ++.+..+|++.+.....++.+.+  +..++|.+++
T Consensus        11 ~k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~--~i~~~Pti~~   78 (104)
T cd02953          11 GKPVFVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF--GVFGPPTYLF   78 (104)
T ss_pred             CCeEEEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc--CCCCCCEEEE
Confidence            345688899997      99999987543      11 1  56777788877665556777777  5778998865

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.75  E-value=0.0037  Score=53.39  Aligned_cols=57  Identities=14%  Similarity=0.185  Sum_probs=43.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      .-.|++|+++|      |++|..++.+++..     .+.+..+|++.+++.    .+.+  +..++|++++++.
T Consensus       134 pv~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~--~V~~vPtl~i~~~  195 (215)
T TIGR02187       134 PVRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKY--GVMSVPKIVINKG  195 (215)
T ss_pred             CcEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHh--CCccCCEEEEecC
Confidence            34677799998      99999999998874     356667787777663    3344  5778999999754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK10026 arsenate reductase; Provisional

Probab=96.73  E-value=0.0019  Score=51.89  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=40.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      ..|+||+.+      .|.-|.+++++|++++++|+++|+..++-..++|..++.
T Consensus         2 ~~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~   49 (141)
T PRK10026          2 SNITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA   49 (141)
T ss_pred             CEEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence            458899998      699999999999999999999999877666666666653

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=96.67  E-value=0.0027  Score=44.30  Aligned_cols=52  Identities=19%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      .++...||+|.+++.+|+.++++|+.++++...        ..  ....+|.+..+|..+.+
T Consensus        10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~--p~g~vP~l~~~g~~l~e   61 (72)
T cd03054          10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS--PTGKLPFLELNGEKIAD   61 (72)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC--CCcccCEEEECCEEEcC
Confidence            366678999999999999999999999887532        22  34579999988766544

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.67  E-value=0.0073  Score=41.77  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+|+..      .++.|.+++.+|+..|++|+.+.++...  ....++.+...  ...+|.+..+|..+.....+.+
T Consensus         2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~   70 (73)
T cd03042           2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP--QGLVPTLVIDGLVLTQSLAIIE   70 (73)
T ss_pred             EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC--CCCCCEEEECCEEEEcHHHHHH
Confidence            456555      3788999999999999999998776532  23456666653  7899999998888776655544

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.65  E-value=0.007  Score=58.37  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCC-----ceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV-----KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v-----~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .-.|.+|.+.      +||+|-.+++.++...+     ..+.+|....++    +.+..+  ...||.+||||+.++
T Consensus       118 ~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~--v~~VP~~~i~~~~~~  182 (515)
T TIGR03140       118 PLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALG--IQGVPAVFLNGEEFH  182 (515)
T ss_pred             CeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcC--CcccCEEEECCcEEE
Confidence            3357888888      69999999998876654     344455544433    334444  679999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=96.64  E-value=0.0047  Score=43.31  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=43.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +++|+.+.      |++|.+++-+|+.++++|+.+.++...  ...+++.+..  ....+|.+..+|
T Consensus         2 ~~Ly~~~~------s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--P~~~vP~l~~~g   60 (76)
T cd03053           2 LKLYGAAM------STCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN--PFGQIPALEDGD   60 (76)
T ss_pred             eEEEeCCC------ChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC--CCCCCCEEEECC
Confidence            68999996      999999999999999999998776532  2234566654  467799987654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.63  E-value=0.0054  Score=59.15  Aligned_cols=60  Identities=22%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .-.|.+|.+.      +||+|-.++..+++.-     |..+.+|....++    +.+..+  ...||.+||||+.+.
T Consensus       117 ~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~--v~~VP~~~i~~~~~~  181 (517)
T PRK15317        117 DFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARN--IMAVPTVFLNGEEFG  181 (517)
T ss_pred             CeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcC--CcccCEEEECCcEEE
Confidence            3457888888      6999999998886654     4455566555444    444444  679999999997543

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=96.63  E-value=0.0025  Score=49.19  Aligned_cols=46  Identities=9%  Similarity=0.180  Sum_probs=38.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+.+      +|+-|.+++++|++++++|+++|+..++--.++|.+++.
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~   46 (114)
T TIGR00014         1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA   46 (114)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence            5688888      699999999999999999999999877666666666653

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=96.63  E-value=0.0038  Score=44.02  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +++|..+.      |++|.+++-+|+.+|++|+.++++...  ....++.++.  ....+|.+..+|.
T Consensus         1 ~~ly~~~~------s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in--P~g~vP~L~~~g~   60 (73)
T cd03052           1 LVLYHWTQ------SFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN--PTGEVPVLIHGDN   60 (73)
T ss_pred             CEEecCCC------CccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC--cCCCCCEEEECCE
Confidence            46888885      999999999999999999988775532  2235677765  4678999976554

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.62  E-value=0.012  Score=41.22  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++|....      ++.|.+++-+|...|++|+.+.++.+ ...+++....  ....+|.+..+|..+.+...+.+.
T Consensus         2 ~~Ly~~~~------~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~--p~~~vP~l~~~~~~l~es~aI~~y   69 (73)
T cd03076           2 YTLTYFPV------RGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM--LFGQLPCFKDGDLTLVQSNAILRH   69 (73)
T ss_pred             cEEEEeCC------cchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC--CCCCCCEEEECCEEEEcHHHHHHH
Confidence            45676663      89999999999999999999988652 3334455543  367899999999888776666554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.61  E-value=0.0059  Score=45.12  Aligned_cols=55  Identities=22%  Similarity=0.382  Sum_probs=40.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-+++|+++|      |+.|+.+...|++      ..+.+..+|++.+++.    .+.+  +..++|.+++
T Consensus        13 ~~~vlv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~--~v~~vPt~~i   73 (97)
T cd02949          13 DRLILVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAA--GIMGTPTVQF   73 (97)
T ss_pred             CCeEEEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC--CCeeccEEEE
Confidence            344678888897      9999999998877      3477888888877764    3344  4567898864

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=96.59  E-value=0.0097  Score=45.62  Aligned_cols=50  Identities=28%  Similarity=0.317  Sum_probs=37.5

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      +.|+++|      |++|..++.+|++..     +.+..+|++.++    ++.+..+  ..++|.+++
T Consensus        27 v~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~--v~~vPt~~i   81 (113)
T cd02975          27 VFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG--VERVPTTIF   81 (113)
T ss_pred             EEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC--CCcCCEEEE
Confidence            3446676      999999999987654     567788887654    5666665  789999877

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=96.59  E-value=0.0028  Score=48.75  Aligned_cols=45  Identities=16%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      |+||+.+      +|.-|.+++++|++++++|+++|+..++-..++|.+++
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            5688888      69999999999999999999999976654455554444

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>PRK10853 putative reductase; Provisional

Probab=96.54  E-value=0.003  Score=49.17  Aligned_cols=46  Identities=9%  Similarity=0.167  Sum_probs=39.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+..      .|.-|.+++++|+++|++|+++|+..++-..++|.+++.
T Consensus         2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~   47 (118)
T PRK10853          2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID   47 (118)
T ss_pred             EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence            6789988      699999999999999999999999877666666666653

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.53  E-value=0.0039  Score=47.58  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             EeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         29 YSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        29 yt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+.+      .|.-|++|+++|++++++|+++|+..++-..+++.+++
T Consensus         1 Y~~~------~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    1 YGNP------NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             EE-T------T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CcCC------CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            6667      49999999999999999999999999776666666654

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=96.53  E-value=0.0033  Score=49.50  Aligned_cols=46  Identities=11%  Similarity=0.190  Sum_probs=37.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      .|+||...      .|.-|.+++++|+++||+|+++|+..++-..++|.++.
T Consensus         2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l   47 (126)
T TIGR01616         2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF   47 (126)
T ss_pred             eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence            36788888      69999999999999999999999977665555555554

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=96.42  E-value=0.012  Score=45.91  Aligned_cols=64  Identities=16%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCH-------HHHHHHHHHhC--CCCCCCCcee--e
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSR-------ETQQEFKERLG--TDVINVPQIF--V   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~-------~~~~el~~~~g--~g~~~vP~i~--i   88 (251)
                      .-|+.|+++|      ||+|+.+.-.|++    ..+++..+|++.+.       ....++.+..+  .+...+|.++  -
T Consensus        25 ~~iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k   98 (122)
T TIGR01295        25 TATFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT   98 (122)
T ss_pred             cEEEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence            3578888897      9999996666554    55788899998654       12344444442  1345589885  4


Q ss_pred             ecccc
Q psy15946         89 EGVHI   93 (251)
Q Consensus        89 ~g~~~   93 (251)
                      +|+.+
T Consensus        99 ~Gk~v  103 (122)
T TIGR01295        99 DGKQV  103 (122)
T ss_pred             CCeEE
Confidence            55544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=96.42  E-value=0.013  Score=40.69  Aligned_cols=67  Identities=16%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ++|...      .++.|.+++-+|+..|++|+.++++.......++....  ....+|.+..+|..+.....+.+
T Consensus         2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~es~aI~~   68 (72)
T cd03039           2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKKLTQSNAILR   68 (72)
T ss_pred             EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEEEEecHHHHH
Confidence            456555      37899999999999999999998864322222344333  47899999988887776555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=96.36  E-value=0.0062  Score=42.37  Aligned_cols=58  Identities=14%  Similarity=0.212  Sum_probs=42.0

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      ++|....      ++.|.+++-+|+.+|++|+.++++.......++.+..  ....+|.+..+|..
T Consensus         2 ~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~   59 (72)
T cd03039           2 KLTYFNI------RGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKK   59 (72)
T ss_pred             EEEEEcC------cchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEE
Confidence            6787775      8999999999999999999988865332222344332  45778999776543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.36  E-value=0.0054  Score=42.62  Aligned_cols=50  Identities=28%  Similarity=0.659  Sum_probs=29.0

Q ss_pred             ccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCcccccc----cCCC
Q psy15946        202 CQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLVK----CYAC  251 (251)
Q Consensus       202 C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~~----C~~C  251 (251)
                      |..|.|++.      ..|+.|+|+-.++...+  +..-.....|+.|+-.|.+.    |+.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C   62 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC   62 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence            555666555      78888988877653322  11122467899998888774    6665

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.35  E-value=0.0067  Score=41.95  Aligned_cols=58  Identities=14%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      ++|+...      ++.|.+++.+|+.++++|+.+.++...  ...+++.+..  ...++|++..+|..
T Consensus         2 ~L~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~~~~   61 (73)
T cd03042           2 ILYSYFR------SSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN--PQGLVPTLVIDGLV   61 (73)
T ss_pred             EEecCCC------CcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC--CCCCCCEEEECCEE
Confidence            5787775      999999999999999999998776432  2235666654  46789999776543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=96.34  E-value=0.02  Score=40.74  Aligned_cols=68  Identities=21%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEEC---CeeeCChHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVE---GVHIGDADAIE  178 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~---g~~iGG~d~l~  178 (251)
                      +.+|+..      . ++|.+++.+|+..|++|+.+.+...  ....+++.+...  ...+|.+..+   |..+.....+.
T Consensus         2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~g~~l~eS~aI~   72 (81)
T cd03048           2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP--NGRIPAIVDHNGTPLTVFESGAIL   72 (81)
T ss_pred             eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc--CCCCCEEEeCCCCceEEEcHHHHH
Confidence            4678765      4 9999999999999999988777642  334466776653  6789999887   67777666555


Q ss_pred             HH
Q psy15946        179 RL  180 (251)
Q Consensus       179 ~l  180 (251)
                      +.
T Consensus        73 ~y   74 (81)
T cd03048          73 LY   74 (81)
T ss_pred             HH
Confidence            54

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=96.29  E-value=0.015  Score=40.50  Aligned_cols=66  Identities=12%  Similarity=0.015  Sum_probs=47.6

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHh--cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~--~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~  179 (251)
                      .+|+..      .+++|.+++.+|..  .+++|+.+.++.. ....++.+...  ...+|.+.. +|..+.+...+.+
T Consensus         2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p--~~~vP~l~~~~g~~l~es~aI~~   70 (73)
T cd03049           2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNP--LGKIPALVLDDGEALFDSRVICE   70 (73)
T ss_pred             EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCC--CCCCCEEEECCCCEEECHHHHHh
Confidence            467666      49999999999999  8999999888642 22345555543  678999875 6777766555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=96.26  E-value=0.017  Score=48.89  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHHHHH
Q psy15946        106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIERLNE  182 (251)
Q Consensus       106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~l~e  182 (251)
                      +|+..      .||+|.+++-+|..+|++|+.+++..+.. .. ..+..  +..++|.+. .+|..+.+...+.+..+
T Consensus         2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~n--p~g~vP~l~~~~g~~l~es~~I~~yL~   69 (209)
T TIGR02182         2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMI--GAKQVPILQKDDGRAMPESLDIVAYFD   69 (209)
T ss_pred             eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhc--CCCCcceEEeeCCeEeccHHHHHHHHH
Confidence            57766      49999999999999999999988855432 12 23443  367899997 78889998888777544

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=96.24  E-value=0.011  Score=42.14  Aligned_cols=55  Identities=18%  Similarity=0.226  Sum_probs=42.5

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      +++|+.+       .++|.+++-+|+.++++|+.+.++.  .....+++.+..  ....+|.+..+
T Consensus         2 ~~Ly~~~-------~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~   58 (81)
T cd03048           2 ITLYTHG-------TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN--PNGRIPAIVDH   58 (81)
T ss_pred             eEEEeCC-------CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC--cCCCCCEEEeC
Confidence            6899987       5999999999999999998877763  233446677664  45679999765

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=96.19  E-value=0.015  Score=40.96  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=41.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-+++|+++|      |++|.++...|++     .++.|..+|++.+.+..+    .+  +...+|.+++
T Consensus        11 ~~~ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~--~v~~~P~~~~   69 (93)
T cd02947          11 KPVVVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EY--GVRSIPTFLF   69 (93)
T ss_pred             CcEEEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hc--CcccccEEEE
Confidence            45688888887      9999999999988     678888888887666433    34  4566899875

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK10387 glutaredoxin 2; Provisional

Probab=96.14  E-value=0.022  Score=47.68  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EECCeeeCChHHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVEGVHIGDADAIERLNE  182 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~g~~iGG~d~l~~l~e  182 (251)
                      +.+|+..      .|++|.+++-+|+..|++|+.++++..... .. .+..+  ..++|.+ ..+|..+.+...+.+..+
T Consensus         1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p--~~~VPvL~~~~g~~l~eS~aI~~yL~   70 (210)
T PRK10387          1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIG--QKQVPILQKDDGSYMPESLDIVHYID   70 (210)
T ss_pred             CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcC--CcccceEEecCCeEecCHHHHHHHHH
Confidence            3578766      499999999999999999999988654322 22 23433  5799998 567888988887777554


Q ss_pred             c
Q psy15946        183 S  183 (251)
Q Consensus       183 ~  183 (251)
                      +
T Consensus        71 ~   71 (210)
T PRK10387         71 E   71 (210)
T ss_pred             H
Confidence            3

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.13  E-value=0.015  Score=40.80  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +++|..+.      ++.|.+++-+|+..+++|+.+.++.+ ...++++...  ...++|.+..+|..
T Consensus         2 ~~Ly~~~~------~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~--p~~~vP~l~~~~~~   59 (73)
T cd03076           2 YTLTYFPV------RGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM--LFGQLPCFKDGDLT   59 (73)
T ss_pred             cEEEEeCC------cchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC--CCCCCCEEEECCEE
Confidence            47788775      99999999999999999999988752 2234455443  45679999776543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=96.13  E-value=0.011  Score=41.18  Aligned_cols=53  Identities=8%  Similarity=-0.066  Sum_probs=40.5

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHH--cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~--~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ++|+.+.      |++|.+++-+|+.  ++++|+.+.++.. ....++.+..  ....+|.+..
T Consensus         2 ~Ly~~~~------s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~--p~~~vP~l~~   56 (73)
T cd03049           2 KLLYSPT------SPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN--PLGKIPALVL   56 (73)
T ss_pred             EEecCCC------CcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC--CCCCCCEEEE
Confidence            6888885      9999999999999  8899999888642 2224555554  4677999875

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=96.09  E-value=0.015  Score=49.17  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=47.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      .+++|+.+.      |++|.+++-+|+.+|++|+.+.|+... ..++++++.  -...||++..+|..
T Consensus        10 ~~~Ly~~~~------s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~n--P~g~VPvL~~~g~~   68 (211)
T PRK09481         10 VMTLFSGPT------DIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLN--PYQSVPTLVDRELT   68 (211)
T ss_pred             eeEEeCCCC------ChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhC--CCCCCCEEEECCEE
Confidence            589999986      999999999999999999998887532 235677664  45679999876644

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=95.75  E-value=0.034  Score=35.50  Aligned_cols=56  Identities=29%  Similarity=0.444  Sum_probs=41.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHH-----hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG  168 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~-----~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g  168 (251)
                      +++|..++      |++|.+++..|.     ..++.+..+|+....+..+.+. ..  ....+|.+++.+
T Consensus         1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELK-RY--GVGGVPTLVVFG   61 (69)
T ss_pred             CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHH-hC--CCccccEEEEEe
Confidence            35566664      999999999999     6678899999887776555422 22  367899988765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.64  E-value=0.16  Score=44.02  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=24.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---CCcccee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDK   60 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---~v~~~e~   60 (251)
                      ....|++||-+.      ||||+++.+.|.+.   +|.+..+
T Consensus       107 ~k~~I~vFtDp~------CpyCkkl~~~l~~~~~~~v~v~~~  142 (232)
T PRK10877        107 EKHVITVFTDIT------CGYCHKLHEQMKDYNALGITVRYL  142 (232)
T ss_pred             CCEEEEEEECCC------ChHHHHHHHHHHHHhcCCeEEEEE
Confidence            345799999995      99999998888874   3544443

>PRK10387 glutaredoxin 2; Provisional

Probab=95.63  E-value=0.023  Score=47.63  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=42.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~g   94 (251)
                      +++|+.+.      ||+|.+++-+|+.+|++|+.++++.... ... .+..  +..++|++. .+|..+.
T Consensus         1 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~--p~~~VPvL~~~~g~~l~   60 (210)
T PRK10387          1 MKLYIYDH------CPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRMI--GQKQVPILQKDDGSYMP   60 (210)
T ss_pred             CEEEeCCC------CchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHhc--CCcccceEEecCCeEec
Confidence            36898885      9999999999999999999988865432 222 2333  456899995 4554443

>PHA02278 thioredoxin-like protein

Probab=95.63  E-value=0.035  Score=42.02  Aligned_cols=59  Identities=12%  Similarity=0.188  Sum_probs=40.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+-|+++|      |++|+.+...|++.      .+++..+|++.+.....++.+.+  +..++|++.+
T Consensus        14 ~~~vvV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--~I~~iPT~i~   78 (103)
T PHA02278         14 KKDVIVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLF--DIMSTPVLIG   78 (103)
T ss_pred             CCcEEEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHC--CCccccEEEE
Confidence            345677888887      99999998877653      24577778887632233455555  5677898853

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=95.56  E-value=0.034  Score=42.99  Aligned_cols=58  Identities=10%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----C-CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----L-VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~-v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      .-|+-|+++|      |++|+.+...|++.     + +.|..+|++.+++    +.+.+  +..++|++.  -+|+.+
T Consensus        16 ~vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~--~V~~iPTf~~fk~G~~v   81 (114)
T cd02954          16 VVVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMY--ELYDPPTVMFFFRNKHM   81 (114)
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHc--CCCCCCEEEEEECCEEE
Confidence            3567799998      99999998888763     2 4677888888876    44555  466799884  455554

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=95.55  E-value=0.022  Score=48.20  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=42.6

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGT   95 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~gG   95 (251)
                      ++|+...      ||+|.+++-+|+.+|++|+.+++..+.. .. ..+..  ...++|++. .+|..+.+
T Consensus         1 ~Ly~~~~------sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~n--p~g~vP~l~~~~g~~l~e   60 (209)
T TIGR02182         1 KLYIYDH------CPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMI--GAKQVPILQKDDGRAMPE   60 (209)
T ss_pred             CeecCCC------CChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhc--CCCCcceEEeeCCeEecc
Confidence            3688775      9999999999999999999988765432 12 23343  456799997 55555444

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.55  E-value=0.024  Score=54.74  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=43.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .-.|.+|.++      +||||..|++.+.+..     |..+.+|....++    +.+..  +..+||.++++|+..
T Consensus       118 ~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~--~v~~VP~~~i~~~~~  181 (515)
T TIGR03140       118 PLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEAL--GIQGVPAVFLNGEEF  181 (515)
T ss_pred             CeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhc--CCcccCEEEECCcEE
Confidence            3479999999      5999999999988753     4445555554444    44444  567899999999764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=95.53  E-value=0.029  Score=39.35  Aligned_cols=57  Identities=19%  Similarity=0.269  Sum_probs=42.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +++|+.+.      +++|++++-+|+..+++|+.+.++...  ...+++.+..  ....+|.+..+|
T Consensus         1 ~~ly~~~~------s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~L~~~~   59 (76)
T cd03050           1 LKLYYDLM------SQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN--PFGKVPAIVDGD   59 (76)
T ss_pred             CEEeeCCC------ChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC--cCCCCCEEEECC
Confidence            36888885      999999999999999999988776422  2234566654  467799997654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=95.51  E-value=0.04  Score=39.52  Aligned_cols=66  Identities=24%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             ccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHHH
Q psy15946        114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLNE  182 (251)
Q Consensus       114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~e  182 (251)
                      .+..+++|.+++.+|...+++|+.+.++...  ....++ ...  ....+|.+..+ |..+.+...+.+..+
T Consensus        12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~--p~~~vP~L~~~~~~~l~eS~aI~~yL~   80 (84)
T cd03038          12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG--GFYTVPVIVDGSGEVIGDSFAIAEYLE   80 (84)
T ss_pred             CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC--CCceeCeEEECCCCEEeCHHHHHHHHH
Confidence            3456899999999999999999988775432  222333 333  36789999888 888888777766543

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=95.51  E-value=0.03  Score=39.33  Aligned_cols=58  Identities=26%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             EEEEeecC-CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~-~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +++|..+. .+.+..+|+|.+++.+|+..+++|+.++++..        +..  ....+|++..+|+.+
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l   60 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKI   60 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEE
Confidence            46666652 23444689999999999999999998877631        232  456789998776543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=95.47  E-value=0.024  Score=39.42  Aligned_cols=63  Identities=21%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCC---CHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFM---SRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLNE  182 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~---~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~e  182 (251)
                      ||++.+++-+|+.+|++|+..-+..   ......++.++.+  ..++|.+.. +|+.+.+...+.+..+
T Consensus         2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p--~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP--RGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST--T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc--CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            8999999999999999998776632   2222367788875  789999998 7899998887776544

...

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=95.43  E-value=0.021  Score=40.96  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             EEEeecCC-CCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMG-IVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~-~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++|+.+++ +.+..+++|.+++-+|..++++|+.+.++...  ....++ +..  ....+|++..+
T Consensus         2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~--p~~~vP~L~~~   64 (84)
T cd03038           2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG--GFYTVPVIVDG   64 (84)
T ss_pred             eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC--CCceeCeEEEC
Confidence            44544322 24567999999999999999999988765332  212233 222  45678999765

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=95.40  E-value=0.031  Score=39.20  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-HHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++|+.+.      |++|.+++-+|+.++++|+.++++...+ ..++++++.  ....+|++..+
T Consensus         2 ~Ly~~~~------~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~   57 (75)
T cd03044           2 TLYTYPG------NPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGA   57 (75)
T ss_pred             eEecCCC------CccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcC
Confidence            4788775      9999999999999999999988876432 235566664  46789999874

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.39  E-value=0.027  Score=54.87  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----c-CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~-~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      -.|.+|.+++      ||+|.++.+.++.    + +|..+.+|+...++.    .+..  +..+||.++|||+.
T Consensus       478 ~~i~v~~~~~------C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~--~v~~vP~~~i~~~~  539 (555)
T TIGR03143       478 VNIKIGVSLS------CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEY--GIMSVPAIVVDDQQ  539 (555)
T ss_pred             eEEEEEECCC------CCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhC--CceecCEEEECCEE
Confidence            3689998885      9999998887665    4 688888888887763    3334  57789999999854

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=95.36  E-value=0.027  Score=42.91  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=27.7

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      +|.-|.+++++|+++|++|+++|+..++--+++|.+++
T Consensus         5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            69999999999999999999999988766666665554

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.34  E-value=0.013  Score=54.31  Aligned_cols=51  Identities=25%  Similarity=0.685  Sum_probs=37.3

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|++      ...|+.|+|+-+++...++..  ....|+.|+-.|-+   +|+.|
T Consensus       145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C  204 (372)
T PRK14300        145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFT--IEQACHKCQGNGQIIKNPCKKC  204 (372)
T ss_pred             ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEE--EEEeCCCCCccceEeCCCCCCC
Confidence            56888999877      478999999977764433321  35689999988855   68777

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=95.28  E-value=0.05  Score=40.44  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=37.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH------Hh-c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL------RT-H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL------~~-~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|+++|      |++|..+...+      .+ +  ++.+..+|++.+.....++.+..+  ..++|.+++
T Consensus        15 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~--i~~~Pti~~   78 (104)
T cd02953          15 FVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG--VFGPPTYLF   78 (104)
T ss_pred             EEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC--CCCCCEEEE
Confidence            45677776      99999877443      11 1  566777888766555567777776  788998643

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.014  Score=53.89  Aligned_cols=54  Identities=24%  Similarity=0.537  Sum_probs=40.7

Q ss_pred             CCccccccCCc------ceeeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        198 ACTICQVCGGY------RLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       198 ~~~~C~~Cgg~------~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ....|..|.|+      .-..|+.|||+-.+....+...-.....|+.||-.|-+   +|+.|
T Consensus       141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C  203 (371)
T COG0484         141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKC  203 (371)
T ss_pred             eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCC
Confidence            46799999999      67899999999766433322111247899999999987   59888

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.26  E-value=0.12  Score=40.48  Aligned_cols=60  Identities=10%  Similarity=0.104  Sum_probs=36.3

Q ss_pred             HHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHh----CCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~----g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+..++.+.|++...++- ..+.+..+.+++-.    ..+...+|.++|+|+.+-|++....|.
T Consensus        86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~  150 (154)
T cd03023          86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK  150 (154)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence            3567778888886543321 12233333332221    123778999999999999887665553

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=95.22  E-value=0.081  Score=37.07  Aligned_cols=55  Identities=25%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+++|.+++.+|+..|++|+.++++..        ...  ....+|.+..+|+.+.+...+.+..
T Consensus        16 ~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080          16 LSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             CCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEEcCHHHHHHHH
Confidence            479999999999999999998887541        232  3678999999999998888776644

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.20  E-value=0.032  Score=53.83  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=44.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .-.|.+|.++      +||||..|.+.+.+.     .|..+.+|....++    +.+.+  +..+||.++++|+.+
T Consensus       117 ~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~--~v~~VP~~~i~~~~~  180 (517)
T PRK15317        117 DFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEAR--NIMAVPTVFLNGEEF  180 (517)
T ss_pred             CeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhc--CCcccCEEEECCcEE
Confidence            4479999999      499999999998774     35566666666665    44444  567899999999754

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.19  E-value=0.28  Score=41.06  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=26.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH--cCCccceeec
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT--HLVKFDDKDV   62 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~--~~v~~~e~dv   62 (251)
                      ....|++|+-+.      ||+|+++.+.|..  .++.+..+.+
T Consensus        77 ~~~~i~~f~D~~------Cp~C~~~~~~l~~~~~~v~v~~~~~  113 (197)
T cd03020          77 GKRVVYVFTDPD------CPYCRKLEKELKPNADGVTVRIFPV  113 (197)
T ss_pred             CCEEEEEEECCC------CccHHHHHHHHhhccCceEEEEEEc
Confidence            456899999995      9999999999974  4555555544

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=95.11  E-value=0.073  Score=37.33  Aligned_cols=54  Identities=24%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~  169 (251)
                      +++|++++      |+.|..+...|++     .++.+..+|.+.+.+..+    ..+  ...+|.+++  +|+
T Consensus        14 ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~--v~~~P~~~~~~~g~   74 (93)
T cd02947          14 VVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EYG--VRSIPTFLFFKNGK   74 (93)
T ss_pred             EEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hcC--cccccEEEEEECCE
Confidence            45566664      9999999999877     778888889887655433    333  567899765  676

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=95.11  E-value=0.073  Score=39.81  Aligned_cols=57  Identities=16%  Similarity=0.111  Sum_probs=40.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |+.|+.....|++.     .+.|..+|++.+++. .++.+.+  +...+|++++
T Consensus        16 k~vvv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~--~V~~~Pt~~~   77 (103)
T cd02985          16 RLVVLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRRE--KIIEVPHFLF   77 (103)
T ss_pred             CEEEEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHc--CCCcCCEEEE
Confidence            34678888897      99999988887763     466777787766532 3455555  5677898754

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=95.08  E-value=0.12  Score=36.11  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+|...      ..+.|.+++-+|+..|++|+.+.++..  +....++.+..  ....+|.+..+|..+-....+.+.
T Consensus         2 ~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           2 KLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN--PFGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             EEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC--cCCCCCEEEECCEEEEcHHHHHHH
Confidence            467766      488999999999999999998877542  22234566664  378999998888777665555443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=95.05  E-value=0.063  Score=46.78  Aligned_cols=67  Identities=12%  Similarity=0.052  Sum_probs=49.3

Q ss_pred             eEEEEeecCCCCC--CCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVR--DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~--~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .|.+|.+.++..+  ..||+|++++-.|..+|++|+.+.|+.... -+++.++.  ....+|++..+|..+.
T Consensus         2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~   70 (236)
T TIGR00862         2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKT   70 (236)
T ss_pred             ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEee
Confidence            4677877754433  489999999999999999998888765432 35677664  3567999987665543

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=95.02  E-value=0.1  Score=36.49  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=48.8

Q ss_pred             eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHH
Q psy15946        106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERL  180 (251)
Q Consensus       106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l  180 (251)
                      +|+..      .++.+.+++-+|+..|++|+.++++... ....+++++.  ....+|.+..+ |..+-....+.+.
T Consensus         3 Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~~g~~l~es~aI~~y   71 (75)
T cd03044           3 LYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGADGFCLFESNAIAYY   71 (75)
T ss_pred             EecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcCCCCEEeeHHHHHHH
Confidence            56555      4899999999999999999999887643 2235566665  47899999885 7667655544443

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=95.01  E-value=0.11  Score=36.11  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=45.5

Q ss_pred             cchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        119 HRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       119 ~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+.+++-+|+..|++|+.+.++..  .....++.+..  ....+|.+..+|..+.....+.+..
T Consensus         9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~g~~l~es~aI~~yL   71 (76)
T cd03046           9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN--PLGKVPVLVDGDLVLTESAAIILYL   71 (76)
T ss_pred             CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4678999999999999998877643  22345566554  3779999999998888777666643

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=95.00  E-value=0.054  Score=37.64  Aligned_cols=57  Identities=14%  Similarity=0.003  Sum_probs=42.9

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      ++|..++      .+++.+++-+|+.++++|+.++++...  ...+++.++.  ....+|.+..+|.
T Consensus         2 ~l~~~~~------s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n--P~~~vP~L~~~~~   60 (73)
T cd03047           2 TIWGRRS------SINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN--PNGRVPVLEDGDF   60 (73)
T ss_pred             EEEecCC------CcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC--CCCCCCEEEECCE
Confidence            5788885      899999999999999999988775422  2345666654  4567999976653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=94.99  E-value=0.02  Score=53.03  Aligned_cols=51  Identities=27%  Similarity=0.680  Sum_probs=35.1

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...++..  ...+|+.|+-.|.+   +|+.|
T Consensus       142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C  201 (371)
T PRK10767        142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFT--VQQTCPTCHGRGKIIKDPCKKC  201 (371)
T ss_pred             cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEE--EEEeCCCCCCceeECCCCCCCC
Confidence            567888888774      47888988876654333221  34688888888865   67776

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=94.94  E-value=0.12  Score=37.68  Aligned_cols=54  Identities=26%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |++|+.++..|.+.      ++.|-.+|.+.+.+    +.+.+  +...+|.+++
T Consensus        18 ~~vvv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   77 (103)
T PF00085_consen   18 KPVVVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKY--GVKSVPTIIF   77 (103)
T ss_dssp             SEEEEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHT--TCSSSSEEEE
T ss_pred             CCEEEEEeCCC------CCccccccceecccccccccccccchhhhhccch----hhhcc--CCCCCCEEEE
Confidence            45677788887      99999999888763      36666777776644    44455  4677899853

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=94.94  E-value=0.13  Score=36.02  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=48.2

Q ss_pred             ccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        114 VRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       114 ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      -+..++++.+++-+|+..|++|+.+.++... +...++.+..  ....+|.+..+|..+.....+.+
T Consensus         6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~   70 (73)
T cd03043           6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS--PTGKVPVLVDGGIVVWDSLAICE   70 (73)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC--CCCcCCEEEECCEEEEcHHHHHH
Confidence            3456889999999999999999998776432 2335666665  47899999999887776665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK15113 glutathione S-transferase; Provisional

Probab=94.92  E-value=0.058  Score=45.65  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             CeEEEEeec-CCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         24 GKIVMYSTT-MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        24 ~~vvvyt~~-~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +.+++|+.+ +     .+++|.+++-+|+.+|++|+.+.++..  .....++.++.  -...||++..+|..
T Consensus         4 ~~~~Ly~~~~~-----~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~   68 (214)
T PRK15113          4 PAITLYSDAHF-----FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFE   68 (214)
T ss_pred             CeEEEEeCCCC-----CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEE
Confidence            468999975 2     399999999999999999998877643  22335677664  45679999877644

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=94.89  E-value=0.049  Score=38.16  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=42.1

Q ss_pred             CCCCCCCchHHHHHHHHHHcCCccceeeccCCH-HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~-~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      .+.++.++++.+++-+|+.++++|+.+.++... +...++++..  ....+|.+..+|.
T Consensus         4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n--P~g~vP~L~~~g~   60 (73)
T cd03043           4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS--PTGKVPVLVDGGI   60 (73)
T ss_pred             EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC--CCCcCCEEEECCE
Confidence            466778999999999999999999988776533 2235566654  4677999977654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=94.79  E-value=0.096  Score=40.08  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH   92 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~   92 (251)
                      ..-|+.|.++|      |+.|+.+...|++.     ++.|..+|++..++    +.+.+  +..++|.+.  -+|+.
T Consensus        23 ~~vvV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~--~v~~vPt~l~fk~G~~   87 (113)
T cd02989          23 ERVVCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKL--NIKVLPTVILFKNGKT   87 (113)
T ss_pred             CcEEEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHC--CCccCCEEEEEECCEE
Confidence            34667777787      99999999888762     47788888888776    44444  456788884  45543

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=94.74  E-value=0.14  Score=39.83  Aligned_cols=63  Identities=16%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH----HhcCCceeEEEcCCCH-------HHHHHHHHHhC--CCCCCCceE--EECC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSR-------ETQQEFKERLG--TDVINVPQI--FVEG  168 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~-------~~~~el~~~~g--~~~~~vP~v--fi~g  168 (251)
                      |+.|+.+|      ||+|+.+.-+|    ++.++++..+|++.+.       +...++.+..+  .+...+|.+  |-+|
T Consensus        27 iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G  100 (122)
T TIGR01295        27 TFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG  100 (122)
T ss_pred             EEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence            56677775      99999855544    5556788899997543       12234444433  123458985  5678


Q ss_pred             eeeC
Q psy15946        169 VHIG  172 (251)
Q Consensus       169 ~~iG  172 (251)
                      +.++
T Consensus       101 k~v~  104 (122)
T TIGR01295       101 KQVS  104 (122)
T ss_pred             eEEE
Confidence            6543

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=94.69  E-value=0.085  Score=39.51  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHH----------------HHHHHHHHh
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRE----------------TQQEFKERL   76 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~----------------~~~el~~~~   76 (251)
                      ..+.|++|+.+|      ||+|+++.+.+...         ++.+..+++..+..                ...++...+
T Consensus         5 ~k~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   78 (112)
T PF13098_consen    5 GKPIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY   78 (112)
T ss_dssp             SSEEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc
Confidence            455789999997      99999987776631         24455556654432                124455556


Q ss_pred             CCCCCCCCceeee
Q psy15946         77 GTDVINVPQIFVE   89 (251)
Q Consensus        77 g~g~~~vP~i~i~   89 (251)
                        +...+|.+++-
T Consensus        79 --~v~gtPt~~~~   89 (112)
T PF13098_consen   79 --GVNGTPTIVFL   89 (112)
T ss_dssp             --T--SSSEEEEC
T ss_pred             --CCCccCEEEEE
Confidence              56778999753

...

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=94.63  E-value=0.16  Score=44.29  Aligned_cols=64  Identities=17%  Similarity=0.137  Sum_probs=51.8

Q ss_pred             CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      ..|++|.+++-+|...|++|+.+.++.... .+++.++.  ....+|.+..+|..|.....+.+..+
T Consensus        17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862        17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEeecHHHHHHHHH
Confidence            469999999999999999999988866532 35677765  36789999889999988888777655

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.62  E-value=0.16  Score=35.52  Aligned_cols=59  Identities=15%  Similarity=0.153  Sum_probs=42.8

Q ss_pred             chHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHH
Q psy15946        120 RCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERL  180 (251)
Q Consensus       120 ~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l  180 (251)
                      .+.+++.+|...|++|+.++++...  ....++.+...  ...+|.+..+ |..+.....+.+.
T Consensus        10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np--~~~vP~l~~~~g~~l~eS~aI~~y   71 (77)
T cd03057          10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP--KGQVPALVLDDGEVLTESAAILQY   71 (77)
T ss_pred             chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC--CCCCCEEEECCCcEEEcHHHHHHH
Confidence            4778999999999999988775432  23466777654  7899999887 7766665555543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>PHA02278 thioredoxin-like protein

Probab=94.58  E-value=0.12  Score=39.00  Aligned_cols=60  Identities=12%  Similarity=0.245  Sum_probs=40.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+-|+++|      |+.|+.+..+|++.      .+++..+|++.++....++.+..+  ..++|.+  |-+|+.+
T Consensus        18 vV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~--I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         18 IVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD--IMSTPVLIGYKDGQLV   85 (103)
T ss_pred             EEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC--CccccEEEEEECCEEE
Confidence            45567776      99999888777543      245777888765332445666665  7788984  5578754

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=94.56  E-value=0.13  Score=43.35  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+.+|+..      .|++|.+++-+|+..|++|+.+.++.. ....++.++.  ....||.+..+|..+-....+.+
T Consensus        10 ~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481         10 VMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLN--PYQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             eeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhC--CCCCCCEEEECCEEeeCHHHHHH
Confidence            47789877      499999999999999999999988653 2234666665  46799999999887776666655

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.071  Score=47.70  Aligned_cols=63  Identities=14%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~g   94 (251)
                      .+-+|.|.+||      |+.|++....|++.-      +..-.+|++.++.    +...+  |..++|.+  |++|+.+.
T Consensus        44 ~PVlV~fWap~------~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqf--giqsIPtV~af~dGqpVd  111 (304)
T COG3118          44 VPVLVDFWAPW------CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQF--GVQSIPTVYAFKDGQPVD  111 (304)
T ss_pred             CCeEEEecCCC------CchHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHh--CcCcCCeEEEeeCCcCcc
Confidence            35688889998      999999999999852      4556777777777    56677  58889988  58999998


Q ss_pred             ccc
Q psy15946         95 TWQ   97 (251)
Q Consensus        95 G~~   97 (251)
                      ||.
T Consensus       112 gF~  114 (304)
T COG3118         112 GFQ  114 (304)
T ss_pred             ccC
Confidence            876

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=94.50  E-value=0.21  Score=34.57  Aligned_cols=67  Identities=16%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+|...      ..+.+.+++-+|+..|++|+.++++..  ....+++.+..  ....+|.+..+|..+.....+.+
T Consensus         2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n--P~~~vP~L~~~~~~l~eS~aI~~   70 (73)
T cd03047           2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN--PNGRVPVLEDGDFVLWESNAILR   70 (73)
T ss_pred             EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC--CCCCCCEEEECCEEEECHHHHHH
Confidence            466655      377889999999999999998877542  22345666665  36799999888877766555443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=94.49  E-value=0.12  Score=38.03  Aligned_cols=56  Identities=23%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i  171 (251)
                      +++|.++|      |+.|..+...|++      ..+.+..+|++.+++    +.+..+  ...+|.++  -+|+.+
T Consensus        17 lv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~--v~~vPt~~i~~~g~~v   80 (97)
T cd02949          17 LVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAG--IMGTPTVQFFKDKELV   80 (97)
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCC--CeeccEEEEEECCeEE
Confidence            45666675      9999999888866      347788888877754    444554  67889854  366544

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.035  Score=51.44  Aligned_cols=51  Identities=29%  Similarity=0.724  Sum_probs=32.8

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...++.  .....|+.|+-.|-+   +|+.|
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C  205 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF--RVTTTCPKCYGNGKIISNPCKSC  205 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEecCcee--EEeeecCCCCCcccccCCCCCCC
Confidence            467888888774      5688888887664322221  135678888777754   56666

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=94.38  E-value=0.095  Score=38.14  Aligned_cols=53  Identities=8%  Similarity=0.145  Sum_probs=37.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|.++|      |+.|+.+...|++.      .+.+..+|++.+++    +.+.+  +..++|.+++
T Consensus        14 ~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~i~~~Pt~~~   72 (96)
T cd02956          14 PVVVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQF--GVQALPTVYL   72 (96)
T ss_pred             eEEEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHc--CCCCCCEEEE
Confidence            4678888887      99999998887753      24456667776655    44445  4677899864

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PTZ00051 thioredoxin; Provisional

Probab=94.35  E-value=0.11  Score=37.90  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|..+|      |+.|+++...|++.     ++.|..+|++....    +.+.+  +...+|.+.+
T Consensus        20 ~vli~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   77 (98)
T PTZ00051         20 LVIVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKE--NITSMPTFKV   77 (98)
T ss_pred             eEEEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHC--CCceeeEEEE
Confidence            4577788887      99999998888763     46677777765544    44444  4567888754

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=94.31  E-value=0.11  Score=39.51  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      .-|+.|.++|      |+.|+.+...|++.     ++.|..+|++.+     ++.+.+  +..++|.+.  -+|+.+
T Consensus        26 ~vvv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~--~i~~~Pt~~~f~~G~~v   89 (113)
T cd02957          26 RVVVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYL--DIKVLPTLLVYKNGELI   89 (113)
T ss_pred             EEEEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhc--CCCcCCEEEEEECCEEE
Confidence            4567788897      99999999888763     355666666544     455555  567789884  455543

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.15  E-value=0.048  Score=50.76  Aligned_cols=53  Identities=23%  Similarity=0.580  Sum_probs=34.3

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...+.  .--.....|+.|+-.|-+   +|+.|
T Consensus       141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  204 (377)
T PRK14298        141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVC  204 (377)
T ss_pred             eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCC
Confidence            567888888775      678999988766432211  111135678888888743   57766

>TIGR01068 thioredoxin thioredoxin

Probab=94.07  E-value=0.13  Score=37.12  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=38.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|.++|      |++|+.+...|++.      .+.|..+|.+.+.+    +.+.+  +...+|.+++
T Consensus        16 ~vvi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~P~~~~   74 (101)
T TIGR01068        16 PVLVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKY--GIRSIPTLLL   74 (101)
T ss_pred             cEEEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHc--CCCcCCEEEE
Confidence            4677777886      99999998777652      36777778777665    34445  5677998865

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.03  E-value=0.11  Score=36.45  Aligned_cols=54  Identities=13%  Similarity=0.111  Sum_probs=39.7

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++|+.+.      + .+.+++-+|+.++++|+.++++...  ...+++.++.  ....+|++..+
T Consensus         2 ~Ly~~~~------~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n--p~~~vP~l~~~   57 (77)
T cd03057           2 KLYYSPG------A-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN--PKGQVPALVLD   57 (77)
T ss_pred             EEEeCCC------C-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC--CCCCCCEEEEC
Confidence            5787773      4 4789999999999999988776533  2245667665  46789999775

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=94.02  E-value=0.11  Score=40.04  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHH---------HcCCccceeeccCCHH---------HHHHHHHHhCCCCCCCC
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILR---------THLVKFDDKDVFMSRE---------TQQEFKERLGTDVINVP   84 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~---------~~~v~~~e~dv~~d~~---------~~~el~~~~g~g~~~vP   84 (251)
                      ..-++.|+++|      |++|++....+.         +.++.+..+|++.+..         ...++...+  +...+|
T Consensus        15 k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~--~v~~~P   86 (125)
T cd02951          15 KPLLLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY--RVRFTP   86 (125)
T ss_pred             CcEEEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc--CCcccc
Confidence            45788899997      999999875442         1235556667665421         124555555  467789


Q ss_pred             ceee
Q psy15946         85 QIFV   88 (251)
Q Consensus        85 ~i~i   88 (251)
                      .+++
T Consensus        87 t~~~   90 (125)
T cd02951          87 TVIF   90 (125)
T ss_pred             EEEE
Confidence            9754

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.01  E-value=0.15  Score=37.53  Aligned_cols=54  Identities=13%  Similarity=0.206  Sum_probs=38.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |+.|+++...+++.      .+.+-.+|++.++.    +.+.+  +...+|.+++
T Consensus        19 ~~~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   78 (101)
T cd03003          19 EIWFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQ--GVNSYPSLYV   78 (101)
T ss_pred             CeEEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHc--CCCccCEEEE
Confidence            44678888997      99999998887663      24566778777655    33344  4567898854

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=93.96  E-value=0.05  Score=50.86  Aligned_cols=51  Identities=31%  Similarity=0.696  Sum_probs=31.3

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...++.  .....|+.|+-.|-+   +|+.|
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C  217 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFF--SMASTCPECGGEGRVITDPCSVC  217 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceE--EEEEECCCCCCCCcccCCcCCCC
Confidence            467777777664      4588888886654322221  134577777777754   46666

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=93.91  E-value=0.16  Score=36.90  Aligned_cols=54  Identities=15%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |+.|+++...|++.      .+.+..+|++..++    +.+.+  +...+|.+++
T Consensus        15 ~~v~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~   74 (97)
T cd02984          15 KLLVLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKF--EITAVPTFVF   74 (97)
T ss_pred             CEEEEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhc--CCccccEEEE
Confidence            44678888887      99999998888762      35566666665544    44445  4567897753

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=93.91  E-value=0.17  Score=37.86  Aligned_cols=54  Identities=11%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|++....+++.            .+.|-.+|.+.+++    +.+.+  +..++|.+++
T Consensus        19 ~~vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~--~v~~~Ptl~~   84 (108)
T cd02996          19 ELVLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRY--RINKYPTLKL   84 (108)
T ss_pred             CEEEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhC--CCCcCCEEEE
Confidence            34678889998      99999998877532            25566677776654    55555  5678998853

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.81  E-value=0.18  Score=37.03  Aligned_cols=53  Identities=13%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|.++|      |++|+++...|++.       ++.+..+|.+.+++    +.+.+  +..++|.+++
T Consensus        18 ~~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~   77 (101)
T cd02994          18 EWMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRF--FVTALPTIYH   77 (101)
T ss_pred             CEEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHc--CCcccCEEEE
Confidence            3688899998      99999988887653       35667777776665    33344  4677899976

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=93.79  E-value=0.21  Score=37.82  Aligned_cols=54  Identities=13%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-+|.|.++|      |+.|+.....+++       .++.+..+|++.++.    +...+  +..++|.+++
T Consensus        25 ~~vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~--~V~~~Pt~~i   85 (111)
T cd02963          25 KPYLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKL--GAHSVPAIVG   85 (111)
T ss_pred             CeEEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHc--CCccCCEEEE
Confidence            45788899998      9999887766543       246667777776655    33444  5678998863

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=93.78  E-value=0.079  Score=36.71  Aligned_cols=39  Identities=26%  Similarity=0.669  Sum_probs=27.0

Q ss_pred             CCCccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccc
Q psy15946        197 DACTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG  244 (251)
Q Consensus       197 ~~~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng  244 (251)
                      .....|..|+|.+.+               +|+.|+|+-+++ .        ..+|+.|+-+|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------~~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------KDPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------SSB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------CCCCCCCCCcC
Confidence            456789999999876               799999998874 1        35899998664

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=93.77  E-value=0.19  Score=37.20  Aligned_cols=53  Identities=17%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|.++|      |+.|+.+...+++.      .+.+..+|.+.+++    +.+.+  +...+|.+++
T Consensus        21 ~v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~   79 (104)
T cd03004          21 PWLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQA--NIRAYPTIRL   79 (104)
T ss_pred             eEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHc--CCCcccEEEE
Confidence            5678888997      99999987777652      25667777776554    44444  5677898853

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=93.76  E-value=0.062  Score=49.83  Aligned_cols=53  Identities=25%  Similarity=0.700  Sum_probs=33.0

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...+  +.--.....|+.|+-.|.+   +|+.|
T Consensus       152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  215 (369)
T PRK14282        152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHEC  215 (369)
T ss_pred             cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCC
Confidence            467888888764      57888888876642211  1101125688888887754   56666

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=93.74  E-value=0.17  Score=36.20  Aligned_cols=53  Identities=13%  Similarity=0.156  Sum_probs=36.2

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----c----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-+++|+++|      |++|+++...+++    .    .+.+..+|.+.+.    ++.+.+  +...+|.+++
T Consensus        17 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~--~i~~~Pt~~~   77 (101)
T cd02961          17 DVLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEY--GVRGYPTIKL   77 (101)
T ss_pred             cEEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhC--CCCCCCEEEE
Confidence            6788999997      9999999888765    2    2444555555433    345555  4677898853

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=93.65  E-value=0.13  Score=39.60  Aligned_cols=58  Identities=14%  Similarity=0.074  Sum_probs=37.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..+-++.|+++|      |++|+.....+.+      ....|..+|++.+.+...+.....   ...+|.+++
T Consensus        19 ~kpVlV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~---g~~vPt~~f   82 (117)
T cd02959          19 GKPLMLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD---GGYIPRILF   82 (117)
T ss_pred             CCcEEEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC---CCccceEEE
Confidence            345677788998      9999999888776      234677788887654332211121   124888853

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=93.64  E-value=0.062  Score=49.87  Aligned_cols=53  Identities=28%  Similarity=0.632  Sum_probs=35.0

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+      ...|+.|+|+-.++...+  +.--.....|+.|+-.|.+   +|+.|
T Consensus       138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  201 (371)
T PRK14287        138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATC  201 (371)
T ss_pred             eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCC
Confidence            56788888877      467999999976643221  1000124689999988865   57776

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.60  E-value=0.18  Score=36.60  Aligned_cols=55  Identities=13%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|++|+++|      |+.|++....|++.        .+.+..+|.+.+++    +.+.+  +...+|.+++
T Consensus        13 ~~~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~--~i~~~P~~~~   75 (102)
T TIGR01126        13 NKDVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRF--GVSGFPTIKF   75 (102)
T ss_pred             CCcEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhC--CCCcCCEEEE
Confidence            455799999998      99999877766552        25556666665544    44455  4677998854

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=93.59  E-value=0.061  Score=49.82  Aligned_cols=51  Identities=27%  Similarity=0.687  Sum_probs=31.8

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...++.  .....|+.|+-.|-+   +|+.|
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C  203 (366)
T PRK14294        144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF--SIRTTCPRCRGMGKVIVSPCKTC  203 (366)
T ss_pred             cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE--EEEeeCCCCCCcCeecCcCCCCC
Confidence            457778877764      4688888886654322221  135677777777754   56665

>PRK14289 chaperone protein DnaJ; Provisional

Probab=93.55  E-value=0.064  Score=50.00  Aligned_cols=53  Identities=26%  Similarity=0.605  Sum_probs=35.2

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...+  +.--.....|+.|+-.|-+   +|+.|
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  217 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKC  217 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCC
Confidence            567888888775      67999999976653221  0111135788888888854   67776

>PRK14301 chaperone protein DnaJ; Provisional

Probab=93.55  E-value=0.057  Score=50.15  Aligned_cols=51  Identities=31%  Similarity=0.685  Sum_probs=30.5

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++....+.  .....|+.|+-.|-+   +|+.|
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C  203 (373)
T PRK14301        144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFF--QIAVPCPVCRGEGRVITHPCPKC  203 (373)
T ss_pred             cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeE--EEEEeCCCCCceeeecCCCCCCC
Confidence            456777777764      4577777776654322221  125677777766643   56665

>PRK14286 chaperone protein DnaJ; Provisional

Probab=93.43  E-value=0.063  Score=49.88  Aligned_cols=51  Identities=31%  Similarity=0.634  Sum_probs=31.2

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...++.  .....|+.|+-.|.+   +|+.|
T Consensus       150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C  209 (372)
T PRK14286        150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF--SVATTCPTCRGKGTVISNPCKTC  209 (372)
T ss_pred             cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceE--EEEEeCCCCCceeeEecccCCCC
Confidence            467888888774      5688888886654322221  134577777776643   56665

>PRK14288 chaperone protein DnaJ; Provisional

Probab=93.29  E-value=0.077  Score=49.24  Aligned_cols=50  Identities=32%  Similarity=0.753  Sum_probs=26.8

Q ss_pred             ccccccCCcce-----eeCCCCCCCceeeecccccccccceeCCCCCcccc---cccCCC
Q psy15946        200 TICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGL---VKCYAC  251 (251)
Q Consensus       200 ~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl---~~C~~C  251 (251)
                      ..|..|.|.+.     ..|+.|+|+-.+.....+.  .....|+.|+-.|.   .+|+.|
T Consensus       141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~~~~~C~~C  198 (369)
T PRK14288        141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM--SFAQTCGACQGKGKIIKTPCQAC  198 (369)
T ss_pred             ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE--EEEEecCCCCCCceEccccCccC
Confidence            46667766663     4577777765554332221  12346666666663   345554

>PRK14290 chaperone protein DnaJ; Provisional

Probab=93.15  E-value=0.083  Score=48.90  Aligned_cols=53  Identities=25%  Similarity=0.620  Sum_probs=31.8

Q ss_pred             CccccccCCcce-----eeCCCCCCCceeeeccc--ccccccceeCCCCCccc---ccccCCC
Q psy15946        199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVG---LVKCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cneng---l~~C~~C  251 (251)
                      ...|..|.|.+.     ..|+.|+|+-.+...-.  +.......+|+.|+-.|   ..+|+.|
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C  211 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRC  211 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence            467888888775     56888888865432111  10001135788888777   3467766

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=93.15  E-value=0.16  Score=35.22  Aligned_cols=56  Identities=11%  Similarity=0.119  Sum_probs=39.3

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      ++|+.+       -+.+.+++-+|+..+++|+.+.++..  .....++.+..  ....+|.+..+|.
T Consensus         2 ~l~~~~-------~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~--p~~~vP~l~~~g~   59 (76)
T cd03046           2 TLYHLP-------RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN--PLGKVPVLVDGDL   59 (76)
T ss_pred             EEEeCC-------CCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC--CCCCCCEEEECCE
Confidence            567665       25688999999999999998877643  22235566554  4577999976543

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>PRK14293 chaperone protein DnaJ; Provisional

Probab=93.11  E-value=0.083  Score=49.06  Aligned_cols=53  Identities=26%  Similarity=0.610  Sum_probs=34.9

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...+.  ..-....+|+.|+-.|-+   +|+.|
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  206 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDAC  206 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCC
Confidence            567888888765      469999999766532211  100124688888888866   67766

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=93.03  E-value=0.34  Score=40.50  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=27.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHH----HHHHHHcCCccceeeccCC
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKV----KQILRTHLVKFDDKDVFMS   65 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~----k~~L~~~~v~~~e~dv~~d   65 (251)
                      -+|++|..+|      ||+|++.    +++-+++++.+.-+.++.+
T Consensus        71 ~~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~  110 (181)
T PRK13728         71 WKVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ  110 (181)
T ss_pred             ceEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence            3599999998      9999997    5666667877766666543

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=93.01  E-value=0.29  Score=35.78  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -++.|.++|      |+.|++....|.+.      .+.+..+|.+.+++    +.+.+  +...+|.+++
T Consensus        21 vlv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~--~i~~~P~~~~   78 (103)
T cd03001          21 WLVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQY--GVRGFPTIKV   78 (103)
T ss_pred             EEEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHC--CCCccCEEEE
Confidence            577888887      99999998777652      35566677766554    44455  4677998854

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=92.99  E-value=0.33  Score=37.52  Aligned_cols=57  Identities=12%  Similarity=0.300  Sum_probs=40.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG  172 (251)
                      |+-|+.+|      |+.|..+..+|++.-      +.|..+|++.+++    +.+..+  ...+|.+  |-+|+.++
T Consensus        18 VV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~--V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          18 VIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYE--LYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcC--CCCCCEEEEEECCEEEE
Confidence            45588887      999998888774432      4577888887754    555555  6789984  56787654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=92.97  E-value=0.36  Score=36.82  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=39.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG  172 (251)
                      |+.|+++|      |+.|..+...|++     .++++..+|++..++    +.+..+  ...+|.+  |-+|+.++
T Consensus        26 vV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~--v~~vPt~l~fk~G~~v~   89 (113)
T cd02989          26 VCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLN--IKVLPTVILFKNGKTVD   89 (113)
T ss_pred             EEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCC--CccCCEEEEEECCEEEE
Confidence            45566665      9999988887755     247788888877654    445554  6788884  66887554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0406|consensus

Probab=92.96  E-value=0.27  Score=42.62  Aligned_cols=63  Identities=13%  Similarity=0.119  Sum_probs=46.9

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +.|.||+.-.      ||+-++++-.|+.++|+|+.++++... --+-+.+... -...+|++.-+|+.+.
T Consensus         8 ~~vrL~~~w~------sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np-~hkKVPvL~Hn~k~i~   70 (231)
T KOG0406|consen    8 GTVKLLGMWF------SPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNP-VHKKVPVLEHNGKPIC   70 (231)
T ss_pred             CeEEEEEeec------ChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhcc-ccccCCEEEECCceeh
Confidence            6899999985      999999999999999999888776542 1122333321 2356999999998854

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=92.96  E-value=0.21  Score=40.55  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=40.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      -|+.|.++|      |+.|+.+...|++.       ++.+-.+|++.+++..+++.-....+...+|+++  -+|+.+
T Consensus        50 vvV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v  121 (152)
T cd02962          50 WLVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV  121 (152)
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence            488899998      99999998777642       3677888998888654443211000123478774  555543

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=92.94  E-value=0.094  Score=48.77  Aligned_cols=53  Identities=25%  Similarity=0.662  Sum_probs=34.7

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.|      ...|+.|+|+..++.....  .--....+|+.|+-.|..   +|..|
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  209 (378)
T PRK14283        146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNC  209 (378)
T ss_pred             eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCC
Confidence            46788888865      4579999999776532211  111124688888888865   67776

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=92.92  E-value=0.35  Score=35.98  Aligned_cols=54  Identities=9%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeecc-CCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~-~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|+.....|++.     ++.+-.+|.+ ..+    ++.+.+  +..++|++++
T Consensus        19 ~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~--~V~~~PT~~l   78 (100)
T cd02999          19 DYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRY--GVVGFPTILL   78 (100)
T ss_pred             CEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhc--CCeecCEEEE
Confidence            44688899998      99999998887763     3445555554 333    344555  4677898864

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=92.92  E-value=0.17  Score=43.13  Aligned_cols=66  Identities=23%  Similarity=0.386  Sum_probs=35.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcC-----------Ccc----ceeeccCCHHH--HH-HHHHHhCCCCCCCCcee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----------VKF----DDKDVFMSRET--QQ-EFKERLGTDVINVPQIF   87 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----------v~~----~e~dv~~d~~~--~~-el~~~~g~g~~~vP~i~   87 (251)
                      |.|||..+      |+.|-.|-++|.++.           |+|    --.|-..++++  |+ .+.+.+|.+..-.|+++
T Consensus         2 VELFTSQG------CsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v   75 (202)
T PF06764_consen    2 VELFTSQG------CSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV   75 (202)
T ss_dssp             EEEEE-TT-------TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred             eeEecCCC------CCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence            78999997      999999999999842           222    12344445543  22 34445554556679999


Q ss_pred             eeccc-ccccc
Q psy15946         88 VEGVH-IGTWQ   97 (251)
Q Consensus        88 i~g~~-~gG~~   97 (251)
                      |||+. ..|.+
T Consensus        76 VnG~~~~~g~~   86 (202)
T PF06764_consen   76 VNGREHRVGSD   86 (202)
T ss_dssp             ETTTEEEETT-
T ss_pred             ECCeeeeeccC
Confidence            99965 45544

The function of this family is unknown.; PDB: 2AXO_A.

>PRK10996 thioredoxin 2; Provisional

Probab=92.86  E-value=0.36  Score=38.23  Aligned_cols=54  Identities=17%  Similarity=0.334  Sum_probs=38.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|++....|.+.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        53 k~vvv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~V~~~Ptlii  112 (139)
T PRK10996         53 LPVVIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARF--RIRSIPTIMI  112 (139)
T ss_pred             CeEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhc--CCCccCEEEE
Confidence            34688888887      99999987776652      35566677777665    34444  4677898865

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=92.85  E-value=0.56  Score=34.52  Aligned_cols=51  Identities=18%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             hcCCceeEEEcCCCHH--HHHHHHHHhCCCCCCCceEEECCeeeC-ChHHHHHH
Q psy15946        130 THLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEGVHIG-DADAIERL  180 (251)
Q Consensus       130 ~~~v~~~e~dv~~~~~--~~~el~~~~g~~~~~vP~vfi~g~~iG-G~d~l~~l  180 (251)
                      +....|.++|+...++  ..+++.++.-...--.|.|.|+|+.|| |.-.|+..
T Consensus        35 ~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~LK~I   88 (93)
T PF07315_consen   35 DQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQLKDI   88 (93)
T ss_dssp             TS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--HHHH
T ss_pred             CCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCccHHHH
Confidence            3445688999976543  344444443234677899999999998 54454443

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=92.82  E-value=0.18  Score=39.23  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CeEEEEee-------cCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHH---HHHHHHhCCCCC-CCCce
Q psy15946         24 GKIVMYST-------TMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQ---QEFKERLGTDVI-NVPQI   86 (251)
Q Consensus        24 ~~vvvyt~-------~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~---~el~~~~g~g~~-~vP~i   86 (251)
                      .-|+.|.+       +|      |++|+.+.-.|++    .  ++.|..+|++..+...   .++....  +.. .+|.+
T Consensus        23 ~vvV~F~A~~~~~~~~W------C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~--~I~~~iPT~   94 (119)
T cd02952          23 PIFILFYGDKDPDGQSW------CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP--KLTTGVPTL   94 (119)
T ss_pred             eEEEEEEccCCCCCCCC------CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc--CcccCCCEE
Confidence            45777888       88      9999988766654    2  3678888887754222   3444433  344 78988


Q ss_pred             ee
Q psy15946         87 FV   88 (251)
Q Consensus        87 ~i   88 (251)
                      ++
T Consensus        95 ~~   96 (119)
T cd02952          95 LR   96 (119)
T ss_pred             EE
Confidence            64

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=92.74  E-value=0.091  Score=49.15  Aligned_cols=51  Identities=25%  Similarity=0.550  Sum_probs=29.6

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|++.      ..|+.|+|+-.++....+-  .....|+.|+-.|.+   +|+.|
T Consensus       173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~i~~~C~~C  232 (392)
T PRK14279        173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF--GFSEPCTDCRGTGSIIEDPCEEC  232 (392)
T ss_pred             cccCCCCccccccCCCCCCCCCCCcceEEEEEEecce--EEEEecCCCCceeEEeCCcCCCC
Confidence            467777777775      4577777776554222111  134667777766643   45555

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=92.73  E-value=0.34  Score=36.02  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=35.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc----C---CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----L---VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~---v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |++|+.....|+..    +   +.+..+|++ +++    +.+.+  +...+|.+++
T Consensus        18 ~~vvv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~--~v~~~Pt~~~   77 (102)
T cd02948          18 GLTVVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRY--RGKCEPTFLF   77 (102)
T ss_pred             CeEEEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHc--CCCcCcEEEE
Confidence            44678888997      99999988887653    2   345566666 333    33444  5677897754

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK14297 chaperone protein DnaJ; Provisional

Probab=92.73  E-value=0.1  Score=48.51  Aligned_cols=53  Identities=23%  Similarity=0.570  Sum_probs=33.3

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++...+.  .--....+|+.|+-.|.+   +|+.|
T Consensus       148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  211 (380)
T PRK14297        148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKC  211 (380)
T ss_pred             eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCC
Confidence            567888888774      568888888765422111  000135688888877754   57666

>PRK14295 chaperone protein DnaJ; Provisional

Probab=92.72  E-value=0.088  Score=49.19  Aligned_cols=51  Identities=24%  Similarity=0.604  Sum_probs=32.6

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++.....  -....+|+.|+-.|.+   +|+.|
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C  225 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGG--FSLSEPCPDCKGRGLIADDPCLVC  225 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecc--eEEEEecCCCcceeEEeccCCCCC
Confidence            467888887774      568888888665432211  0135678888877755   46666

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=92.72  E-value=0.11  Score=47.90  Aligned_cols=53  Identities=21%  Similarity=0.506  Sum_probs=32.1

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+      ...|+.|+|+-.++...+.  .--....+|+.|+-.|.+   +|+.|
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  206 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTC  206 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCC
Confidence            46788888877      4568888888665422210  000124578888777754   47666

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=92.69  E-value=0.11  Score=48.40  Aligned_cols=53  Identities=26%  Similarity=0.573  Sum_probs=31.7

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeecccc--cccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHF--TTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~--~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+      ...|+.|+|+-.++...+.  .--.....|+.|+-.|.+   +|+.|
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  206 (376)
T PRK14280        143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTC  206 (376)
T ss_pred             eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCC
Confidence            46788888876      3568888888665432211  000124577777777753   46666

>PRK09381 trxA thioredoxin; Provisional

Probab=92.68  E-value=0.41  Score=35.66  Aligned_cols=55  Identities=11%  Similarity=0.238  Sum_probs=38.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |+.|+.+...|++    +  .+.+..+|++.++..    .+.+  +..++|.+++
T Consensus        21 ~~~vvv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~   81 (109)
T PRK09381         21 DGAILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKY--GIRGIPTLLL   81 (109)
T ss_pred             CCeEEEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhC--CCCcCCEEEE
Confidence            345778888887      9999999877764    2  256677788777653    3344  4677998865

>KOG0910|consensus

Probab=92.59  E-value=0.21  Score=40.38  Aligned_cols=60  Identities=17%  Similarity=0.276  Sum_probs=44.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      ..+-+|-|.++|      |..|+.+.-.|++.      .+.+.-+|++.+++..++    +  +..++|+++  -||+..
T Consensus        61 ~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y--~I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   61 DVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----Y--EISAVPTVLVFKNGEKV  128 (150)
T ss_pred             CCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----c--ceeeeeEEEEEECCEEe
Confidence            456789999998      99999999998874      256777888888885433    3  356688884  556543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=92.58  E-value=0.093  Score=32.16  Aligned_cols=32  Identities=13%  Similarity=0.481  Sum_probs=24.1

Q ss_pred             eeeCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946        210 LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDE  242 (251)
Q Consensus       210 ~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne  242 (251)
                      .+-||.|+..-++- ++......+.+||+.|.+
T Consensus         2 ~i~CP~C~~~f~v~-~~~l~~~~~~vrC~~C~~   33 (37)
T PF13719_consen    2 IITCPNCQTRFRVP-DDKLPAGGRKVRCPKCGH   33 (37)
T ss_pred             EEECCCCCceEEcC-HHHcccCCcEEECCCCCc
Confidence            36799999998873 333445677999999976

>PRK14291 chaperone protein DnaJ; Provisional

Probab=92.53  E-value=0.1  Score=48.58  Aligned_cols=51  Identities=29%  Similarity=0.737  Sum_probs=35.0

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeecccccccccceeCCCCCccccc--ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV--KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~--~C~~C  251 (251)
                      ...|..|.|.+      ...|+.|+|+-.++....+.  .....|+.|+-.|.+  +|+.|
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~~~~C~~C  214 (382)
T PRK14291        156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFF--RISQTCPTCGGEGVLREPCSKC  214 (382)
T ss_pred             eccCCCCccccCCCCCCCccCCCCCCceEEEEecceE--EEEecCCCCCCceEEccCCCCC
Confidence            56788888877      46799999997765433221  135688888888844  56666

>PRK14278 chaperone protein DnaJ; Provisional

Probab=92.49  E-value=0.13  Score=47.96  Aligned_cols=53  Identities=25%  Similarity=0.657  Sum_probs=29.3

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.      ..|+.|+|+-.++....  +.--.....|+.|+-.|-+   +|+.|
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  202 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHEC  202 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCC
Confidence            456777777663      46777887765432111  0000124567777766643   46665

>PRK14296 chaperone protein DnaJ; Provisional

Probab=92.43  E-value=0.12  Score=48.10  Aligned_cols=53  Identities=26%  Similarity=0.587  Sum_probs=32.0

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeeccccc--ccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNHFT--TELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~--~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|++.      ..|+.|+|+-.++..-++.  .-.....|+.|+-.|-+   +|+.|
T Consensus       149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C  212 (372)
T PRK14296        149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNC  212 (372)
T ss_pred             eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCC
Confidence            467888888775      4688888886654221110  00123577777777754   46666

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=92.37  E-value=0.39  Score=37.37  Aligned_cols=55  Identities=15%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             CCeEEEEeecCCCCCCCCch--HH----------HHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHR--CL----------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~--C~----------~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...|++|..+|     +|+.  |+          .+.++|+..++.+..+|++.+++.    .+.+  +..++|++.+
T Consensus        27 ~~~vvv~f~a~-----wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L----a~~~--~I~~iPTl~l   93 (120)
T cd03065          27 DVLCLLYHEPV-----ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV----AKKL--GLDEEDSIYV   93 (120)
T ss_pred             CceEEEEECCC-----cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH----HHHc--CCccccEEEE
Confidence            33566666666     5876  97          345566667899999999988774    4445  4667898853

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK14276 chaperone protein DnaJ; Provisional

Probab=92.36  E-value=0.12  Score=48.03  Aligned_cols=53  Identities=23%  Similarity=0.562  Sum_probs=31.4

Q ss_pred             CccccccCCcce------eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL------LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|+|.      ..|+.|+|+-.++...+  +.--.....|+.|+-.|-+   +|+.|
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  209 (380)
T PRK14276        146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTC  209 (380)
T ss_pred             cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCC
Confidence            567888888774      56888888866542211  0000124577777777643   46665

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=92.31  E-value=0.37  Score=35.13  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccC-CHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~-d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|+++|      |+.|++....++..        .+.+..+|.+. ++.    +.+.+  +...+|.+++
T Consensus        20 ~~~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~--~i~~~P~~~~   81 (105)
T cd02998          20 DVLVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKY--GVSGFPTLKF   81 (105)
T ss_pred             cEEEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhC--CCCCcCEEEE
Confidence            5688889997      99999887777652        24455566666 443    34444  4567898864

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK14296 chaperone protein DnaJ; Provisional

Probab=92.19  E-value=0.14  Score=47.63  Aligned_cols=38  Identities=37%  Similarity=0.807  Sum_probs=30.8

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|..++.          ..+|+.|+-.|.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  218 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII----------KNKCKNCKGKGKY  218 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee----------cccccCCCCceEE
Confidence            4679999999864               799999998873          2469999988865

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=92.16  E-value=0.48  Score=35.90  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=39.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeCC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIGD  173 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iGG  173 (251)
                      |+.|+++|      |+.|..+...|++.     ++.|..+|++.+     ++.+..+  ...+|.+  |-+|+.++-
T Consensus        28 vv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~--i~~~Pt~~~f~~G~~v~~   91 (113)
T cd02957          28 VVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD--IKVLPTLLVYKNGELIDN   91 (113)
T ss_pred             EEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC--CCcCCEEEEEECCEEEEE
Confidence            44566675      99999888877542     456666776533     5666665  6789984  678887653

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=92.06  E-value=0.11  Score=36.11  Aligned_cols=50  Identities=20%  Similarity=0.168  Sum_probs=35.6

Q ss_pred             CchHHHHHHHHHHcCCccceeeccC--CHHH-HHHHHHHhCCCCCCCCceee-ecc
Q psy15946         40 YHRCLKVKQILRTHLVKFDDKDVFM--SRET-QQEFKERLGTDVINVPQIFV-EGV   91 (251)
Q Consensus        40 C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~-~~el~~~~g~g~~~vP~i~i-~g~   91 (251)
                      ||++.+++-+|+.+|++|+..-+..  +... ..++.++.  +..+||.+.. +|+
T Consensus         2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~--p~~~VP~L~~~~g~   55 (70)
T PF13409_consen    2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALN--PRGKVPVLVDPDGT   55 (70)
T ss_dssp             -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHS--TT-SSSEEEETTTE
T ss_pred             chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccC--cCeEEEEEEECCCC
Confidence            9999999999999999998766632  2222 25677776  5678999987 444

...

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=92.02  E-value=0.31  Score=35.54  Aligned_cols=53  Identities=17%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-++.|.++|      |+.|+.....|++.         .+.+..+|.+.++.    +.+.+  +...+|.+++
T Consensus        18 ~~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   79 (102)
T cd03005          18 NHFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF--QVRGYPTLLL   79 (102)
T ss_pred             CEEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc--CCCcCCEEEE
Confidence            4788889998      99999887666542         34556666666554    33344  4677898754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=91.99  E-value=0.48  Score=35.58  Aligned_cols=57  Identities=16%  Similarity=0.176  Sum_probs=37.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|.++|      |++|+++...|.+.       ++.+-.+|++.+..  .-..+.+  +...+|.+++
T Consensus        21 ~k~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~--~~~~~~~--~v~~~Pti~~   84 (109)
T cd02993          21 NQSTLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR--EFAKEEL--QLKSFPTILF   84 (109)
T ss_pred             CCCEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch--hhHHhhc--CCCcCCEEEE
Confidence            356889999998      99999998887763       34556666665211  1122334  4677898853

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK14292 chaperone protein DnaJ; Provisional

Probab=91.95  E-value=0.15  Score=47.33  Aligned_cols=53  Identities=26%  Similarity=0.610  Sum_probs=32.7

Q ss_pred             CccccccCCcc-------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR-------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~-------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+       ...|+.|+|+-.+.....  +.---....|+.|+-.|..   +|+.|
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  203 (371)
T PRK14292        139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVC  203 (371)
T ss_pred             eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCC
Confidence            46788888876       456888888865531110  0000014578888888855   67766

>PRK14285 chaperone protein DnaJ; Provisional

Probab=91.90  E-value=0.16  Score=47.05  Aligned_cols=39  Identities=31%  Similarity=0.767  Sum_probs=31.3

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.|.+           +|+.|+|..++.          .-+|+.|+-.|.++
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~  212 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----------SNPCKSCKGKGSLK  212 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc----------CCCCCCCCCCCEEe
Confidence            4679999998854           899999998873          24799999988753

>KOG0406|consensus

Probab=91.89  E-value=0.63  Score=40.39  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.|.||+.-      .||+-.+++-.|+..||+|+.++++... --+-|.+.. -.+..+|.+..||+.|...-.+.+..
T Consensus         8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~n-p~hkKVPvL~Hn~k~i~ESliiveYi   79 (231)
T KOG0406|consen    8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKN-PVHKKVPVLEHNGKPICESLIIVEYI   79 (231)
T ss_pred             CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhc-cccccCCEEEECCceehhhHHHHHHH
Confidence            668899877      5999999999999999999988776542 123344443 14678999999999987666555544


Q ss_pred             Hc
Q psy15946        182 ES  183 (251)
Q Consensus       182 e~  183 (251)
                      ++
T Consensus        80 De   81 (231)
T KOG0406|consen   80 DE   81 (231)
T ss_pred             Hh
Confidence            43

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=91.77  E-value=0.59  Score=41.33  Aligned_cols=62  Identities=19%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .||+|.+++-+|+.+|++|+.+.++... ...++.++.  ....+|.+..+|..|-....+.+..
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN--P~GkVPvL~~d~~~L~ES~aI~~YL  133 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS--PEGKVPVVKLDEKWVADSDVITQAL  133 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence            5999999999999999999988776532 234455664  4679999999998887777666543

>PRK14282 chaperone protein DnaJ; Provisional

Probab=91.72  E-value=0.19  Score=46.55  Aligned_cols=39  Identities=26%  Similarity=0.664  Sum_probs=31.3

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.+               +|+.|+|+-+..          .-+|+.|+..|.+.
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~  222 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----------GEYCHECGGSGRIR  222 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----------CCCCCCCCCceeEE
Confidence            4689999999865               699999998862          24699999888653

>PRK14284 chaperone protein DnaJ; Provisional

Probab=91.68  E-value=0.17  Score=47.35  Aligned_cols=39  Identities=23%  Similarity=0.644  Sum_probs=31.7

Q ss_pred             CCccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        198 ACTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       198 ~~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ....|..|+|.+.           .+|+.|+|.-++.          .-.|+.|+-.|.+
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  223 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI----------TDPCSVCRGQGRI  223 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc----------CCcCCCCCCccee
Confidence            3568999999987           5899999997762          2469999988865

>PRK14279 chaperone protein DnaJ; Provisional

Probab=91.62  E-value=0.17  Score=47.30  Aligned_cols=39  Identities=26%  Similarity=0.802  Sum_probs=31.8

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.|.+           +|+.|+|.-++.          .-+|+.|+-.|.++
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~g~v~  239 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----------EDPCEECKGTGVTT  239 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----------CCcCCCCCCCeEEE
Confidence            4789999999875           799999998873          24699999888763

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=91.61  E-value=0.46  Score=35.19  Aligned_cols=55  Identities=16%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..++.|.++|      |++|++....|++.      .+.+..+|++.+.  ..++.+.+  +...+|.+++
T Consensus        20 ~~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~--~i~~~Pt~~~   80 (109)
T cd03002          20 TTLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKY--GVQGFPTLKV   80 (109)
T ss_pred             eEEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHc--CCCcCCEEEE
Confidence            4788899997      99999987777653      2445556666522  23344445  4677898864

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=91.59  E-value=0.39  Score=39.81  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=38.7

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      .-|+.|.++|      |+.|+.+...|+.+     .+.|..+|++..     ++...+  +..++|.++  -+|+.+
T Consensus        85 ~VVV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f--~v~~vPTlllyk~G~~v  148 (175)
T cd02987          85 TVVVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEF--DTDALPALLVYKGGELI  148 (175)
T ss_pred             EEEEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhC--CCCCCCEEEEEECCEEE
Confidence            3466678887      99999988887664     355666666643     455556  567899874  466554

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG2813|consensus

Probab=91.57  E-value=0.17  Score=45.69  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=17.9

Q ss_pred             CccccccCCcceeeCCCCCCCc
Q psy15946        199 CTICQVCGGYRLLPCSLCNGSK  220 (251)
Q Consensus       199 ~~~C~~Cgg~~~~~C~~C~gs~  220 (251)
                      ...|.+|-|.|-+.|+.||||-
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G  208 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSG  208 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCC
Confidence            4578888888888888888875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=91.57  E-value=0.19  Score=46.76  Aligned_cols=38  Identities=34%  Similarity=0.809  Sum_probs=30.7

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|+-+..          ..+|+.|+-.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  212 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI----------KEKCPTCHGKGKV  212 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee----------cCCCCCCCCceEE
Confidence            4679999999764               799999998763          2569999988865

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=91.56  E-value=0.42  Score=38.04  Aligned_cols=56  Identities=14%  Similarity=0.139  Sum_probs=37.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |++|+.....|.+.      .+.|..+|++.+.  ..++.+.+  +...+|.+++
T Consensus        21 k~vvV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~--~V~~iPt~v~   82 (142)
T cd02950          21 KPTLVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRY--RVDGIPHFVF   82 (142)
T ss_pred             CEEEEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHc--CCCCCCEEEE
Confidence            45677888887      99999988887753      2456666666432  12344445  5677898864

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=91.52  E-value=0.17  Score=47.20  Aligned_cols=53  Identities=26%  Similarity=0.696  Sum_probs=28.5

Q ss_pred             CccccccCCcc------eeeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYR------LLPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+      ...|+.|+|+-.++...+  +.--.....|+.|+-.|.+   +|+.|
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C  218 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKC  218 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCC
Confidence            45677777765      356777777765432111  0000123567777766644   46555

>PRK14276 chaperone protein DnaJ; Provisional

Probab=91.42  E-value=0.19  Score=46.79  Aligned_cols=38  Identities=26%  Similarity=0.743  Sum_probs=30.8

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|+-+..          .-+|+.|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI----------KEPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc----------cCCCCCCCCceEE
Confidence            4689999998754               799999998873          2479999988875

>PRK15113 glutathione S-transferase; Provisional

Probab=91.40  E-value=0.76  Score=38.75  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=52.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+++|+...    .++++|.+++-+|...||+|+.+.++..  +....++.++.  ....||.+.++|..|-....+.+
T Consensus         5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~l~ES~aI~~   77 (214)
T PRK15113          5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFELSESSAIAE   77 (214)
T ss_pred             eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEEEecHHHHHH
Confidence            467888641    1489999999999999999998877542  22345666665  47899999999887766665554

>PLN02378 glutathione S-transferase DHAR1

Probab=91.39  E-value=0.78  Score=38.79  Aligned_cols=63  Identities=14%  Similarity=0.122  Sum_probs=47.8

Q ss_pred             CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..|++|.+++-+|+..|++|+.+.|+.... ..++.+..  ....+|.+..+|..|-....+.+..
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~in--P~G~VPvL~~~~~~l~ES~aI~~YL   80 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDIS--PQGKVPVLKIDDKWVTDSDVIVGIL   80 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhC--CCCCCCEEEECCEEecCHHHHHHHH
Confidence            369999999999999999998877765322 23566664  4789999998888887766666543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=91.34  E-value=0.2  Score=46.52  Aligned_cols=38  Identities=26%  Similarity=0.720  Sum_probs=30.8

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+           +|+.|+|.-+..          ..+|+.|+-.|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----------KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----------CCCCCCCCCceEE
Confidence            4679999999876           699999998763          2569999988875

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=91.31  E-value=0.46  Score=38.97  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             hHHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHhC----CCCCCCceEEECCe-eeCChHHHHHHH
Q psy15946        121 CLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLG----TDVINVPQIFVEGV-HIGDADAIERLN  181 (251)
Q Consensus       121 C~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~g----~~~~~vP~vfi~g~-~iGG~d~l~~l~  181 (251)
                      =..+..++.+.|++-.+.+- ..+++.++.+.+...    .+...+|.++|||+ .+-|.+.+..|.
T Consensus       123 ~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~  189 (193)
T PF01323_consen  123 PDVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE  189 (193)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence            34578889999986555442 344555555544321    34789999999999 677767665543

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=91.18  E-value=0.19  Score=36.85  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=36.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|+++...+...        .+.+..+|++.+  ...++.+.+  +...+|.+++
T Consensus        18 ~~~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~--~i~~~Pt~~~   81 (104)
T cd02997          18 KHVLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEY--NVKGFPTFKY   81 (104)
T ss_pred             CCEEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhC--CCccccEEEE
Confidence            35788999998      99999987555432        244555666652  123344455  4667898754

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=91.14  E-value=0.22  Score=46.32  Aligned_cols=38  Identities=32%  Similarity=0.748  Sum_probs=30.6

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|.-+..          .-+|+.|+-.|.+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  210 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI----------ESPCPVCSGTGKV  210 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc----------CCCCCCCCCccEE
Confidence            4679999999854               799999998762          2469999988865

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=91.14  E-value=1  Score=35.13  Aligned_cols=58  Identities=7%  Similarity=-0.029  Sum_probs=35.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHH-HHHH--------cCCccceeeccCCHHHHHHHHH----HhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQ-ILRT--------HLVKFDDKDVFMSRETQQEFKE----RLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~-~L~~--------~~v~~~e~dv~~d~~~~~el~~----~~g~g~~~vP~i~i   88 (251)
                      .+-++.|+++|      |++|++..+ .+..        .++.+..+|++..++..+.+.+    .+  +...+|.+++
T Consensus        16 KpVll~f~a~W------C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~--~~~G~Pt~vf   86 (124)
T cd02955          16 KPIFLSIGYST------CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMT--GQGGWPLNVF   86 (124)
T ss_pred             CeEEEEEccCC------CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhc--CCCCCCEEEE
Confidence            34455677887      999999865 2332        2344566788777765443333    23  3556888864

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=91.14  E-value=0.19  Score=47.50  Aligned_cols=53  Identities=30%  Similarity=0.694  Sum_probs=29.9

Q ss_pred             CccccccCCcce-----eeCCCCCCCceeeecccccc--cccceeCCCCCccccc-----ccCCC
Q psy15946        199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTT--ELVALKCMNCDEVGLV-----KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~--~~~~~~C~~Cnengl~-----~C~~C  251 (251)
                      ...|..|.|.|.     ..|+.|+|+-..+.......  -....+|+.|+-.|-+     +|+.|
T Consensus       150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C  214 (421)
T PTZ00037        150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNC  214 (421)
T ss_pred             cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcC
Confidence            456777777764     46888888764332111100  0124577777777754     47666

>PRK14281 chaperone protein DnaJ; Provisional

Probab=91.11  E-value=0.2  Score=46.91  Aligned_cols=53  Identities=28%  Similarity=0.620  Sum_probs=30.9

Q ss_pred             CccccccCCcce-----eeCCCCCCCceeeeccc--ccccccceeCCCCCccccc---ccCCC
Q psy15946        199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNH--FTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~--~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ...|..|.|.+.     ..|+.|+|+-.+....+  +.--.....|+.|+-.|.+   +|+.|
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  225 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC  225 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence            457777777765     45888888865532110  0000124578888777753   56666

>KOG0712|consensus

Probab=91.06  E-value=0.26  Score=45.06  Aligned_cols=53  Identities=26%  Similarity=0.627  Sum_probs=39.1

Q ss_pred             CccccccCCcce-----eeCCCCCCCceeeecccccc---cccceeCCCCCccccc-----ccCCC
Q psy15946        199 CTICQVCGGYRL-----LPCSLCNGSKKSVHRNHFTT---ELVALKCMNCDEVGLV-----KCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~~~~~---~~~~~~C~~Cnengl~-----~C~~C  251 (251)
                      ...|..|.|+++     .+|+.|.|+.-.....+..-   ....++|..||..|-+     +|+.|
T Consensus       127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C  192 (337)
T KOG0712|consen  127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTC  192 (337)
T ss_pred             CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCccc
Confidence            578888888876     35999999965542222111   2347999999999999     99998

>PRK14278 chaperone protein DnaJ; Provisional

Probab=91.03  E-value=0.22  Score=46.38  Aligned_cols=38  Identities=32%  Similarity=0.750  Sum_probs=30.8

Q ss_pred             CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.               .+|+.|+|.-++.          ..+|+.|+-.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----------PDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----------CCCCCCCCCceeE
Confidence            467999999875               4799999998873          2469999998875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=91.01  E-value=0.23  Score=46.13  Aligned_cols=39  Identities=31%  Similarity=0.754  Sum_probs=31.5

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.+           +|+.|+|.-++.          ..+|+.|+-.|.++
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~~  216 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI----------SNPCKTCGGQGLQE  216 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----------cccCCCCCCCcEEe
Confidence            4689999999865           799999998873          24699999888764

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=91.00  E-value=0.24  Score=38.29  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~   93 (251)
                      .-|+-|+++|      |+.|+.+-.+|++..      +.|..+|++..++..+++.      ....|..  |-+|+|+
T Consensus        16 lVVVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~------I~amPtfvffkngkh~   81 (114)
T cd02986          16 VLVLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD------ISYIPSTIFFFNGQHM   81 (114)
T ss_pred             EEEEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC------ceeCcEEEEEECCcEE
Confidence            3566688887      999999999988753      5577788988887443332      2335554  5667885

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=90.99  E-value=0.77  Score=35.30  Aligned_cols=63  Identities=13%  Similarity=0.221  Sum_probs=42.9

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH   92 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~   92 (251)
                      .....|+.|+.+|    ..||.|..+.-+|++..      +.|..+|++.+++    +...+  +..++|++.  -+|+.
T Consensus        26 ~~~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f--~V~sIPTli~fkdGk~   95 (111)
T cd02965          26 AGGDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARF--GVLRTPALLFFRDGRY   95 (111)
T ss_pred             CCCCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHc--CCCcCCEEEEEECCEE
Confidence            4456788888882    12999999998887642      3455777777764    55555  567799885  35554


Q ss_pred             c
Q psy15946         93 I   93 (251)
Q Consensus        93 ~   93 (251)
                      +
T Consensus        96 v   96 (111)
T cd02965          96 V   96 (111)
T ss_pred             E
Confidence            4

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK14301 chaperone protein DnaJ; Provisional

Probab=90.95  E-value=0.23  Score=46.17  Aligned_cols=38  Identities=32%  Similarity=0.910  Sum_probs=30.7

Q ss_pred             CccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.           .+|+.|+|+.+..          ..+|+.|+-.|.+
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  209 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI----------THPCPKCKGSGIV  209 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----------CCCCCCCCCCcee
Confidence            467999999986           4799999998873          2469999988865

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=90.91  E-value=0.63  Score=38.78  Aligned_cols=62  Identities=16%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCC-C--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFM-S--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~-~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++.+.+++-+|+..|++|+.+.++. .  .....++.+..  ....+|.+.++|..+-....+...
T Consensus         7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~y   71 (210)
T TIGR01262         7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVLTQSLAIIEY   71 (210)
T ss_pred             CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEeecHHHHHHH
Confidence            47899999999999999999987764 1  11234566654  478999999999888776666553

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=90.91  E-value=1.2  Score=33.14  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=38.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+.|..+|      |+.|..+...|++.     .+.|..+|++.+.+. .++.+..+  ...+|.+  |-+|+.+
T Consensus        19 vv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~--V~~~Pt~~~~~~G~~v   84 (103)
T cd02985          19 VLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREK--IIEVPHFLFYKDGEKI   84 (103)
T ss_pred             EEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcC--CCcCCEEEEEeCCeEE
Confidence            45566676      99999888777653     566777787666432 34555555  6788974  4477643

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=90.89  E-value=0.58  Score=35.91  Aligned_cols=56  Identities=14%  Similarity=0.197  Sum_probs=38.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|.++|      |++|+.+...+++..      +.+-.+|++.+.+..   .+.+  +..++|++.+
T Consensus        29 ~~~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~--~I~~~PTl~l   90 (113)
T cd03006          29 AEVSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQK--HFFYFPVIHL   90 (113)
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhc--CCcccCEEEE
Confidence            455788999998      999999988887642      456677777666532   1233  3456888754

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PLN02473 glutathione S-transferase

Probab=90.79  E-value=0.46  Score=39.88  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .+.+|+.+.      ++++.+++-+|+.++++|+.+.++...  ....++.++.  ...++|.+..+|..+
T Consensus         2 ~~kLy~~~~------s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l   64 (214)
T PLN02473          2 VVKVYGQIK------AANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKL   64 (214)
T ss_pred             ceEEecCCC------CCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEE
Confidence            357898884      899999999999999999988665432  2344555553  456799998776543

>KOG0907|consensus

Probab=90.71  E-value=0.46  Score=36.15  Aligned_cols=50  Identities=20%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF   87 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~   87 (251)
                      |+-|+++|      |+.|+.+.=+++++-     +.|-.+|++.    -.++....  +...+|.+.
T Consensus        25 VvdF~a~w------CgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~--~V~~~PTf~   79 (106)
T KOG0907|consen   25 VVDFYATW------CGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEF--NVKAMPTFV   79 (106)
T ss_pred             EEEEECCC------CcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhc--CceEeeEEE
Confidence            55588887      999999999998864     4455677776    23344444  467789884

>PRK14277 chaperone protein DnaJ; Provisional

Probab=90.65  E-value=0.27  Score=45.84  Aligned_cols=38  Identities=29%  Similarity=0.721  Sum_probs=31.0

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+               +|+.|+|+.+..          .-+|+.|+-.|.+
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII----------TDPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec----------cCCCCCCCCCcEE
Confidence            4689999999764               799999998873          2469999998875

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=90.58  E-value=0.53  Score=34.88  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=35.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------C--CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|++....|++.       +  +.+..+|++..++    +.+.+  +..++|.+++
T Consensus        16 ~~vlv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~I~~~Pt~~l   78 (104)
T cd03000          16 DIWLVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEF--GVRGYPTIKL   78 (104)
T ss_pred             CeEEEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhc--CCccccEEEE
Confidence            34678888897      99999877666542       2  3344556655443    44445  4677899864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=90.57  E-value=0.26  Score=45.92  Aligned_cols=39  Identities=33%  Similarity=0.807  Sum_probs=31.1

Q ss_pred             CCccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        198 ACTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       198 ~~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ....|..|+|.|.+               +|+.|+|..+..          ..+|+.|+-.|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII----------KKKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc----------CcCCCCCCCCcEE
Confidence            35789999998775               799999997762          3579999988865

>PRK10767 chaperone protein DnaJ; Provisional

Probab=90.54  E-value=0.29  Score=45.38  Aligned_cols=38  Identities=29%  Similarity=0.683  Sum_probs=30.7

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+           +|+.|+|..+..          ..+|+.|+-.|.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII----------KDPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----------CCCCCCCCCCceE
Confidence            4589999999876           599999998862          2569999988865

>PTZ00051 thioredoxin; Provisional

Probab=90.42  E-value=0.71  Score=33.47  Aligned_cols=56  Identities=20%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      ++.|+.+|      |+.|..+...|+..     ++.|..+|++...    .+.+..+  ...+|.+  |-+|+.+
T Consensus        22 li~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~   84 (98)
T PTZ00051         22 IVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKEN--ITSMPTFKVFKNGSVV   84 (98)
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHCC--CceeeEEEEEeCCeEE
Confidence            45666675      99999988877663     5667777776543    3444454  6778875  4466543

>TIGR01068 thioredoxin thioredoxin

Probab=90.39  E-value=1.2  Score=32.01  Aligned_cols=55  Identities=20%  Similarity=0.379  Sum_probs=35.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|.+++      |+.|..+...|++    +  .+.+..+|.+.+.+    +.+..+  ...+|.+++  +|+.
T Consensus        18 vi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~P~~~~~~~g~~   80 (101)
T TIGR01068        18 LVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYG--IRSIPTLLLFKNGKE   80 (101)
T ss_pred             EEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC--CCcCCEEEEEeCCcE
Confidence            34455554      9999988766644    2  36677888876654    344454  678998655  6653

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK14297 chaperone protein DnaJ; Provisional

Probab=90.38  E-value=0.28  Score=45.62  Aligned_cols=38  Identities=34%  Similarity=0.770  Sum_probs=30.8

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|..+..          ..+|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI----------EDPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc----------CCCCCCCCCCeEE
Confidence            4679999999865               799999998863          2479999988865

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=90.37  E-value=0.42  Score=42.26  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             CCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         39 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        39 ~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .||+|++++-+|+.++++|+.+.|+.... -+++.++.  -...+|++..+|..+
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~-~~~fl~iN--P~GkVPvL~~d~~~L  123 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNK-PEWFLKIS--PEGKVPVVKLDEKWV  123 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCcC-CHHHHhhC--CCCCCCEEEECCEEE
Confidence            59999999999999999999877654321 23455554  456799998877543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=90.37  E-value=0.11  Score=41.01  Aligned_cols=58  Identities=10%  Similarity=0.116  Sum_probs=34.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----c-CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~-~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      -.|.|++.+|      ||+|....=+|.+    . ++++..+..+.+++.++.+..   .|..++|.+++-+
T Consensus        43 ~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt---~g~~~IP~~I~~d  105 (129)
T PF14595_consen   43 YNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT---NGGRSIPTFIFLD  105 (129)
T ss_dssp             EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT----SS--SSEEEEE-
T ss_pred             cEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh---CCCeecCEEEEEc
Confidence            3899999998      9999987666655    3 566666655555555544443   3788999997653

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.33  E-value=0.79  Score=32.43  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=38.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      .++|..+.      .+.|..++-+|+..+++|+.+.++...+.. ++.........++|.+.++|.
T Consensus         2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~   60 (79)
T cd03077           2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGM   60 (79)
T ss_pred             CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCE
Confidence            46788774      678999999999999999988776432211 111100001347899977653

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>PLN02378 glutathione S-transferase DHAR1

Probab=90.28  E-value=0.45  Score=40.23  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=39.4

Q ss_pred             CCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         38 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        38 ~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ..||+|++++-+|+.++++|+.+.|+.... -.++.++.  ....+|++..+|..+
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~in--P~G~VPvL~~~~~~l   70 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDIS--PQGKVPVLKIDDKWV   70 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhC--CCCCCCEEEECCEEe
Confidence            369999999999999999998776654322 23566664  457899998876543

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=90.22  E-value=0.88  Score=32.33  Aligned_cols=56  Identities=18%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+.|.++.-+|+..|++|+.++......       ..  ....+|.+-+||+.|++...+..+.
T Consensus        16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~--P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MS--PSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cC--CCCcccEEEECCEEEeCHHHHHHHH
Confidence            46788999999999999999887533101       11  2357999999999999988776643

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.18  E-value=2  Score=30.37  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .++|....      .+.+..++-+|+..|++|+.+.++..+++. ++..........+|.+.+||..+.....+...
T Consensus         2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y   71 (79)
T cd03077           2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY   71 (79)
T ss_pred             CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            35666662      567889999999999999988776533221 11110001245899998898877665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.15  E-value=0.59  Score=37.74  Aligned_cols=52  Identities=15%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             HHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHh----CCCCCCCceEEECCeeeCC
Q psy15946        122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHIGD  173 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~----g~~~~~vP~vfi~g~~iGG  173 (251)
                      ..+.+++.+.|++.+.++- ..+.+..+.+.+..    ..+...+|.++|||+++-+
T Consensus       100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~  156 (178)
T cd03019         100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVN  156 (178)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEC
Confidence            5677888888886544322 12333333332221    1237889999999997544

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=90.12  E-value=0.29  Score=45.71  Aligned_cols=38  Identities=26%  Similarity=0.645  Sum_probs=30.9

Q ss_pred             CccccccCCcce-----------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRL-----------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~-----------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.           .+|+.|+|..++.          ..+|+.|+..|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA----------DDPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe----------ccCCCCCCCCceE
Confidence            468999999976           4899999998873          2479999988865

>PRK14294 chaperone protein DnaJ; Provisional

Probab=89.95  E-value=0.32  Score=45.02  Aligned_cols=38  Identities=34%  Similarity=0.763  Sum_probs=30.7

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+           +|+.|+|..+..          .-.|+.|+-.|.+
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  209 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI----------VSPCKTCHGQGRV  209 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec----------CcCCCCCCCceEe
Confidence            4579999999864           799999998863          2579999988865

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=89.74  E-value=0.34  Score=45.80  Aligned_cols=41  Identities=34%  Similarity=0.773  Sum_probs=31.9

Q ss_pred             CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.|.               .+|+.|+|+-+++.        ..-+|+.|+..|.++
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~v~  221 (421)
T PTZ00037        166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP--------ESKKCKNCSGKGVKK  221 (421)
T ss_pred             CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc--------ccccCCcCCCcceee
Confidence            467999999984               38999999988741        124799999888764

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=89.71  E-value=1.5  Score=35.58  Aligned_cols=38  Identities=8%  Similarity=0.115  Sum_probs=27.4

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccC
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFM   64 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~   64 (251)
                      .+...|+.|.++|      |++|++..-.|.+    .++.+..++++.
T Consensus        49 l~~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~   90 (153)
T TIGR02738        49 QDDYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG   90 (153)
T ss_pred             cCCCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            3566899999998      9999987766654    455555555554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=89.57  E-value=0.57  Score=39.46  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +++|..+       .+++.+++-+|+.++++|+.++|+...  ....+++++.  ....||++..
T Consensus         2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVD   57 (215)
T ss_pred             eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEe
Confidence            5788776       688999999999999999988776432  2235677664  4567999976

>PLN02473 glutathione S-transferase

Probab=89.55  E-value=1.3  Score=37.18  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|...      +.+.+.+++-+|..+|++|+.+.+...  +....++.+..  ....+|.+..+|..|.....+.+.
T Consensus         3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEEEehHHHHHH
Confidence            3577665      478999999999999999988766432  22334455553  467999999999888777766663

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=89.52  E-value=0.35  Score=40.34  Aligned_cols=58  Identities=19%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC-C-HH-HHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-S-RE-TQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~-d-~~-~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +|+...      ++++.+++-+|..++++|+.+.++. . .+ .-.++.++.  ...++|.+..+|..+
T Consensus         2 Ly~~~~------s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l   62 (210)
T TIGR01262         2 LYSYWR------SSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVL   62 (210)
T ss_pred             cccCCC------CCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEe
Confidence            676663      8999999999999999999887764 1 12 224566553  467899998876543

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=89.45  E-value=0.25  Score=41.46  Aligned_cols=24  Identities=29%  Similarity=0.783  Sum_probs=21.3

Q ss_pred             CccccccCCcceee-----CCCCCCCcee
Q psy15946        199 CTICQVCGGYRLLP-----CSLCNGSKKS  222 (251)
Q Consensus       199 ~~~C~~Cgg~~~~~-----C~~C~gs~k~  222 (251)
                      ...|+.|+|.|+++     |+.|+|+.++
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v  127 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF  127 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence            68999999999985     9999999766

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=89.42  E-value=0.67  Score=35.32  Aligned_cols=56  Identities=11%  Similarity=0.147  Sum_probs=35.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC---------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL---------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~---------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |+.|+.....+++..         +.+..+|.+.+  ...++.+.+  +...+|++++
T Consensus        20 ~~vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~--~i~~~Pt~~l   84 (114)
T cd02992          20 SAWLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCRDF--GVTGYPTLRY   84 (114)
T ss_pred             CeEEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHHhC--CCCCCCEEEE
Confidence            35788889998      999999888876632         23333343322  224455555  4677898854

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=89.31  E-value=0.29  Score=45.38  Aligned_cols=39  Identities=26%  Similarity=0.686  Sum_probs=31.3

Q ss_pred             CCccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        198 ACTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       198 ~~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ....|..|+|.|.+           +|+.|+|..+..          .-.|+.|+-.|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  204 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----------KTPCQACKGKTYI  204 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----------cccCccCCCcceE
Confidence            34679999999965           699999998873          2469999988865

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=89.09  E-value=0.44  Score=43.83  Aligned_cols=39  Identities=33%  Similarity=0.738  Sum_probs=30.9

Q ss_pred             CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.               .+|+.|+|+.+..          .-.|+.|+-.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII----------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec----------CCCCCCCCCCcEec
Confidence            567999999874               4799999998863          23699999888764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK09381 trxA thioredoxin; Provisional

Probab=88.95  E-value=1.2  Score=33.08  Aligned_cols=56  Identities=14%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i  171 (251)
                      ++.|.++|      |+.|..+...|++    +  ++.+..+|++.++..    ....+  ..++|.++  -+|+.+
T Consensus        25 vv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~--v~~~Pt~~~~~~G~~~   88 (109)
T PRK09381         25 LVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG--IRGIPTLLLFKNGEVA   88 (109)
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCC--CCcCCEEEEEeCCeEE
Confidence            45566665      9999988766643    2  355677788766543    33444  77899864  477755

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.82  E-value=0.49  Score=43.84  Aligned_cols=40  Identities=33%  Similarity=0.680  Sum_probs=31.2

Q ss_pred             CCccccccCCcce-------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        198 ACTICQVCGGYRL-------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       198 ~~~~C~~Cgg~~~-------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ....|..|+|+|.             ++|+.|+|+-++.          .-.|+.|+-.|.++
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i----------~~pC~~C~G~G~v~  210 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII----------KDPCGKCKGKGRVK  210 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC----------CCCCCCCCCCCeEe
Confidence            4678999999884             5799999998773          35899998877653

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=88.61  E-value=1.3  Score=31.91  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=35.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i  171 (251)
                      ++.|..+|      |+.|..+...|++.      .+.+..+|.+...    ++.+..+  ...+|.  +|.+|+.+
T Consensus        18 ~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          18 VLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFE--ITAVPTFVFFRNGTIV   81 (97)
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcC--CccccEEEEEECCEEE
Confidence            45566675      99999998877652      4555566665443    3445554  678897  45567643

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=88.55  E-value=0.35  Score=44.75  Aligned_cols=38  Identities=29%  Similarity=0.678  Sum_probs=30.7

Q ss_pred             CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.               .+|+.|+|..+..          ..+|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP----------EEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc----------cCCCCCCCCceeE
Confidence            468999999884               4899999998762          3579999988775

>PRK14287 chaperone protein DnaJ; Provisional

Probab=88.39  E-value=0.45  Score=44.15  Aligned_cols=38  Identities=37%  Similarity=0.799  Sum_probs=30.5

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|+.++.          ...|+.|+-.|.+
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  207 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII----------KQKCATCGGKGKV  207 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc----------cccCCCCCCeeEE
Confidence            4679999999853               799999998862          2469999988765

>PRK14281 chaperone protein DnaJ; Provisional

Probab=88.37  E-value=0.36  Score=45.23  Aligned_cols=38  Identities=26%  Similarity=0.678  Sum_probs=30.9

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+               +|+.|+|..+..          .-+|+.|+-.|.+
T Consensus       179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  231 (397)
T PRK14281        179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----------KDRCPACYGEGIK  231 (397)
T ss_pred             CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----------CCCCCCCCCCccE
Confidence            4679999999853               699999998873          2469999988876

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=88.18  E-value=0.85  Score=32.98  Aligned_cols=56  Identities=30%  Similarity=0.476  Sum_probs=37.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+.|+++|      |+.|..++..|.+    +  ++.|-.+|.+.+    ..+.+..+  ...+|.+  |-+|+.+
T Consensus        21 vv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~--v~~~Pt~~~~~~g~~~   84 (103)
T PF00085_consen   21 VVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN----KELCKKYG--VKSVPTIIFFKNGKEV   84 (103)
T ss_dssp             EEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS----HHHHHHTT--CSSSSEEEEEETTEEE
T ss_pred             EEEEeCCC------CCccccccceecccccccccccccchhhhhcc----chhhhccC--CCCCCEEEEEECCcEE
Confidence            45566664      9999988877633    3  466778888766    34555554  7789995  4566543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK11752 putative S-transferase; Provisional

Probab=88.06  E-value=1.3  Score=39.00  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      .+.+++|+.+       .++|.+++-+|+.+      +++|+.+.|+..  .....++.++.  -...||++..++
T Consensus        42 ~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN--P~GkVP~Lv~~d  108 (264)
T PRK11752         42 KHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN--PNSKIPALLDRS  108 (264)
T ss_pred             CCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC--CCCCCCEEEeCC
Confidence            4479999966       89999999999986      888887766542  22234666664  456799998653

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=88.01  E-value=0.93  Score=34.70  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHH---------hcCCceeEEEcCCCHH---------HHHHHHHHhCCCCCCCceE-
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILR---------THLVKFDDKDVFMSRE---------TQQEFKERLGTDVINVPQI-  164 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~---------~~~v~~~e~dv~~~~~---------~~~el~~~~g~~~~~vP~v-  164 (251)
                      ++.|.++|      |++|.++...+.         +.++.+..+|++.+..         ...++....+  ...+|.+ 
T Consensus        18 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~--v~~~Pt~~   89 (125)
T cd02951          18 LLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR--VRFTPTVI   89 (125)
T ss_pred             EEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC--CccccEEE
Confidence            45666675      999998775442         1234455666655421         1245666665  6789994 


Q ss_pred             EECC
Q psy15946        165 FVEG  168 (251)
Q Consensus       165 fi~g  168 (251)
                      |+++
T Consensus        90 ~~~~   93 (125)
T cd02951          90 FLDP   93 (125)
T ss_pred             EEcC
Confidence            5554

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=87.88  E-value=1.5  Score=37.94  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|++....+++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        53 ~~vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~--~I~~~PTl~~  112 (224)
T PTZ00443         53 GPWFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRF--AIKGYPTLLL  112 (224)
T ss_pred             CCEEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHc--CCCcCCEEEE
Confidence            45688899998      99999998887663      24455666665544    44455  4677898864

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=87.80  E-value=1.4  Score=35.69  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=38.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~iG  172 (251)
                      |+.|.++|      |+.|..+...|++.       ++.+..+|++.+++..+.+.-........+|.  +|.+|+.++
T Consensus        51 vV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          51 LVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence            56677776      99999887766322       37778889888875544432111001233787  467777553

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=87.74  E-value=1.6  Score=32.43  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~  169 (251)
                      ++.|.++|      |++|..+...|++.            .+.+-.+|.+.+.    ++.+..+  ..++|.++  -+|+
T Consensus        22 lv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Ptl~~~~~g~   89 (108)
T cd02996          22 LVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYR--INKYPTLKLFRNGM   89 (108)
T ss_pred             EEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCC--CCcCCEEEEEeCCc
Confidence            55677776      99999888777422            2566677777664    4555555  78899864  4554

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK10996 thioredoxin 2; Provisional

Probab=87.57  E-value=2.6  Score=33.25  Aligned_cols=56  Identities=20%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|...      ++.+..+|++.+++    +.+..+  ..++|.+  |-+|+.+
T Consensus        56 vv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--V~~~Ptlii~~~G~~v  119 (139)
T PRK10996         56 VIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFR--IRSIPTIMIFKNGQVV  119 (139)
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcC--CCccCEEEEEECCEEE
Confidence            55677776      99999877666442      34566677766654    444554  6788985  4477744

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=87.43  E-value=1.4  Score=31.73  Aligned_cols=56  Identities=11%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i  171 (251)
                      ++.|.++|      |+.|..+...|.+.      .+.+..+|++.+.    ++.+..+  ...+|.++  -+|+.+
T Consensus        16 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          16 VVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFG--VQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcC--CCCCCEEEEEeCCEEe
Confidence            45566675      99999887776542      2445667776654    3445554  67899954  466543

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=87.36  E-value=0.61  Score=43.31  Aligned_cols=38  Identities=32%  Similarity=0.770  Sum_probs=29.0

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|.|.+.+               +|+.|+|..+..          ..+|..|+-.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI----------EDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe----------ccCCCCCCCCccc
Confidence            4579999999864               699999998762          2469999887764

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=87.29  E-value=1.8  Score=31.63  Aligned_cols=51  Identities=14%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|.++|      |+.|..+...|++.       ++.+..+|.+.++.    +....+  ...+|.+++
T Consensus        20 lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~--i~~~Pt~~~   77 (101)
T cd02994          20 MIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFF--VTALPTIYH   77 (101)
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcC--CcccCEEEE
Confidence            66777776      99999887776433       45667777776654    344444  678899764

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=87.21  E-value=1.7  Score=32.21  Aligned_cols=60  Identities=22%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhc---------CCceeEEEcCCCHH----------------HHHHHHHHhCC
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRE----------------TQQEFKERLGT  156 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~---------~v~~~e~dv~~~~~----------------~~~el~~~~g~  156 (251)
                      ..|++|+..+      |++|.++.+.+...         ++.+..+++..+..                ...++....| 
T Consensus         7 ~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-   79 (112)
T PF13098_consen    7 PIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG-   79 (112)
T ss_dssp             EEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             EEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC-
Confidence            3456666664      99999886666531         23344445544331                2345666665 


Q ss_pred             CCCCCceEE-EC--Ce
Q psy15946        157 DVINVPQIF-VE--GV  169 (251)
Q Consensus       157 ~~~~vP~vf-i~--g~  169 (251)
                       ....|.++ ++  |+
T Consensus        80 -v~gtPt~~~~d~~G~   94 (112)
T PF13098_consen   80 -VNGTPTIVFLDKDGK   94 (112)
T ss_dssp             ---SSSEEEECTTTSC
T ss_pred             -CCccCEEEEEcCCCC
Confidence             77889965 44  55

...

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=87.17  E-value=0.62  Score=30.98  Aligned_cols=39  Identities=18%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             cceeeCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        208 YRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       208 ~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ..++.||.|++..+.-.+....-+.--+-||.|..--||
T Consensus         2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI   40 (55)
T PF14205_consen    2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI   40 (55)
T ss_pred             CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence            468999999999887665554444446899999865554

>PRK14283 chaperone protein DnaJ; Provisional

Probab=87.12  E-value=0.65  Score=43.23  Aligned_cols=38  Identities=37%  Similarity=0.841  Sum_probs=28.8

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+               +|+.|+|.-+..          ...|..|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  215 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV----------EKPCSNCHGKGVV  215 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec----------CCCCCCCCCceee
Confidence            4679999998764               599999987762          2468888887764

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.12  E-value=0.46  Score=28.89  Aligned_cols=31  Identities=13%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             eeCCCCCCCceeeecccccccccceeCCCCCc
Q psy15946        211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDE  242 (251)
Q Consensus       211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cne  242 (251)
                      +.|+.|+..-.+ -+.....++..++|+.|.+
T Consensus         3 i~Cp~C~~~y~i-~d~~ip~~g~~v~C~~C~~   33 (36)
T PF13717_consen    3 ITCPNCQAKYEI-DDEKIPPKGRKVRCSKCGH   33 (36)
T ss_pred             EECCCCCCEEeC-CHHHCCCCCcEEECCCCCC
Confidence            679999987665 2333456677899999986

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=87.09  E-value=1.7  Score=30.38  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=40.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCC-CCCCceeee-cccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDV-INVPQIFVE-GVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~-~~vP~i~i~-g~~~   93 (251)
                      ++.+|.-+      .  .+..++-+|+..+++|+.+.++.  .....+++.+..  .. ..+|.+..+ |..+
T Consensus         2 ~l~l~~~~------~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~--p~~g~vP~l~~~~~~~l   64 (76)
T PF02798_consen    2 TLTLYNGR------G--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAIN--PMFGKVPALEDGDGFVL   64 (76)
T ss_dssp             EEEEESSS------T--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHT--TTSSSSSEEEETTTEEE
T ss_pred             EEEEECCC------C--chHHHHHHHHHhcccCceEEEecccccccchhhhhcc--cccceeeEEEECCCCEE
Confidence            35566655      2  88999999999999998887664  333347777765  34 689999887 4443

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=87.06  E-value=2  Score=33.05  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=42.2

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG  172 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG  172 (251)
                      ...|+.|+.+|    ..|+.|..+.-+|++.-      +.+..+|++.++    ++....+  ..++|.+  |-+|+.++
T Consensus        28 ~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~--V~sIPTli~fkdGk~v~   97 (111)
T cd02965          28 GDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFG--VLRTPALLFFRDGRYVG   97 (111)
T ss_pred             CCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcC--CCcCCEEEEEECCEEEE
Confidence            34466677664    24999999888875543      335567777664    5666665  7889984  66888765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=86.98  E-value=4.9  Score=32.20  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC--CCCCCCceEEECCeeeCC---hH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVINVPQIFVEGVHIGD---AD  175 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g--~~~~~vP~vfi~g~~iGG---~d  175 (251)
                      .-++++|.+.      +|.-|..--+.|+.+|.++...+...    ...+++++|  ....+-=...|+|.+|-|   ++
T Consensus        25 ~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~   94 (149)
T COG3019          25 ATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAE   94 (149)
T ss_pred             eeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCHH
Confidence            4457788777      69999999999999999877776643    345666665  112334458999999987   46


Q ss_pred             HHHHHHHcCC
Q psy15946        176 AIERLNESGE  185 (251)
Q Consensus       176 ~l~~l~e~G~  185 (251)
                      .+.+|.++..
T Consensus        95 aI~~ll~~~p  104 (149)
T COG3019          95 AIARLLAEKP  104 (149)
T ss_pred             HHHHHHhCCC
Confidence            6777766654

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.96  E-value=0.98  Score=37.85  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH-HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~-~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      ++|..+.      .|+|.+++-.|..+|++|+.+.|+... ....++.++.  ....||++..++-
T Consensus         2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~   59 (211)
T COG0625           2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDG   59 (211)
T ss_pred             eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCC
Confidence            5677775      599999999999999999999887774 4456677664  4577999987753

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=86.85  E-value=0.93  Score=34.83  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EEC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVE  167 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~  167 (251)
                      ++.|+++|      |+.|..+...+.+      ....|..+|++.+.+...   +..+.....+|.+ |++
T Consensus        23 lV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~   84 (117)
T cd02959          23 MLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLD   84 (117)
T ss_pred             EEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEEC
Confidence            35567776      9999998887766      334577888876643221   2222111248985 453

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=86.71  E-value=0.76  Score=46.62  Aligned_cols=53  Identities=25%  Similarity=0.493  Sum_probs=37.6

Q ss_pred             eeeCChHHHHHHHHcCChhhhhccCCCC-----CCCccccccCCcce------------eeCCCCCCCcee
Q psy15946        169 VHIGDADAIERLNESGELRRILKPYKSP-----DACTICQVCGGYRL------------LPCSLCNGSKKS  222 (251)
Q Consensus       169 ~~iGG~d~l~~l~e~G~L~~~L~~~~~~-----~~~~~C~~Cgg~~~------------~~C~~C~gs~k~  222 (251)
                      .|.|-+|++++|+.+-- +....++...     -+.+.|++|+|.|+            +||+.|+|.+.-
T Consensus       696 TYtg~Fd~IR~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn  765 (935)
T COG0178         696 TYTGVFDDIRELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN  765 (935)
T ss_pred             chhcchHHHHHHHhcCh-HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence            47778999999986542 2233333322     24689999999996            789999998653

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=86.51  E-value=3.9  Score=30.17  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----cC---CceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----HL---VKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~---v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~  170 (251)
                      |+.|+++|      |+.|..+...|..    ++   +.+..+|++ +.    ++.+..+  ...+|.  +|-+|+.
T Consensus        21 vv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~--v~~~Pt~~~~~~g~~   83 (102)
T cd02948          21 VVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYR--GKCEPTFLFYKNGEL   83 (102)
T ss_pred             EEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcC--CCcCcEEEEEECCEE
Confidence            45677777      9999988776643    32   445566665 32    3444544  678886  4556763

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=86.34  E-value=2.3  Score=30.09  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh----c----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF  165 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf  165 (251)
                      -+++|++++      |+.|..+...|..    .    ++.+..+|.+.+    .++.+..+  ...+|.++
T Consensus        18 ~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~--i~~~Pt~~   76 (101)
T cd02961          18 VLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN----NDLCSEYG--VRGYPTIK   76 (101)
T ss_pred             EEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccch----HHHHHhCC--CCCCCEEE
Confidence            356667674      9999988777644    2    344555565543    34555555  67899864

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK14291 chaperone protein DnaJ; Provisional

Probab=86.27  E-value=0.78  Score=42.77  Aligned_cols=37  Identities=32%  Similarity=0.807  Sum_probs=29.3

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.+.+           +|+.|+|...+           ...|+.|+-.|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-----------~~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-----------REPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE-----------ccCCCCCCCCceE
Confidence            5679999999875           79999999843           2469999887765

>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function

Probab=86.23  E-value=0.4  Score=30.88  Aligned_cols=38  Identities=26%  Similarity=0.495  Sum_probs=24.1

Q ss_pred             CCcceeeCCCCCCCceeeecccc-cccccceeCCCCCcc
Q psy15946        206 GGYRLLPCSLCNGSKKSVHRNHF-TTELVALKCMNCDEV  243 (251)
Q Consensus       206 gg~~~~~C~~C~gs~k~~~~~~~-~~~~~~~~C~~Cnen  243 (251)
                      ||.-|+.|..|.--=........ +.....+||.+|.|-
T Consensus         2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v   40 (46)
T PF11331_consen    2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV   40 (46)
T ss_pred             CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence            68899999999764222211111 112457999999874

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=85.98  E-value=3.8  Score=32.09  Aligned_cols=54  Identities=17%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             HHHHHHHhcCCceeEEEcCCCHH-------HHHHHHHHhCCCCCCCceEEECCeee--CChHHHHH
Q psy15946        123 KVKQILRTHLVKFDDKDVFMSRE-------TQQEFKERLGTDVINVPQIFVEGVHI--GDADAIER  179 (251)
Q Consensus       123 ~~k~lL~~~~v~~~e~dv~~~~~-------~~~el~~~~g~~~~~vP~vfi~g~~i--GG~d~l~~  179 (251)
                      .+.+.|++.|+.+..+++.+++.       ..+.|. ..|  ...+|.++|||+.+  |.|-...+
T Consensus        31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G--~e~LPitlVdGeiv~~G~YPt~eE   93 (123)
T PF06953_consen   31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEG--AEALPITLVDGEIVKTGRYPTNEE   93 (123)
T ss_dssp             HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH---GGG-SEEEETTEEEEESS---HHH
T ss_pred             HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcC--cccCCEEEECCEEEEecCCCCHHH
Confidence            45567899999999999988753       233333 333  67899999999865  65544333

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>KOG1422|consensus

Probab=85.78  E-value=2.1  Score=36.59  Aligned_cols=67  Identities=13%  Similarity=0.021  Sum_probs=48.2

Q ss_pred             eEEEEeecCCCC---CCCCchHHHHHHHHHHcCCcc--ceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         25 KIVMYSTTMGIV---RDTYHRCLKVKQILRTHLVKF--DDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        25 ~vvvyt~~~~~~---~~~C~~C~~~k~~L~~~~v~~--~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      .+-++.+.+++.   -..||+|+++-..|..++++|  ..+|++..++.   ++.++  ....+|.+..++.++...
T Consensus         3 ~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~---f~~~s--p~~~~P~l~~d~~~~tDs   74 (221)
T KOG1422|consen    3 EIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW---FLDIS--PGGKPPVLKFDEKWVTDS   74 (221)
T ss_pred             ceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHH---HHhhC--CCCCCCeEEeCCceeccH
Confidence            345555544333   448999999999999999876  55677777764   55565  467799999999876553

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=85.64  E-value=1.1  Score=35.93  Aligned_cols=43  Identities=7%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHH
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEF   72 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el   72 (251)
                      .-|+-|+++|      |+.|+.+-.+|++..      +.+..+||+..++..+++
T Consensus        25 lVVvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y   73 (142)
T PLN00410         25 LVVIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY   73 (142)
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence            4677799998      999999988888743      445778999888754433

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=85.62  E-value=2.1  Score=31.19  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=38.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .+-+++|..+|      |+.|.+++..|++..      +.|..+|++..+.    +.+.+|-....+|.+.+-
T Consensus        13 ~~~~~~f~~~~------~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~~   75 (103)
T cd02982          13 KPLLVLFYNKD------DSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAII   75 (103)
T ss_pred             CCEEEEEEcCC------hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEEE
Confidence            45788888887      999999999988732      5566666665444    445553222378988753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02740 TraF-like TraF-like protein

Probab=85.48  E-value=1.9  Score=38.31  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCHH-------HHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSRE-------TQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~~-------~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...|+.|.++|      |++|++..-.|..    +++.+..++++.+..       .-..+.+.+  +...+|.+++
T Consensus       167 k~~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~--gV~~vPtl~L  235 (271)
T TIGR02740       167 KSGLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQL--KIRTVPAVFL  235 (271)
T ss_pred             CeEEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHc--CCCcCCeEEE
Confidence            45788888997      9999987766654    566666666655321       012344455  5678999975

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=85.41  E-value=0.83  Score=38.11  Aligned_cols=56  Identities=13%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             EEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946         28 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHI   93 (251)
Q Consensus        28 vyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~   93 (251)
                      +|....      ||+|.+|+.++--++|+++.+-+..|.+. . =.++.  |...||.+. -+|+..
T Consensus         3 LYIYdH------CPfcvrarmi~Gl~nipve~~vL~nDDe~-T-p~rmi--G~KqVPiL~Kedg~~m   59 (215)
T COG2999           3 LYIYDH------CPFCVRARMIFGLKNIPVELHVLLNDDEE-T-PIRMI--GQKQVPILQKEDGRAM   59 (215)
T ss_pred             eeEecc------ChHHHHHHHHhhccCCChhhheeccCccc-C-hhhhh--cccccceEEccccccc
Confidence            566675      99999999999999999999887766652 1 12233  677889886 444443

>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function

Probab=85.22  E-value=4.7  Score=31.43  Aligned_cols=50  Identities=22%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             cCCCcchH-----------HHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946        115 RDTYHRCL-----------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       115 r~tc~~C~-----------~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      .+||+.|.           .++..|..+|+.+....+.++.+   ++..    .....|.|.|||+.|
T Consensus        12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~----~~~~S~~I~inG~pi   72 (120)
T PF10865_consen   12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFAR----QPLESPTIRINGRPI   72 (120)
T ss_pred             CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhh----cccCCCeeeECCEeh
Confidence            56899987           56667888998754444433322   1111    125679999999844

>PLN02395 glutathione S-transferase

Probab=85.15  E-value=3.2  Score=34.61  Aligned_cols=70  Identities=20%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|...       .+.+.+++-+|...|++|+.+.++..  .....++.+..  ....+|.+..+|..+-....+.+..
T Consensus         3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~YL   73 (215)
T PLN02395          3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYKIFESRAIMRYY   73 (215)
T ss_pred             EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5677633       34578999999999999998877543  12335666665  4789999998888787777666643


Q ss_pred             H
Q psy15946        182 E  182 (251)
Q Consensus       182 e  182 (251)
                      +
T Consensus        74 ~   74 (215)
T PLN02395         74 A   74 (215)
T ss_pred             H
Confidence            3

>PRK14292 chaperone protein DnaJ; Provisional

Probab=85.11  E-value=0.75  Score=42.65  Aligned_cols=38  Identities=26%  Similarity=0.686  Sum_probs=29.8

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV  246 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~  246 (251)
                      ...|..|+|.|.+               +|+.|+|..+..          ...|+.|+..|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec----------CCCCCCCCCceEE
Confidence            5679999998754               599999997762          3579999987764

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=84.89  E-value=3.6  Score=31.78  Aligned_cols=37  Identities=14%  Similarity=-0.006  Sum_probs=23.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHH-------c--CCccceeeccCCHH
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRT-------H--LVKFDDKDVFMSRE   67 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~--~v~~~e~dv~~d~~   67 (251)
                      -++.|.++|      |+.|++....|.+       .  ++.+..++++.+++
T Consensus        20 vll~F~atw------C~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~   65 (132)
T cd02964          20 VGLYFSASW------CPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE   65 (132)
T ss_pred             EEEEEECCC------CchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHH
Confidence            566777887      9999986655543       1  34455555555543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=84.81  E-value=0.2  Score=42.52  Aligned_cols=76  Identities=17%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             CceEEECCeeeCChHHHHHHHHcCChhhhhccCCCCCC--CccccccCCcceeeCCCCCCCceeeecccccccccceeCC
Q psy15946        161 VPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA--CTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCM  238 (251)
Q Consensus       161 vP~vfi~g~~iGG~d~l~~l~e~G~L~~~L~~~~~~~~--~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~  238 (251)
                      .|.-+++.-++=...+|.++. +|.|.+.|+.+-....  -..|..|.+.|| .|..|+.+.-+ .....   ....+|+
T Consensus       103 ~~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~I-fPF~~---~~~~~C~  176 (202)
T PF13901_consen  103 PRDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDII-FPFQI---DTTVRCP  176 (202)
T ss_pred             chhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCC-CCCCC---CCeeeCC
Confidence            344455555666778888884 7888888877543322  349999999998 79999998444 22221   2568999


Q ss_pred             CCCc
Q psy15946        239 NCDE  242 (251)
Q Consensus       239 ~Cne  242 (251)
                      .|+-
T Consensus       177 ~C~~  180 (202)
T PF13901_consen  177 KCKS  180 (202)
T ss_pred             cCcc
Confidence            8874

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=84.77  E-value=0.78  Score=30.88  Aligned_cols=32  Identities=28%  Similarity=0.664  Sum_probs=21.0

Q ss_pred             eeeCCCCCCCceeeeccccccc-c--cceeCCCCCc
Q psy15946        210 LLPCSLCNGSKKSVHRNHFTTE-L--VALKCMNCDE  242 (251)
Q Consensus       210 ~~~C~~C~gs~k~~~~~~~~~~-~--~~~~C~~Cne  242 (251)
                      +.|||.| |+..+......... .  .++.|..|.-
T Consensus         3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence            5799999 88766544322211 1  5788999975

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=84.76  E-value=5.9  Score=28.14  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCH-------HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSR-------ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~-------~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      -+.|.+++-+|...|++|+.+.++...       ++.....+. +.....+|.+..+|..+.....+...
T Consensus         9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~-~~P~g~vP~L~~~g~~l~ES~AIl~Y   77 (82)
T cd03075           9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKL-GLDFPNLPYYIDGDVKLTQSNAILRY   77 (82)
T ss_pred             ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhc-CCcCCCCCEEEECCEEEeehHHHHHH
Confidence            357789999999999999988776432       111111111 11456999999988877665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=84.72  E-value=2.3  Score=41.86  Aligned_cols=57  Identities=11%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHH-------HH-cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQIL-------RT-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L-------~~-~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +-++-|+++|      |++|+..+...       +. .++.+..+|++.+.+...++.+.+  +...+|.+++
T Consensus       476 ~VlVdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~--~v~g~Pt~~~  540 (571)
T PRK00293        476 PVMLDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY--NVLGLPTILF  540 (571)
T ss_pred             cEEEEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc--CCCCCCEEEE
Confidence            4566788887      99999876542       11 246667788887654445666666  5677899864

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=84.71  E-value=0.63  Score=35.79  Aligned_cols=24  Identities=33%  Similarity=0.743  Sum_probs=20.1

Q ss_pred             CccccccCCcceeeCCCCCCCcee
Q psy15946        199 CTICQVCGGYRLLPCSLCNGSKKS  222 (251)
Q Consensus       199 ~~~C~~Cgg~~~~~C~~C~gs~k~  222 (251)
                      ...|..|+|.|.++|..|+|+..+
T Consensus        75 ~~~C~~C~G~Gk~~C~~C~G~G~~   98 (111)
T PLN03165         75 VSKCINCDGAGSLTCTTCQGSGIQ   98 (111)
T ss_pred             EEECCCCCCcceeeCCCCCCCEEE
Confidence            568889999998889999998665

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=84.67  E-value=0.91  Score=32.98  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=34.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC--------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL--------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~--------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|+.....|++..        +.+..+|.+.+     ++....  +...+|.+++
T Consensus        19 ~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~--~~~~~Pt~~~   79 (104)
T cd02995          19 KDVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEF--VVDGFPTILF   79 (104)
T ss_pred             CcEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhc--cCCCCCEEEE
Confidence            45678899998      999999888776632        34455555543     223333  3467898864

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=84.59  E-value=1.7  Score=31.29  Aligned_cols=51  Identities=16%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc--------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF  165 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~--------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf  165 (251)
                      -++.|++++      |+.|..+...|+..        ++.+..+|...+.    ++.+..+  ...+|.++
T Consensus        16 ~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~--i~~~P~~~   74 (102)
T TIGR01126        16 VLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFG--VSGFPTIK   74 (102)
T ss_pred             EEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCC--CCcCCEEE
Confidence            367777785      99999766655332        2556666665553    4445554  67899874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=84.54  E-value=3.6  Score=31.56  Aligned_cols=22  Identities=14%  Similarity=0.138  Sum_probs=16.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHH
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILR   51 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~   51 (251)
                      .-++.|.++|      |+.|++....|.
T Consensus        20 ~vll~Fwa~w------C~~C~~~~p~l~   41 (131)
T cd03009          20 TVGLYFSASW------CPPCRAFTPKLV   41 (131)
T ss_pred             EEEEEEECCC------ChHHHHHhHHHH
Confidence            3567777887      999998666654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=84.36  E-value=3.2  Score=30.60  Aligned_cols=64  Identities=20%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             EEEeecCCCCCCCCchH------HHHHHHHHH--------cCCccceeeccCCHH--HHHHHHHHhCCCCCCCCceeeec
Q psy15946         27 VMYSTTMGIVRDTYHRC------LKVKQILRT--------HLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C------~~~k~~L~~--------~~v~~~e~dv~~d~~--~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      +||++.-     .|+.|      +..-+||+.        +.+.|+++||...++  ..+++.+..-....-.|.+.++|
T Consensus         1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~   75 (93)
T PF07315_consen    1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVIND   75 (93)
T ss_dssp             EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred             Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECC
Confidence            4677765     67777      445566654        346788999977664  33444433322445579999999


Q ss_pred             ccccc
Q psy15946         91 VHIGT   95 (251)
Q Consensus        91 ~~~gG   95 (251)
                      +.++.
T Consensus        76 eiV~E   80 (93)
T PF07315_consen   76 EIVAE   80 (93)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88754

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>PLN02395 glutathione S-transferase

Probab=84.23  E-value=2  Score=35.91  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=42.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      .++||+.+.       +.+.+++-+|+.+|++|+.+.++...  ....+++++.  -...+|.+..+|..
T Consensus         2 ~~~ly~~~~-------~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~   62 (215)
T PLN02395          2 VLKVYGPAF-------ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYK   62 (215)
T ss_pred             eEEEEcCCc-------CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEE
Confidence            368998663       35799999999999999988776532  2234677664  45679999876643

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=84.04  E-value=2.5  Score=30.94  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEG  168 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g  168 (251)
                      ++.|.++|      |+.|..+...+++.      .+.+..+|.+.+++    +.+..+  ...+|.+  |-+|
T Consensus        23 ~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--i~~~Pt~~~~~~g   83 (104)
T cd03004          23 LVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQAN--IRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcC--CCcccEEEEEcCC
Confidence            45667776      99999876666432      25567777776543    444444  7788985  4455

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=83.89  E-value=3  Score=33.53  Aligned_cols=47  Identities=11%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc--------------CCccceeeccCCHHHHHHHHHHh
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------------LVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------------~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .-++-|.++|      ||+|++..-.|.+.              ++.+-.++++.+.+...++.+..
T Consensus        27 ~vlL~FwAsW------CppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~   87 (146)
T cd03008          27 VLLLFFGAVV------SPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM   87 (146)
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence            4567778887      99999988777551              34445555555544444444443

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=83.69  E-value=2.7  Score=30.48  Aligned_cols=50  Identities=18%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF  165 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf  165 (251)
                      ++.|.++|      |+.|..+...|.+.      .+.+..+|.+.+.+    +.+..+  ...+|.++
T Consensus        22 lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~--i~~~P~~~   77 (103)
T cd03001          22 LVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYG--VRGFPTIK   77 (103)
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCC--CCccCEEE
Confidence            44555564      99999887766442      34566777765543    444554  67899863

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=83.42  E-value=5.5  Score=30.29  Aligned_cols=60  Identities=12%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...++||--|.     +||-...|.+-|++.      .+++..+||..+.+.-.++.+.+| -....||+++
T Consensus        19 ~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~-V~HeSPQ~il   84 (105)
T PF11009_consen   19 EKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG-VKHESPQVIL   84 (105)
T ss_dssp             -SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEE
T ss_pred             cCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC-CCcCCCcEEE
Confidence            55788888886     799999998888762      288999999999999999999996 3455799975

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=83.40  E-value=0.8  Score=38.44  Aligned_cols=31  Identities=23%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             ceeeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        209 RLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       209 ~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      +-..|+.|+|+.++...        ..+|+.|+-.|.++
T Consensus        98 ~~~~C~~C~G~G~~i~~--------~~~C~~C~G~G~v~  128 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRR--------QRECDTCAGTGRFR  128 (186)
T ss_pred             cCCcCCCCCCeeEEecC--------CCCCCCCCCccEEe
Confidence            48899999999888421        15899999988764

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK10357 putative glutathione S-transferase; Provisional

Probab=83.16  E-value=1.7  Score=36.03  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=40.5

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGV   91 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~   91 (251)
                      .+|+...      ++++++++-+|+.++++|+.++++.... ..++.+..  ....+|++.. +|.
T Consensus         2 ~Ly~~~~------s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n--P~g~vP~L~~~~g~   58 (202)
T PRK10357          2 KLIGSYT------SPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN--PLGKVPALVTEEGE   58 (202)
T ss_pred             eeecCCC------CchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC--CccCCCeEEeCCCC
Confidence            5788874      9999999999999999999887764321 12334443  4567999985 443

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=83.00  E-value=3.2  Score=31.23  Aligned_cols=56  Identities=16%  Similarity=0.360  Sum_probs=35.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH----Hh---cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL----RT---HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL----~~---~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      ++.|.++|      |+.|..+..+|    +.   .++.+..+|++.++.    +....+  ..++|.+  |.+|+.+
T Consensus        28 lV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~--V~~~Pt~~i~~~g~~~   92 (111)
T cd02963          28 LIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLG--AHSVPAIVGIINGQVT   92 (111)
T ss_pred             EEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcC--CccCCEEEEEECCEEE
Confidence            45667776      99998666544    22   356677777766543    444454  7889985  4677644

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=82.94  E-value=2.3  Score=29.79  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=38.8

Q ss_pred             CCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         34 GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        34 ~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      -|..+..|+|.++..+|+-.+++|+.+ .+.++.       .+  ....+|.+..+|+.+.+++
T Consensus        10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~-~~~n~~-------~s--p~gkLP~l~~~~~~i~d~~   63 (73)
T cd03078          10 WGLPSVDPECLAVLAYLKFAGAPLKVV-PSNNPW-------RS--PTGKLPALLTSGTKISGPE   63 (73)
T ss_pred             CCCCcCCHHHHHHHHHHHcCCCCEEEE-ecCCCC-------CC--CCCccCEEEECCEEecChH
Confidence            366778899999999999999999554 333322       11  2345899998887777653

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=82.91  E-value=3.9  Score=32.78  Aligned_cols=41  Identities=7%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEF  150 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el  150 (251)
                      |+-|+.+|      |+.|..+-.+|++.-      +.+..+||+..+++.+++
T Consensus        27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y   73 (142)
T PLN00410         27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY   73 (142)
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence            45577787      999999888876654      345778998776554433

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=82.87  E-value=3  Score=34.48  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=37.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~iG  172 (251)
                      |+-|+.+|      |+.|..+...|+.+     .++|..+|++..     ++....+  ...+|.  +|-+|+.++
T Consensus        87 VV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~--v~~vPTlllyk~G~~v~  149 (175)
T cd02987          87 VVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD--TDALPALLVYKGGELIG  149 (175)
T ss_pred             EEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC--CCCCCEEEEEECCEEEE
Confidence            34456665      99999777766443     356667777532     5666665  778997  466888664

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=82.83  E-value=2.4  Score=30.72  Aligned_cols=51  Identities=14%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c----CCceeEEEcCC-CHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H----LVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~----~v~~~e~dv~~-~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|+++|      |+.|..+...+..    +    ++.+..+|.+. +++    +.+..+  ...+|.+++
T Consensus        22 ~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~--i~~~P~~~~   81 (105)
T cd02998          22 LVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYG--VSGFPTLKF   81 (105)
T ss_pred             EEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCC--CCCcCEEEE
Confidence            56677775      9999977666633    2    35566667666 443    333444  678998654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PTZ00057 glutathione s-transferase; Provisional

Probab=82.80  E-value=9.1  Score=31.90  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=47.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh---CCCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL---GTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~---g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ++++|....      -+.+..++-+|+..|++|+.+.+....+.-.+..+..   ......+|.+.+||..+.....+..
T Consensus         4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~   77 (205)
T PTZ00057          4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR   77 (205)
T ss_pred             ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            367777653      6677899999999999999987753221100111111   1357789999999987776666555

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=82.80  E-value=5.2  Score=33.54  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=46.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE-----CCe--eeCCh
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV-----EGV--HIGDA  174 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi-----~g~--~iGG~  174 (251)
                      +.+|...       .+.+.+++-+|+.+|++|+.++++...  ....++.++.  +...+|.+..     +|+  .+-..
T Consensus         2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~~~~~d~g~~~~L~ES   72 (215)
T PRK13972          2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVDHSPADGGEPLSLFES   72 (215)
T ss_pred             eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEeCCCCCCCCceeEEcH
Confidence            3567654       578999999999999999988776432  2345677665  4779999987     342  35555


Q ss_pred             HHHHH
Q psy15946        175 DAIER  179 (251)
Q Consensus       175 d~l~~  179 (251)
                      ..+.+
T Consensus        73 ~AI~~   77 (215)
T PRK13972         73 GAILL   77 (215)
T ss_pred             HHHHH
Confidence            54444

>KOG0910|consensus

Probab=82.42  E-value=0.67  Score=37.50  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=39.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i  171 (251)
                      +|-|+..|      |.-|+.+.-+|+++-      +++..+|++.+.+    |.+..+  ...+|.  +|-||+-+
T Consensus        65 lVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~--I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   65 LVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYE--ISAVPTVLVFKNGEKV  128 (150)
T ss_pred             EEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcc--eeeeeEEEEEECCEEe
Confidence            35688888      999999888887653      3456677777655    444444  678888  47788744

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=82.38  E-value=2.6  Score=31.02  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      -++.|.++|      |+.|..+...|++.      .+.+..+|++.+  ...++....+  ...+|.+++
T Consensus        21 ~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~~~~--i~~~Pt~~~   80 (109)
T cd03002          21 TLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCGKYG--VQGFPTLKV   80 (109)
T ss_pred             EEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHHHcC--CCcCCEEEE
Confidence            356677776      99999876666443      234455566542  1234555554  778998654

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=82.36  E-value=3  Score=30.15  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=33.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc---------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~---------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~  169 (251)
                      ++.|.++|      |+.|......|++.         .+.+..+|.+.+..    +.+..+  ...+|.++  -+|+
T Consensus        20 lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~   84 (102)
T cd03005          20 FVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQ--VRGYPTLLLFKDGE   84 (102)
T ss_pred             EEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcC--CCcCCEEEEEeCCC
Confidence            56677776      99999776655332         35566667665543    333444  67899853  4554

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.34  E-value=4  Score=34.09  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCe-eeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGV-HIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~-~iGG~d~l~~l  180 (251)
                      .+|....      .++|.+++-+|..+|++|+.+.|+... ....++.++.  +...||.+..++- .+-....+.+.
T Consensus         2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~~~l~ES~AI~~Y   71 (211)
T COG0625           2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDGEVLTESGAILEY   71 (211)
T ss_pred             eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCCCeeecHHHHHHH
Confidence            3555553      499999999999999999999887664 4456677775  4789999988875 45554544443

>PRK14873 primosome assembly protein PriA; Provisional

Probab=82.23  E-value=2.2  Score=42.76  Aligned_cols=46  Identities=20%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             CCccccccCCcceeeCCCCCCCceeeecccccccccceeCCCCCccc-ccccCCC
Q psy15946        198 ACTICQVCGGYRLLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVG-LVKCYAC  251 (251)
Q Consensus       198 ~~~~C~~Cgg~~~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cneng-l~~C~~C  251 (251)
                      +.-.|..||-.  +.|+.|+++-.. |.+     ...++|..|+-.- -.+||.|
T Consensus       382 p~l~C~~Cg~~--~~C~~C~~~L~~-h~~-----~~~l~Ch~CG~~~~p~~Cp~C  428 (665)
T PRK14873        382 PSLACARCRTP--ARCRHCTGPLGL-PSA-----GGTPRCRWCGRAAPDWRCPRC  428 (665)
T ss_pred             CeeEhhhCcCe--eECCCCCCceeE-ecC-----CCeeECCCCcCCCcCccCCCC
Confidence            45699999865  899999999664 322     2469999997643 4579988

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=81.89  E-value=3.2  Score=29.32  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHH
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILR   51 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~   51 (251)
                      ..+-++.|+++|      |++|+..++.+-
T Consensus        17 ~kpvlv~f~a~w------C~~C~~l~~~~~   40 (82)
T PF13899_consen   17 GKPVLVDFGADW------CPPCKKLEREVF   40 (82)
T ss_dssp             TSEEEEEEETTT------THHHHHHHHHTT
T ss_pred             CCCEEEEEECCC------CHhHHHHHHHHc
Confidence            455677788887      999999887763

...

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=81.66  E-value=6.9  Score=34.26  Aligned_cols=34  Identities=12%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKD   61 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~d   61 (251)
                      ....|++||=+      .||||+++-+-+..    -.|.+..+.
T Consensus       117 ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip  154 (251)
T PRK11657        117 APRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHIL  154 (251)
T ss_pred             CCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEe
Confidence            34578999999      59999998666543    235555554

>KOG1422|consensus

Probab=81.65  E-value=4.4  Score=34.62  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             CCcchHHHHHHHHhcCCcee--EEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHHc
Q psy15946        117 TYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNES  183 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~--e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e~  183 (251)
                      -|++|+++...|...+++|.  .+|++..+   ++++.++.  ...+|.|-.|+..+-+.+.+.+..|+
T Consensus        20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp--~~~~P~l~~d~~~~tDs~~Ie~~Lee   83 (221)
T KOG1422|consen   20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISP--GGKPPVLKFDEKWVTDSDKIEEFLEE   83 (221)
T ss_pred             CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCC--CCCCCeEEeCCceeccHHHHHHHHHH
Confidence            49999999999999999865  45665554   35677775  67899999999999998888876544

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=81.52  E-value=3.5  Score=35.35  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCC--ccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v--~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .|.||+-.      ||..|...-+.|+++|.  .++.+|.+.-+.  ..++    ++..++|.+|+||+.+
T Consensus        12 ~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~----~~V~SvP~Vf~DGel~   70 (265)
T COG5494          12 EVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFE----KGVISVPSVFIDGELV   70 (265)
T ss_pred             EEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhh----cceeecceEEEcCeEE
Confidence            68899988      69999999999999886  355555554443  2222    2678899999999874

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=81.45  E-value=2.6  Score=35.45  Aligned_cols=53  Identities=19%  Similarity=0.093  Sum_probs=35.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eeccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVH   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~   92 (251)
                      -||.|+++|      |+.|+.+...|+.+.     +.|..+|++..       ...+  +..++|.++  -+|+.
T Consensus       105 VVV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~--~i~~lPTlliyk~G~~  164 (192)
T cd02988         105 VVVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNY--PDKNLPTILVYRNGDI  164 (192)
T ss_pred             EEEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhC--CCCCCCEEEEEECCEE
Confidence            456688887      999999999888753     55666666421       2344  567789885  45543

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=81.39  E-value=2.5  Score=30.92  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=34.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~  169 (251)
                      ++.|.++|      |+.|..+...|++..      +.+..+|++.+++    +.+..+  ...+|.+  |-+|+
T Consensus        22 ~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~   83 (101)
T cd03003          22 FVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQG--VNSYPSLYVFPSGM   83 (101)
T ss_pred             EEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcC--CCccCEEEEEcCCC
Confidence            45667776      999998877764432      4456777776543    444444  6788986  44554

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=81.26  E-value=3.4  Score=28.97  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=22.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeec
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDV   62 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv   62 (251)
                      |++|+...      ||+|..+...|++.      ++.+..+.+
T Consensus         1 i~~f~d~~------Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPL------CPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEECCC------CHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            46788885      99999999998874      355555544

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=81.08  E-value=6.9  Score=32.30  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH---cCCccceeeccCCHHHHHHHHHHh
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT---HLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~---~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ..|+.|..+|      |++|++....|.+   .++.+..++++.+++...++.+..
T Consensus        70 ~vvv~Fwatw------C~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~  119 (185)
T PRK15412         70 PVLLNVWATW------CPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL  119 (185)
T ss_pred             EEEEEEECCC------CHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHc
Confidence            3577788887      9999986655544   467776777666665444454443

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=80.78  E-value=3.4  Score=32.77  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=35.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi--~g~~i  171 (251)
                      |+.|.++|      |+.|..+...|.+.      .+.|..+|++.+.  ..++.+..+  ...+|.+ |+  +|+.+
T Consensus        24 vV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~--V~~iPt~v~~~~~G~~v   90 (142)
T cd02950          24 LVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYR--VDGIPHFVFLDREGNEE   90 (142)
T ss_pred             EEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcC--CCCCCEEEEECCCCCEE
Confidence            45677776      99999887776543      2456666765432  223444554  7789985 45  36533

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PTZ00057 glutathione s-transferase; Provisional

Probab=80.56  E-value=5.9  Score=33.04  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=42.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH-H--HHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE-T--QQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~-~--~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +++||..+.      -+.+..++-+|+..|++|+.+.+....+ .  .++++....+....+|.+.++|..+
T Consensus         4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l   69 (205)
T PTZ00057          4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIF   69 (205)
T ss_pred             ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEE
Confidence            478888764      7788899999999999999987753222 1  1222210112456799999887543

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=80.09  E-value=8.5  Score=29.17  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=30.7

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeeccCCHHHHHHHHHHh
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ..|+.|..+|      |+.|.+....|++.    ++.+-.++++.+.+..+++.+..
T Consensus        27 ~vvv~F~a~~------C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~   77 (127)
T cd03010          27 PYLLNVWASW------CAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARH   77 (127)
T ss_pred             EEEEEEEcCc------CHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhc
Confidence            4678888887      99999877777654    35555555555555555554443

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		2e-05

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 121 CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL 180
           C + K +L     +F++ D   + E + E +ER G +    PQIF+  VH+G  D +  L
Sbjct: 19  CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTF--PQIFIGSVHVGGCDDLYAL 76
Query: 181 NESGELRRILKPYK 194
            + G+L  +LK  K
Sbjct: 77  EDEGKLDSLLKTGK 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	6e-25
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	2e-17
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	1e-22
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	1e-14
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	5e-22
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	2e-14
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	4e-12
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-07
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	4e-12
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	2e-07
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	5e-12
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	5e-07
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	2e-09
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	7e-05
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	4e-09
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	2e-04
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	6e-09
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-04
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	7e-09
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	6e-04
1kte_A	105	Thioltransferase; redox-active center, electron tr	8e-09
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	8e-09
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	3e-04
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	1e-08
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	3e-08
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	4e-08
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	4e-08
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	7e-08
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	1e-07
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	4e-07
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	4e-06
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	5e-06
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	6e-06
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	9e-06
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	1e-05
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	1e-05
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	4e-04
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	2e-05
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	1e-04
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	5e-05
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	5e-05
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	7e-05
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	7e-05
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	1e-04
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	1e-04
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	2e-04
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	3e-04
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	6e-04

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 93.7 bits (233), Expect = 6e-25
 Identities = 19/89 (21%), Positives = 36/89 (40%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            + +YST++   R+   +  +V +IL    +++   D+      + E +   G      P
Sbjct: 3   GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62

Query: 163 QIFVEGVHIGDADAIERLNESGELRRILK 191
           QI     + GD +      E   L+  LK
Sbjct: 63  QIVNGNHYCGDYELFVEAVEQDTLQEFLK 91

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 73.7 bits (181), Expect = 2e-17
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 25  KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
            + +YST++   R+   +  +V +IL    +++   D+      + E +   G      P
Sbjct: 3   GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62

Query: 85  QIFVEGVHIGTWQE----KEAGK 103
           QI     + G ++      E   
Sbjct: 63  QIVNGNHYCGDYELFVEAVEQDT 85

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 88.9 bits (220), Expect = 1e-22
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 160
           I +Y  +         +   V   L  + + F++KD+  + E ++  +E +  +      
Sbjct: 2   IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61

Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA 198
               PQIF E  + GD DA     E+  +   L     P +
Sbjct: 62  YPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGS 102

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 26  IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 82
           I +Y  +         +   V   L  + + F++KD+  + E ++  +E +  +      
Sbjct: 2   IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61

Query: 83  ---VPQIFVEGVHIGTWQE----KEAGKI 104
               PQIF E  + G +      +E   +
Sbjct: 62  YPLPPQIFNESQYRGDYDAFFEARENNAV 90

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 86.5 bits (214), Expect = 5e-22
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 160
           I ++  +         +   V + L  + ++F++ D+ MS E +Q   + +  +      
Sbjct: 10  IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69

Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILK 191
               PQIF    + GD D+     ES  +   L 
Sbjct: 70  NPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLG 103

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 26  IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN--- 82
           I ++  +         +   V + L  + ++F++ D+ MS E +Q   + +  +      
Sbjct: 10  IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69

Query: 83  ---VPQIFVEGVHIGTWQE----KEAGKI 104
               PQIF    + G +      KE+  +
Sbjct: 70  NPLPPQIFNGDRYCGDYDSFFESKESNTV 98

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 160
            +++Y+         Y  C + K +L     +F++ D   + E + E +ER G  T    
Sbjct: 7   DVIIYTRPGC----PY--CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNT---- 56

Query: 161 VPQIFVEGVHIGDADAIERLNESGELRRILK 191
            PQIF+  VH+G  D +  L + G+L  +LK
Sbjct: 57  FPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 82
           +++Y+         Y  C + K +L     +F++ D   + E + E +ER G  T    
Sbjct: 7  DVIIYTRPGC----PY--CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNT---- 56

Query: 83 VPQIFVEGVHIG 94
           PQIF+  VH+G
Sbjct: 57 FPQIFIGSVHVG 68

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 160
            + +Y+         Y  C + K +L +  V F +  +  +   ++E  +R G  T    
Sbjct: 2   NVEIYTKETCP----Y--CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTT---- 51

Query: 161 VPQIFVEGVHIGDADAIERLNESGELRRILK 191
           VPQIF++  HIG  D +  L+  G L  +LK
Sbjct: 52  VPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG--TDVIN 82
           + +Y+         Y  C + K +L +  V F +  +  +   ++E  +R G  T    
Sbjct: 2  NVEIYTKETCP----Y--CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTT---- 51

Query: 83 VPQIFVEGVHIG 94
          VPQIF++  HIG
Sbjct: 52 VPQIFIDAQHIG 63

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 91  VHIGTWQEKEAGKIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQE 149
            H        + KI +Y+ +        +  C++   +L+   V+F +  +    E ++ 
Sbjct: 5   HHHHHHGSAVSAKIEIYTWSTCP-----F--CMRALALLKRKGVEFQEYCIDGDNEAREA 57

Query: 150 FKERLG---TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
              R     +    +PQIF++  HIG  D I  L+ +G+L  +L 
Sbjct: 58  MAARANGKRS----LPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 80
          KI +Y+ +        +  C++   +L+   V+F +  +    E ++    R     +  
Sbjct: 17 KIEIYTWSTCP-----F--CMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRS-- 67

Query: 81 INVPQIFVEGVHIG 94
            +PQIF++  HIG
Sbjct: 68 --LPQIFIDDQHIG 79

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 158
           +I++Y+          Y  C + + +L    VK+ D D   S   +QE  +R     T  
Sbjct: 7   EIILYTRPNCP-----Y--CKRARDLLDKKGVKYTDIDA--STSLRQEMVQRANGRNT-- 55

Query: 159 INVPQIFVEGVHIGDADAIERLNESGELRRILK 191
              PQIF+   H+G  D +  L   G+L  +L+
Sbjct: 56  --FPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDV 80
          +I++Y+          Y  C + + +L    VK+ D D   S   +QE  +R     T  
Sbjct: 7  EIILYTRPNCP-----Y--CKRARDLLDKKGVKYTDIDA--STSLRQEMVQRANGRNT-- 55

Query: 81 INVPQIFVEGVHIG 94
             PQIF+   H+G
Sbjct: 56 --FPQIFIGDYHVG 67

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 22/99 (22%)

Query: 103 KIVMYSTTMGIVRDT--YHRCLKVKQILRTHLVKFDDKDVFM------SRETQQEFKERL 154
           K+ ++         T  +  C     IL     K    ++          E +  F++  
Sbjct: 20  KVTIFVKY------TCPF--CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT 71

Query: 155 G--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
           G  T    VP+IF     IG    +  ++    L  IL 
Sbjct: 72  GGKT----VPRIFFGKTSIGGYSDLLEIDNMDALGDILS 106

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 22/80 (27%)

Query: 25 KIVMYSTTMGIVRDT--YHRCLKVKQILRTHLVKFDDKDVFM------SRETQQEFKERL 76
          K+ ++         T  +  C     IL     K    ++          E +  F++  
Sbjct: 20 KVTIFVKY------TCPF--CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT 71

Query: 77 G--TDVINVPQIFVEGVHIG 94
          G  T    VP+IF     IG
Sbjct: 72 GGKT----VPRIFFGKTSIG 87

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLG--T 156
            +V++S T  G        C +VKQ+L      +   ++       + Q       G  T
Sbjct: 21  PVVVFSKTYCGY-------CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73

Query: 157 DVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
               VP +F+ G  IG  D +   ++  EL  +L+
Sbjct: 74  ----VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 17/76 (22%)

Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLG--T 78
           +V++S T  G        C +VKQ+L      +   ++       + Q       G  T
Sbjct: 21 PVVVFSKTYCGY-------CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73

Query: 79 DVINVPQIFVEGVHIG 94
              VP +F+ G  IG
Sbjct: 74 ----VPNVFIGGKQIG 85

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 17/95 (17%)

Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG---T 156
           ++V++S +        +    +VK++  +  V+ +  + D        QE    +    T
Sbjct: 18  RVVIFSKSYCP-----H--STRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70

Query: 157 DVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
               VP IFV  VH+G  D   +  +SG L+++L+
Sbjct: 71  ----VPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%)

Query: 25 KIVMYSTTM-GIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG---T 78
          ++V++S +        +    +VK++  +  V+ +  + D        QE    +    T
Sbjct: 18 RVVIFSKSYCP-----H--STRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70

Query: 79 DVINVPQIFVEGVHIG 94
              VP IFV  VH+G
Sbjct: 71 ----VPNIFVNKVHVG 82

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 20/98 (20%)

Query: 103 KIVMYSTTM-GIVRDTYHRCLKVKQILR-----THLVKFDDKDVFMSRETQQEFKERLG- 155
           K+V++           +  C K +++L        L++F D          Q++ ++L  
Sbjct: 13  KVVVFIKPTCP-----F--CRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
             T    VP++F+    IG    +E +++ GEL   L+
Sbjct: 66  ART----VPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 22/98 (22%)

Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 155
            +V+YS T             C +VK + +   V+      D+      + Q+  +   G
Sbjct: 20  TVVIYSKTWCSY---------CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG 70

Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
             T    VP +FV G HIG      +LN  G+L  +L 
Sbjct: 71  QHT----VPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 22/79 (27%)

Query: 25 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 77
           +V+YS T             C +VK + +   V+      D+      + Q+  +   G
Sbjct: 20 TVVIYSKTWCSY---------CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG 70

Query: 78 --TDVINVPQIFVEGVHIG 94
            T    VP +FV G HIG
Sbjct: 71 QHT----VPNVFVCGKHIG 85

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-------SRETQQEFKE 152
           ++ + + T             C      L   L     K + +         E Q   +E
Sbjct: 38  EVFVAAKTYCPY---------CKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 88

Query: 153 RLG--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKPY 193
             G  T    VP +++ G HIG    +E L ++G+L  ILKP 
Sbjct: 89  ISGQKT----VPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 127

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 21/97 (21%)

Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD--DKDVFMSRETQQEFKERLG-- 155
            +V++S T             C   K++     V +   + D+       Q+   ++   
Sbjct: 28  CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 78

Query: 156 -TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
            T    VP+IFV G  IG A    RL++ G+L  ++ 
Sbjct: 79  RT----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF------MSRETQQEFKERLG- 155
            I+++S +      +Y     +K++L        +  +          E Q+  K   G 
Sbjct: 15  PIIIFSKST----CSY--SKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGR 68

Query: 156 -TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
            T    VP + V GV  G  + I++L+  G+L   L+
Sbjct: 69  GT----VPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 103 KIVMYS-TTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFM-SRETQQEFKERL 154
           +I + S T        Y  C      L   L      V     +      + Q    E  
Sbjct: 26  EIFVASKTYCP-----Y--CHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 78

Query: 155 G--TDVINVPQIFVEGVHIGDADAIERLNESGELRRILKP 192
           G  T    VP I++ G HIG  D ++ L E+GEL  +L+P
Sbjct: 79  GQRT----VPNIYINGKHIGGNDDLQELRETGELEELLEP 114

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 23/98 (23%)

Query: 103 KIVMYSTT---MGIVRDTYHRCLKVKQILRTHLVKFD----DKDVFMSRETQQEFKERLG 155
            +V++S T             C   K++     V +     D   + + + Q    +  G
Sbjct: 50  CVVIFSKTSCSY---------CTMAKKLFHDMNVNYKVVELDLLEYGN-QFQDALYKMTG 99

Query: 156 --TDVINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
             T    VP+IFV G  IG A    RL++ G+L  ++ 
Sbjct: 100 ERT----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTD 157
           + V++  +       Y  C++ K +           ++   D+     T+++ +++ G  
Sbjct: 2   QTVIFGRSGCP----Y--CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55

Query: 158 VINVPQIFVEGVHIGDADAIERLNE 182
           V  VPQIFV+  HIG         +
Sbjct: 56  VETVPQIFVDQQHIGGYTDFAAWVK 80

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTD 79
          + V++  +       Y  C++ K +           ++   D+     T+++ +++ G  
Sbjct: 2  QTVIFGRSGCP----Y--CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55

Query: 80 VINVPQIFVEGVHIG 94
          V  VPQIFV+  HIG
Sbjct: 56 VETVPQIFVDQQHIG 70

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 121 CLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA 174
                  L   L      V     +        Q     +      VP I++ G HIG  
Sbjct: 274 SHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI-NGQRTVPNIYINGKHIGGN 332

Query: 175 DAIERLNESGELRRILK 191
           D ++ L E+GEL  +L+
Sbjct: 333 DDLQELRETGELEELLE 349

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
           ++ +IL +  V+++  D+    E +Q  K    ++    PQ++V G  +G  D ++ L +
Sbjct: 35  QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVGGLDIVKELKD 92

Query: 183 SGELRRILK 191
           +GEL  ILK
Sbjct: 93  NGELLPILK 101

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
            V QIL+   V F+D ++  +   +Q  KE   ++    PQ+++ G   G  D      +
Sbjct: 38  TVVQILKNLNVPFEDVNILENEMLRQGLKEY--SNWPTFPQLYIGGEFFGGCDITLEAFK 95

Query: 183 SGELRRILK 191
           +GEL+  ++
Sbjct: 96  TGELQEEVE 104

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
           ++ +IL +  V+++  D+    E +Q  K    ++    PQ++V+G  +G  D ++ L E
Sbjct: 37  QILEILNSTGVEYETFDILEDEEVRQGLKAY--SNWPTYPQLYVKGELVGGLDIVKELKE 94

Query: 183 SGELRRILK 191
           +GEL  IL+
Sbjct: 95  NGELLPILR 103

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
           ++ +IL  H ++F   D+F   E +Q  K    +     PQ++V G  IG  D I+ L  
Sbjct: 36  QMVEILHKHNIQFSSFDIFSDEEVRQGLKAY--SSWPTYPQLYVSGELIGGLDIIKELEA 93

Query: 183 SGELRRILK 191
           S EL  I  
Sbjct: 94  SEELDTICP 102

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
           +I +Y+       +   +C   K+ +      F+  +V    E  +  +   G     +P
Sbjct: 2   RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLP 52

Query: 163 QIFVEGVHIG--DADAIERLNESGELR 187
            +    +       D I RL+ +    
Sbjct: 53  VVIAGDLSWSGFRPDMINRLHPAPHAA 79

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
          +I +Y+       +   +C   K+ +      F+  +V    E  +  +   G     +P
Sbjct: 2  RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLP 52

Query: 85 QIFVEGVHIG 94
           +    +   
Sbjct: 53 VVIAGDLSWS 62

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 20/94 (21%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLGTDVIN- 160
           +++MY         T   C +  + L+   V F+   +  +  E +++  E++    I+ 
Sbjct: 13  EVLMYGL------STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKV--HSISG 64

Query: 161 ---VPQIFVEGVHIGDADAIERLNESGELRRILK 191
              VP +     H+   +         +L+ +++
Sbjct: 65  SYSVPVVVKGDKHVLGYN-------EEKLKELIR 91

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERLGTDVIN- 82
          +++MY         T   C +  + L+   V F+   +  +  E +++  E++    I+ 
Sbjct: 13 EVLMYGL------STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKV--HSISG 64

Query: 83 ---VPQIFVEGVHIG 94
             VP +     H+ 
Sbjct: 65 SYSVPVVVKGDKHVL 79

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 123 KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE 182
           +  Q L     +F   D+  + + + E  +    +    PQ++V+G  +G  D +  + +
Sbjct: 55  QAVQALAACGERFAYVDILQNPDIRAELPKY--ANWPTFPQLWVDGELVGGCDIVIEMYQ 112

Query: 183 SGELRRILK 191
            GEL++++K
Sbjct: 113 RGELQQLIK 121

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 25  KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN-- 82
           K+ +Y+         Y  C+  KQ    + + FD+  +      + +F + +        
Sbjct: 5   KVKIYTRNGCP----Y--CVWAKQWFEENNIAFDETIIDDY-AQRSKFYDEMNQSGKVIF 57

Query: 83  ----VPQIFVEGVHIGTWQEKEA 101
               VPQIF++  HIG + E +A
Sbjct: 58  PISTVPQIFIDDEHIGGFTELKA 80

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVIN-- 160
           K+ +Y+         Y  C+  KQ    + + FD+  +      + +F + +        
Sbjct: 5   KVKIYTRNGCP----Y--CVWAKQWFEENNIAFDETIIDDY-AQRSKFYDEMNQSGKVIF 57

Query: 161 ----VPQIFVEGVHIGDAD 175
               VPQIF++  HIG   
Sbjct: 58  PISTVPQIFIDDEHIGGFT 76

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            I +Y+           +C   K+ L    + ++  D+ +  E +      LG   +  P
Sbjct: 2   SITLYTK------PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LG--YVQAP 52

Query: 163 QIFVEGVHIG--DADAIERLNES 183
            + V+G H      + I++L  +
Sbjct: 53  VVEVDGEHWSGFRPERIKQLQAA 75

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL--G 77
           + GK++MY  +      T   C K K++L    V FD   V  +  + ++E  E +   
Sbjct: 19 VDRGKVIMYGLS------TCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRF 72

Query: 78 TDVINVPQIFVEGVHI 93
             ++ P   +     
Sbjct: 73 NPSVSFPTTIINDEKA 88

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 99  KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL--G 155
            + GK++MY  +      T   C K K++L    V FD   V  +  + ++E  E +   
Sbjct: 19  VDRGKVIMYGLS------TCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRF 72

Query: 156 TDVINVPQIFVEGVHI 171
              ++ P   +     
Sbjct: 73  NPSVSFPTTIINDEKA 88

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 43 CLKVKQILRTHLVKFDDKDV-----FMSRETQQEFKERLGTDVIN---VPQIFVE-GVHI 93
          C   K++L      F+  ++         E   E   +LG D      +PQ+F   G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76

Query: 94 GTWQE 98
          G + +
Sbjct: 77 GGFDQ 81

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 121 CLKVKQILRTHLVKFDDKDV-----FMSRETQQEFKERLGTDVIN---VPQIFVE-GVHI 171
           C   K++L      F+  ++         E   E   +LG D      +PQ+F   G HI
Sbjct: 17  CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76

Query: 172 GDADAIERLNE 182
           G  D +    +
Sbjct: 77  GGFDQLREYFK 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.88
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.86
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.85
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.85
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.85
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.84
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.84
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.83
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.82
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.81
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.81
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.81
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.78
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.78
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.77
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.73
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.7
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.69
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.67
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.67
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.66
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.65
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.65
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.64
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.63
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.63
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.63
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.61
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.6
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.6
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.59
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.59
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.59
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.59
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.59
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.57
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.56
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.52
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.52
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.52
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.52
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.51
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.49
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.47
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.46
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.43
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.38
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.38
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.36
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.36
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.36
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.35
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.33
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.33
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.32
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.32
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.32
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.28
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.27
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.25
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.22
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.22
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.22
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.21
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.21
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.19
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.16
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.13
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.09
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.96
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.9
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.89
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.88
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.85
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.85
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.84
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.79
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.78
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.72
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.72
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.71
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.55
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.5
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.46
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.46
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.37
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.37
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.35
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.35
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.32
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.29
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.29
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.22
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.16
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.15
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	97.95
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.91
3rdw_A	121	Putative arsenate reductase; structural genomics,	97.89
3l78_A	120	Regulatory protein SPX; transcription, transcripti	97.82
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.8
3gkx_A	120	Putative ARSC family related protein; ARSC family	97.8
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.8
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.77
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	97.76
3fz4_A	120	Putative arsenate reductase; APC61768, structural	97.73
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.7
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.67
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.6
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	97.53
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.47
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.45
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.38
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.31
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.22
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.18
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.12
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	97.09
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.07
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.02
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.94
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.94
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	96.89
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	96.87
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	96.85
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	96.82
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.81
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	96.81
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.78
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	96.77
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	96.75
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	96.74
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	96.73
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	96.73
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	96.7
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	96.68
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	96.66
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.64
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.64
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	96.64
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.64
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	96.63
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.62
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	96.62
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.61
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.6
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	96.59
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.58
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.58
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	96.58
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	96.56
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	96.56
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	96.54
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.54
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	96.52
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.51
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.51
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.5
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	96.49
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.49
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.49
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.48
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.47
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	96.47
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	96.47
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	96.46
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	96.46
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.44
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.44
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.42
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.42
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.41
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.41
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.41
3lyk_A	216	Stringent starvation protein A homolog; structural	96.4
3lyp_A	215	Stringent starvation protein A; structural genomic	96.39
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.39
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.39
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	96.39
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.37
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.37
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	96.36
4dej_A	231	Glutathione S-transferase related protein; transfe	96.34
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.33
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	96.32
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.3
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	96.27
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	96.27
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	96.27
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	96.27
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.26
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.26
2l57_A	126	Uncharacterized protein; structural genomics, unkn	96.25
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	96.25
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	96.25
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	96.25
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	96.24
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	96.22
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	96.22
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	96.21
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.21
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	96.2
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	96.2
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	96.18
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	96.18
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	96.18
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	96.18
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	96.18
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	96.17
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	96.16
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.15
3lyp_A	215	Stringent starvation protein A; structural genomic	96.15
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.13
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	96.13
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	96.13
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	96.12
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	96.11
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	96.1
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.09
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	96.09
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.07
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	96.07
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.07
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	96.05
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	96.04
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	96.04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	96.03
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.03
3n5o_A	235	Glutathione transferase; seattle structural genomi	96.03
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	96.03
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	96.02
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	96.01
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	96.01
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	96.01
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.0
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.99
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	95.98
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	95.98
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	95.98
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	95.97
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.97
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	95.97
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	95.97
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	95.96
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	95.96
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	95.95
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	95.94
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	95.94
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	95.93
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	95.92
3lyk_A	216	Stringent starvation protein A homolog; structural	95.91
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	95.91
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	95.91
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	95.9
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	95.88
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.88
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	95.88
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	95.87
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	95.85
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.84
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.83
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	95.82
3lxz_A	229	Glutathione S-transferase family protein; structur	95.82
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	95.82
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	95.82
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	95.81
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	95.81
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	95.8
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	95.8
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	95.8
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	95.77
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	95.76
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	95.76
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	95.75
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	95.75
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	95.75
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	95.73
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	95.73
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	95.72
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	95.72
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	95.72
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	95.71
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	95.71
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	95.7
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	95.68
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	95.66
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	95.66
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	95.64
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	95.63
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	95.62
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	95.61
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	95.59
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	95.58
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	95.58
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	95.57
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	95.55
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	95.54
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	95.52
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	95.52
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	95.5
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	95.5
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	95.47
3lxz_A	229	Glutathione S-transferase family protein; structur	95.46
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	95.46
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	95.46
3n5o_A	235	Glutathione transferase; seattle structural genomi	95.45
4dej_A	231	Glutathione S-transferase related protein; transfe	95.45
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	95.45
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	95.45
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	95.44
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	95.44
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	95.44
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	95.44
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	95.43
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.43
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	95.42
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	95.41
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	95.4
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	95.39
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	95.38
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	95.38
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	95.36
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	95.34
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	95.34
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	95.34
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	95.33
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	95.33
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	95.32
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	95.31
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.3
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	95.3
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	95.29
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	95.28
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	95.28
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	95.28
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	95.27
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	95.26
1r5a_A	218	Glutathione transferase; glutathione S-transferase	95.25
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.25
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	95.23
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	95.2
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	95.2
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	95.18
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	95.16
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	95.15
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.15
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	95.14
3niv_A	222	Glutathione S-transferase; structural genomics, PS	95.13
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	95.12
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.11
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	95.11
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	95.09
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	95.05
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	95.05
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.04
1r5a_A	218	Glutathione transferase; glutathione S-transferase	95.04
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	95.0
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	94.99
3niv_A	222	Glutathione S-transferase; structural genomics, PS	94.99
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	94.98
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	94.97
4ecj_A	244	Glutathione S-transferase; transferase-like protei	94.97
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	94.94
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	94.94
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	94.93
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	94.93
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	94.92
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	94.92
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	94.91
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	94.88
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	94.88
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	94.87
2l57_A	126	Uncharacterized protein; structural genomics, unkn	94.87
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	94.86
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	94.85
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	94.84
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	94.81
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	94.79
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	94.78
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	94.77
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	94.75
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	94.74
4exj_A	238	Uncharacterized protein; transferase-like protein,	94.73
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	94.71
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	94.68
4glt_A	225	Glutathione S-transferase-like protein; structural	94.67
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	94.65
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	94.64
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	94.64
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	94.62
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	94.61
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	94.6
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.58
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	94.57
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	94.57
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	94.57
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	94.56
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	94.55
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	94.55
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	94.52
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	94.45
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	94.43
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	94.36
4glt_A	225	Glutathione S-transferase-like protein; structural	94.36
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	94.26
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	94.25
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	94.24
4exj_A	238	Uncharacterized protein; transferase-like protein,	94.17
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	94.17
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	94.16
2kuc_A	130	Putative disulphide-isomerase; structural genomics	94.14
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	94.13
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	94.1
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	94.09
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	94.05
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	94.05
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	94.0
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	93.99
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	93.98
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	93.98
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	93.95
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	93.94
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	93.89
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	93.85
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	93.84
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	93.82
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	93.8
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	93.74
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	93.69
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	93.68
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	93.67
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	93.66
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	93.66
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	93.48
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	93.44
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	93.43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	93.42
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	93.41
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	93.41
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	93.4
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	93.39
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	93.3
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	93.2
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	93.12
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	93.12
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	93.11
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	92.24
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	93.1
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	92.99
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	92.97
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	92.93
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	92.08
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	92.85
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	92.84
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	92.83
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	92.77
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	92.72
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	92.68
3ktb_A	106	Arsenical resistance operon trans-acting represso;	92.68
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	92.68
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	92.65
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	92.62
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	92.59
4ecj_A	244	Glutathione S-transferase; transferase-like protei	92.59
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	92.52
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	92.52
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	92.52
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	92.51
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	92.49
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	92.49
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	92.47
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	92.41
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	92.38
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	92.38
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	92.33
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	92.33
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	92.3
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	92.28
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	92.24
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	92.22
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	92.13
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	91.34
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	92.1
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	92.09
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	92.04
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	92.01
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	91.98
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	91.95
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	91.86
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	91.8
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	91.8
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	91.77
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	91.73
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	91.72
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	91.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	91.65
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	90.9
2kuc_A	130	Putative disulphide-isomerase; structural genomics	91.59
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	91.5
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	91.4

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.88  E-value=4.2e-23  Score=159.66  Aligned_cols=95  Identities=23%  Similarity=0.338  Sum_probs=85.2

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCC-ceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV-KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v-~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +..++||||+++.. -.+.|++|.+++++|+++++ +|.++|+..+++.+++|.+++|  ++|+|||||+|++|||+|+|
T Consensus        17 i~~~~VvvF~Kgt~-~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg--~~TvPqIFI~g~~IGG~Ddl   93 (118)
T 2wul_A           17 VKKDKVVVFLKGTP-EQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN--WPTIPQVYLNGEFVGGCDIL   93 (118)
T ss_dssp             HHHSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHT--CCSSCEEEETTEEEECHHHH
T ss_pred             HhcCCEEEEEcCCC-CCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhcc--CCCCCeEeECCEEECCHHHH
Confidence            45789999999731 22349999999999999999 6999999999999999999998  89999999999999999999


Q ss_pred             HHHHHcCChhhhhccCCCC
Q psy15946        178 ERLNESGELRRILKPYKSP  196 (251)
Q Consensus       178 ~~l~e~G~L~~~L~~~~~~  196 (251)
                      .+|+++|+|.++|+.+...
T Consensus        94 ~~l~~~GeL~~lL~~~Gi~  112 (118)
T 2wul_A           94 LQMHQNGDLVEELKKLGIH  112 (118)
T ss_dssp             HHHHHHTHHHHHHHHTTCC
T ss_pred             HHHHHCCCHHHHHHHcCCc
Confidence            9999999999999986643

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.86  E-value=9.4e-22  Score=150.71  Aligned_cols=89  Identities=26%  Similarity=0.372  Sum_probs=83.6

Q ss_pred             cchheeeeee-----ecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCCh
Q psy15946        100 EAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA  174 (251)
Q Consensus       100 ~~~~Vviyt~-----sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~  174 (251)
                      ..++|+||++     +      +||+|.+++++|+++||+|+++||+.+++.+++|.+++|  +.++|+|||||++|||+
T Consensus        14 ~~~~Vvlf~kg~~~~~------~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g--~~tvP~ifi~g~~iGG~   85 (111)
T 3zyw_A           14 HAAPCMLFMKGTPQEP------RCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS--WPTYPQLYVSGELIGGL   85 (111)
T ss_dssp             TSSSEEEEESBCSSSB------SSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEETTEEEECH
T ss_pred             hcCCEEEEEecCCCCC------cchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC--CCCCCEEEECCEEEecH
Confidence            5678999999     6      599999999999999999999999999999999999997  89999999999999999


Q ss_pred             HHHHHHHHcCChhhhhccCCCC
Q psy15946        175 DAIERLNESGELRRILKPYKSP  196 (251)
Q Consensus       175 d~l~~l~e~G~L~~~L~~~~~~  196 (251)
                      |++.+|+++|+|.++|+.++..
T Consensus        86 d~l~~l~~~G~L~~~L~~a~~~  107 (111)
T 3zyw_A           86 DIIKELEASEELDTICPKAAEN  107 (111)
T ss_dssp             HHHHHHHHTTCHHHHSCCCCCC
T ss_pred             HHHHHHHHCCCHHHHHHhCccc
Confidence            9999999999999999987643

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.85  E-value=2.7e-21  Score=149.91  Aligned_cols=87  Identities=25%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             eeeeeeecccccCCCcch------HHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRC------LKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C------~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~~i  171 (251)
                      |+|||+++      |++|      .+++++|+++||+|+|+||++|++.+++|.++++      .+.+++|||||||+||
T Consensus         2 V~vYtt~~------c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i   75 (121)
T 1u6t_A            2 IRVYIASS------SGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR   75 (121)
T ss_dssp             EEEEECTT------CSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred             EEEEecCC------CCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence            78999996      7776      8999999999999999999999999999999982      0267999999999999


Q ss_pred             CChHHHHHHHHcCChhhhhccCCCC
Q psy15946        172 GDADAIERLNESGELRRILKPYKSP  196 (251)
Q Consensus       172 GG~d~l~~l~e~G~L~~~L~~~~~~  196 (251)
                      ||+|++.+|+++|+|.++|...+..
T Consensus        76 GG~Dd~~~l~e~g~L~~lL~~~~~~  100 (121)
T 1u6t_A           76 GDYDAFFEARENNAVYAFLGLTAPP  100 (121)
T ss_dssp             EEHHHHHHHHHTTCHHHHHTCCCCT
T ss_pred             echHHHHHhhhhChHHHHHcCCCCC
Confidence            9999999999999999999775543

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.85  E-value=3.8e-21  Score=142.26  Aligned_cols=86  Identities=21%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             chheeeeeeecccccCCCcch------HHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCCh
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRC------LKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA  174 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C------~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~  174 (251)
                      |.+|+||++++      |++|      .+++++|++++|+|+++||+.+++.+++|++++|.+..++|+|||||++|||+
T Consensus         1 M~~v~ly~~~~------C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~   74 (93)
T 1t1v_A            1 MSGLRVYSTSV------TGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDY   74 (93)
T ss_dssp             CCCEEEEECSS------CSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEH
T ss_pred             CCCEEEEEcCC------CCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCH
Confidence            35799999995      9999      89999999999999999999999999999999873256999999999999999


Q ss_pred             HHHHHHHHcCChhhhhcc
Q psy15946        175 DAIERLNESGELRRILKP  192 (251)
Q Consensus       175 d~l~~l~e~G~L~~~L~~  192 (251)
                      |++.+|+++|+|.++|+.
T Consensus        75 d~l~~l~~~g~L~~~l~~   92 (93)
T 1t1v_A           75 ELFVEAVEQDTLQEFLKL   92 (93)
T ss_dssp             HHHHHHHHTTCHHHHTTC
T ss_pred             HHHHHHHhcCCHHHHhCC
Confidence            999999999999999853

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.1e-21  Score=149.99  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=83.8

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCc---eeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~---~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      ..++|+||+++.. -.+.||+|.+++++|++++|+   |+++||..+++.+++|.+++|  +.++|+|||||++|||+|+
T Consensus        14 ~~~~Vvvfsk~t~-~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg--~~tvP~vfI~g~~iGG~d~   90 (121)
T 3gx8_A           14 ESAPVVLFMKGTP-EFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE--WPTIPQLYVNKEFIGGCDV   90 (121)
T ss_dssp             HSCSEEEEESBCS-SSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT--CCSSCEEEETTEEEESHHH
T ss_pred             ccCCEEEEEeccC-CCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC--CCCCCeEEECCEEEecHHH
Confidence            5678999999721 122499999999999999999   999999999999999999997  8999999999999999999


Q ss_pred             HHHHHHcCChhhhhccCCC
Q psy15946        177 IERLNESGELRRILKPYKS  195 (251)
Q Consensus       177 l~~l~e~G~L~~~L~~~~~  195 (251)
                      +.+|+++|+|.++|+.++.
T Consensus        91 l~~l~~~G~L~~~L~~~g~  109 (121)
T 3gx8_A           91 ITSMARSGELADLLEEAQA  109 (121)
T ss_dssp             HHHHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHcCChHHHHHHcCC
Confidence            9999999999999987654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.84  E-value=2e-21  Score=148.23  Aligned_cols=91  Identities=22%  Similarity=0.292  Sum_probs=81.9

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ..++|+||+++.. ..+.||+|.+++++|++++|+|+++||..+++.+++|.+++|  +.++|+|||||++|||+|++.+
T Consensus        16 ~~~~Vvvy~k~t~-~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~g~~iGG~d~l~~   92 (109)
T 3ipz_A           16 NSEKVVLFMKGTR-DFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIGGEFFGGCDITLE   92 (109)
T ss_dssp             TSSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEETTEEEECHHHHHH
T ss_pred             ccCCEEEEEecCC-CCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEECCEEEeCHHHHHH
Confidence            4678999999711 112499999999999999999999999999999999999997  8999999999999999999999


Q ss_pred             HHHcCChhhhhccC
Q psy15946        180 LNESGELRRILKPY  193 (251)
Q Consensus       180 l~e~G~L~~~L~~~  193 (251)
                      |+++|+|.++|+.+
T Consensus        93 l~~~G~L~~~L~~a  106 (109)
T 3ipz_A           93 AFKTGELQEEVEKA  106 (109)
T ss_dssp             HHHHSHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHh
Confidence            99999999999763

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=143.97  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             hheeeeeeecccccCCCcchH------HHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC------CCCCCCceEEECCe
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCL------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGV  169 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~------~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g------~~~~~vP~vfi~g~  169 (251)
                      .+|+||++++      |++|.      +++++|++++|+|+++||+.+++.+++|+++++      .+..++|+|||||+
T Consensus         8 m~V~vy~~~~------C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~   81 (111)
T 2ct6_A            8 MVIRVFIASS------SGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR   81 (111)
T ss_dssp             CCEEEEECSS------CSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE
T ss_pred             cEEEEEEcCC------CCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCE
Confidence            3699999995      99999      899999999999999999999999999999961      13789999999999


Q ss_pred             eeCChHHHHHHHHcCChhhhhccCCCC
Q psy15946        170 HIGDADAIERLNESGELRRILKPYKSP  196 (251)
Q Consensus       170 ~iGG~d~l~~l~e~G~L~~~L~~~~~~  196 (251)
                      +|||+|++.+|+++|+|.++|+..++.
T Consensus        82 ~iGG~d~l~~l~~~g~L~~~L~~~~~~  108 (111)
T 2ct6_A           82 YCGDYDSFFESKESNTVFSFLGLKSGP  108 (111)
T ss_dssp             EEEEHHHHHHHHTTTCHHHHHTCCSSS
T ss_pred             EEeCHHHHHHHHHcCCHHHHHcCCCCC
Confidence            999999999999999999999876643

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.82  E-value=1.6e-20  Score=148.74  Aligned_cols=91  Identities=19%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ...+|+||+++... .++|++|.+++++|++++|+|+++||+.+++.+++|++++|  +.++|+|||||++|||+|++.+
T Consensus        33 ~~~~Vvvy~ks~~~-~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G--~~tvP~VfI~G~~iGG~d~l~~  109 (135)
T 2wci_A           33 AENPILLYMKGSPK-LPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN--WPTFPQLWVDGELVGGCDIVIE  109 (135)
T ss_dssp             HHCSEEEEESBCSS-SBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEETTEEEESHHHHHH
T ss_pred             ccCCEEEEEEecCC-CCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC--CCCcCEEEECCEEEEChHHHHH
Confidence            46789999996544 35799999999999999999999999999999999999997  8899999999999999999999


Q ss_pred             HHHcCChhhhhccC
Q psy15946        180 LNESGELRRILKPY  193 (251)
Q Consensus       180 l~e~G~L~~~L~~~  193 (251)
                      |+++|+|.++|+.+
T Consensus       110 l~~~G~L~~~L~~~  123 (135)
T 2wci_A          110 MYQRGELQQLIKET  123 (135)
T ss_dssp             HHHHTHHHHHHHHH
T ss_pred             HHHCChHHHHHHHc
Confidence            99999999999764

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.4e-20  Score=145.37  Aligned_cols=88  Identities=22%  Similarity=0.361  Sum_probs=79.6

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhc---CCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGD  173 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~---~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG  173 (251)
                      .+.+|+||++++      ||+|.+++++|++.   +++|+++||+.+   ++.+++|.+.+|  +.++|+|||+|++|||
T Consensus        12 ~~~~Vvvysk~~------Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G--~~tVP~IfI~G~~IGG   83 (127)
T 3l4n_A           12 DLSPIIIFSKST------CSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTG--RGTVPNLLVNGVSRGG   83 (127)
T ss_dssp             TSCSEEEEECTT------CHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHS--CCSSCEEEETTEECCC
T ss_pred             ccCCEEEEEcCC------CccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcC--CCCcceEEECCEEEcC
Confidence            467899999995      99999999999985   789999999865   567888989987  8999999999999999


Q ss_pred             hHHHHHHHHcCChhhhhccCCC
Q psy15946        174 ADAIERLNESGELRRILKPYKS  195 (251)
Q Consensus       174 ~d~l~~l~e~G~L~~~L~~~~~  195 (251)
                      +|++.+|+++|+|.++|+.++.
T Consensus        84 ~ddl~~l~~~G~L~~lL~~~g~  105 (127)
T 3l4n_A           84 NEEIKKLHTQGKLLESLQVWSD  105 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCHHHHHHHhcC
Confidence            9999999999999999988653

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.81  E-value=1.2e-19  Score=136.12  Aligned_cols=86  Identities=27%  Similarity=0.486  Sum_probs=80.9

Q ss_pred             cccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh-CCCCCCCceEEECCeeeCChHH
Q psy15946         98 EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL-GTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus        98 ~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~-g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      .....+|+||++++      |++|.+++++|++++++|+++||+.+++.+++|.+++ |  ..++|+|||+|++|||+++
T Consensus        12 ~~~~~~v~vy~~~~------Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g--~~~vP~ifi~g~~igG~d~   83 (99)
T 3qmx_A           12 SAVSAKIEIYTWST------CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANG--KRSLPQIFIDDQHIGGCDD   83 (99)
T ss_dssp             SCCCCCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTT--CCCSCEEEETTEEEESHHH
T ss_pred             ccCCCCEEEEEcCC------ChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCC--CCCCCEEEECCEEEeChHH
Confidence            34567899999996      9999999999999999999999999999999999998 6  8899999999999999999


Q ss_pred             HHHHHHcCChhhhhc
Q psy15946        177 IERLNESGELRRILK  191 (251)
Q Consensus       177 l~~l~e~G~L~~~L~  191 (251)
                      +.+|+++|+|.++|+
T Consensus        84 l~~~~~~g~L~~~L~   98 (99)
T 3qmx_A           84 IYALDGAGKLDPLLH   98 (99)
T ss_dssp             HHHHHHTTCHHHHHT
T ss_pred             HHHHHHcCCHHHHhc
Confidence            999999999999986

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.81  E-value=1.2e-19  Score=138.13  Aligned_cols=93  Identities=22%  Similarity=0.345  Sum_probs=83.5

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ..++|+||+++.. .+.+|++|.+++++|++++++|+++||+.+++.+++|.+++|  ..++|+|||+|++|||++++.+
T Consensus        13 ~~~~vvvy~~g~~-~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g--~~~vP~ifi~g~~igG~d~l~~   89 (109)
T 1wik_A           13 NKASVMLFMKGNK-QEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN--WPTYPQLYVRGDLVGGLDIVKE   89 (109)
T ss_dssp             TTSSEEEEESSTT-TCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS--CCSSCEEECSSSEEECHHHHHH
T ss_pred             ccCCEEEEEecCC-CCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC--CCCCCEEEECCEEEcCHHHHHH
Confidence            4567999999332 123699999999999999999999999999999999999997  8899999999999999999999


Q ss_pred             HHHcCChhhhhccCCC
Q psy15946        180 LNESGELRRILKPYKS  195 (251)
Q Consensus       180 l~e~G~L~~~L~~~~~  195 (251)
                      |+++|+|.++|+.+.+
T Consensus        90 l~~~g~L~~~L~~a~~  105 (109)
T 1wik_A           90 LKDNGELLPILKGESG  105 (109)
T ss_dssp             HHHHTCSHHHHHTCCS
T ss_pred             HHHCCCHHHHHhcccC
Confidence            9999999999987553

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.78  E-value=2.4e-19  Score=137.54  Aligned_cols=85  Identities=25%  Similarity=0.398  Sum_probs=77.6

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      ..++|+||++++      ||+|.+++.+|++++++|+++||+.+   .+.+++|.+.+|  ..++|+|||||++|||+|+
T Consensus        15 ~~~~v~vy~~~~------Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g--~~tvP~vfi~g~~igG~d~   86 (114)
T 3h8q_A           15 ERSRVVIFSKSY------CPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN--QKTVPNIFVNKVHVGGCDQ   86 (114)
T ss_dssp             HHCSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHS--CCSSCEEEETTEEEESHHH
T ss_pred             ccCCEEEEEcCC------CCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhC--CCccCEEEECCEEEeCHHH
Confidence            466899999995      99999999999999999999999853   456788888887  8999999999999999999


Q ss_pred             HHHHHHcCChhhhhcc
Q psy15946        177 IERLNESGELRRILKP  192 (251)
Q Consensus       177 l~~l~e~G~L~~~L~~  192 (251)
                      +.+|+++|+|.++|+.
T Consensus        87 l~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           87 TFQAYQSGLLQKLLQE  102 (114)
T ss_dssp             HHHHHHHTHHHHHHHS
T ss_pred             HHHHHHCCCHHHHhcC
Confidence            9999999999999984

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.78  E-value=5.5e-19  Score=133.32  Aligned_cols=89  Identities=22%  Similarity=0.378  Sum_probs=80.1

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .++|+||+++... +..|++|.+++.+|++++++|.++||+.+++.+++|.+++|  ..++|+|||||++|||+|++.+|
T Consensus        16 ~~~vvvf~~g~~~-~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g--~~~vP~v~i~g~~igg~d~~~~l   92 (105)
T 2yan_A           16 KASVMLFMKGNKQ-EAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN--WPTYPQLYVKGELVGGLDIVKEL   92 (105)
T ss_dssp             SSSEEEEESBCSS-SBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEETTEEEECHHHHHHH
T ss_pred             cCCEEEEEecCCC-CCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC--CCCCCeEEECCEEEeChHHHHHH
Confidence            4569999983221 33599999999999999999999999999999999999997  88999999999999999999999


Q ss_pred             HHcCChhhhhcc
Q psy15946        181 NESGELRRILKP  192 (251)
Q Consensus       181 ~e~G~L~~~L~~  192 (251)
                      +++|+|+++|+.
T Consensus        93 ~~~g~L~~~l~~  104 (105)
T 2yan_A           93 KENGELLPILRG  104 (105)
T ss_dssp             HHTTCHHHHHTT
T ss_pred             HHCCCHHHHhcc
Confidence            999999999964

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.77  E-value=7.9e-19  Score=133.85  Aligned_cols=88  Identities=26%  Similarity=0.383  Sum_probs=78.5

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC----HHHHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS----RETQQEFKERLGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~----~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      ..++|++|++++      |++|.+++.+|++++++|+++||+.+    ++.+++|.+.+|  ..++|+|||+|++|||++
T Consensus        17 ~~~~v~vy~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g--~~tvP~ifi~g~~igG~~   88 (113)
T 3rhb_A           17 TENTVVIYSKTW------CSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG--QHTVPNVFVCGKHIGGCT   88 (113)
T ss_dssp             HHSSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHS--CCSSCEEEETTEEEESHH
T ss_pred             hcCCEEEEECCC------ChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhC--CCCcCEEEECCEEEcCcH
Confidence            456799999996      99999999999999999999999874    677888988887  889999999999999999


Q ss_pred             HHHHHHHcCChhhhhccCCC
Q psy15946        176 AIERLNESGELRRILKPYKS  195 (251)
Q Consensus       176 ~l~~l~e~G~L~~~L~~~~~  195 (251)
                      ++.+|+++|+|.++|+.+..
T Consensus        89 ~~~~~~~~g~L~~~l~~~~~  108 (113)
T 3rhb_A           89 DTVKLNRKGDLELMLAEANG  108 (113)
T ss_dssp             HHHHHHHHTHHHHHHTC---
T ss_pred             HHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999987653

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.73  E-value=4.6e-18  Score=133.41  Aligned_cols=86  Identities=24%  Similarity=0.388  Sum_probs=78.9

Q ss_pred             cchheeeeeeecccccCCCcchHHH-HHHHHhcC---CceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKV-KQILRTHL---VKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~-k~lL~~~~---v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .+.+|+||++++      ||+|.++ +.+|++++   ++|+++||+.+   .+.+++|.+++|  ..++|+|||+|++||
T Consensus        35 ~~~~Vvvy~~~~------Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g--~~tVP~vfi~g~~ig  106 (129)
T 3ctg_A           35 GQKEVFVAAKTY------CPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISG--QKTVPNVYINGKHIG  106 (129)
T ss_dssp             HHSSEEEEECTT------CHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHS--CCSSCEEEETTEEEE
T ss_pred             cCCCEEEEECCC------CCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhC--CCCCCEEEECCEEEc
Confidence            356799999995      9999999 99999999   99999999876   467889999997  789999999999999


Q ss_pred             ChHHHHHHHHcCChhhhhccC
Q psy15946        173 DADAIERLNESGELRRILKPY  193 (251)
Q Consensus       173 G~d~l~~l~e~G~L~~~L~~~  193 (251)
                      |+|++.+|+++|+|.++|+.+
T Consensus       107 G~d~l~~l~~~G~L~~~L~~a  127 (129)
T 3ctg_A          107 GNSDLETLKKNGKLAEILKPV  127 (129)
T ss_dssp             SHHHHHHHHHTTHHHHHTTTT
T ss_pred             CHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999764

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.70  E-value=2.8e-17  Score=119.64  Aligned_cols=75  Identities=24%  Similarity=0.433  Sum_probs=67.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcC-----CCHHHHHHHHHHhCCCCC-----CCceEEE-CCeee
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF-----MSRETQQEFKERLGTDVI-----NVPQIFV-EGVHI  171 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~-----~~~~~~~el~~~~g~~~~-----~vP~vfi-~g~~i  171 (251)
                      +|+||+++...  .+|++|.+++++|++++++|+++||+     .+++.+++|.+++|  ..     ++|+||| ||++|
T Consensus         1 ~v~iY~~~~~~--~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g--~~~~~~~tvP~v~i~~g~~i   76 (87)
T 1aba_A            1 MFKVYGYDSNI--HKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLG--RDTQIGLTMPQVFAPDGSHI   76 (87)
T ss_dssp             CEEEEECCTTT--SCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHT--CSCCTTCCSCEEECTTSCEE
T ss_pred             CEEEEEeCCCC--CcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhC--CCCCCCCccCEEEEECCEEE
Confidence            48899999211  13999999999999999999999999     88999999999997  56     9999999 99999


Q ss_pred             CChHHHHHHH
Q psy15946        172 GDADAIERLN  181 (251)
Q Consensus       172 GG~d~l~~l~  181 (251)
                      ||+|++.+|+
T Consensus        77 gG~d~l~~~~   86 (87)
T 1aba_A           77 GGFDQLREYF   86 (87)
T ss_dssp             ESHHHHHHHT
T ss_pred             eCHHHHHHhc
Confidence            9999999886

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.69  E-value=1.7e-17  Score=128.03  Aligned_cols=86  Identities=27%  Similarity=0.426  Sum_probs=78.6

Q ss_pred             cchheeeeeeecccccCCCcchHHH-HHHHHhcC---CceeEEEcCCCH---HHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKV-KQILRTHL---VKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~-k~lL~~~~---v~~~e~dv~~~~---~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .+.+|++|++++      |++|.++ +.+|++.+   ++|.++||+.++   +.+++|.+.+|  ..++|+|||+|++||
T Consensus        23 ~~~~Vvvf~~~~------Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g--~~tvP~vfi~g~~ig   94 (118)
T 3c1r_A           23 AENEIFVASKTY------CPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEING--QRTVPNIYINGKHIG   94 (118)
T ss_dssp             HHSSEEEEECSS------CHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHS--CCSSCEEEETTEEEE
T ss_pred             ccCcEEEEEcCC------CcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhC--CCCcCEEEECCEEEE
Confidence            355799999996      9999999 99999999   999999998764   57889999997  789999999999999


Q ss_pred             ChHHHHHHHHcCChhhhhccC
Q psy15946        173 DADAIERLNESGELRRILKPY  193 (251)
Q Consensus       173 G~d~l~~l~e~G~L~~~L~~~  193 (251)
                      |+|++.+|+++|+|+++|+.+
T Consensus        95 G~d~l~~l~~~g~L~~~L~~~  115 (118)
T 3c1r_A           95 GNDDLQELRETGELEELLEPI  115 (118)
T ss_dssp             SHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHCCcHHHHHHHc
Confidence            999999999999999999763

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.67  E-value=1e-16  Score=118.58  Aligned_cols=68  Identities=19%  Similarity=0.358  Sum_probs=61.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-eccccccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGTWQE   98 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~gG~~~   98 (251)
                      ..|+|||++|      ||||.+||++|++++|+|+++||+.|+++++++.++.+ |..+||+|+| ||+.+.|++.
T Consensus         4 a~I~vYs~~~------Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~-G~~tVP~I~i~Dg~~l~~~~~   72 (92)
T 2lqo_A            4 AALTIYTTSW------CGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNG-GNRTVPTVKFADGSTLTNPSA   72 (92)
T ss_dssp             SCEEEEECTT------CSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSS-SSSCSCEEEETTSCEEESCCH
T ss_pred             CcEEEEcCCC------CHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcC-CCCEeCEEEEeCCEEEeCCCH
Confidence            4799999997      99999999999999999999999999999999998875 7899999999 4677777653

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.67  E-value=2e-16  Score=112.74  Aligned_cols=81  Identities=28%  Similarity=0.509  Sum_probs=76.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      +|++|++++      |++|.+++.+|++++++|+++|++.+++.++++.+.+|  ..++|++|++|+.|||++++.++++
T Consensus         2 ~i~~y~~~~------C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~--~~~vP~l~~~g~~i~g~~~i~~~~~   73 (82)
T 1fov_A            2 NVEIYTKET------CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVPQIFIDAQHIGGYDDLYALDA   73 (82)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHS--SCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             cEEEEECCC------ChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEeCHHHHHHHHH
Confidence            588999985      99999999999999999999999998888899998887  7899999999999999999999999


Q ss_pred             cCChhhhhc
Q psy15946        183 SGELRRILK  191 (251)
Q Consensus       183 ~G~L~~~L~  191 (251)
                      +|+|.++|+
T Consensus        74 ~g~l~~~l~   82 (82)
T 1fov_A           74 RGGLDPLLK   82 (82)
T ss_dssp             TTCSHHHHC
T ss_pred             CCCHHHHhC
Confidence            999999884

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.66  E-value=2.4e-16  Score=114.71  Aligned_cols=82  Identities=28%  Similarity=0.527  Sum_probs=76.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh-CCCCCCCceEEECCeeeCChHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL-GTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~-g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +.+|++|++++      |++|.+++.+|++.+++|+++|++  ++..+++.+.+ |  ..++|++|++|++|||++++.+
T Consensus         5 m~~v~~y~~~~------C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~--~~~vP~l~~~g~~i~g~~~i~~   74 (89)
T 2klx_A            5 MKEIILYTRPN------CPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANG--RNTFPQIFIGDYHVGGCDDLYA   74 (89)
T ss_dssp             CCCEEEESCSC------CTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHS--SCCSCEEEETTEECCSHHHHHH
T ss_pred             cceEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCC--CCCcCEEEECCEEEeChHHHHH
Confidence            56799999995      999999999999999999999998  77788898888 7  7899999999999999999999


Q ss_pred             HHHcCChhhhhcc
Q psy15946        180 LNESGELRRILKP  192 (251)
Q Consensus       180 l~e~G~L~~~L~~  192 (251)
                      ++++|+|.++|+.
T Consensus        75 ~~~~g~l~~~l~~   87 (89)
T 2klx_A           75 LENKGKLDSLLQD   87 (89)
T ss_dssp             HHHHTTHHHHHHH
T ss_pred             HHHcCcHHHHHhh
Confidence            9999999999975

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.65  E-value=4.3e-16  Score=113.89  Aligned_cols=83  Identities=29%  Similarity=0.540  Sum_probs=78.5

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|++|++++      |++|.+++.+|++++++|+++|++.+++.++++.+.++  ..++|++|++|++|||++++.++
T Consensus         5 m~~v~ly~~~~------C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~--~~~vP~l~~~g~~i~g~~~i~~~   76 (92)
T 2khp_A            5 MVDVIIYTRPG------CPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG--RNTFPQIFIGSVHVGGCDDLYAL   76 (92)
T ss_dssp             CCCEEEEECTT------CHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT--SSCCCEEEETTEEEESHHHHHHH
T ss_pred             cccEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC--CCCcCEEEECCEEEcCHHHHHHH
Confidence            56799999995      99999999999999999999999999999999999987  78999999999999999999999


Q ss_pred             HHcCChhhhhc
Q psy15946        181 NESGELRRILK  191 (251)
Q Consensus       181 ~e~G~L~~~L~  191 (251)
                      +++|+|+++|+
T Consensus        77 ~~~~~l~~~l~   87 (92)
T 2khp_A           77 EDEGKLDSLLK   87 (92)
T ss_dssp             HTTTCHHHHHH
T ss_pred             HHcCCHHHHHh
Confidence            99999999996

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.65  E-value=5.8e-17  Score=146.74  Aligned_cols=89  Identities=26%  Similarity=0.355  Sum_probs=79.6

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHH-HHHhcCCceeEEEc------CCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQ-ILRTHLVKFDDKDV------FMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~-lL~~~~v~~~e~dv------~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      ....+|+||++++      |++|.++++ +|++++|+|+++||      +.+++.+++|++++|  +.++|||||+|++|
T Consensus       258 I~~~~VvVYsk~~------CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG--~~TVPqVFI~Gk~I  329 (362)
T 2jad_A          258 IAENEIFVASKTY------CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEING--QRTVPNIYINGKHI  329 (362)
T ss_dssp             HHTCSEEEEECTT------CHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHC--CCSSCEEEETTEEE
T ss_pred             hccCCEEEEEcCC------CcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHC--CCCcCEEEECCEEE
Confidence            3577899999994      999999997 89999999987776      457889999999997  89999999999999


Q ss_pred             CChHHHHHHHHcCChhhhhccCCC
Q psy15946        172 GDADAIERLNESGELRRILKPYKS  195 (251)
Q Consensus       172 GG~d~l~~l~e~G~L~~~L~~~~~  195 (251)
                      ||+|+|.+|+++|+|.++|+.+..
T Consensus       330 GG~DdL~~L~~~GeL~~lL~~~~~  353 (362)
T 2jad_A          330 GGNDDLQELRETGELEELLEPILA  353 (362)
T ss_dssp             ESHHHHHHHHHSSHHHHHHHHHC-
T ss_pred             EChHHHHHhhhCChHHHHHHhCch
Confidence            999999999999999999987553

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.64  E-value=3.6e-16  Score=116.96  Aligned_cols=86  Identities=24%  Similarity=0.432  Sum_probs=78.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCc---eeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGD  173 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~---~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG  173 (251)
                      ...+|++|++++      |++|.+++.+|++++++   |.++|++.+   ++.+++|.+.+|  ..++|++|++|++|||
T Consensus        10 ~~~~v~~f~~~~------C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g--~~~vP~i~~~g~~i~g   81 (105)
T 1kte_A           10 QPGKVVVFIKPT------CPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG--ARTVPRVFIGKECIGG   81 (105)
T ss_dssp             CTTCEEEEECSS------CHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS--CCCSCEEEETTEEEES
T ss_pred             ccCCEEEEEcCC------CHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhC--CCCcCeEEECCEEEec
Confidence            345799999996      99999999999999999   999999887   577888999987  7899999999999999


Q ss_pred             hHHHHHHHHcCChhhhhccC
Q psy15946        174 ADAIERLNESGELRRILKPY  193 (251)
Q Consensus       174 ~d~l~~l~e~G~L~~~L~~~  193 (251)
                      ++++..++++|+|+++|+.+
T Consensus        82 ~~~~~~~~~~g~L~~~l~~~  101 (105)
T 1kte_A           82 CTDLESMHKRGELLTRLQQV  101 (105)
T ss_dssp             HHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHCCcHHHHHHHc
Confidence            99999999999999999764

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.63  E-value=4.4e-16  Score=114.79  Aligned_cols=71  Identities=18%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCeEEEEeecCCCCCCCCchH------HHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRC------LKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C------~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      |.+|+||++++      ||+|      .+|+++|++++|+|+++||+.+++.+++|++.+|.+..++|+|||+|+++||+
T Consensus         1 M~~v~ly~~~~------C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~   74 (93)
T 1t1v_A            1 MSGLRVYSTSV------TGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDY   74 (93)
T ss_dssp             CCCEEEEECSS------CSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEH
T ss_pred             CCCEEEEEcCC------CCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCH
Confidence            56899999997      9999      99999999999999999999999999999999853267999999999999998


Q ss_pred             ccc
Q psy15946         97 QEK   99 (251)
Q Consensus        97 ~~~   99 (251)
                      ++.
T Consensus        75 d~l   77 (93)
T 1t1v_A           75 ELF   77 (93)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.63  E-value=7.6e-16  Score=117.62  Aligned_cols=87  Identities=21%  Similarity=0.321  Sum_probs=80.0

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCc---eeEEEcCCCH---HHHHHHHHHhCCCCCCCceEEECCeeeCC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIGD  173 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~---~~e~dv~~~~---~~~~el~~~~g~~~~~vP~vfi~g~~iGG  173 (251)
                      ....|++|++++      |++|.+++.+|++.+++   |.++||+.++   +.+++|.+.+|  ..++|++|++|++|||
T Consensus        17 ~~~~vv~f~~~~------Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g--~~~vP~v~i~g~~igg   88 (114)
T 2hze_A           17 ANNKVTIFVKYT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG--GKTVPRIFFGKTSIGG   88 (114)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHS--CCSSCEEEETTEEEES
T ss_pred             ccCCEEEEEeCC------ChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhC--CCCcCEEEECCEEEeC
Confidence            456799999996      99999999999999999   9999998875   77889999987  8899999999999999


Q ss_pred             hHHHHHHHHcCChhhhhccCC
Q psy15946        174 ADAIERLNESGELRRILKPYK  194 (251)
Q Consensus       174 ~d~l~~l~e~G~L~~~L~~~~  194 (251)
                      ++++..++++|+|.++|+..+
T Consensus        89 ~~~~~~~~~~~~L~~~L~~~g  109 (114)
T 2hze_A           89 YSDLLEIDNMDALGDILSSIG  109 (114)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT
T ss_pred             cHHHHHHHHCChHHHHHHHcC
Confidence            999999999999999998754

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.63  E-value=5.9e-16  Score=119.49  Aligned_cols=94  Identities=20%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCC-ccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV-KFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE  100 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v-~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~  100 (251)
                      ..++||||++++. .--.||||.+|+++|+++++ +|+++||+.+++.+++|++++  +++++|||||+|+++||+++..
T Consensus        18 ~~~~VvvF~Kgt~-~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~s--g~~TvPqIFI~g~~IGG~Ddl~   94 (118)
T 2wul_A           18 KKDKVVVFLKGTP-EQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS--NWPTIPQVYLNGEFVGGCDILL   94 (118)
T ss_dssp             HHSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHH--TCCSSCEEEETTEEEECHHHHH
T ss_pred             hcCCEEEEEcCCC-CCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhc--cCCCCCeEeECCEEECCHHHHH
Confidence            5789999998510 00029999999999999999 699999999999999999998  6899999999999999988643


Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCc
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK  134 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~  134 (251)
                      .                ...-.+...+|++.||.
T Consensus        95 ~----------------l~~~GeL~~lL~~~Gi~  112 (118)
T 2wul_A           95 Q----------------MHQNGDLVEELKKLGIH  112 (118)
T ss_dssp             H----------------HHHHTHHHHHHHHTTCC
T ss_pred             H----------------HHHCCCHHHHHHHcCCc
Confidence            2                22234777888888874

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.61  E-value=8.9e-16  Score=117.27  Aligned_cols=71  Identities=23%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             cCCCeEEEEee-----cCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         21 KEAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        21 ~~~~~vvvyt~-----~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ...++|+||++     ++      ||+|.+|+++|++++++|+++||+.+++.++++++.+  |+.++|+|||+|+++||
T Consensus        13 i~~~~Vvlf~kg~~~~~~------Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~--g~~tvP~ifi~g~~iGG   84 (111)
T 3zyw_A           13 THAAPCMLFMKGTPQEPR------CGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYS--SWPTYPQLYVSGELIGG   84 (111)
T ss_dssp             HTSSSEEEEESBCSSSBS------SHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH--TCCSSCEEEETTEEEEC
T ss_pred             HhcCCEEEEEecCCCCCc------chhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHH--CCCCCCEEEECCEEEec
Confidence            36789999999     86      9999999999999999999999999999999999988  68899999999999999


Q ss_pred             cccc
Q psy15946         96 WQEK   99 (251)
Q Consensus        96 ~~~~   99 (251)
                      +++.
T Consensus        85 ~d~l   88 (111)
T 3zyw_A           85 LDII   88 (111)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.7e-15  Score=118.55  Aligned_cols=86  Identities=24%  Similarity=0.414  Sum_probs=79.5

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      ..+|++|++++      |++|.+++.+|++++++|.++||+.+   ++.+++|.+.+|  ..++|+||++|++|||++++
T Consensus        26 ~~~vvvf~~~~------Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g--~~~vP~l~i~G~~igg~~~l   97 (130)
T 2cq9_A           26 DNCVVIFSKTS------CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG--ERTVPRIFVNGTFIGGATDT   97 (130)
T ss_dssp             HSSEEEEECSS------CSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHS--SCCSSEEEETTEEEEEHHHH
T ss_pred             CCcEEEEEcCC------ChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhC--CCCcCEEEECCEEEcChHHH
Confidence            45799999996      99999999999999999999999887   778889999987  88999999999999999999


Q ss_pred             HHHHHcCChhhhhccCC
Q psy15946        178 ERLNESGELRRILKPYK  194 (251)
Q Consensus       178 ~~l~e~G~L~~~L~~~~  194 (251)
                      ..+++.|+|.++|+.+.
T Consensus        98 ~~~~~~~~L~~~L~~~g  114 (130)
T 2cq9_A           98 HRLHKEGKLLPLVHQCY  114 (130)
T ss_dssp             HHHHHHTSSHHHHHHHS
T ss_pred             HHHHHcCcHHHHHHHcC
Confidence            99999999999998754

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.59  E-value=3.7e-15  Score=110.21  Aligned_cols=68  Identities=19%  Similarity=0.397  Sum_probs=60.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDAD  175 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d  175 (251)
                      ..+|+||++++      ||+|.++|++|+++||+|+++||+.|++.++++.++++ +..+||+||| ||..++|++
T Consensus         3 ta~I~vYs~~~------Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~-G~~tVP~I~i~Dg~~l~~~~   71 (92)
T 2lqo_A            3 TAALTIYTTSW------CGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNG-GNRTVPTVKFADGSTLTNPS   71 (92)
T ss_dssp             SSCEEEEECTT------CSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSS-SSSCSCEEEETTSCEEESCC
T ss_pred             CCcEEEEcCCC------CHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcC-CCCEeCEEEEeCCEEEeCCC
Confidence            35799999996      99999999999999999999999999999999999974 3789999999 578777743

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.59  E-value=1.6e-15  Score=115.25  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=65.8

Q ss_pred             cCCCeEEEEeec-----CCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         21 KEAGKIVMYSTT-----MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        21 ~~~~~vvvyt~~-----~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ..+++|+||+++     +      ||+|.+|+++|++++++|+++||+.+++.++++++++  |..++|++||+|+++||
T Consensus        15 i~~~~Vvvy~k~t~~~p~------Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~--g~~tvP~ifi~g~~iGG   86 (109)
T 3ipz_A           15 VNSEKVVLFMKGTRDFPM------CGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS--NWPTFPQLYIGGEFFGG   86 (109)
T ss_dssp             HTSSSEEEEESBCSSSBS------SHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH--TCSSSCEEEETTEEEEC
T ss_pred             HccCCEEEEEecCCCCCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH--CCCCCCeEEECCEEEeC
Confidence            467899999996     6      9999999999999999999999999999999999988  68999999999999999


Q ss_pred             cccc
Q psy15946         96 WQEK   99 (251)
Q Consensus        96 ~~~~   99 (251)
                      +++.
T Consensus        87 ~d~l   90 (109)
T 3ipz_A           87 CDIT   90 (109)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8854

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.59  E-value=1.9e-15  Score=113.08  Aligned_cols=72  Identities=22%  Similarity=0.409  Sum_probs=65.8

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .+.++|+||+++|      ||+|.+|+++|++++++|+++||+.+++.+++++++++ +..++|++||+|++++|+++.
T Consensus        13 ~~~~~v~vy~~~~------Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~-g~~~vP~ifi~g~~igG~d~l   84 (99)
T 3qmx_A           13 AVSAKIEIYTWST------CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARAN-GKRSLPQIFIDDQHIGGCDDI   84 (99)
T ss_dssp             CCCCCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTT-TCCCSCEEEETTEEEESHHHH
T ss_pred             cCCCCEEEEEcCC------ChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhC-CCCCCCEEEECCEEEeChHHH
Confidence            3567999999997      99999999999999999999999999999999998873 578999999999999998753

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.2e-15  Score=116.79  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             cCCCeEEEEeec-----CCCCCCCCchHHHHHHHHHHcCCc---cceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         21 KEAGKIVMYSTT-----MGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        21 ~~~~~vvvyt~~-----~~~~~~~C~~C~~~k~~L~~~~v~---~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      ...++|+||+++     |      ||||.+|+++|++++++   |+++||+.+++.+++|++++  |+.++|+|||+|++
T Consensus        13 i~~~~Vvvfsk~t~~~p~------Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s--g~~tvP~vfI~g~~   84 (121)
T 3gx8_A           13 IESAPVVLFMKGTPEFPK------CGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS--EWPTIPQLYVNKEF   84 (121)
T ss_dssp             HHSCSEEEEESBCSSSBC------TTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH--TCCSSCEEEETTEE
T ss_pred             hccCCEEEEEeccCCCCC------CccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh--CCCCCCeEEECCEE
Confidence            357899999996     7      99999999999999999   99999999999999999988  68999999999999


Q ss_pred             ccccccccchheeeeeeecccccCCCcchHHHHHHHHhcCCcee
Q psy15946         93 IGTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFD  136 (251)
Q Consensus        93 ~gG~~~~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~  136 (251)
                      +||+++...                ...-.....+|+..|+-..
T Consensus        85 iGG~d~l~~----------------l~~~G~L~~~L~~~g~~~~  112 (121)
T 3gx8_A           85 IGGCDVITS----------------MARSGELADLLEEAQALVP  112 (121)
T ss_dssp             EESHHHHHH----------------HHHHTHHHHHHHHTTCBCC
T ss_pred             EecHHHHHH----------------HHHcCChHHHHHHcCCCCC
Confidence            999886432                1223477778888877544

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.59  E-value=2.9e-15  Score=119.84  Aligned_cols=86  Identities=24%  Similarity=0.414  Sum_probs=79.5

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      ..+|++|++++      |++|.+++.+|++++++|.++||+.+   ++.+++|.+.+|  ..++|+||++|++|||++++
T Consensus        48 ~~~Vvvf~~~~------Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g--~~tvP~ifi~G~~igG~d~l  119 (146)
T 2ht9_A           48 DNCVVIFSKTS------CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG--ERTVPRIFVNGTFIGGATDT  119 (146)
T ss_dssp             HCSEEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHS--CCCSCEEEETTEEEESHHHH
T ss_pred             CCCEEEEECCC------ChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhC--CCCcCeEEECCEEEeCchHH
Confidence            45799999996      99999999999999999999999877   778889999987  88999999999999999999


Q ss_pred             HHHHHcCChhhhhccCC
Q psy15946        178 ERLNESGELRRILKPYK  194 (251)
Q Consensus       178 ~~l~e~G~L~~~L~~~~  194 (251)
                      ..++++|+|.++|+.++
T Consensus       120 ~~l~~~g~L~~~L~~~g  136 (146)
T 2ht9_A          120 HRLHKEGKLLPLVHQCY  136 (146)
T ss_dssp             HHHHHTTCHHHHHHHTT
T ss_pred             HHHHHcChHHHHHHHcC
Confidence            99999999999998764

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.57  E-value=3e-15  Score=115.80  Aligned_cols=67  Identities=24%  Similarity=0.341  Sum_probs=61.7

Q ss_pred             EEEEeecCCCCCCCCchH------HHHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRC------LKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C------~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~~~   93 (251)
                      |+|||++.      ||+|      .+||++|++++|+|+|+||+.+++.+++|.+.++      .|..++|||||+|+++
T Consensus         2 V~vYtt~~------c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i   75 (121)
T 1u6t_A            2 IRVYIASS------SGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR   75 (121)
T ss_dssp             EEEEECTT------CSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred             EEEEecCC------CCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence            89999996      9998      7999999999999999999999999999999883      1467999999999999


Q ss_pred             ccccc
Q psy15946         94 GTWQE   98 (251)
Q Consensus        94 gG~~~   98 (251)
                      |||++
T Consensus        76 GG~Dd   80 (121)
T 1u6t_A           76 GDYDA   80 (121)
T ss_dssp             EEHHH
T ss_pred             echHH
Confidence            99884

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.56  E-value=4.9e-15  Score=107.63  Aligned_cols=67  Identities=24%  Similarity=0.461  Sum_probs=61.9

Q ss_pred             eEEEEeec----CCCCCCCCchHHHHHHHHHHcCCccceeecc-----CCHHHHHHHHHHhCCCCC-----CCCceee-e
Q psy15946         25 KIVMYSTT----MGIVRDTYHRCLKVKQILRTHLVKFDDKDVF-----MSRETQQEFKERLGTDVI-----NVPQIFV-E   89 (251)
Q Consensus        25 ~vvvyt~~----~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~-----~d~~~~~el~~~~g~g~~-----~vP~i~i-~   89 (251)
                      +|+||+++    +      ||+|.+|+++|++++++|+++||+     .+++.+++|++++|  ..     ++|++|| +
T Consensus         1 ~v~iY~~~~~~~~------Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g--~~~~~~~tvP~v~i~~   72 (87)
T 1aba_A            1 MFKVYGYDSNIHK------CGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLG--RDTQIGLTMPQVFAPD   72 (87)
T ss_dssp             CEEEEECCTTTSC------CHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHT--CSCCTTCCSCEEECTT
T ss_pred             CEEEEEeCCCCCc------CccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhC--CCCCCCCccCEEEEEC
Confidence            48999999    9      999999999999999999999999     88999999999984  55     8999999 9


Q ss_pred             cccccccccc
Q psy15946         90 GVHIGTWQEK   99 (251)
Q Consensus        90 g~~~gG~~~~   99 (251)
                      |++++|+++.
T Consensus        73 g~~igG~d~l   82 (87)
T 1aba_A           73 GSHIGGFDQL   82 (87)
T ss_dssp             SCEEESHHHH
T ss_pred             CEEEeCHHHH
Confidence            9999998854

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.52  E-value=1.6e-14  Score=109.50  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=64.1

Q ss_pred             CCCeEEEEee-----cCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         22 EAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        22 ~~~~vvvyt~-----~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      .+++|+||++     +|      ||+|.+|+++|++++++|+++||+.+++.++++.+++  |..++|+|||+|++++|+
T Consensus        13 ~~~~vvvy~~g~~~~~~------Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~--g~~~vP~ifi~g~~igG~   84 (109)
T 1wik_A           13 NKASVMLFMKGNKQEAK------CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS--NWPTYPQLYVRGDLVGGL   84 (109)
T ss_dssp             TTSSEEEEESSTTTCCC------SSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH--SCCSSCEEECSSSEEECH
T ss_pred             ccCCEEEEEecCCCCCC------CchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh--CCCCCCEEEECCEEEcCH
Confidence            4678999999     86      9999999999999999999999999999999999988  578999999999999998


Q ss_pred             cc
Q psy15946         97 QE   98 (251)
Q Consensus        97 ~~   98 (251)
                      ++
T Consensus        85 d~   86 (109)
T 1wik_A           85 DI   86 (109)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=110.85  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             CeEEEEeecCCCCCCCCchHH------HHHHHHHHcCCccceeeccCCHHHHHHHHHHhC------CCCCCCCceeeecc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCL------KVKQILRTHLVKFDDKDVFMSRETQQEFKERLG------TDVINVPQIFVEGV   91 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~------~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g------~g~~~vP~i~i~g~   91 (251)
                      .+|+||++++      ||+|.      +|+++|++++|+|+++||+.+++.+++|+++++      +|+.++|+|||+|+
T Consensus         8 m~V~vy~~~~------C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~   81 (111)
T 2ct6_A            8 MVIRVFIASS------SGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR   81 (111)
T ss_dssp             CCEEEEECSS------CSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE
T ss_pred             cEEEEEEcCC------CCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCE
Confidence            3799999997      99999      899999999999999999999999999998862      26789999999999


Q ss_pred             ccccccc
Q psy15946         92 HIGTWQE   98 (251)
Q Consensus        92 ~~gG~~~   98 (251)
                      +++|+++
T Consensus        82 ~iGG~d~   88 (111)
T 2ct6_A           82 YCGDYDS   88 (111)
T ss_dssp             EEEEHHH
T ss_pred             EEeCHHH
Confidence            9999885

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.52  E-value=2.1e-14  Score=103.59  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=64.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH--HHHHHHHHhCCCC-----CCCceEEECCeeeCChH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE--TQQEFKERLGTDV-----INVPQIFVEGVHIGDAD  175 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~--~~~el~~~~g~~~-----~~vP~vfi~g~~iGG~d  175 (251)
                      +|++|++++      |++|.+++.+|++++++|++++++.+.+  ..++|.+++|  .     .++|+|||+|++|||++
T Consensus         5 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g--~~~~~~~~vP~i~i~g~~i~g~~   76 (89)
T 3msz_A            5 KVKIYTRNG------CPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSG--KVIFPISTVPQIFIDDEHIGGFT   76 (89)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTT--CCSSCCCSSCEEEETTEEEESHH
T ss_pred             EEEEEEcCC------ChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhC--CCCCCCCccCEEEECCEEEeChH
Confidence            589999995      9999999999999999999998876544  6678888887  5     89999999999999999


Q ss_pred             HHHHHHHc
Q psy15946        176 AIERLNES  183 (251)
Q Consensus       176 ~l~~l~e~  183 (251)
                      ++.+++++
T Consensus        77 ~i~~~~~~   84 (89)
T 3msz_A           77 ELKANADK   84 (89)
T ss_dssp             HHHHTHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.3e-14  Score=113.54  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=61.7

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---CCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+|++|+|||++|      ||+|.+||++|+++   +++|+++||+.+   ++.++++++.+  |+.++|+|||+|+++|
T Consensus        11 i~~~~Vvvysk~~------Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~--G~~tVP~IfI~G~~IG   82 (127)
T 3l4n_A           11 LDLSPIIIFSKST------CSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVT--GRGTVPNLLVNGVSRG   82 (127)
T ss_dssp             HTSCSEEEEECTT------CHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHH--SCCSSCEEEETTEECC
T ss_pred             HccCCEEEEEcCC------CccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHc--CCCCcceEEECCEEEc
Confidence            3678999999997      99999999999995   789999999875   35566677777  6899999999999999


Q ss_pred             cccccc
Q psy15946         95 TWQEKE  100 (251)
Q Consensus        95 G~~~~~  100 (251)
                      |+++..
T Consensus        83 G~ddl~   88 (127)
T 3l4n_A           83 GNEEIK   88 (127)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            988543

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.51  E-value=1.3e-14  Score=114.54  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=64.8

Q ss_pred             CCCeEEEEee-----cCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         22 EAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        22 ~~~~vvvyt~-----~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      .+++|+||++     +|      ||+|.+|+++|++++++|+++||+.+++.++++++++  |+.++|+|||+|++++|+
T Consensus        33 ~~~~Vvvy~ks~~~~~~------Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~--G~~tvP~VfI~G~~iGG~  104 (135)
T 2wci_A           33 AENPILLYMKGSPKLPS------CGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA--NWPTFPQLWVDGELVGGC  104 (135)
T ss_dssp             HHCSEEEEESBCSSSBS------SHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH--TCCSSCEEEETTEEEESH
T ss_pred             ccCCEEEEEEecCCCCC------CccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH--CCCCcCEEEECCEEEECh
Confidence            4679999999     65      9999999999999999999999999999999999988  588999999999999998


Q ss_pred             ccc
Q psy15946         97 QEK   99 (251)
Q Consensus        97 ~~~   99 (251)
                      ++.
T Consensus       105 d~l  107 (135)
T 2wci_A          105 DIV  107 (135)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.49  E-value=4.1e-14  Score=106.34  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=64.2

Q ss_pred             CCCeEEEEee-----cCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         22 EAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        22 ~~~~vvvyt~-----~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      .+++|+||++     +|      ||+|++++.+|++++++|.++||+.+++.++++.+++  |..++|++|++|++++|+
T Consensus        15 ~~~~vvvf~~g~~~~~~------C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~--g~~~vP~v~i~g~~igg~   86 (105)
T 2yan_A           15 NKASVMLFMKGNKQEAK------CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS--NWPTYPQLYVKGELVGGL   86 (105)
T ss_dssp             TSSSEEEEESBCSSSBC------TTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH--TCCSSCEEEETTEEEECH
T ss_pred             ccCCEEEEEecCCCCCC------CccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH--CCCCCCeEEECCEEEeCh
Confidence            4568999999     86      9999999999999999999999999999999999888  578999999999999998


Q ss_pred             ccc
Q psy15946         97 QEK   99 (251)
Q Consensus        97 ~~~   99 (251)
                      ++.
T Consensus        87 d~~   89 (105)
T 2yan_A           87 DIV   89 (105)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            743

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.47  E-value=3.5e-14  Score=108.54  Aligned_cols=71  Identities=23%  Similarity=0.367  Sum_probs=61.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--C-HHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--S-RETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d-~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      ++++|+||+++|      ||+|.+|+.+|++++++|+++||+.  + ++.++++.+.+  |..++|++||+|+++||+++
T Consensus        15 ~~~~v~vy~~~~------Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~--g~~tvP~vfi~g~~igG~d~   86 (114)
T 3h8q_A           15 ERSRVVIFSKSY------CPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEIT--NQKTVPNIFVNKVHVGGCDQ   86 (114)
T ss_dssp             HHCSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHH--SCCSSCEEEETTEEEESHHH
T ss_pred             ccCCEEEEEcCC------CCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHh--CCCccCEEEECCEEEeCHHH
Confidence            467899999997      9999999999999999999999986  3 34456677777  68999999999999999885


Q ss_pred             cc
Q psy15946         99 KE  100 (251)
Q Consensus        99 ~~  100 (251)
                      ..
T Consensus        87 l~   88 (114)
T 3h8q_A           87 TF   88 (114)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.46  E-value=6.2e-14  Score=106.49  Aligned_cols=70  Identities=24%  Similarity=0.335  Sum_probs=61.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC----HHHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS----RETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d----~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      .+++|++|+++|      ||+|++++.+|++++++|+++||+.+    ++.++++.+.+  |..++|++|++|++++|++
T Consensus        17 ~~~~v~vy~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~--g~~tvP~ifi~g~~igG~~   88 (113)
T 3rhb_A           17 TENTVVIYSKTW------CSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT--GQHTVPNVFVCGKHIGGCT   88 (113)
T ss_dssp             HHSSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHH--SCCSSCEEEETTEEEESHH
T ss_pred             hcCCEEEEECCC------ChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHh--CCCCcCEEEECCEEEcCcH
Confidence            456799999998      99999999999999999999999874    56677787777  5789999999999999987


Q ss_pred             cc
Q psy15946         98 EK   99 (251)
Q Consensus        98 ~~   99 (251)
                      +.
T Consensus        89 ~~   90 (113)
T 3rhb_A           89 DT   90 (113)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.43  E-value=1.6e-12  Score=111.06  Aligned_cols=72  Identities=25%  Similarity=0.424  Sum_probs=64.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ...|++|+++      .|++|.+++++|+.++++|+++||..+++ +++|.+.+|  ..++|+|||+|++|||++++.++
T Consensus       169 ~~~i~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g--~~~vP~~~~~g~~i~g~~~i~~~  239 (241)
T 1nm3_A          169 QESISIFTKP------GCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSG--RTTVPQVFIGGKHIGGSDDLEKY  239 (241)
T ss_dssp             CCCEEEEECS------SCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTC--CSSSCEEEETTEEEESHHHHHHC
T ss_pred             cceEEEEECC------CChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhC--CCCcCEEEECCEEEECHHHHHHH
Confidence            5579999998      49999999999999999999999988744 588999887  78999999999999999999876


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus       240 l  240 (241)
T 1nm3_A          240 F  240 (241)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.38  E-value=3.2e-13  Score=98.44  Aligned_cols=72  Identities=14%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC-----CHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-----SRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~-----d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ..|.+|+||+++|      ||+|++++.+|++++++|+++||+.     +++..+++.+.+  +..++|+++++|+.++|
T Consensus         9 ~~M~~v~ly~~~~------Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~--g~~~vP~l~~~g~~i~G   80 (92)
T 3ic4_A            9 QGMAEVLMYGLST------CPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSIS--GSYSVPVVVKGDKHVLG   80 (92)
T ss_dssp             TTCSSSEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHH--SSSCSCEEEETTEEEES
T ss_pred             CCCceEEEEECCC------ChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhc--CCCCcCEEEECCEEEeC
Confidence            3467899999997      9999999999999999999999984     233457887777  57799999999999999


Q ss_pred             ccccc
Q psy15946         96 WQEKE  100 (251)
Q Consensus        96 ~~~~~  100 (251)
                      +++.+
T Consensus        81 ~~~~~   85 (92)
T 3ic4_A           81 YNEEK   85 (92)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            87654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.38  E-value=2.1e-13  Score=97.50  Aligned_cols=76  Identities=21%  Similarity=0.409  Sum_probs=65.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +|++|++++      |++|.+++.+|++     .+++|.++|++.+++..++|.+.+|.+..++|+||++|+.|||++++
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l   75 (85)
T 1ego_A            2 QTVIFGRSG------CPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             EEEEECCTT------STHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             EEEEEeCCC------CCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHH
Confidence            588999996      9999999999998     78999999997665555678888763368999999999999999999


Q ss_pred             HHHHHcC
Q psy15946        178 ERLNESG  184 (251)
Q Consensus       178 ~~l~e~G  184 (251)
                      .++.+++
T Consensus        76 ~~~~~~~   82 (85)
T 1ego_A           76 AAWVKEN   82 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998876

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.36  E-value=4.5e-13  Score=104.78  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=62.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHH-HHHHHHcC---CccceeeccCCH---HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKV-KQILRTHL---VKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~-k~~L~~~~---v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|+||+++|      ||+|.++ +.+|++++   ++|+++||+.++   +.++++.+.+  |..++|++||+|++++
T Consensus        35 ~~~~Vvvy~~~~------Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~--g~~tVP~vfi~g~~ig  106 (129)
T 3ctg_A           35 GQKEVFVAAKTY------CPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS--GQKTVPNVYINGKHIG  106 (129)
T ss_dssp             HHSSEEEEECTT------CHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHH--SCCSSCEEEETTEEEE
T ss_pred             cCCCEEEEECCC------CCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHh--CCCCCCEEEECCEEEc
Confidence            467899999997      9999999 99999999   999999998874   5678899888  5789999999999999


Q ss_pred             ccccc
Q psy15946         95 TWQEK   99 (251)
Q Consensus        95 G~~~~   99 (251)
                      |+++.
T Consensus       107 G~d~l  111 (129)
T 3ctg_A          107 GNSDL  111 (129)
T ss_dssp             SHHHH
T ss_pred             CHHHH
Confidence            98753

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.36  E-value=1.2e-12  Score=95.40  Aligned_cols=68  Identities=25%  Similarity=0.471  Sum_probs=62.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      |++|++|+++|      ||+|++++.+|++++++|+++||+.+++..+++.+.+  +..++|+++++|+.++|+++
T Consensus         5 m~~v~ly~~~~------C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~--~~~~vP~l~~~g~~i~g~~~   72 (92)
T 2khp_A            5 MVDVIIYTRPG------CPYCARAKALLARKGAEFNEIDASATPELRAEMQERS--GRNTFPQIFIGSVHVGGCDD   72 (92)
T ss_dssp             CCCEEEEECTT------CHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHH--TSSCCCEEEETTEEEESHHH
T ss_pred             cccEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEcCHHH
Confidence            56899999997      9999999999999999999999999999889999888  57889999999999998764

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.36  E-value=8e-13  Score=98.88  Aligned_cols=73  Identities=25%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC-HHHHHH----HHHHhCCCCCCCCceeeec-ccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS-RETQQE----FKERLGTDVINVPQIFVEG-VHIGT   95 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d-~~~~~e----l~~~~g~g~~~vP~i~i~g-~~~gG   95 (251)
                      +.++|+||+++|      ||+|++++.+|++++++|+++||+.+ ++..++    +++..  +..++|+++++| ++++|
T Consensus        20 ~~~~v~ly~~~~------Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~--g~~~vP~l~i~~~~~igg   91 (103)
T 3nzn_A           20 DRGKVIMYGLST------CVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFN--PSVSFPTTIINDEKAIVG   91 (103)
T ss_dssp             CCSCEEEEECSS------CHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHC--TTCCSCEEEETTTEEEES
T ss_pred             CCCeEEEEcCCC------CchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhC--CCCccCEEEECCCEEEEc
Confidence            457899999997      99999999999999999999999873 443333    44444  689999999999 99999


Q ss_pred             cccccch
Q psy15946         96 WQEKEAG  102 (251)
Q Consensus        96 ~~~~~~~  102 (251)
                      +++.+..
T Consensus        92 ~~~~~l~   98 (103)
T 3nzn_A           92 FKEKEIR   98 (103)
T ss_dssp             CCHHHHH
T ss_pred             CCHHHHH
Confidence            9876543

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.35  E-value=8.9e-13  Score=94.87  Aligned_cols=69  Identities=25%  Similarity=0.403  Sum_probs=58.1

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH--HHHHHHHHhCC---CCCCCCceeeecccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE--TQQEFKERLGT---DVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~--~~~el~~~~g~---g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +|+||+++|      ||+|++++.+|++++++|++++|+.+.+  .++++.+++|.   +..++|+++++|++++|+++.
T Consensus         5 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i   78 (89)
T 3msz_A            5 KVKIYTRNG------CPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTEL   78 (89)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHH
T ss_pred             EEEEEEcCC------ChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHH
Confidence            699999997      9999999999999999999987766544  66788887742   228999999999999998754

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.33  E-value=1.6e-12  Score=92.21  Aligned_cols=66  Identities=24%  Similarity=0.491  Sum_probs=60.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      +|++|+++|      ||+|++++.+|++++++|+++||+.+++..+++.+.+  +..++|+++++|+.++|++.
T Consensus         2 ~i~~y~~~~------C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~--~~~~vP~l~~~g~~i~g~~~   67 (82)
T 1fov_A            2 NVEIYTKET------CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS--GRTTVPQIFIDAQHIGGYDD   67 (82)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHH--SSCCSCEEEETTEEEESHHH
T ss_pred             cEEEEECCC------ChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHh--CCCCcCEEEECCEEEeCHHH
Confidence            689999997      9999999999999999999999999888888998887  57899999999999988753

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.33  E-value=1.6e-12  Score=97.22  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=57.9

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-CHHH----HHHHHHHhCCCCCCCceEEECC-eeeCC
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SRET----QQEFKERLGTDVINVPQIFVEG-VHIGD  173 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~~~~----~~el~~~~g~~~~~vP~vfi~g-~~iGG  173 (251)
                      ..++|++|++++      ||+|.+++.+|++++++|+++||+. +.+.    .++|.+..|  ..++|+|||+| ++|||
T Consensus        20 ~~~~v~ly~~~~------Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g--~~~vP~l~i~~~~~igg   91 (103)
T 3nzn_A           20 DRGKVIMYGLST------CVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNP--SVSFPTTIINDEKAIVG   91 (103)
T ss_dssp             CCSCEEEEECSS------CHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCT--TCCSCEEEETTTEEEES
T ss_pred             CCCeEEEEcCCC------CchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCC--CCccCEEEECCCEEEEc
Confidence            456799999996      9999999999999999999999986 3433    344455555  89999999999 99999


Q ss_pred             hHH
Q psy15946        174 ADA  176 (251)
Q Consensus       174 ~d~  176 (251)
                      +++
T Consensus        92 ~~~   94 (103)
T 3nzn_A           92 FKE   94 (103)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            885

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.33  E-value=1.5e-12  Score=125.12  Aligned_cols=85  Identities=25%  Similarity=0.411  Sum_probs=78.6

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC---HHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~---~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      .+.+|+||++++      ||+|.+++++|++++++|+++|++.+   ++++++|++++|  ..++|+||++|++|||+++
T Consensus        16 ~~~~v~vy~~~~------Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g--~~tvP~v~i~g~~igG~~~   87 (598)
T 2x8g_A           16 DSAAVILFSKTT------CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK--IETVPQMFVRGKFIGDSQT   87 (598)
T ss_dssp             HHCSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHS--CCCSCEEEETTEEEECHHH
T ss_pred             ccCCEEEEECCC------ChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhC--CceeCEEEECCEEEEeeeh
Confidence            456899999995      99999999999999999999999865   778899998887  8999999999999999999


Q ss_pred             HHHHHHcCChhhhhcc
Q psy15946        177 IERLNESGELRRILKP  192 (251)
Q Consensus       177 l~~l~e~G~L~~~L~~  192 (251)
                      +.++++.|+|+++|..
T Consensus        88 l~~~~~~g~L~~~l~~  103 (598)
T 2x8g_A           88 VLKYYSNDELAGIVNE  103 (598)
T ss_dssp             HHHHHHTTCHHHHHHC
T ss_pred             hhhhhhcCcchhhccc
Confidence            9999999999999964

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.32  E-value=1.2e-12  Score=100.65  Aligned_cols=70  Identities=20%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHH-HHHHHHcC---CccceeeccCCH---HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKV-KQILRTHL---VKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~-k~~L~~~~---v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|++|+++|      ||+|.++ +.+|++++   ++|+++||+.++   +.++++.+.+  |..++|++|++|+.++
T Consensus        23 ~~~~Vvvf~~~~------Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~--g~~tvP~vfi~g~~ig   94 (118)
T 3c1r_A           23 AENEIFVASKTY------CPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN--GQRTVPNIYINGKHIG   94 (118)
T ss_dssp             HHSSEEEEECSS------CHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHH--SCCSSCEEEETTEEEE
T ss_pred             ccCcEEEEEcCC------CcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHh--CCCCcCEEEECCEEEE
Confidence            456899999998      9999999 99999999   999999999875   4678898888  5789999999999999


Q ss_pred             ccccc
Q psy15946         95 TWQEK   99 (251)
Q Consensus        95 G~~~~   99 (251)
                      |+++.
T Consensus        95 G~d~l   99 (118)
T 3c1r_A           95 GNDDL   99 (118)
T ss_dssp             SHHHH
T ss_pred             cHHHH
Confidence            98753

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.32  E-value=2.5e-12  Score=95.76  Aligned_cols=69  Identities=22%  Similarity=0.389  Sum_probs=61.4

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCc---cceeeccCC---HHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~---~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      .++.|++|+++|      ||+|++++.+|++++++   |+++||+.+   ++.++++.+.+  +..++|++|++|+.++|
T Consensus        10 ~~~~v~~f~~~~------C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~--g~~~vP~i~~~g~~i~g   81 (105)
T 1kte_A           10 QPGKVVVFIKPT------CPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT--GARTVPRVFIGKECIGG   81 (105)
T ss_dssp             CTTCEEEEECSS------CHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHH--SCCCSCEEEETTEEEES
T ss_pred             ccCCEEEEEcCC------CHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHh--CCCCcCeEEECCEEEec
Confidence            456899999998      99999999999999999   999999988   56677888888  57899999999999999


Q ss_pred             ccc
Q psy15946         96 WQE   98 (251)
Q Consensus        96 ~~~   98 (251)
                      +++
T Consensus        82 ~~~   84 (105)
T 1kte_A           82 CTD   84 (105)
T ss_dssp             HHH
T ss_pred             cHH
Confidence            764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.32  E-value=1.1e-12  Score=95.50  Aligned_cols=68  Identities=15%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-C----HHHHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-S----RETQQEFKERLGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~----~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      +.+|+||++++      |++|.+++.+|++++++|+++||+. +    ++..++|.+..|  ..++|+||++|+++||++
T Consensus        11 M~~v~ly~~~~------Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g--~~~vP~l~~~g~~i~G~~   82 (92)
T 3ic4_A           11 MAEVLMYGLST------CPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISG--SYSVPVVVKGDKHVLGYN   82 (92)
T ss_dssp             CSSSEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHS--SSCSCEEEETTEEEESCC
T ss_pred             CceEEEEECCC------ChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcC--CCCcCEEEECCEEEeCCC
Confidence            56799999995      9999999999999999999999973 2    334588888887  789999999999999986


Q ss_pred             H
Q psy15946        176 A  176 (251)
Q Consensus       176 ~  176 (251)
                      .
T Consensus        83 ~   83 (92)
T 3ic4_A           83 E   83 (92)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.28  E-value=5.1e-12  Score=91.55  Aligned_cols=68  Identities=25%  Similarity=0.459  Sum_probs=59.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |++|++|+++|      ||+|++++.+|++++++|+++||+  ++..+++.+.++ +..++|+++++|+.++|++..
T Consensus         5 m~~v~~y~~~~------C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~-~~~~vP~l~~~g~~i~g~~~i   72 (89)
T 2klx_A            5 MKEIILYTRPN------CPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRAN-GRNTFPQIFIGDYHVGGCDDL   72 (89)
T ss_dssp             CCCEEEESCSC------CTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHH-SSCCSCEEEETTEECCSHHHH
T ss_pred             cceEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhC-CCCCcCEEEECCEEEeChHHH
Confidence            56899999997      999999999999999999999998  667788888772 368899999999999997643

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.27  E-value=4.1e-12  Score=96.70  Aligned_cols=69  Identities=20%  Similarity=0.341  Sum_probs=62.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCc---cceeeccCCH---HHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK---FDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~---~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      .+++|++|+++|      ||+|++++.+|++++++   |+++||+.++   +.++++.+.+  |..++|+++++|+.++|
T Consensus        17 ~~~~vv~f~~~~------Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~--g~~~vP~v~i~g~~igg   88 (114)
T 2hze_A           17 ANNKVTIFVKYT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT--GGKTVPRIFFGKTSIGG   88 (114)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHH--SCCSSCEEEETTEEEES
T ss_pred             ccCCEEEEEeCC------ChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHh--CCCCcCEEEECCEEEeC
Confidence            467899999998      99999999999999999   9999999886   6778888888  57899999999999999


Q ss_pred             ccc
Q psy15946         96 WQE   98 (251)
Q Consensus        96 ~~~   98 (251)
                      +++
T Consensus        89 ~~~   91 (114)
T 2hze_A           89 YSD   91 (114)
T ss_dssp             HHH
T ss_pred             cHH
Confidence            764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.25  E-value=9.8e-12  Score=88.07  Aligned_cols=67  Identities=12%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE  100 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~  100 (251)
                      +|++|+++|      ||+|++++.+|++++++|+++|++.+++..+++++ +  +..++|+++++|+.++|++..+
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~--g~~~vP~~~~~g~~~~g~~~~~   68 (81)
T 1h75_A            2 RITIYTRND------CVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-Q--GFRQLPVVIAGDLSWSGFRPDM   68 (81)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-T--TCCSSCEEEETTEEEESCCHHH
T ss_pred             EEEEEcCCC------ChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-h--CCCccCEEEECCEEEecCCHHH
Confidence            589999998      99999999999999999999999999987777764 4  6788999999999988887544

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=96.48  Aligned_cols=69  Identities=22%  Similarity=0.358  Sum_probs=61.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .+++|+||+++|      ||+|++++.+|++++++|+++||+.+   ++.++++.+.+  +..++|+++++|++++|+++
T Consensus        25 ~~~~vvvf~~~~------Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~--g~~~vP~l~i~G~~igg~~~   96 (130)
T 2cq9_A           25 SDNCVVIFSKTS------CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT--GERTVPRIFVNGTFIGGATD   96 (130)
T ss_dssp             HHSSEEEEECSS------CSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHH--SSCCSSEEEETTEEEEEHHH
T ss_pred             cCCcEEEEEcCC------ChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHh--CCCCcCEEEECCEEEcChHH
Confidence            345899999998      99999999999999999999999987   67778888888  57899999999999999764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.22  E-value=2.3e-11  Score=86.09  Aligned_cols=75  Identities=13%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      +|++|++++      |++|.+++.+|++++++|.++|++.+++..+++.+ .|  ..++|++|++|+.+||++.      
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g--~~~vP~~~~~g~~~~g~~~------   66 (81)
T 1h75_A            2 RITIYTRND------CVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLPVVIAGDLSWSGFRP------   66 (81)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TT--CCSSCEEEETTEEEESCCH------
T ss_pred             EEEEEcCCC------ChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hC--CCccCEEEECCEEEecCCH------
Confidence            488999996      99999999999999999999999999888777764 45  7899999999999999763      


Q ss_pred             cCChhhhhccC
Q psy15946        183 SGELRRILKPY  193 (251)
Q Consensus       183 ~G~L~~~L~~~  193 (251)
                       .+|+++|+..
T Consensus        67 -~~l~~~l~~~   76 (81)
T 1h75_A           67 -DMINRLHPAP   76 (81)
T ss_dssp             -HHHGGGSCCC
T ss_pred             -HHHHHHHhcc
Confidence             2466666553

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.22  E-value=1.4e-11  Score=85.62  Aligned_cols=67  Identities=18%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKE  100 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~  100 (251)
                      +|++|+++|      |++|++++.+|++++++|+.+|++.+++..++++ .+  +..++|+++++|+.++|+++..
T Consensus         2 ~i~~y~~~~------C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~-~~--~~~~vP~l~~~g~~~~g~~~~~   68 (75)
T 1r7h_A            2 SITLYTKPA------CVQCTATKKALDRAGLAYNTVDISLDDEARDYVM-AL--GYVQAPVVEVDGEHWSGFRPER   68 (75)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHH-HT--TCBCCCEEEETTEEEESCCHHH
T ss_pred             eEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-Hc--CCCccCEEEECCeEEcCCCHHH
Confidence            589999997      9999999999999999999999999988777775 34  6788999999999988887543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.21  E-value=4.6e-12  Score=90.39  Aligned_cols=67  Identities=24%  Similarity=0.494  Sum_probs=58.1

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      +|++|+++|      ||+|++++.+|++     .+++|.++|++.+++..+++.+.+|.+..++|+++++|+.++|++
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~   73 (85)
T 1ego_A            2 QTVIFGRSG------CPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYT   73 (85)
T ss_dssp             EEEEECCTT------STHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSH
T ss_pred             EEEEEeCCC------CCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHH
Confidence            699999998      9999999999998     789999999987765567788887534789999999999998865

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.21  E-value=8.3e-12  Score=112.99  Aligned_cols=70  Identities=20%  Similarity=0.190  Sum_probs=62.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHH-HHHHcCCccceeec------cCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQ-ILRTHLVKFDDKDV------FMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~-~L~~~~v~~~e~dv------~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|+||++++      ||+|.+|++ +|++++|+|+++||      +.+++++++|++++  |+.++|+|||+|++++
T Consensus       259 ~~~~VvVYsk~~------CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~t--G~~TVPqVFI~Gk~IG  330 (362)
T 2jad_A          259 AENEIFVASKTY------CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN--GQRTVPNIYINGKHIG  330 (362)
T ss_dssp             HTCSEEEEECTT------CHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHH--CCCSSCEEEETTEEEE
T ss_pred             ccCCEEEEEcCC------CcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHH--CCCCcCEEEECCEEEE
Confidence            578999999997      999999997 89999999988887      34678889999988  6899999999999999


Q ss_pred             ccccc
Q psy15946         95 TWQEK   99 (251)
Q Consensus        95 G~~~~   99 (251)
                      |+++.
T Consensus       331 G~DdL  335 (362)
T 2jad_A          331 GNDDL  335 (362)
T ss_dssp             SHHHH
T ss_pred             ChHHH
Confidence            98743

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.19  E-value=2.2e-11  Score=97.18  Aligned_cols=68  Identities=22%  Similarity=0.362  Sum_probs=61.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .+.|+||+++|      ||+|.+++.+|++++++|+++||+.+   ++.++++.+.+  +..++|+++++|+.++|+++
T Consensus        48 ~~~Vvvf~~~~------Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~--g~~tvP~ifi~G~~igG~d~  118 (146)
T 2ht9_A           48 DNCVVIFSKTS------CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT--GERTVPRIFVNGTFIGGATD  118 (146)
T ss_dssp             HCSEEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHH--SCCCSCEEEETTEEEESHHH
T ss_pred             CCCEEEEECCC------ChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHh--CCCCcCeEEECCEEEeCchH
Confidence            45899999998      99999999999999999999999987   67778888888  57899999999999999764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.16  E-value=8.5e-11  Score=88.61  Aligned_cols=86  Identities=23%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH---HHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~---~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ..|++|+++|      |++|.+++.+|++.+++|..+|++.++.   .+.++.+.+|  ..++|++|++|+.+|+++.+.
T Consensus        20 ~~vv~f~a~~------C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~--v~~~Pt~~~~g~~v~~~~~~~   91 (116)
T 2e7p_A           20 APVVVFSKTY------CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTG--RGTVPNVFIGGKQIGGCDTVV   91 (116)
T ss_dssp             SSEEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHS--CCSSCEEEETTEEEECHHHHH
T ss_pred             CCEEEEECCC------ChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhC--CCCcCEEEECCEEECChHHHH
Confidence            4578899997      9999999999999999999999976543   4567877776  789999999999999999999


Q ss_pred             HHHHcCChhhhhccCCC
Q psy15946        179 RLNESGELRRILKPYKS  195 (251)
Q Consensus       179 ~l~e~G~L~~~L~~~~~  195 (251)
                      .++..++|.++|+.+..
T Consensus        92 ~~~~~~~l~~~l~~~g~  108 (116)
T 2e7p_A           92 EKHQRNELLPLLQDAAA  108 (116)
T ss_dssp             HHHHTTCHHHHHHHTTC
T ss_pred             HHHhCChHHHHHHHccc
Confidence            99999999999987653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.13  E-value=3.9e-11  Score=102.35  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      .+.+|+||++++      ||+|.+|+++|++++++|+++||+.+++ .+++++.+  |..++|+++++|++++|+++.
T Consensus       168 ~~~~i~ly~~~~------Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~--g~~~vP~~~~~g~~i~g~~~i  236 (241)
T 1nm3_A          168 VQESISIFTKPG------CPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVS--GRTTVPQVFIGGKHIGGSDDL  236 (241)
T ss_dssp             CCCCEEEEECSS------CHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHT--CCSSSCEEEETTEEEESHHHH
T ss_pred             ccceEEEEECCC------ChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHh--CCCCcCEEEECCEEEECHHHH
Confidence            467899999997      9999999999999999999999998865 48888887  578999999999999998754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.09  E-value=2.2e-10  Score=79.48  Aligned_cols=65  Identities=20%  Similarity=0.389  Sum_probs=57.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      +|++|++++      |++|.+++.+|++++++|+.+|++.+++..++++ ..|  ..++|+++++|+.+||++.
T Consensus         2 ~i~~y~~~~------C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~-~~~--~~~vP~l~~~g~~~~g~~~   66 (75)
T 1r7h_A            2 SITLYTKPA------CVQCTATKKALDRAGLAYNTVDISLDDEARDYVM-ALG--YVQAPVVEVDGEHWSGFRP   66 (75)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHH-HTT--CBCCCEEEETTEEEESCCH
T ss_pred             eEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-HcC--CCccCEEEECCeEEcCCCH
Confidence            478999986      9999999999999999999999999988877774 455  7899999999999999763

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.96  E-value=4e-10  Score=83.84  Aligned_cols=66  Identities=14%  Similarity=0.313  Sum_probs=53.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHH--HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc--ccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILR--THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH--IGTWQ   97 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~--~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~--~gG~~   97 (251)
                      .+..|++|+++|      |++|++++.+|+  ..+++|.++||+ +++. .++.+.+  + .++|+++++|+.  ++|++
T Consensus        15 ~~~~v~~f~~~~------C~~C~~~~~~L~~l~~~i~~~~vdi~-~~~~-~el~~~~--g-~~vP~l~~~g~~~~~~g~~   83 (100)
T 1wjk_A           15 ALPVLTLFTKAP------CPLCDEAKEVLQPYKDRFILQEVDIT-LPEN-STWYERY--K-FDIPVFHLNGQFLMMHRVN   83 (100)
T ss_dssp             CCCEEEEEECSS------CHHHHHHHHHTSTTSSSSEEEEEETT-SSTT-HHHHHHS--S-SSCSEEEESSSEEEESSCC
T ss_pred             CCCEEEEEeCCC------CcchHHHHHHHHHhhhCCeEEEEECC-Ccch-HHHHHHH--C-CCCCEEEECCEEEEecCCC
Confidence            456899999998      999999999999  567999999998 2222 5666666  6 889999999887  56655


Q ss_pred             c
Q psy15946         98 E   98 (251)
Q Consensus        98 ~   98 (251)
                      .
T Consensus        84 ~   84 (100)
T 1wjk_A           84 T   84 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.90  E-value=1.3e-09  Score=82.37  Aligned_cols=59  Identities=19%  Similarity=0.267  Sum_probs=49.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeecccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI   93 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~   93 (251)
                      .|..|++|+++|      |++|++++.+|++    ++++|+++||+.++++.    +.+|  . .+|++  +++|+.+
T Consensus        28 ~m~~vv~y~~~~------C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~----~~yg--v-~VP~l~~~~dG~~v   92 (107)
T 2fgx_A           28 EPRKLVVYGREG------CHLCEEMIASLRVLQKKSWFELEVINIDGNEHLT----RLYN--D-RVPVLFAVNEDKEL   92 (107)
T ss_dssp             CCCCEEEEECSS------CHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHH----HHST--T-SCSEEEETTTTEEE
T ss_pred             CccEEEEEeCCC------ChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH----HHhC--C-CCceEEEEECCEEE
Confidence            356899999998      9999999999998    79999999999998743    3443  3 39999  8888876

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.89  E-value=1.2e-09  Score=105.02  Aligned_cols=69  Identities=26%  Similarity=0.403  Sum_probs=61.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC---HHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS---RETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d---~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .+++|+||+++|      ||+|.++|++|++++++|+++||+.+   ++.++++++++  +..++|++|++|++++|+++
T Consensus        16 ~~~~v~vy~~~~------Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~--g~~tvP~v~i~g~~igG~~~   87 (598)
T 2x8g_A           16 DSAAVILFSKTT------CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS--KIETVPQMFVRGKFIGDSQT   87 (598)
T ss_dssp             HHCSEEEEECTT------CHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHH--SCCCSCEEEETTEEEECHHH
T ss_pred             ccCCEEEEECCC------ChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHh--CCceeCEEEECCEEEEeeeh
Confidence            567899999997      99999999999999999999999876   66778888777  68899999999999999763

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.88  E-value=2.1e-09  Score=78.23  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCc-cceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK-FDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGT   95 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~-~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~gG   95 (251)
                      +|++|+++|      |++|+.++.+|++.+++ |.++||+.++++.+    .+|  .. +|+++ ++|+.++|
T Consensus         2 ~vv~f~a~~------C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~----~~g--~~-vPtl~~~~G~~v~g   61 (87)
T 1ttz_A            2 ALTLYQRDD------CHLCDQAVEALAQARAGAFFSVFIDDDAALES----AYG--LR-VPVLRDPMGRELDW   61 (87)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHTTCCCEEEEECTTCHHHHH----HHT--TT-CSEEECTTCCEEES
T ss_pred             EEEEEECCC------CchHHHHHHHHHHHHHhheEEEECCCCHHHHH----HhC--CC-cCeEEEECCEEEeC
Confidence            599999998      99999999999999997 89999999987443    443  44 99999 78877743

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.85  E-value=1.4e-09  Score=82.97  Aligned_cols=71  Identities=20%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhC-------------C-C--------
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLG-------------T-D--------   79 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g-------------~-g--------   79 (251)
                      +|+||++++      |++|++|+++|+++|++|+++|+..++   +.++++.+.+|             . +        
T Consensus         1 ~i~iY~~~~------C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~   74 (114)
T 1rw1_A            1 TYVLYGIKA------CDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLD   74 (114)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCC
T ss_pred             CEEEEECCC------ChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCC
Confidence            489999996      999999999999999999999998766   55666655554             0 0        


Q ss_pred             -------------CCCCCceeeecccccccccccc
Q psy15946         80 -------------VINVPQIFVEGVHIGTWQEKEA  101 (251)
Q Consensus        80 -------------~~~vP~i~i~g~~~gG~~~~~~  101 (251)
                                   -...|.+..+++.+.||++...
T Consensus        75 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~~~~  109 (114)
T 1rw1_A           75 EAKAIELMLAQPSMIKRPVLELGGRTLVGFKPDAY  109 (114)
T ss_dssp             HHHHHHHHHHCGGGBCSCEEECSSCEEESCCHHHH
T ss_pred             HHHHHHHHHhChhheeCcEEEECCEEEEeCCHHHH
Confidence                         2356999988888888886653

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.85  E-value=3.2e-09  Score=83.06  Aligned_cols=73  Identities=21%  Similarity=0.369  Sum_probs=59.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh---CCC----------------------
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL---GTD----------------------   79 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~---g~g----------------------   79 (251)
                      +|+||++++      |++|++|+++|+++|++|+++|+..++...+++.+++   |.+                      
T Consensus         2 mi~lY~~~~------C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~l   75 (132)
T 1z3e_A            2 MVTLYTSPS------CTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESM   75 (132)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGS
T ss_pred             eEEEEeCCC------ChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccC
Confidence            489999996      9999999999999999999999999877677776654   211                      


Q ss_pred             --------------CCCCCceeeecccccccccccchh
Q psy15946         80 --------------VINVPQIFVEGVHIGTWQEKEAGK  103 (251)
Q Consensus        80 --------------~~~vP~i~i~g~~~gG~~~~~~~~  103 (251)
                                    -...|.+.++++.+.||++.....
T Consensus        76 s~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~~~~~~  113 (132)
T 1z3e_A           76 PLQDLYRLINEHPGLLRRPIIIDEKRLQVGYNEDEIRR  113 (132)
T ss_dssp             BHHHHHHHHHHCGGGBCSCEEECSSCEEESCCTTGGGG
T ss_pred             CHHHHHHHHHhCccceeCCEEEECCEEEEcCCHHHHHH
Confidence                          135799999888888988766443

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.84  E-value=8.3e-10  Score=78.18  Aligned_cols=71  Identities=17%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHH----HHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeCChH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQ----ILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGDAD  175 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~----lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iGG~d  175 (251)
                      ++|++|+++|      |++|.+++.    ++++++++|..+|++.+.+.. ++.+.+|  ..++|++||||+  ++|+..
T Consensus         2 ~~~~~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~g--v~~vPt~~i~g~~~~~G~~~   72 (80)
T 2k8s_A            2 ASKAIFYHAG------CPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARI-AEAEKAG--VKSVPALVIDGAAFHINFGA   72 (80)
T ss_dssp             CEEEEEEECS------CHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTH-HHHHHHT--CCEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEeCCC------CCchHHHHHHHHHHHHhcCCeEEEEEecCChhhH-HHHHHcC--CCcCCEEEECCEEEEeccCc
Confidence            3689999996      999999999    777788999999998653333 3445566  789999999999  888866


Q ss_pred             HHHHHH
Q psy15946        176 AIERLN  181 (251)
Q Consensus       176 ~l~~l~  181 (251)
                      ++.+|.
T Consensus        73 ~~~~l~   78 (80)
T 2k8s_A           73 GIDDLK   78 (80)
T ss_dssp             EHHHHC
T ss_pred             CHHHhh
Confidence            666553

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.79  E-value=1.9e-09  Score=76.31  Aligned_cols=63  Identities=16%  Similarity=0.272  Sum_probs=48.7

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHH----HHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc--cccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQ----ILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGT   95 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~----~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~--~~gG   95 (251)
                      .+|++|+++|      ||+|++++.    ++++++++|+.+||+.+.+..+.+ +.+  |..++|+++++|+  ++|+
T Consensus         2 ~~~~~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--gv~~vPt~~i~g~~~~~G~   70 (80)
T 2k8s_A            2 ASKAIFYHAG------CPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEA-EKA--GVKSVPALVIDGAAFHINF   70 (80)
T ss_dssp             CEEEEEEECS------CHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHH-HHH--TCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEeCCC------CCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHH-HHc--CCCcCCEEEECCEEEEecc
Confidence            4799999998      999999999    666677889999998753333333 455  5788999999987  4444

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.78  E-value=3e-09  Score=81.82  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhCC--------------C--------
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGT--------------D--------   79 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g~--------------g--------   79 (251)
                      +|+||++++      |++|++|+++|+++|++|+++|+..++   +.++++.+.+|.              +        
T Consensus         6 ~i~iY~~~~------C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~   79 (120)
T 2kok_A            6 SVTIYGIKN------CDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVD   79 (120)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCC
T ss_pred             EEEEEECCC------ChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCC
Confidence            599999996      999999999999999999999998665   556666555540              0        


Q ss_pred             -------------CCCCCceeeecccccccccccc
Q psy15946         80 -------------VINVPQIFVEGVHIGTWQEKEA  101 (251)
Q Consensus        80 -------------~~~vP~i~i~g~~~gG~~~~~~  101 (251)
                                   -...|.+..+++.+.||++...
T Consensus        80 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~~~~  114 (120)
T 2kok_A           80 AASARELMLAQPSMVKRPVLERDGKLMVGFKPAQY  114 (120)
T ss_dssp             HHHHHHHHHHCGGGBCSSEEEETTEEEECCCHHHH
T ss_pred             HHHHHHHHHhCcccEECCEEEECCEEEEeCCHHHH
Confidence                         2456988888888888886653

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.72  E-value=1.7e-08  Score=75.72  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=56.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH---HHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~---~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      .+.|++|+++|      |++|++++.+|++.+++|..+||+.+++   ...++.+.+  +..++|++|++|+.+++++
T Consensus        19 ~~~vv~f~a~~------C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~--~v~~~Pt~~~~g~~v~~~~   88 (116)
T 2e7p_A           19 SAPVVVFSKTY------CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT--GRGTVPNVFIGGKQIGGCD   88 (116)
T ss_dssp             SSSEEEEECTT------CHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHH--SCCSSCEEEETTEEEECHH
T ss_pred             CCCEEEEECCC------ChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHh--CCCCcCEEEECCEEECChH
Confidence            45789999998      9999999999999999999999987654   345677777  5778999999999888765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.72  E-value=2e-08  Score=72.95  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCc-eeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK-FDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGD  173 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~-~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG  173 (251)
                      +|++|+++|      |+.|..++.+|++.+++ |.++||+.+++    +.+..|  .. +|+|+ +||+.++|
T Consensus         2 ~vv~f~a~~------C~~C~~~~~~L~~~~~~~~~~vdid~~~~----l~~~~g--~~-vPtl~~~~G~~v~g   61 (87)
T 1ttz_A            2 ALTLYQRDD------CHLCDQAVEALAQARAGAFFSVFIDDDAA----LESAYG--LR-VPVLRDPMGRELDW   61 (87)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHTTCCCEEEEECTTCHH----HHHHHT--TT-CSEEECTTCCEEES
T ss_pred             EEEEEECCC------CchHHHHHHHHHHHHHhheEEEECCCCHH----HHHHhC--CC-cCeEEEECCEEEeC
Confidence            589999997      99999999999999997 89999998876    444555  44 99999 89999854

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.71  E-value=1e-08  Score=76.13  Aligned_cols=65  Identities=14%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHH--hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCee--eCChHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILR--THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH--IGDADA  176 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~--~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~--iGG~d~  176 (251)
                      ...|++|++++      |++|.+++.+|+  ..+++|.++|++. ++. .++.+.+|   .++|++|++|+.  +||++.
T Consensus        16 ~~~v~~f~~~~------C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~-~el~~~~g---~~vP~l~~~g~~~~~~g~~~   84 (100)
T 1wjk_A           16 LPVLTLFTKAP------CPLCDEAKEVLQPYKDRFILQEVDITL-PEN-STWYERYK---FDIPVFHLNGQFLMMHRVNT   84 (100)
T ss_dssp             CCEEEEEECSS------CHHHHHHHHHTSTTSSSSEEEEEETTS-STT-HHHHHHSS---SSCSEEEESSSEEEESSCCH
T ss_pred             CCEEEEEeCCC------CcchHHHHHHHHHhhhCCeEEEEECCC-cch-HHHHHHHC---CCCCEEEECCEEEEecCCCH
Confidence            44689999996      999999999999  6789999999982 222 56666663   789999999998  788664

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.55  E-value=7.8e-08  Score=72.59  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHh----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +..|++|+++|      |+.|..++.+|++    ++++|.++||+.+++.    .+..|  . .+|+|  |++|+.+
T Consensus        29 m~~vv~y~~~~------C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l----~~~yg--v-~VP~l~~~~dG~~v   92 (107)
T 2fgx_A           29 PRKLVVYGREG------CHLCEEMIASLRVLQKKSWFELEVINIDGNEHL----TRLYN--D-RVPVLFAVNEDKEL   92 (107)
T ss_dssp             CCCEEEEECSS------CHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHH----HHHST--T-SCSEEEETTTTEEE
T ss_pred             ccEEEEEeCCC------ChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHH----HHHhC--C-CCceEEEEECCEEE
Confidence            45699999997      9999999999998    8999999999988764    44555  3 49999  9999987

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.50  E-value=1e-07  Score=83.16  Aligned_cols=68  Identities=16%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc----CC---ccc--eee--ccCCHHH------H-HHHHHHhCCCCCCC--
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LV---KFD--DKD--VFMSRET------Q-QEFKERLGTDVINV--   83 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v---~~~--e~d--v~~d~~~------~-~el~~~~g~g~~~v--   83 (251)
                      ..|+|||+++      ||+|.+|+++|+++    ++   .|+  +.|  ...|+..      + +++.+..  |..++  
T Consensus        44 ~~VelyTs~g------Cp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~--G~~tVyT  115 (270)
T 2axo_A           44 GVVELFTSQG------CASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRAL--GRNGVYT  115 (270)
T ss_dssp             CEEEEEECTT------CTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHT--TCSCCCS
T ss_pred             cEEEEEeCCC------CCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHh--CCCcccC
Confidence            5899999997      99999999999998    66   454  222  1233221      2 2345455  56678  


Q ss_pred             Cceeeecc-cccccccc
Q psy15946         84 PQIFVEGV-HIGTWQEK   99 (251)
Q Consensus        84 P~i~i~g~-~~gG~~~~   99 (251)
                      |+++|||+ +++|+++.
T Consensus       116 PqI~Ing~~~v~G~d~~  132 (270)
T 2axo_A          116 PQAILNGRDHVKGADVR  132 (270)
T ss_dssp             SEEEETTTEEEETTCHH
T ss_pred             CEEEECCEEeecCCCHH
Confidence            99999999 68897753

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.46  E-value=5.9e-08  Score=76.80  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=42.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |.+|+||++++      |++|++|+++|+++|++|+++|+..++..++++.+++
T Consensus         1 M~~itiY~~p~------C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~   48 (141)
T 1s3c_A            1 MSNITIYHNPA------SGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLI   48 (141)
T ss_dssp             --CCEEECCTT------CHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCC------ChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHh
Confidence            45799999996      9999999999999999999999999887778777766

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.46  E-value=8.2e-08  Score=73.99  Aligned_cols=49  Identities=8%  Similarity=0.103  Sum_probs=42.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .|.+|+||++++      |++|++|+++|+++|++|+++|+..++..+++|.+++
T Consensus         3 ~M~~i~iY~~p~------C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l   51 (121)
T 3rdw_A            3 AMKDVTIYHNPR------CSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELL   51 (121)
T ss_dssp             ---CCEEECCTT------CHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             CCCcEEEEECCC------CHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHH
Confidence            467799999996      9999999999999999999999999888888887776

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.37  E-value=8.6e-06  Score=69.50  Aligned_cols=135  Identities=13%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcC-----------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ec-
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EG-   90 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g-   90 (251)
                      +-+++|..+|.    .|++|+.++.+|++..           |.|..+|++.+++    +.+.+  +...+|.+.+ +| 
T Consensus        27 pv~v~~~~~~~----~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~----~~~~~--gv~~~Pt~~i~~g~   96 (243)
T 2hls_A           27 PVEVHVFLSKS----GCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSD----KFSEF--KVERVPTVAFLGGE   96 (243)
T ss_dssp             CEEEEEEECSS----SCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHH----HHHHT--TCCSSSEEEETTTT
T ss_pred             CEEEEEEeCCC----CCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHH----HHHhc--CCCcCCEEEEECCc
Confidence            45667777751    2999999999887632           6666777776655    44455  3557898865 22 


Q ss_pred             -ccccc------------------c----cc--------c-cchheeeeeeecccccCCCcchHHHHHHHHh--------
Q psy15946         91 -VHIGT------------------W----QE--------K-EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT--------  130 (251)
Q Consensus        91 -~~~gG------------------~----~~--------~-~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~--------  130 (251)
                       ++.|.                  .    ++        . ..-.|++|+++|      |++|..+...|++        
T Consensus        97 ~~~~G~~~~~~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~w------C~~C~~~~p~l~~la~~~~~~  170 (243)
T 2hls_A           97 VRWTGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPS------CPYCPYAVLLAHMFAYEAWKQ  170 (243)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSS------CSSHHHHHHHHHHHHHHHHHT
T ss_pred             eeEcCCCcHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCC------CCCcHHHHHHHHHHHHHcccc
Confidence             22111                  0    00        0 111256688886      9999999998865        


Q ss_pred             --cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeCCh--HHHHHH
Q psy15946        131 --HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGDA--DAIERL  180 (251)
Q Consensus       131 --~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iGG~--d~l~~l  180 (251)
                        .+|.+..+|+..+++    +.+..+  ..++|.+|++|+  +.|..  +++.+.
T Consensus       171 ~~~~v~~~~vd~~~~~~----~~~~~~--V~~vPt~~i~G~~~~~G~~~~~~l~~~  220 (243)
T 2hls_A          171 GNPVILSEAVEAYENPD----IADKYG--VMSVPSIAINGYLVFVGVPYEEDFLDY  220 (243)
T ss_dssp             TCCCEEEEEEETTTCHH----HHHHTT--CCSSSEEEETTEEEEESCCCHHHHHHH
T ss_pred             cCCcEEEEEEECccCHH----HHHHcC--CeeeCeEEECCEEEEeCCCCHHHHHHH
Confidence              468888999987754    444455  779999999998  44543  344443

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.37  E-value=3.6e-07  Score=79.63  Aligned_cols=67  Identities=24%  Similarity=0.427  Sum_probs=48.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhc----CC---cee--EEE--cCCC----HH---HHHHHHHHhCCCCCCC--
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LV---KFD--DKD--VFMS----RE---TQQEFKERLGTDVINV--  161 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~----~v---~~~--e~d--v~~~----~~---~~~el~~~~g~~~~~v--  161 (251)
                      ..|.|||+.      +|++|.+++++|+++    ++   .|+  +.|  ...|    ++   ..+++.+..|  ..++  
T Consensus        44 ~~VelyTs~------gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G--~~tVyT  115 (270)
T 2axo_A           44 GVVELFTSQ------GCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALG--RNGVYT  115 (270)
T ss_dssp             CEEEEEECT------TCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTT--CSCCCS
T ss_pred             cEEEEEeCC------CCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhC--CCcccC
Confidence            569999999      599999999999999    66   444  222  1122    22   2344566666  6788  


Q ss_pred             ceEEECCe-eeCChHH
Q psy15946        162 PQIFVEGV-HIGDADA  176 (251)
Q Consensus       162 P~vfi~g~-~iGG~d~  176 (251)
                      |||||||+ ++||+|.
T Consensus       116 PqI~Ing~~~v~G~d~  131 (270)
T 2axo_A          116 PQAILNGRDHVKGADV  131 (270)
T ss_dssp             SEEEETTTEEEETTCH
T ss_pred             CEEEECCEEeecCCCH
Confidence            99999999 7999874

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.35  E-value=3.4e-07  Score=70.31  Aligned_cols=45  Identities=20%  Similarity=0.411  Sum_probs=42.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||++++      |++|++|+++|+++|++|+++|+..++...+++.+++
T Consensus         2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l   46 (120)
T 3l78_A            2 VTLFLSPS------CTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKIL   46 (120)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             EEEEeCCC------CHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHH
Confidence            89999996      9999999999999999999999999888888888876

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.35  E-value=4.2e-07  Score=70.87  Aligned_cols=46  Identities=22%  Similarity=0.491  Sum_probs=40.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL  154 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~  154 (251)
                      .|+||+++      .|++|.+++++|+++|++|+++|+..++..+++|.+++
T Consensus         2 mi~lY~~~------~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l   47 (132)
T 1z3e_A            2 MVTLYTSP------SCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   47 (132)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHH
Confidence            38899999      59999999999999999999999998876677776664

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.32  E-value=3.5e-07  Score=70.34  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .|+||++++      |++|++|+++|+++|++|+++|+..++..++++.+++
T Consensus         5 ~i~iY~~p~------C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l   50 (120)
T 3gkx_A            5 KTLFLQYPA------CSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWI   50 (120)
T ss_dssp             CCEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHH
T ss_pred             EEEEEECCC------ChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHH
Confidence            489999996      9999999999999999999999999888788877765

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.29  E-value=5.6e-07  Score=69.14  Aligned_cols=46  Identities=15%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .|+||++++      |++|++|+++|+++|++|+++|+..++..++++.+++
T Consensus         4 Mi~iY~~~~------C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l   49 (120)
T 3fz4_A            4 MLTFYEYPK------CSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWL   49 (120)
T ss_dssp             SEEEEECSS------CHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             eEEEEeCCC------ChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHH
Confidence            599999996      9999999999999999999999999988888887776

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.29  E-value=7.5e-06  Score=68.06  Aligned_cols=120  Identities=16%  Similarity=0.287  Sum_probs=80.8

Q ss_pred             eEEEEeec-CCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccc----
Q psy15946         25 KIVMYSTT-MGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH----   92 (251)
Q Consensus        25 ~vvvyt~~-~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~----   92 (251)
                      .|+.|+++ |      |++|++++..|++     ..+.|..+|++. ++. .++.+.+  +..++|.+.+  +|+.    
T Consensus        25 ~lv~f~~~~~------C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~--~v~~~Pt~~~~~~g~~~~~~   94 (226)
T 1a8l_A           25 KLIVFVRKDH------CQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRY--RIDRAPATTITQDGKDFGVR   94 (226)
T ss_dssp             EEEEEECSSS------CTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHT--TCCSSSEEEEEETTBCCSEE
T ss_pred             EEEEEecCCC------CchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHc--CCCcCceEEEEcCCceeeEE
Confidence            56788888 9      9999999999987     346777778774 222 3455566  5678999976  4532    


Q ss_pred             ccccc-----------------------c-----c--cchh--eeeeeeecccccCCCcchHHHHHHHHh----------
Q psy15946         93 IGTWQ-----------------------E-----K--EAGK--IVMYSTTMGIVRDTYHRCLKVKQILRT----------  130 (251)
Q Consensus        93 ~gG~~-----------------------~-----~--~~~~--Vviyt~sl~~ir~tc~~C~~~k~lL~~----------  130 (251)
                      ..|..                       .     .  ..++  ++.|+++|      |++|.++...|++          
T Consensus        95 ~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~  168 (226)
T 1a8l_A           95 YFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPT------CPYCPLAVRMAHKFAIENTKAGK  168 (226)
T ss_dssp             EESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSS------CTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCC------CCccHHHHHHHHHHHHhcccccC
Confidence            11210                       0     0  0112  66788886      9999988877765          


Q ss_pred             cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        131 HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       131 ~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      .++.+..+|++.+++    +.+..+  ...+|.+++
T Consensus       169 ~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~  198 (226)
T 1a8l_A          169 GKILGDMVEAIEYPE----WADQYN--VMAVPKIVI  198 (226)
T ss_dssp             CCEEEEEEEGGGCHH----HHHHTT--CCSSCEEEE
T ss_pred             CcEEEEEEEcccCHH----HHHhCC--CcccCeEEE
Confidence            267788888876654    445555  778999766

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.22  E-value=3.6e-07  Score=70.13  Aligned_cols=46  Identities=11%  Similarity=0.168  Sum_probs=40.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      +|+||+.+.      |++|++|+++|+++|++|+++|+..++...+++.+++
T Consensus         5 ~i~iY~~p~------C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l   50 (119)
T 3f0i_A            5 SVVIYHNPK------CSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLY   50 (119)
T ss_dssp             CCEEECCTT------CHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHH
T ss_pred             EEEEEECCC------ChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHH
Confidence            599999996      9999999999999999999999988776666666655

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.16  E-value=1.1e-06  Score=66.65  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=36.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH---HHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~---~~~~el~~~~g  155 (251)
                      |+||+++      .|++|.+++++|+++||+|+++|+..++   +..+++.+.+|
T Consensus         2 i~iY~~~------~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g   50 (114)
T 1rw1_A            2 YVLYGIK------ACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHG   50 (114)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHC
T ss_pred             EEEEECC------CChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCC
Confidence            7899999      5999999999999999999999997543   44444444443

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.15  E-value=7.3e-07  Score=68.34  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH---HHHHHHHHHhCC--------------C--------
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGT--------------D--------  157 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~---~~~~el~~~~g~--------------~--------  157 (251)
                      .|+||+++      .|++|.+++++|+++||+|+++|+..++   +..+++.+.+|-              +        
T Consensus         6 ~i~iY~~~------~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~   79 (120)
T 2kok_A            6 SVTIYGIK------NCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVD   79 (120)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCC
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCC
Confidence            58999999      5999999999999999999999996544   444444444440              0        


Q ss_pred             -------------CCCCceEEECCeeeCChHH
Q psy15946        158 -------------VINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       158 -------------~~~vP~vfi~g~~iGG~d~  176 (251)
                                   -...|.|..+++.+-|++.
T Consensus        80 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  111 (120)
T 2kok_A           80 AASARELMLAQPSMVKRPVLERDGKLMVGFKP  111 (120)
T ss_dssp             HHHHHHHHHHCGGGBCSSEEEETTEEEECCCH
T ss_pred             HHHHHHHHHhCcccEECCEEEECCEEEEeCCH
Confidence                         2457999998887766653

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=97.95  E-value=2.2e-06  Score=67.64  Aligned_cols=48  Identities=8%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      ..|+||+++      +|++|.+++++|+++||+|+++|+..++..+++|.++++
T Consensus         2 ~~itiY~~p------~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~   49 (141)
T 1s3c_A            2 SNITIYHNP------ASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIA   49 (141)
T ss_dssp             -CCEEECCT------TCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECC------CChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhc
Confidence            468999999      599999999999999999999999987777777776654

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.91  E-value=4.6e-06  Score=58.21  Aligned_cols=58  Identities=17%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      |..|++|+++|      |++|+++...|++.      ++.+..+|++.+++.    .+.+  +...+|.++++|+.
T Consensus         2 m~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~~G~~   65 (85)
T 1nho_A            2 VVNIEVFTSPT------CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEY--GLMAVPAIAINGVV   65 (85)
T ss_dssp             CCCEEEESCSS------SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGT--CSSCSSEEEETTTE
T ss_pred             eEEEEEEECCC------CcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH----HHhC--CceeeCEEEECCEE
Confidence            45799999998      99999999888762      688899999888753    3344  56789999997763

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=97.89  E-value=5.4e-06  Score=63.68  Aligned_cols=49  Identities=8%  Similarity=0.106  Sum_probs=42.5

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |..|+||+++      .|+.|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         4 M~~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   52 (121)
T 3rdw_A            4 MKDVTIYHNP------RCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQ   52 (121)
T ss_dssp             --CCEEECCT------TCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHH
T ss_pred             CCcEEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHH
Confidence            5569999999      599999999999999999999999988877778777764

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=97.82  E-value=1.3e-05  Score=61.43  Aligned_cols=46  Identities=20%  Similarity=0.426  Sum_probs=41.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+++      .|++|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~   47 (120)
T 3l78_A            2 VTLFLSP------SCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILS   47 (120)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHh
Confidence            7899999      599999999999999999999999988777777777764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.80  E-value=0.00044  Score=57.45  Aligned_cols=112  Identities=19%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             CchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee-c-cc---cccc----------
Q psy15946         40 YHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-G-VH---IGTW----------   96 (251)
Q Consensus        40 C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~-g-~~---~gG~----------   96 (251)
                      |++|+.+...+++.        .|.+..+|.+.+++    +.+.+  +...+|.+.+- | ..   ..|.          
T Consensus        37 C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~  110 (229)
T 2ywm_A           37 CQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE----ETEKY--GVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLI  110 (229)
T ss_dssp             GGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHH----HHHHT--TCCBSSEEEEESSSCCCEEEESCCCTTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHH----HHHHc--CCCcCcEEEEECCCcccceecCCccHHHHHHHH
Confidence            66666665555554        36677778777665    44555  46678988653 3 11   1110          


Q ss_pred             -------------cc-------ccchhe--eeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHH
Q psy15946         97 -------------QE-------KEAGKI--VMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQE  149 (251)
Q Consensus        97 -------------~~-------~~~~~V--viyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~e  149 (251)
                                   ++       ...+++  +.|+++|      |++|..+...|++.     ++.+..+|++.+++    
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~w------C~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----  180 (229)
T 2ywm_A          111 NGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTS------CGYCPSAAVMAWDFALANDYITSKVIDASENQD----  180 (229)
T ss_dssp             HHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTT------CTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH----
T ss_pred             HHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCC------CcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH----
Confidence                         00       012233  4488786      99999988887664     67788888877654    


Q ss_pred             HHHHhCCCCCCCceEEECCe
Q psy15946        150 FKERLGTDVINVPQIFVEGV  169 (251)
Q Consensus       150 l~~~~g~~~~~vP~vfi~g~  169 (251)
                      +.+..+  ...+|.++++|+
T Consensus       181 l~~~~~--v~~~Pt~~~~G~  198 (229)
T 2ywm_A          181 LAEQFQ--VVGVPKIVINKG  198 (229)
T ss_dssp             HHHHTT--CCSSSEEEEGGG
T ss_pred             HHHHcC--CcccCEEEECCE
Confidence            445555  778999999887

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=97.80  E-value=1.2e-05  Score=61.54  Aligned_cols=47  Identities=17%  Similarity=0.298  Sum_probs=41.5

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      .|+||+++      .|+.|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         5 ~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   51 (120)
T 3gkx_A            5 KTLFLQYP------ACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIP   51 (120)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHH
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHH
Confidence            48999999      599999999999999999999999988777777777654

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.80  E-value=0.00012  Score=67.59  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=52.8

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERL  180 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l  180 (251)
                      .++++|+...      |++|.+++-+|+..|++|+.+.++.. ...+++.+..  +..++|.+.+ +|..|.....+.+.
T Consensus       251 ~~~~L~~~~~------sp~~~rv~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~~g~~l~eS~aI~~y  321 (471)
T 4ags_A          251 GGHVLYSNLF------CPFVDRARLASELRKFQMHIVEVPLH-PQPEWYKYIN--PRDTVPALFTPSGEAVHESQLIVQY  321 (471)
T ss_dssp             TSCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCCS-SCCTTHHHHC--TTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CcEEEEecCC------CchHHHHHHHHHHCCCCcEEEEecCC-cCcHHHHHhC--CCCCcCeEEeCCCcEeecHHHHHHH
Confidence            3477777774      99999999999999999999988654 2223445554  3678999986 78888776666554


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus       322 L  322 (471)
T 4ags_A          322 I  322 (471)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.77  E-value=4.5e-06  Score=58.24  Aligned_cols=58  Identities=19%  Similarity=0.376  Sum_probs=45.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      |..|++|+++|      |++|+++...|++.      ++.+..+|++.+++.    .+.+  +...+|.++++|+.
T Consensus         3 ~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~~G~~   66 (85)
T 1fo5_A            3 KVKIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEY--GIMAVPTIVINGDV   66 (85)
T ss_dssp             CEEEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTST--TTCCSSEEEETTEE
T ss_pred             ceEEEEEeCCC------CCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHH----HHHC--CCcccCEEEECCEE
Confidence            55799999998      99999999888762      578888898877653    2333  46779999997763

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=97.76  E-value=0.00021  Score=59.47  Aligned_cols=125  Identities=14%  Similarity=0.229  Sum_probs=80.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------C--CccceeeccCCHHHHHHHHHHhCCCCCCCCceee--ecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV   91 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~   91 (251)
                      ..-++.|+++|      |++|++....|++.       +  +.+..+|++.+.+    +.+.+  +...+|.+++  +|+
T Consensus        33 ~~v~v~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~~~~g~  100 (241)
T 3idv_A           33 DTVLLEFYAPW------CGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV----LASRF--DVSGYPTIKILKKGQ  100 (241)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHT--TCCSSSEEEEEETTE
T ss_pred             CeEEEEEECCC------CHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH----HHHhc--CCCcCCEEEEEcCCC
Confidence            44678889998      99999988777663       2  7777888887765    44455  4677899864  333


Q ss_pred             cc---ccccc-----------------------------------ccchheeeeeeecccccCCCcchHHHHHHHHh---
Q psy15946         92 HI---GTWQE-----------------------------------KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRT---  130 (251)
Q Consensus        92 ~~---gG~~~-----------------------------------~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~---  130 (251)
                      .+   ++.+.                                   ....-++.|+++|      |+.|..+...|..   
T Consensus       101 ~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~w------C~~C~~~~p~~~~~a~  174 (241)
T 3idv_A          101 AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPW------CGHCKKLAPEYEKAAK  174 (241)
T ss_dssp             EEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTT------CTGGGGTHHHHHHHHH
T ss_pred             cccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCC------CHHHHHhHHHHHHHHH
Confidence            22   22100                                   0011245577776      9999865544432   


Q ss_pred             -c-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        131 -H-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       131 -~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                       +     .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus       175 ~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~g~~~  217 (241)
T 3idv_A          175 ELSKRSPPIPLAKVDATAETD----LAKRFD--VSGYPTLKIFRKGRPY  217 (241)
T ss_dssp             HHHTSSSCCCEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             HHhccCCcEEEEEEECCCCHH----HHHHcC--CcccCEEEEEECCeEE
Confidence             1     27788888887754    555655  678998644  77654

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=97.73  E-value=1.8e-05  Score=60.61  Aligned_cols=47  Identities=15%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      .|+||+++      .|+.|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         4 Mi~iY~~~------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   50 (120)
T 3fz4_A            4 MLTFYEYP------KCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLE   50 (120)
T ss_dssp             SEEEEECS------SCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHH
Confidence            48899999      599999999999999999999999988877788877764

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.70  E-value=1.7e-05  Score=59.13  Aligned_cols=64  Identities=11%  Similarity=0.107  Sum_probs=48.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH--HHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~--~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ..||.|+++|      |++|+++...|++..-.|..+|++.+..  ...++.+.+  +...+|.++++|+...|
T Consensus        14 ~~vV~F~A~W------C~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~--~V~~~PT~~i~G~~~~G   79 (106)
T 3kp8_A           14 IGGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEA--GITSYPTWIINGRTYTG   79 (106)
T ss_dssp             HTCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHT--TCCSSSEEEETTEEEES
T ss_pred             CEEEEEECCC------CHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHc--CCeEeCEEEECCEEecC
Confidence            3589999998      9999999999998877777778774322  223455556  57889999998765544

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.67  E-value=4e-05  Score=53.22  Aligned_cols=67  Identities=18%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeCC
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGD  173 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iGG  173 (251)
                      -.|++|+++|      |++|.++...|++.      ++.+..+|++.+++    +.+..|  ...+|.++++|+  +.|.
T Consensus         3 ~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            3 VNIEVFTSPT------CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYG--LMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCEEEESCSS------SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTC--SSCSSEEEETTTEEEECS
T ss_pred             EEEEEEECCC------CcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhCC--ceeeCEEEECCEEEEccC
Confidence            3578888886      99999988887662      58888999987764    333444  678999999998  6774


Q ss_pred             --hHHHHHH
Q psy15946        174 --ADAIERL  180 (251)
Q Consensus       174 --~d~l~~l  180 (251)
                        .+++.++
T Consensus        71 ~~~~~l~~~   79 (85)
T 1nho_A           71 PSREELFEA   79 (85)
T ss_dssp             SCCHHHHHH
T ss_pred             CCHHHHHHH
Confidence              3455444

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.60  E-value=4.2e-05  Score=56.90  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH--HHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE--TQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~--~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .|+.|.++|      |+.|..+..+|++..-.|..+|++.+..  ...++.+..+  ...+|.++|+|+.+.|......|
T Consensus        15 ~vV~F~A~W------C~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~--V~~~PT~~i~G~~~~G~~~~~~l   86 (106)
T 3kp8_A           15 GGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAG--ITSYPTWIINGRTYTGVRSLEAL   86 (106)
T ss_dssp             TCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTT--CCSSSEEEETTEEEESCCCHHHH
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcC--CeEeCEEEECCEEecCCCCHHHH
Confidence            478888897      9999999999999887788888874322  2345666665  78999999999877665544433

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=97.53  E-value=1.8e-05  Score=60.56  Aligned_cols=47  Identities=11%  Similarity=0.168  Sum_probs=39.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      .|+||+++      +|+.|.+++++|+++|++|+++|+..++..+++|.++.+
T Consensus         5 ~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~   51 (119)
T 3f0i_A            5 SVVIYHNP------KCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQ   51 (119)
T ss_dssp             CCEEECCT------TCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHH
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHH
Confidence            48999999      599999999999999999999999776555666655543

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.47  E-value=4.9e-05  Score=66.92  Aligned_cols=73  Identities=14%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-CH-HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SR-ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~~-~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ...|+.|+.+|      |++|++++.+|++..-++..+|++. |. +...++.+..+  ..++|.+|+||+.+.|..+..
T Consensus       198 ~~~vV~F~A~W------C~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~g--I~~vPT~~i~G~~~~G~~~~~  269 (291)
T 3kp9_A          198 QIGGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAG--ITSYPTWIINGRTYTGVRSLE  269 (291)
T ss_dssp             HTTCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTT--CCSTTEEEETTEEEESCCCHH
T ss_pred             CCCEEEEECCC------CHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcC--CcccCeEEECCEEecCCCCHH
Confidence            44689999998      9999999999999876677777763 22 22455666665  889999999999888866655


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +|.
T Consensus       270 ~L~  272 (291)
T 3kp9_A          270 ALA  272 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.45  E-value=7.6e-05  Score=51.77  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=47.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeCC-
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGD-  173 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iGG-  173 (251)
                      .|++|+++|      |++|.++...|++.      ++.+..+|++.+++    +.+..|  ...+|.++++|+  +.|. 
T Consensus         5 ~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~G~~~~~G~~   72 (85)
T 1fo5_A            5 KIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYG--IMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTT--TCCSSEEEETTEEECCSSS
T ss_pred             EEEEEeCCC------CCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH----HHHHCC--CcccCEEEECCEEeeecCC
Confidence            478888886      99999888887662      57788889877653    233344  678999999998  5563 


Q ss_pred             -hHHHHHH
Q psy15946        174 -ADAIERL  180 (251)
Q Consensus       174 -~d~l~~l  180 (251)
                       .+++.++
T Consensus        73 ~~~~l~~~   80 (85)
T 1fo5_A           73 TKEALVEA   80 (85)
T ss_dssp             SSHHHHHH
T ss_pred             CHHHHHHH
Confidence             3444443

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.38  E-value=5.5e-05  Score=66.59  Aligned_cols=68  Identities=10%  Similarity=0.099  Sum_probs=49.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC-H-HHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS-R-ETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d-~-~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      ....|+.|+++|      ||+|++++.+|++..-.+..+|++.+ . +...++.+..  +..++|+++++|+...|..
T Consensus       197 ~~~~vV~F~A~W------C~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~--gI~~vPT~~i~G~~~~G~~  266 (291)
T 3kp9_A          197 RQIGGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEA--GITSYPTWIINGRTYTGVR  266 (291)
T ss_dssp             HHTTCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTT--TCCSTTEEEETTEEEESCC
T ss_pred             CCCCEEEEECCC------CHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHc--CCcccCeEEECCEEecCCC
Confidence            355799999998      99999999999997655656666632 1 2134455555  5788999999987666643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.31  E-value=0.00014  Score=68.57  Aligned_cols=73  Identities=23%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC-C--
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG-D--  173 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG-G--  173 (251)
                      -.|++|+++|      |++|..+..+|++.     +|.+..+|++..+    ++.+..+  ..++|++|+||+.++ |  
T Consensus       119 ~~i~~f~a~~------C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~----~~~~~~~--i~svPt~~i~g~~~~~G~~  186 (521)
T 1hyu_A          119 FEFETYYSLS------CHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ----NEITERN--VMGVPAVFVNGKEFGQGRM  186 (521)
T ss_dssp             EEEEEEECTT------CSSHHHHHHHHHHHHHHCTTEEEEEEETTTCH----HHHHHTT--CCSSSEEEETTEEEEESCC
T ss_pred             cceEEEECCC------CcCcHHHHHHHHHHHhHcCceEEEEEechhhH----HHHHHhC--CCccCEEEECCEEEecCCC
Confidence            3589999997      99999998887653     4667778887554    4556665  789999999999875 3  


Q ss_pred             -hHHHHHHHHcCCh
Q psy15946        174 -ADAIERLNESGEL  186 (251)
Q Consensus       174 -~d~l~~l~e~G~L  186 (251)
                       .+++.++.+.+.+
T Consensus       187 ~~~~l~~~l~~~~~  200 (521)
T 1hyu_A          187 TLTEIVAKVDTGAE  200 (521)
T ss_dssp             CHHHHHHHHCCSSC
T ss_pred             CHHHHHHHHhhccc
Confidence             2667777666644

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.22  E-value=0.00081  Score=49.37  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=44.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~~g   94 (251)
                      ...|+.|+++|      |++|+++...|++.     ++.+..+|++.+++    +.+.+  +...+|.+++  +|+.+.
T Consensus        20 ~~~vv~f~a~w------C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~~~~G~~v~   86 (110)
T 2l6c_A           20 SDAIVFFHKNL------CPHCKNMEKVLDKFGARAPQVAISSVDSEARPE----LMKEL--GFERVPTLVFIRDGKVAK   86 (110)
T ss_dssp             SEEEEEEECSS------CSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHH----HHHHT--TCCSSCEEEEEESSSEEE
T ss_pred             CCEEEEEECCC------CHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHH----HHHHc--CCcccCEEEEEECCEEEE
Confidence            45788899998      99999999998875     35667777776655    44455  5677999987  666543

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.18  E-value=0.00024  Score=49.91  Aligned_cols=52  Identities=31%  Similarity=0.698  Sum_probs=36.9

Q ss_pred             CCccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        198 ACTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       198 ~~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ....|..|.|.+.      ..|+.|+|+-+++....+-  ....+|+.|+-.|.+   +|+.|
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~--~~~~~C~~C~G~G~~~~~~C~~C   70 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF--AVQQTCPHCQGRGTLIKDPCNKC   70 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTE--EEEEECTTTTTSSEECSSBCGGG
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCC--EEeeECcCCCCccEECCCcCCCC
Confidence            3468889988885      6899999997765322111  124589999988888   78876

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.12  E-value=0.00045  Score=59.38  Aligned_cols=76  Identities=13%  Similarity=0.013  Sum_probs=48.6

Q ss_pred             ccccccCCCeEEEEeecCCC--CCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         16 MTWQEKEAGKIVMYSTTMGI--VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        16 ~~~~~~~~~~vvvyt~~~~~--~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |-+..++|++++||.++.+.  ....||+|.+++-+|+.+|++|+.+.++... ...++.++.  ....+|++..+|..+
T Consensus         9 ~~~~~~~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~n--P~gkVPvL~~~g~~l   85 (267)
T 2ahe_A            9 GLKEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLA--PGTHPPFITFNSEVK   85 (267)
T ss_dssp             -------CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHS--TTCCSCEEEETTEEE
T ss_pred             cccccccCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhC--CCCCCCEEEECCEEe
Confidence            55555678899999322110  1125999999999999999999988876532 124556664  456799999877654


Q ss_pred             c
Q psy15946         94 G   94 (251)
Q Consensus        94 g   94 (251)
                      .
T Consensus        86 ~   86 (267)
T 2ahe_A           86 T   86 (267)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=97.09  E-value=0.00059  Score=57.68  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=43.8

Q ss_pred             CCeEEEE--------eecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMY--------STTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvy--------t~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +..+++|        +.++      ||+|.+++-+|+.+|++|+.+.|+.. ...+++.++.  ....+|++..+|..+.
T Consensus        11 ~~~i~ly~~~~~~~~~~~~------sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~n--P~g~vP~L~~~g~~l~   81 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGN------CPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLA--PGTNPPFLVYNKELKT   81 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCS------CHHHHHHHHHHHHHTCCCEEEEECCC-------------CCSSSCEEEETTEEEC
T ss_pred             CCCEEEEEecCcccccCCC------ChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhC--CCCCCCEEEECCEecc
Confidence            5679999        6664      99999999999999999999888754 2234555554  4567999987776543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.07  E-value=0.0008  Score=57.12  Aligned_cols=56  Identities=14%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      ..|++|+++|      |++|.++...|++          .+|.+..+|++.+++    +.+.+  +..++|+++++|+
T Consensus       140 ~~vv~F~a~w------C~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~----~~~~~--~V~~vPt~~i~G~  205 (243)
T 2hls_A          140 VHIETIITPS------CPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD----IADKY--GVMSVPSIAINGY  205 (243)
T ss_dssp             EEEEEEECSS------CSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH----HHHHT--TCCSSSEEEETTE
T ss_pred             cEEEEEECCC------CCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH----HHHHc--CCeeeCeEEECCE
Confidence            3577899998      9999999999876          357888889888765    33445  5678999999654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0007  Score=50.22  Aligned_cols=52  Identities=23%  Similarity=0.597  Sum_probs=37.2

Q ss_pred             CCccccccCCcc------eeeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        198 ACTICQVCGGYR------LLPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       198 ~~~~C~~Cgg~~------~~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ....|..|.|.+      ...|+.|+|+-.+....++-  .....|+.|+-.|.+   +|+.|
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~--~~~~~C~~C~G~G~~i~~~C~~C   87 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPF--VMRSTCRRCGGRGSIIISPCVVC   87 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTE--EEEEECSSSSSSSEECSSCCSSS
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCE--EEEEECCcCCCcceECCCcCCCC
Confidence            357899999887      47899999997654322211  135689999888877   78877

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.94  E-value=0.0016  Score=44.16  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +|.+|+ +|      |++|+++...|++    ++..+....|+ ++    ++.+.+  +..++|.++++|+.
T Consensus         3 ~v~f~a-~w------C~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~----~~~~~~--~v~~~Pt~~~~G~~   60 (77)
T 1ilo_A            3 KIQIYG-TG------CANCQMLEKNAREAVKELGIDAEFEKIK-EM----DQILEA--GLTALPGLAVDGEL   60 (77)
T ss_dssp             EEEEEC-SS------SSTTHHHHHHHHHHHHHTTCCEEEEEEC-SH----HHHHHH--TCSSSSCEEETTEE
T ss_pred             EEEEEc-CC------ChhHHHHHHHHHHHHHHcCCceEEEEec-CH----HHHHHC--CCCcCCEEEECCEE
Confidence            566666 57      9999998887665    44455555665 33    344455  57789999997764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.94  E-value=0.00028  Score=66.53  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ...|++|+++|      |++|+.+..+|++.     ++.+..+|++..++    +.+.+  +..++|+++++|+.+
T Consensus       118 ~~~i~~f~a~~------C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~----~~~~~--~i~svPt~~i~g~~~  181 (521)
T 1hyu_A          118 DFEFETYYSLS------CHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITER--NVMGVPAVFVNGKEF  181 (521)
T ss_dssp             CEEEEEEECTT------CSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHT--TCCSSSEEEETTEEE
T ss_pred             CcceEEEECCC------CcCcHHHHHHHHHHHhHcCceEEEEEechhhHH----HHHHh--CCCccCEEEECCEEE
Confidence            34799999998      99999998888764     35667777776555    55555  578899999999765

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=96.89  E-value=0.001  Score=54.71  Aligned_cols=62  Identities=11%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGT   95 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~gG   95 (251)
                      ++++||+.++      ||+|.+++-+|+.+|++|+.++|+.....  ...++.  ...++|++. .+|..+..
T Consensus         2 ~~~~Ly~~~~------sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~--p~~~vP~l~~~~g~~l~e   64 (218)
T 3ir4_A            2 NAMKLYIYDH------CPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMI--GQKMVPILQKDDSRYLPE   64 (218)
T ss_dssp             CCCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHH--SSSCSCEEECTTSCEEEC
T ss_pred             CeEEEEcCCC------CchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcC--CCceeeeEEEeCCeEeeC
Confidence            4689999996      99999999999999999999988765431  234555  567899998 66665443

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=96.87  E-value=0.00083  Score=54.97  Aligned_cols=62  Identities=13%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |..+++|+.+.      ||+|++|+-+|+.+|++|+.+.|+.... -+++.++.  ....||++..+|..+
T Consensus         1 M~Mm~LY~~~~------sP~~~rvr~~L~e~gi~~e~~~v~~~~~-~~~~~~~n--P~g~vPvL~~~~~~l   62 (210)
T 4hoj_A            1 MVMMTLYSGIT------CPFSHRCRFVLYEKGMDFEIKDIDIYNK-PEDLAVMN--PYNQVPVLVERDLVL   62 (210)
T ss_dssp             ---CEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHC--TTCCSCEEEETTEEE
T ss_pred             CceEEEecCCC------ChHHHHHHHHHHHcCCCCEEEEeCCCCC-CHHHHHHC--CCCCCcEEEECCEEE
Confidence            34579999995      9999999999999999999887754321 24566664  456799998777654

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=96.85  E-value=0.0021  Score=52.18  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=49.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.+.  ..++++..|+....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~~~P~g~vP~L~~~g~~l~   64 (207)
T 1zl9_A            1 MVSYKLTYFNG------RGAGEVSRQIFAYAGQQYEDNRVTQEQ--WPALKETCAAPFGQLPFLEVDGKKLA   64 (207)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHHHTTCSTTSCSCEEEETTEEEE
T ss_pred             CCceEEEEcCC------CchHHHHHHHHHHcCCCceEEEecHHH--HHHHhhccCCCCCCCCEEEECCEEEe
Confidence            56789999996      999999999999999999999887532  36676663224568999987765543

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=96.82  E-value=0.0012  Score=55.53  Aligned_cols=69  Identities=9%  Similarity=0.017  Sum_probs=49.9

Q ss_pred             CCCeEEEEeecCC--CCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         22 EAGKIVMYSTTMG--IVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        22 ~~~~vvvyt~~~~--~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +|..+++|.++.+  .+...||+|.+++-+|+.+|++|+.+.|+.. ...+++.++.  ....||++..+|..+
T Consensus         4 ~~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l   74 (241)
T 1k0m_A            4 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLC--PGGELPFLLYGTEVH   74 (241)
T ss_dssp             --CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHC--TTCCSSEEEETTEEE
T ss_pred             CCCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhC--CCCCCCEEEECCEEe
Confidence            4678999998832  2334799999999999999999998888653 2234566654  456799998766554

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.81  E-value=0.0032  Score=46.08  Aligned_cols=58  Identities=21%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeeeC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHIG  172 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~iG  172 (251)
                      -++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+.
T Consensus        22 ~vv~f~a~w------C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~v~   86 (110)
T 2l6c_A           22 AIVFFHKNL------CPHCKNMEKVLDKFGARAPQVAISSVDSEARPE----LMKELG--FERVPTLVFIRDGKVAK   86 (110)
T ss_dssp             EEEEEECSS------CSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHH----HHHHTT--CCSSCEEEEEESSSEEE
T ss_pred             EEEEEECCC------CHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHH----HHHHcC--CcccCEEEEEECCEEEE
Confidence            366777786      99999999888765     35677778866544    555555  778999887  887665

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=96.81  E-value=0.0017  Score=53.37  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIERL  180 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~l  180 (251)
                      +++++|+...      |++|.+++-+|+..|++|+.++++.....  ...++.+  ..++|.+. .+|..+.+...+.+.
T Consensus         2 ~~~~Ly~~~~------sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p--~~~vP~l~~~~g~~l~eS~aI~~y   71 (218)
T 3ir4_A            2 NAMKLYIYDH------CPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIG--QKMVPILQKDDSRYLPESMDIVHY   71 (218)
T ss_dssp             CCCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHS--SSCSCEEECTTSCEEECHHHHHHH
T ss_pred             CeEEEEcCCC------CchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCC--CceeeeEEEeCCeEeeCHHHHHHH
Confidence            4578999884      99999999999999999999988764321  2345654  78999999 889999888877765


Q ss_pred             HHc
Q psy15946        181 NES  183 (251)
Q Consensus       181 ~e~  183 (251)
                      .++
T Consensus        72 L~~   74 (218)
T 3ir4_A           72 VDN   74 (218)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.78  E-value=0.0021  Score=47.53  Aligned_cols=54  Identities=19%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        31 k~vvv~F~a~w------C~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   89 (114)
T 2oe3_A           31 DKLVIDFYATW------CGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPD----IAKEC--EVTAMPTFVL   89 (114)
T ss_dssp             SEEEEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSBSEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHC--CCCcccEEEE
Confidence            45688889997      99999999888764     57888889888766    44445  4667899876

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=96.77  E-value=0.0014  Score=53.72  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ..+++|+.+.      ||+|.+++-+|+.+|++|+.+.++.+. ...++.++.  ....+|++..+|..+.
T Consensus         9 ~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~~--P~g~vP~L~~~g~~l~   70 (213)
T 1yy7_A            9 SVMTLFSGPT------DIFSHQVRIVLAEKGVSVEIEQVEADN-LPQDLIDLN--PYRTVPTLVDRELTLY   70 (213)
T ss_dssp             SSEEEEECTT------CHHHHHHHHHHHHHTCCEEEEECCTTS-CCHHHHHHC--TTCCSSEEEETTEEEE
T ss_pred             CceEEEcCCC------ChhHHHHHHHHHHcCCCCeEEeCCccc-CcHHHHHHC--CCCCCCEEEECCEEEe
Confidence            3689999996      999999999999999999998887532 224566664  4567999987665543

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=96.75  E-value=0.0016  Score=52.90  Aligned_cols=64  Identities=9%  Similarity=0.132  Sum_probs=48.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.. +...+++++.  ....+|++..+|..+..
T Consensus         1 M~~~~Ly~~~~------s~~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~g~~l~e   64 (208)
T 1yq1_A            1 MPSYKLTYFFF------RGLGEPIRLLFHLAGVQFEEVRMNPD-QTWLDIKDST--PMKQLPVLNIDGFELPQ   64 (208)
T ss_dssp             CCCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEECTT-TCCHHHHHTS--TTSCSCEEEESSCEECC
T ss_pred             CCceEEEEeCC------CCchHHHHHHHHHcCCCeEEEEeccc-chhhhhhccC--CCCCCCEEEECCEEEee
Confidence            46789999996      99999999999999999999888731 1124555554  45679999887765443

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=96.74  E-value=0.0018  Score=53.83  Aligned_cols=64  Identities=9%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCC-CCCCceeeeccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~-~~vP~i~i~g~~~g   94 (251)
                      +|+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.. ....++.++.  .. ..+|++..+|..+.
T Consensus         3 ~~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vP~L~~~g~~l~   67 (231)
T 1oyj_A            3 EEKELVLLDFWV------SPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSN--PVHRKIPVLLHAGRPVS   67 (231)
T ss_dssp             CSCCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHS--TTTCCSCEEEETTEEEE
T ss_pred             CCCceEEEeCCC------ChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhC--CCCCCCCEEEECCEEEe
Confidence            467899999996      99999999999999999998887643 1224455554  23 47999987765543

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=96.73  E-value=0.0026  Score=54.57  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             ccchheeeeeeeccc--ccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHH
Q psy15946         99 KEAGKIVMYSTTMGI--VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~--ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      ..+..++||.+....  ....|++|.+++-+|+..||+|+.+.++... ...++.++..  ...+|.+..+|..|.....
T Consensus        14 ~~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP--~gkVPvL~~~g~~l~ES~a   90 (267)
T 2ahe_A           14 DKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAP--GTHPPFITFNSEVKTDVNK   90 (267)
T ss_dssp             --CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHST--TCCSCEEEETTEEECCHHH
T ss_pred             ccCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCC--CCCCCEEEECCEEecCHHH
Confidence            346679999322110  1126999999999999999999998886531 2345566653  6799999999999998887


Q ss_pred             HHHHHH
Q psy15946        177 IERLNE  182 (251)
Q Consensus       177 l~~l~e  182 (251)
                      +.+..+
T Consensus        91 I~~YL~   96 (267)
T 2ahe_A           91 IEEFLE   96 (267)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777543

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=96.73  E-value=0.002  Score=54.46  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=45.0

Q ss_pred             CCeEEEEeecCCC--CCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         23 AGKIVMYSTTMGI--VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        23 ~~~vvvyt~~~~~--~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      .+.|.||.++.+.  +...||+|.+++-+|+.+|++|+.+.|+.. ....++.++.  ....+|++..+|..+..
T Consensus        23 ~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~n--P~g~VPvL~~dg~~l~E   94 (250)
T 3fy7_A           23 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFA--PGSQLPILLYDSDAKTD   94 (250)
T ss_dssp             --CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC-----------------CCSCEEEETTEEECC
T ss_pred             CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhC--CCCCCCEEEECCEEecC
Confidence            3589999987654  335799999999999999999998888754 2234566554  45679999987765433

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=96.70  E-value=0.0015  Score=54.05  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |.+.|||+.+.      ||+|++|+-+|+.+|++|+.+.|+.  ......++.++.  ....||++..+|..+
T Consensus         1 M~kpiLY~~~~------Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~~~~l   65 (228)
T 4hi7_A            1 MVKPILYGIDA------SPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKN--PQHTVPLLEDGDANI   65 (228)
T ss_dssp             --CCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHC--TTCCSCEEEETTEEE
T ss_pred             CCceEEEECCC------ChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhC--CCCceeeEEECCEEE
Confidence            45668999996      9999999999999999998876654  333345677664  356799998876654

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=96.68  E-value=0.0024  Score=51.66  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.  +...+++++.  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~--P~g~vP~L~~~g~~l~   62 (206)
T 2on7_A            1 MVHYKLTYFAI------RGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDL--PFGQVPVLEVDGKQLA   62 (206)
T ss_dssp             CCCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGS--SSSCSCEEEETTEEEE
T ss_pred             CCceEEEEcCC------CcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCC--CCCCCCEEEECCEEEe
Confidence            45789999996      9999999999999999999988874  2234555554  4567999987765543

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=96.66  E-value=0.0041  Score=51.19  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=57.5

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH----HHHHHHHHHhCCCCCCCceEEECCeeeCChH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR----ETQQEFKERLGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~----~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      .++++++|+..      .|++|.+++-+|+..|++|+.+.++...    ....++.+...  ...+|.+..+|..|.+..
T Consensus         9 ~~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP--~g~vP~L~~~g~~l~eS~   80 (223)
T 2cz2_A            9 QAGKPILYSYF------RSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNP--MKQVPALKIDGITIVQSL   80 (223)
T ss_dssp             --CCCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCT--TCCSCEEEETTEEEESHH
T ss_pred             ccCceEEEecC------CCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCC--CCCCCEEEECCEEEeeHH
Confidence            34578999877      4999999999999999999999887543    23456666653  679999999999888877


Q ss_pred             HHHHHH
Q psy15946        176 AIERLN  181 (251)
Q Consensus       176 ~l~~l~  181 (251)
                      .+.+..
T Consensus        81 aI~~yL   86 (223)
T 2cz2_A           81 AIMEYL   86 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.64  E-value=0.0049  Score=43.79  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|+++...|++.     ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        20 ~~~~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   78 (104)
T 2vim_A           20 RLIVVDFFAQW------CGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE----AAAKY--SVTAMPTFVF   78 (104)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHH----HHHHc--CCccccEEEE
Confidence            44677788997      99999999888763     67888888887765    34445  4667999876

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.64  E-value=0.0046  Score=44.77  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=40.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|+++...|++.      ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        24 ~~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   84 (112)
T 1ep7_A           24 HKPIVVDFTATW------CGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAA--GITAMPTFHV   84 (112)
T ss_dssp             TCCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHH--TCCBSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH----HHHHc--CCCcccEEEE
Confidence            345788899997      99999998887763      46777778877665    34445  4667999876

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=96.64  E-value=0.0023  Score=52.17  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHH-----HhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKE-----RLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~-----~~g~g~~~vP~i~i~g~~~   93 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...+...++++     +.  ....+|++..+|..+
T Consensus         2 m~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l   69 (211)
T 1okt_A            2 GDNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDT--PFEQVPILQIGDLIL   69 (211)
T ss_dssp             CCCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCC--SSSCSCEEEETTEEE
T ss_pred             CCccEEEEECC------CchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccC--CCCCCCEEEECCEEe
Confidence            46789999996      99999999999999999999888532223455555     33  456799998766544

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.005  Score=44.71  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++       .++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 ~~~~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   82 (112)
T 3d6i_A           21 DKLIVLYFHTSW------AEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE----ISELF--EISAVPYFII   82 (112)
T ss_dssp             TCCEEEEEECCC--------CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH----HHHHc--CCCcccEEEE
Confidence            345788899998      9999999888774       247788888887765    44445  4677999876

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=96.63  E-value=0.0024  Score=52.70  Aligned_cols=64  Identities=20%  Similarity=0.323  Sum_probs=49.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH----HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR----ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~----~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...    ....++.++.  ....+|++..+|..+.
T Consensus        10 ~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~n--P~g~vP~L~~~g~~l~   77 (223)
T 2cz2_A           10 AGKPILYSYFR------SSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLN--PMKQVPALKIDGITIV   77 (223)
T ss_dssp             -CCCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHC--TTCCSCEEEETTEEEE
T ss_pred             cCceEEEecCC------CChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccC--CCCCCCEEEECCEEEe
Confidence            34789999985      999999999999999999999887643    2345666664  4568999987665543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.62  E-value=0.0047  Score=45.37  Aligned_cols=54  Identities=15%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.    ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        34 ~~~vv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   91 (117)
T 2xc2_A           34 KLVVVDFFATW------CGPCKTIAPLFKELSEKYDAIFVKVDVDKLEE----TARKY--NISAMPTFIA   91 (117)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHTTSSSEEEEEETTTSHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEEECCC------CHhHHHHhHHHHHHHHHcCcEEEEEECCccHH----HHHHc--CCCccceEEE
Confidence            45678889997      99999999888874    56677777776655    44455  4677999876

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=96.62  E-value=0.0017  Score=55.56  Aligned_cols=63  Identities=13%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHH-HHHhCCCCCCCCceee-ecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEF-KERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el-~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      .+.++||+.+.      ||+|++++-+|+.+||+|+.+.|+.....-+.+ .++.  ....||++.+ +|..+
T Consensus         4 p~~~~LY~~~~------sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~n--P~g~VPvL~~d~g~~l   68 (265)
T 4g10_A            4 PQELTIYHIPG------CPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTG--GTTALPLLDVENGESL   68 (265)
T ss_dssp             CCCCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHT--SCCCSCEEECTTSCEE
T ss_pred             CCceEEEecCC------ChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcC--CCCccceEEECCCeEE
Confidence            34789999996      999999999999999999988775432111223 3343  4567999976 44443

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.61  E-value=0.0062  Score=43.49  Aligned_cols=54  Identities=13%  Similarity=0.265  Sum_probs=40.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...++.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        18 ~~~~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   77 (105)
T 1nsw_A           18 GPVLVDFWAAW------CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE----TTSQF--GIMSIPTLIL   77 (105)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CcEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH----HHHHc--CCccccEEEE
Confidence            45788889997      99999998877752      36777888887765    44455  4677999976

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.60  E-value=0.0053  Score=43.79  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....++.|+++|      |++|+++...|++.     ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        20 ~~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   79 (105)
T 3m9j_A           20 DKLVVVDFSATW------CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASES--EVKSMPTFQF   79 (105)
T ss_dssp             TSCEEEEEECTT------CHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHH----HHHHT--TCCBSSEEEE
T ss_pred             CCeEEEEEECCC------ChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHH----HHHHc--CCCcCcEEEE
Confidence            345788899997      99999999988873     57788888887766    44445  4677999876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=96.59  E-value=0.0061  Score=45.91  Aligned_cols=57  Identities=12%  Similarity=0.019  Sum_probs=45.8

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeeccCCHHHHHHHHHHhCCCCC-CCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERLGTDVI-NVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv~~d~~~~~el~~~~g~g~~-~vP~i~i   88 (251)
                      +-|+.|.++|      |+.|+.+...|++.    .++|..+||+...+.-.++.+.+  +.. ..|++++
T Consensus        26 ~vvi~khatw------Cgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~--~V~h~sPq~il   87 (112)
T 3iv4_A           26 YVFVLKHSET------CPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKT--NVKHESPQAFY   87 (112)
T ss_dssp             EEEEEEECTT------CHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHH--TCCCCSSEEEE
T ss_pred             CEEEEEECCc------CHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHh--CCccCCCeEEE
Confidence            3455555666      99999998887765    69999999999988888888888  466 4899975

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.58  E-value=0.0044  Score=44.27  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|+.+...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        19 ~~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   78 (109)
T 2yzu_A           19 PLVLVDFWAEW------CAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK----TAMRY--RVMSIPTVIL   78 (109)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh----HHHhC--CCCcCCEEEE
Confidence            45788888897      99999998887763      46777888887765    44455  4677999977

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.58  E-value=0.0049  Score=44.96  Aligned_cols=55  Identities=15%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|.++...|++.     ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        28 ~~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   87 (118)
T 2vm1_A           28 GKLVIIDFTASW------CGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKD----VAEAY--NVEAMPTFLF   87 (118)
T ss_dssp             TCCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHT--TCCSBSEEEE
T ss_pred             CCEEEEEEECCC------CHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHH----HHHHc--CCCcCcEEEE
Confidence            345788889997      99999998888763     57777888877665    44445  4677999876

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=96.58  E-value=0.0023  Score=51.76  Aligned_cols=62  Identities=16%  Similarity=0.107  Sum_probs=47.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.  +...+++++.  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~--P~g~vP~L~~~g~~l~   62 (206)
T 1tw9_A            1 MVHYKLTYFNG------RGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATF--PFGQVPVLEVDGQQLA   62 (206)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGS--TTSCSCEEEETTEEEE
T ss_pred             CCceEEEEcCC------CccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccC--CCCCCCEEEECCEEEe
Confidence            56789999996      9999999999999999999988873  2234455443  4567999987765543

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=96.56  E-value=0.0018  Score=52.39  Aligned_cols=62  Identities=11%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.+.  ..++++..  ....+|++..+|..+.
T Consensus         1 m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~--P~g~vP~L~~~g~~l~   62 (206)
T 2on5_A            1 MVHYKLTYFAG------RGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEM--PFGQIPVLEEDGKQLA   62 (206)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGS--TTSCSCEEEETTEEEE
T ss_pred             CCceEEEecCC------CcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCC--CCCCCCEEEECCEEEe
Confidence            56789999996      999999999999999999998887532  24455443  4567999987765543

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=96.56  E-value=0.0049  Score=51.90  Aligned_cols=73  Identities=25%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             chheeee--------eeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        101 AGKIVMY--------STTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       101 ~~~Vviy--------t~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      +..+++|        +..      .|++|.+++-+|+..|++|+.+.++.. ....++.+..  +...+|.+..+|..|.
T Consensus        11 ~~~i~ly~~~~~~~~~~~------~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~n--P~g~vP~L~~~g~~l~   81 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIG------NCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLA--PGTNPPFLVYNKELKT   81 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBC------SCHHHHHHHHHHHHHTCCCEEEEECCC-------------CCSSSCEEEETTEEEC
T ss_pred             CCCEEEEEecCcccccCC------CChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhC--CCCCCCEEEECCEecc
Confidence            3458889        444      599999999999999999999888654 2234555554  3679999999999998


Q ss_pred             ChHHHHHHHH
Q psy15946        173 DADAIERLNE  182 (251)
Q Consensus       173 G~d~l~~l~e  182 (251)
                      ....+.+..+
T Consensus        82 ES~aI~~YL~   91 (247)
T 2r4v_A           82 DFIKIEEFLE   91 (247)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8887776543

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=96.54  E-value=0.0012  Score=57.19  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      ++..++||+.++      ||+|.+++-+|+.+|++|+.++|+...  ..++ ++.  +..++|++.+++
T Consensus        11 ~~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~--p~~~vP~l~~~~   68 (290)
T 1z9h_A           11 SRLQLTLYQYKT------CPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFS--SYRKVPILVAQE   68 (290)
T ss_dssp             --CEEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTC--SCCSSCEEEEEE
T ss_pred             CCCCEEEEeCCC------ChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHc--CCCCCCEEEECC
Confidence            345799999996      999999999999999999999986321  1223 233  567899998753

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.54  E-value=0.0055  Score=44.69  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=41.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        26 ~k~vlv~f~a~~------C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   85 (112)
T 1syr_A           26 NELVIVDFFAEW------CGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKE--NITSMPTFKV   85 (112)
T ss_dssp             CSEEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHT--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHH----HHHHc--CCCcccEEEE
Confidence            345677888997      99999999888762     57788888887765    44445  4677998876

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=96.52  E-value=0.0033  Score=51.25  Aligned_cols=64  Identities=9%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |.++++|+.+.      |++|.+++-+|+..|++|+.+.++.......++++..  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   64 (210)
T 2a2r_A            1 MPPYTVVYFPV------RGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASC--LYGQLPKFQDGDLTLY   64 (210)
T ss_dssp             CCSEEEEECSS------SGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHS--TTSCSCEEEETTEEEE
T ss_pred             CCceEEEEeCC------cchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCC--CCCCCCEEEECCEEEe
Confidence            45689999995      9999999999999999999988875322223566654  4567999987665543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.51  E-value=0.0073  Score=43.49  Aligned_cols=55  Identities=13%  Similarity=0.204  Sum_probs=42.0

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 ~~~v~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   80 (107)
T 1gh2_A           21 SRLAVVKFTMRG------CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATN--NISATPTFQF   80 (107)
T ss_dssp             TSCEEEEEECSS------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------ChhhHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHhc--CCCcccEEEE
Confidence            345788899998      99999999888763     57788888887765    44445  4677998865

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.51  E-value=0.0043  Score=46.54  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=40.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        39 k~vvv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~   97 (124)
T 1xfl_A           39 TLVVVDFTASW------CGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDW--AIQAMPTFMF   97 (124)
T ss_dssp             CEEEEEEECTT------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHHc--CCCccCEEEE
Confidence            34677788887      99999998888763     46777778877665    44455  4677999876

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.50  E-value=0.0056  Score=47.59  Aligned_cols=55  Identities=15%  Similarity=0.286  Sum_probs=42.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        32 ~~~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   91 (153)
T 2wz9_A           32 KSLLVVHFWAPW------APQCAQMNEVMAELAKELPQVSFVKLEAEGVPE----VSEKY--EISSVPTFLF   91 (153)
T ss_dssp             TSCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHT--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHH----HHHHc--CCCCCCEEEE
Confidence            345788899998      99999998888764     68888889888765    44445  4677999976

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=96.49  E-value=0.0028  Score=51.76  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=40.5

Q ss_pred             CCeEEEEeec--CCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTT--MGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~--~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |+++++|+.+  +      ||+|.+++-+|+.+|++|+.+.|+...  ....++.++.  ....+|++..+|..+
T Consensus         4 ~~~~~Ly~~~~~~------s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l   70 (215)
T 3bby_A            4 KPAITLWSDAHFF------SPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYG--QTRRVPLLQIDDFEL   70 (215)
T ss_dssp             CCCEEEEEETTSC------CHHHHHHHHHHHHHTCCCEEEEEC--------------------CCCEEEETTEEE
T ss_pred             CCCEEEEecCCCC------CcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhC--CCCCCCEEEeCCeEe
Confidence            4579999986  5      999999999999999999988876532  2234555554  345799998766544

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.49  E-value=0.0052  Score=46.33  Aligned_cols=55  Identities=15%  Similarity=0.317  Sum_probs=42.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        37 ~k~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~i   96 (125)
T 1r26_A           37 DILTVAWFTAVW------CGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKC--RVLQLPTFII   96 (125)
T ss_dssp             SSCEEEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCc------CHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHc--CCCcccEEEE
Confidence            456788899997      99999998887763     58888889987766    44445  4677999877

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.49  E-value=0.0062  Score=42.98  Aligned_cols=54  Identities=17%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.     ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        17 ~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   75 (104)
T 2e0q_A           17 EIAVVDFWAEW------CAPCLILAPIIEELAEDYPQVGFGKLNSDENPD----IAARY--GVMSLPTVIF   75 (104)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSCEEEE
T ss_pred             CcEEEEEECCC------ChhHHHHhHHHHHHHHHcCCceEEEEECCCCHH----HHHhC--CccccCEEEE
Confidence            45778888887      99999998887762     47788888887765    44445  4667999987

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.48  E-value=0.0095  Score=42.62  Aligned_cols=55  Identities=13%  Similarity=0.172  Sum_probs=40.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|+++...|++.      .+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        19 ~~~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~--~v~~~Pt~~~   79 (107)
T 1dby_A           19 SVPVLVDFWAPW------CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV----ASEY--GIRSIPTIMV   79 (107)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHH--TCCSSCEEEE
T ss_pred             CCcEEEEEECCC------CHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC--CCCcCCEEEE
Confidence            345788889997      99999998887762      367777888877653    3445  4667999876

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.47  E-value=0.0083  Score=43.42  Aligned_cols=54  Identities=11%  Similarity=0.190  Sum_probs=40.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|++....|++    +  .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        24 ~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   83 (112)
T 1t00_A           24 KPVLVDFWAAW------CGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG----TAAKY--GVMSIPTLNV   83 (112)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH----HHHhC--CCCcccEEEE
Confidence            45688889997      9999998877765    2  36777888887765    34445  4667999876

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=96.47  E-value=0.0097  Score=43.78  Aligned_cols=58  Identities=14%  Similarity=0.121  Sum_probs=41.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++    +++.+..+|++...  +...++.+.+  +...+|++++
T Consensus        30 ~~~~v~f~a~w------C~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~i~~~Pt~~~   93 (118)
T 1zma_A           30 ETATFFIGRKT------CPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRY--GIPTVPGFVH   93 (118)
T ss_dssp             CCEEEEEECTT------CHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHH--TCCSSCEEEE
T ss_pred             CeEEEEEECCC------CccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHc--CCCCCCeEEE
Confidence            45788899998      9999998666554    45677777776543  4445666667  5778999864

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=96.47  E-value=0.0023  Score=51.75  Aligned_cols=62  Identities=10%  Similarity=0.073  Sum_probs=47.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.+.  ..+++++.  ....+|++..+|..+.
T Consensus         1 m~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~--P~g~vP~L~~~g~~l~   62 (204)
T 2ws2_A            1 MVHYKLTYFNG------RGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASM--PFGQLPVLEVDGKQLP   62 (204)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGS--TTSCSCEEEETTEEEE
T ss_pred             CCccEEEEeCC------CchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcC--CCCCCCEEEECCEEee
Confidence            46789999996      999999999999999999998887532  24455544  4567999987665443

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=96.46  E-value=0.0037  Score=52.34  Aligned_cols=66  Identities=21%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ..+.++++|..+.      ||+|.+++-+|+.+|++|+.+.|+..  .....++.++.  ....+|++..+|..+.
T Consensus        22 s~~~~~~Ly~~~~------sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vPvL~~~g~~l~   89 (243)
T 3qav_A           22 ATTSKPFVYWGSG------SPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELN--PRGQVPTFTDGDVVVN   89 (243)
T ss_dssp             ---CCCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHC--TTCCSCEEEETTEEEC
T ss_pred             cccCccEEEeCCC------CcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCEEEECCEEEe
Confidence            3456899999996      99999999999999999998877643  23345677665  4567999987775543

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=96.46  E-value=0.003  Score=48.10  Aligned_cols=53  Identities=17%  Similarity=0.396  Sum_probs=39.9

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcC----CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-|+.|+++|      |++|+++...|++..    +.|..+|++.+.+    +.+.+  +...+|.+++
T Consensus        42 ~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   98 (133)
T 3cxg_A           42 SIVIKFGAVW------CKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPK----LNDQH--NIKALPTFEF   98 (133)
T ss_dssp             EEEEEEECTT------CHHHHHTHHHHHGGGGTEECEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             EEEEEEECCC------CHHHHHHHHHHHHHHHhcCEEEEEEeccchHH----HHHhc--CCCCCCEEEE
Confidence            4678889998      999999999988753    5666777776655    44455  4677999865

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.44  E-value=0.0098  Score=43.01  Aligned_cols=55  Identities=13%  Similarity=0.185  Sum_probs=41.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        25 ~~~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   85 (115)
T 1thx_A           25 EQPVLVYFWASW------CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKY--KVEGVPALRL   85 (115)
T ss_dssp             SSCEEEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CceEEEEEECCC------CHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH----HHHHc--CCCceeEEEE
Confidence            345788889997      99999998887762      37788888887765    44455  4677999977

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.44  E-value=0.0081  Score=44.40  Aligned_cols=54  Identities=15%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        32 k~vlv~f~a~~------C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~   91 (119)
T 1w4v_A           32 TPVVVDFHAQW------CGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD----LAIEY--EVSAVPTVLA   91 (119)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH----HHHHT--TCCSSSEEEE
T ss_pred             CcEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHc--CCCcccEEEE
Confidence            45788888997      99999998877752      46777888887765    44445  4677999977

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.42  E-value=0.005  Score=44.01  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=42.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH   92 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~   92 (251)
                      ...-|+.|+++|      |++|+++...|++.      ++.+..+|++.+++    +.+.+  +...+|.+++  +|+.
T Consensus        20 ~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~~~~G~~   86 (107)
T 2i4a_A           20 SGLVLVDFWAEW------CGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE----TPNAY--QVRSIPTLMLVRDGKV   86 (107)
T ss_dssp             SSEEEEEEECTT------CHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH----HHHHT--TCCSSSEEEEEETTEE
T ss_pred             CCEEEEEEECCC------ChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH----HHHhc--CCCccCEEEEEeCCEE
Confidence            345678888887      99999998887762      46778888887765    34445  4677999877  4443

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.42  E-value=0.0097  Score=42.28  Aligned_cols=55  Identities=7%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH----c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|+.+...|++    +  .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        18 ~~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   78 (105)
T 1fb6_A           18 EVPVMVDFWAPW------CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQY--NIRSIPTVLF   78 (105)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------ChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH----HHHhC--CCCcccEEEE
Confidence            345788899997      9999999888765    2  36677778877765    44445  4667999877

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.41  E-value=0.0085  Score=43.13  Aligned_cols=55  Identities=29%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+.+...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        22 ~~~vlv~f~a~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   82 (111)
T 3gnj_A           22 GKACLVMFSRKN------CHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT----LFQRF--SLKGVPQILY   82 (111)
T ss_dssp             CCCEEEEEECSS------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHT--TCCSSCEEEE
T ss_pred             CCEEEEEEeCCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh----HHHhc--CCCcCCEEEE
Confidence            356788899997      99999999888763      37778888887775    44455  4677998865

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.41  E-value=0.0064  Score=43.33  Aligned_cols=54  Identities=13%  Similarity=0.128  Sum_probs=39.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...|+.|+++|      |++|+++...|++      .++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 ~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   80 (106)
T 1xwb_A           21 KLVVLDFFATW------CGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEY--NISSMPTFVF   80 (106)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEEECCc------CHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH----HHHHc--CCCcccEEEE
Confidence            45677888887      9999998887776      246777778877665    44445  4677999876

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.41  E-value=0.0085  Score=44.15  Aligned_cols=55  Identities=13%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        34 ~~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   93 (122)
T 2vlu_A           34 KKLVVIDFTASW------CGPCRIMAPVFADLAKKFPNAVFLKVDVDELKP----IAEQF--SVEAMPTFLF   93 (122)
T ss_dssp             TCCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHH----HHHHc--CCCcccEEEE
Confidence            345788899997      99999998888762     47778888887765    34445  4677999876

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=96.40  E-value=0.0034  Score=51.49  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=48.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|+.++      ||+|.+++-+|+..|++|+.+.|+... ..+++.++.  ....+|++..+|..+.
T Consensus         6 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~~--P~g~vP~L~~~g~~l~   66 (216)
T 3lyk_A            6 VMTLFSNKD------DIYCHQVKIVLAEKGVLYENAEVDLQA-LPEDLMELN--PYGTVPTLVDRDLVLF   66 (216)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHC--TTCCSCEEEETTEEEE
T ss_pred             eEEEEeCCC------ChhHHHHHHHHHHcCCCcEEEeCCccc-CcHHHHhhC--CCCCcCeEEECCeEec
Confidence            589999996      999999999999999999998887542 234566664  4567999987766543

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=96.39  E-value=0.0028  Score=51.85  Aligned_cols=61  Identities=15%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.. ...+++.++.  ....+|++..+|..+.
T Consensus         8 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~g~~l~   68 (215)
T 3lyp_A            8 RLACYSDPA------DHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVN--PYGSLPTLVDRDLALW   68 (215)
T ss_dssp             CCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHC--TTCCSSEEECC-CEEE
T ss_pred             CeEEEeCCC------CchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHC--CCCCcCeEEECCEEee
Confidence            789999996      99999999999999999999888654 2235566665  4567999987765543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.39  E-value=0.0049  Score=44.58  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|.++...|++.     ++.|..+|++.+++..+    .+  +...+|.+++
T Consensus        27 ~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~--~v~~~Pt~~~   85 (113)
T 1ti3_A           27 KLIVVDFTASW------CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAE----EW--NVEAMPTFIF   85 (113)
T ss_dssp             SEEEEEEECSS------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHH----HH--HCSSTTEEEE
T ss_pred             CeEEEEEECCC------CHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHH----hC--CCCcccEEEE
Confidence            34567788887      99999998877763     57778888887766433    33  3556899876

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.39  E-value=0.0097  Score=43.32  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=41.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        24 ~k~vlv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   83 (109)
T 3f3q_A           24 DKLVVVDFYATW------CGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD----VAQKN--EVSAMPTLLL   83 (109)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCc------CHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHc--CCCccCEEEE
Confidence            345677789998      99999999888763     57778888887766    44445  5677999876

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=96.39  E-value=0.004  Score=51.08  Aligned_cols=64  Identities=19%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++++|+.+.      |++|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         6 ~~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   71 (221)
T 1e6b_A            6 EEKLKLYSYWR------SSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKIN--PMGTVPALVDGDVVIN   71 (221)
T ss_dssp             --CCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHC--TTCCSSEEEETTEEEE
T ss_pred             CCCeEEEecCC------CCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhC--CCCCCCEEEECCEEEe
Confidence            45789999985      999999999999999999998887532  2335566664  4567999987665543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.37  E-value=0.01  Score=44.03  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+.+...|++     .++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        23 ~~~vlv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~--~i~~~Pt~~~   82 (118)
T 2f51_A           23 PGLVLVDFFATW------CGPCQRLGQILPSIAEANKDVTFIKVDVDKNGN----AADAY--GVSSIPALFF   82 (118)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHhc--CCCCCCEEEE
Confidence            345788899998      9999999888776     367888889988765    44455  4677999865

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.37  E-value=0.0099  Score=43.54  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        30 ~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~i~~~Pt~~~   90 (121)
T 2i1u_A           30 NKPVLVDFWATW------CGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE----TARNF--QVVSIPTLIL   90 (121)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhc--CCCcCCEEEE
Confidence            345788899997      99999999887762      47788888887765    34445  4677899876

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=96.36  E-value=0.0064  Score=49.53  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      -+.+|+..      +||+|.+++-+|+..|++|+.+.|+... ..+++.++.  +...+|.+..+|..|.....+.+..
T Consensus         3 Mm~LY~~~------~sP~~~rvr~~L~e~gi~~e~~~v~~~~-~~~~~~~~n--P~g~vPvL~~~~~~l~ES~aI~~yL   72 (210)
T 4hoj_A            3 MMTLYSGI------TCPFSHRCRFVLYEKGMDFEIKDIDIYN-KPEDLAVMN--PYNQVPVLVERDLVLHESNIINEYI   72 (210)
T ss_dssp             -CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHC--TTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEecCC------CChHHHHHHHHHHHcCCCCEEEEeCCCC-CCHHHHHHC--CCCCCcEEEECCEEEeccHHHHHHH
Confidence            36789887      5999999999999999999988875432 124566665  3679999999999988777666543

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=96.34  E-value=0.0034  Score=52.37  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCC-CCCCceeeeccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIG   94 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~-~~vP~i~i~g~~~g   94 (251)
                      +.++||+.++      ||+|.+++-+|+.+|++|+.+.|+.. ....++.++.  .. ..+|++..+|..+.
T Consensus        11 ~~~~Ly~~~~------sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vPvL~~~g~~l~   73 (231)
T 4dej_A           11 SVMTLYSGKD------DLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLN--PYPEAKPTLVDRELVLY   73 (231)
T ss_dssp             SSCEEEECSS------CHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHC--CSSSCCSEEEETTEEEE
T ss_pred             ceEEEEcCCC------ChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhC--CCCCCCCEEEECCEEEE
Confidence            4689999996      99999999999999999999888754 2234566664  45 67999987665543

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.33  E-value=0.0062  Score=43.72  Aligned_cols=55  Identities=9%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        20 ~~~~~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~   80 (108)
T 2trx_A           20 DGAILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKY--GIRGIPTLLL   80 (108)
T ss_dssp             SSEEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHT--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHc--CCcccCEEEE
Confidence            345788888997      99999998887762      36677788887765    33445  4677999976

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=96.32  E-value=0.0028  Score=52.05  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |.++++|+.++      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   66 (221)
T 2imi_A            1 MSNLVLYTLHL------SPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLN--PQHTIPVLDDNGTIIT   66 (221)
T ss_dssp             -CCEEEEECTT------CHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEETTEEEE
T ss_pred             CCceEEeeCCC------CccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhC--cCCCCCEEEECCEEEe
Confidence            45689999996      999999999999999999988876432  2234555544  4568999976665543

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.30  E-value=0.012  Score=43.43  Aligned_cols=55  Identities=18%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        31 ~k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~   90 (116)
T 3qfa_C           31 DKLVVVDFSATW------CGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASEC--EVKSMPTFQF   90 (116)
T ss_dssp             TSCEEEEEECTT------CHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHc--CCccccEEEE
Confidence            345677789998      99999999988874     46677778877765    44455  4677999876

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=96.27  E-value=0.0038  Score=51.08  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=48.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |.++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   66 (216)
T 3ay8_A            1 MSSLKLYHFPV------SGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLN--PQHCVPTLDDNNFVLW   66 (216)
T ss_dssp             -CCCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHS--SSCCSSEEEETTEEEE
T ss_pred             CCceEEecCCC------CccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhC--CCCCCCeEEECCEEEE
Confidence            34679999996      999999999999999999998887432  2235566665  4567999987665543

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=96.27  E-value=0.003  Score=52.36  Aligned_cols=64  Identities=13%  Similarity=0.002  Sum_probs=46.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +..++||+.++      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus        21 ~~m~~Ly~~~~------sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   86 (229)
T 4iel_A           21 QSMLHILGKIP------SINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALN--PNGLVPVIKDDGFVLW   86 (229)
T ss_dssp             -CCEEEESCTT------CHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTC--TTCCSCEEEETTEEEE
T ss_pred             cceEEEecCCC------CcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcC--CCCCCCEEEECCEEEE
Confidence            45699999996      999999999999999999998876532  2234555543  4567999998766543

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=96.27  E-value=0.0049  Score=50.86  Aligned_cols=61  Identities=11%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCC-CCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~-~~vP~i~i~g~~~   93 (251)
                      ++++||+.++      ||+|.+++-+|+..|++|+.+.++.. ...+++.++.  .. ..+|++..+|..+
T Consensus         5 ~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vP~L~~~g~~l   66 (230)
T 1gwc_A            5 DDLKLLGAWP------SPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSN--PVHKKIPVLIHNGAPV   66 (230)
T ss_dssp             CCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHS--TTTCCSCEEEETTEEE
T ss_pred             CcEEEEeCCC------ChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhC--CCCCccCEEEECCEEe
Confidence            5799999996      99999999999999999998887643 1123455553  22 5799998766544

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=96.27  E-value=0.014  Score=47.28  Aligned_cols=72  Identities=17%  Similarity=0.143  Sum_probs=56.1

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++.+  ...++++..|.+...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (207)
T 1zl9_A            2 VSYKLTYFN------GRGAGEVSRQIFAYAGQQYEDNRVTQE--QWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFL   73 (207)
T ss_dssp             CCEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTT--THHHHHHTTCSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcC------CCchHHHHHHHHHHcCCCceEEEecHH--HHHHHhhccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            357888887      489999999999999999999988753  235666662224679999999999888877766643

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.26  E-value=0.0053  Score=44.84  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=41.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++      .++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        17 ~~~~lv~f~a~w------C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   77 (112)
T 2voc_A           17 EGVVLADFWAPW------CGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE----TAGKY--GVMSIPTLLV   77 (112)
T ss_dssp             SSEEEEEEECTT------BGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS----HHHHT--TCCSBSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHc--CCCcccEEEE
Confidence            345677888897      9999998887765      247888888887765    34445  4677999977

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.26  E-value=0.013  Score=42.48  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeecc-CCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~-~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ..-++.|+++|      |++|+++...|++.     ++.|..+|++ .+.+    +.+.+  +...+|.+++.
T Consensus        25 ~~vlv~f~a~w------C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~--~v~~~Pt~~~~   85 (111)
T 2pu9_C           25 KPVVLDMFTQW------CGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKT----LAKEL--GIRVVPTFKIL   85 (111)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH----HHHHH--CCSBSSEEEEE
T ss_pred             CEEEEEEECCc------CHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHH----HHHHc--CCCeeeEEEEE
Confidence            45678888997      99999998888763     4777777887 4443    44455  46779997763

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=96.25  E-value=0.0074  Score=44.90  Aligned_cols=57  Identities=14%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....|+.|+++|      |++|++....|.+      .++.+..+|++.+..  .++.+.+  +...+|.+++
T Consensus        26 ~k~~lv~f~a~w------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~--~~~~~~~--~v~~~Pt~~~   88 (126)
T 2l57_A           26 GIPTIIMFKTDT------CPYCVEMQKELSYVSKEREGKFNIYYARLEEEKN--IDLAYKY--DANIVPTTVF   88 (126)
T ss_dssp             SSCEEEEEECSS------CHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHH--HHHHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------CccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCch--HHHHHHc--CCcceeEEEE
Confidence            345788889997      9999998888776      246667777223322  3455556  5677999976

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=96.25  E-value=0.0031  Score=52.49  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-eccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~g   94 (251)
                      .+++++||+.++      ||+|.+++-+|+.+|++|+.+.|+... ..+++.++.  ....+|++.. +|..+.
T Consensus        20 ~~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~--P~g~vP~L~~~~g~~l~   84 (241)
T 3vln_A           20 PEGSIRIYSMRF------SPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKN--PFGLVPVLENSQGQLIY   84 (241)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHC--TTCCSCEEECTTCCEEE
T ss_pred             CCCeEEEEcCCC------CcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhC--CCCCCCEEEECCCcEEE
Confidence            356899999996      999999999999999999998886543 123355554  4567999998 665543

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=96.25  E-value=0.0045  Score=52.38  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=46.3

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..|.+++||+.+.      ||+|.+++-+|+.+|++|+.+.|+...  ....++.++.  ....+|++..
T Consensus        15 ~~m~~~~Ly~~~~------~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~   76 (260)
T 1k0d_A           15 QPLEGYTLFSHRS------APNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN--PNARVPALID   76 (260)
T ss_dssp             CCSSSEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEE
T ss_pred             CCCCcEEEEcCCC------CccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhC--CCCCcCEEEe
Confidence            3466899999996      999999999999999999988776432  2335566554  3467999987

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=96.25  E-value=0.0056  Score=50.66  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=48.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .|+++++|+.+.      |++|.+++-+|+.+|++|+.+.++.  +...++.+..  ....+|++..+|..+.
T Consensus        24 ~m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~n--P~g~vPvL~~~g~~l~   86 (225)
T 2hnl_A           24 QMEKYTLTYFNG------RGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRT--PFGHVPMLNVSGNVLG   86 (225)
T ss_dssp             CCCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGS--SSSCSCEEEETTEEEE
T ss_pred             cCCCeEEEEcCC------CCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCC--CCCCCCEEEECCEEEe
Confidence            366899999996      9999999999999999999988874  2335555544  4567999987765543

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=96.24  E-value=0.0038  Score=50.52  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      .+++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.+..  ....+|++..+|..+..
T Consensus         2 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~e   66 (209)
T 1axd_A            2 PMKLYGAVM------SWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN--PFGQVPALQDGDLYLFE   66 (209)
T ss_dssp             CEEEESCTT------CTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEES
T ss_pred             ceEEEeCCC------CchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhC--cCCCCCeEEECCEEEec
Confidence            478999996      999999999999999999998876542  2234555543  45679999887655543

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=96.22  E-value=0.0068  Score=48.74  Aligned_cols=59  Identities=17%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.+  ...+++++.  ....+|++..+|..+
T Consensus         2 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~g~~l   60 (198)
T 2cvd_A            2 NYKLTYFNM------RGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTL--PFGKIPILEVDGLTL   60 (198)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTS--TTSCSCEEEETTEEE
T ss_pred             CcEEEEcCC------CchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCC--CCCCCCEEEECCEEE
Confidence            578999996      99999999999999999999888752  345565544  456799998766544

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=96.22  E-value=0.0048  Score=53.77  Aligned_cols=65  Identities=8%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      |.+++||+.+.      ||+|.+++-+|+.+|++|+.+.++... ...++.++.+ ....+|++..+|..+..
T Consensus         1 M~~~~Ly~~~~------sp~~~kvr~~L~~~gi~ye~~~v~~~~-~~~~~~~~n~-P~g~vPvL~~~g~~l~e   65 (310)
T 3ic8_A            1 MSELILHHYPT------SLFAEKARLMLGFKGVNWRSVTIPSIM-PKPDLTALTG-GYRKTPVLQIGADIYCD   65 (310)
T ss_dssp             -CCEEEEECTT------CGGGHHHHHHHHHHTCEEEEEECCSSS-CCHHHHHHHS-SCCCSCEEEETTEEECS
T ss_pred             CCeEEEEecCC------CcHHHHHHHHHHhcCCCcEEEEcCCCC-CcHHHHHhcC-CCCceeEEEECCEEEcC
Confidence            44689999996      999999999999999999998886532 2345666653 45689999987765443

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=96.21  E-value=0.0089  Score=49.32  Aligned_cols=72  Identities=21%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+.++|+..      .|++|.+++-+|+..|++|+.+.|+..  +....++.++.  +...||.+..+|..|.....+.+
T Consensus         2 ~kpiLY~~~------~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~~~~l~eS~aI~~   73 (228)
T 4hi7_A            2 VKPILYGID------ASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKN--PQHTVPLLEDGDANIADSHAIMA   73 (228)
T ss_dssp             -CCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHC--TTCCSCEEEETTEEEESHHHHHH
T ss_pred             CceEEEECC------CChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhC--CCCceeeEEECCEEEechHHHHH
Confidence            456899888      499999999999999999998877543  33445666665  36799999999999888777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        74 YL   75 (228)
T 4hi7_A           74 YL   75 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.21  E-value=0.012  Score=41.87  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=41.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ....++.|+++|      |++|+.+...|++.      .+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        19 ~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~--~v~~~Pt~~~   79 (106)
T 3die_A           19 SGVQLVDFWATA------CGPCKMIAPVLEELAADYEGKADILKLDVDENPST----AAKY--EVMSIPTLIV   79 (106)
T ss_dssp             SSEEEEEEECSB------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHT--TCCSBSEEEE
T ss_pred             CCcEEEEEECCC------CHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHH----HHhC--CCcccCEEEE
Confidence            345788888897      99999999888763      267778888877763    4445  4677899866

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=96.20  E-value=0.0071  Score=48.83  Aligned_cols=71  Identities=11%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+.+|+..      .|++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+.
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~y   73 (209)
T 1axd_A            2 PMKLYGAV------MSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN--PFGQVPALQDGDLYLFESRAICKY   73 (209)
T ss_dssp             CEEEESCT------TCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEeCC------CCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhC--cCCCCCeEEECCEEEecHHHHHHH
Confidence            46788877      4999999999999999999999886542  2334555554  367999999999999888877664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (209)
T 1axd_A           74 A   74 (209)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=96.20  E-value=0.0076  Score=48.71  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=54.4

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .++++|+...      +++|.+++-+|+..|++|+.+.++.. ....++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~~------s~~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   72 (208)
T 1yq1_A            2 PSYKLTYFFF------RGLGEPIRLLFHLAGVQFEEVRMNPD-QTWLDIKDST--PMKQLPVLNIDGFELPQSGAILRYL   72 (208)
T ss_dssp             CCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEECTT-TCCHHHHHTS--TTSCSCEEEESSCEECCHHHHHHHH
T ss_pred             CceEEEEeCC------CCchHHHHHHHHHcCCCeEEEEeccc-chhhhhhccC--CCCCCCEEEECCEEEeeHHHHHHHH
Confidence            3578888874      99999999999999999999888631 1124555554  3678999999999898887766643

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=96.18  E-value=0.011  Score=48.27  Aligned_cols=73  Identities=21%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      +.++++|+..      .|++|.+++-+|+..|++|+.+.++...  ....++.+...  ...+|.+..+|..|.+...+.
T Consensus         6 ~~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP--~g~vP~L~~~g~~l~eS~aI~   77 (221)
T 1e6b_A            6 EEKLKLYSYW------RSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINP--MGTVPALVDGDVVINDSFAII   77 (221)
T ss_dssp             --CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCT--TCCSSEEEETTEEEESHHHHH
T ss_pred             CCCeEEEecC------CCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCC--CCCCCEEEECCEEEeeHHHHH
Confidence            3468899877      3899999999999999999999886532  23456666653  679999999999888877766


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        78 ~yL   80 (221)
T 1e6b_A           78 MYL   80 (221)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=96.18  E-value=0.0095  Score=48.44  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHH-----HhCCCCCCCceEEECCeeeCChHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKE-----RLGTDVINVPQIFVEGVHIGDADA  176 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~-----~~g~~~~~vP~vfi~g~~iGG~d~  176 (251)
                      ..+++|+...      +++|.+++-+|+..|++|+.+.++...+...++.+     ..  +...+|.+..+|..|.....
T Consensus         3 ~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~a   74 (211)
T 1okt_A            3 DNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDT--PFEQVPILQIGDLILAQSQA   74 (211)
T ss_dssp             CCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCC--SSSCSCEEEETTEEEECHHH
T ss_pred             CccEEEEECC------CchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccC--CCCCCCEEEECCEEeehHHH
Confidence            3578888884      99999999999999999999888532223455555     43  46789999999998888777


Q ss_pred             HHHHH
Q psy15946        177 IERLN  181 (251)
Q Consensus       177 l~~l~  181 (251)
                      +.+..
T Consensus        75 I~~yL   79 (211)
T 1okt_A           75 IVRYL   79 (211)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66643

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=96.18  E-value=0.0026  Score=53.30  Aligned_cols=61  Identities=15%  Similarity=0.184  Sum_probs=47.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |..++||+.++      ||+|.+++-+|+.+|++|+.+.|..+  ...++.++.  ....+|++..+|..+
T Consensus         1 M~~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~n--P~g~vPvL~~~~~~l   61 (242)
T 3ubk_A            1 MVMIKLHGASI------SNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKIS--PMGKIPVLEMDGKFI   61 (242)
T ss_dssp             -CCEEEESCTT------CHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTS--TTCCSCEEEETTEEE
T ss_pred             CCeEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcC--CCCCcCeEEECCceE
Confidence            45689999996      99999999999999999999988543  234555554  456799999877553

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=96.18  E-value=0.0062  Score=49.90  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCC-CCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~-~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++.. ....++.++.  .. ..+|++..+|..+.
T Consensus         4 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vP~L~~~g~~l~   65 (219)
T 2vo4_A            4 EVVLLDFWP------SPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMN--PVHKKIPVLIHNGKPIC   65 (219)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHC--TTTCCSCEEEETTEEEE
T ss_pred             ceEEEeccC------CchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhC--CCCCcCCEEEECCEeee
Confidence            689999996      99999999999999999998887643 1223455553  22 47999987665543

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=96.18  E-value=0.0059  Score=52.17  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=52.8

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER  179 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~  179 (251)
                      .+.+++|+..      .||+|.+++-+|+..||+|+.+.|+.....-+.+....+ ....||.+-+ ||..|-....+.+
T Consensus         4 p~~~~LY~~~------~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~n-P~g~VPvL~~d~g~~l~ES~aI~~   76 (265)
T 4g10_A            4 PQELTIYHIP------GCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTG-GTTALPLLDVENGESLKESMVILR   76 (265)
T ss_dssp             CCCCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHT-SCCCSCEEECTTSCEEECHHHHHH
T ss_pred             CCceEEEecC------CChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcC-CCCccceEEECCCeEEeccHHHHH
Confidence            3568999988      499999999999999999998887643222233333232 3678999977 6777777666655


Q ss_pred             H
Q psy15946        180 L  180 (251)
Q Consensus       180 l  180 (251)
                      .
T Consensus        77 Y   77 (265)
T 4g10_A           77 Y   77 (265)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=96.17  E-value=0.013  Score=47.55  Aligned_cols=72  Identities=11%  Similarity=0.099  Sum_probs=55.1

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .++++|+..      .++.|.+++-+|+..|++|+.+.++.......++++..  ....+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   73 (210)
T 2a2r_A            2 PPYTVVYFP------VRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASC--LYGQLPKFQDGDLTLYQSNTILRHL   73 (210)
T ss_dssp             CSEEEEECS------SSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHS--TTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEeC------CcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCC--CCCCCCEEEECCEEEeeHHHHHHHH
Confidence            357788877      49999999999999999999998865322223566654  3678999999999888877666643

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=96.16  E-value=0.0043  Score=53.05  Aligned_cols=70  Identities=13%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             cCCCeEEEEeecCC---CCCCCCchHHHHHHHH----HHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         21 KEAGKIVMYSTTMG---IVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        21 ~~~~~vvvyt~~~~---~~~~~C~~C~~~k~~L----~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .+|..|++|....+   .....||+|.+++-+|    +.+|++|+.+.++... .-+++.++.  ....+|++..+|..+
T Consensus        18 ~~~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~n--P~gkVPvL~d~g~~l   94 (260)
T 2yv7_A           18 FDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNF--EATHPPILIDNGLAI   94 (260)
T ss_dssp             GCCCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CC--TTCCSCEEEETTEEE
T ss_pred             CCCccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhC--CCCCCCEEEECCEEE
Confidence            45778999976643   4567899999999999    8889999988776431 123455543  456799998766544

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.15  E-value=0.015  Score=42.97  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=40.0

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeecc-CCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~-~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|++....|++.     ++.+..+|++ .+++    +.+.+  +...+|.+++
T Consensus        37 ~~~~vv~f~a~w------C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~----~~~~~--~v~~~Pt~~~   97 (124)
T 1faa_A           37 DKPVVLDMFTQW------CGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT----LAKEL--GIRVVPTFKI   97 (124)
T ss_dssp             TSCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH----HHHHH--CCSSSSEEEE
T ss_pred             CCEEEEEEECCc------CHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHH----HHHHc--CCCeeeEEEE
Confidence            345788889997      99999998888763     4777777876 3433    44455  5677999876

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=96.15  E-value=0.0072  Score=49.35  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++++|+...      +++|.+++-+|+..|++|+.+.++.. ....++.+...  ...+|.+..+|..|.+...+.+..
T Consensus         8 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~yL   77 (215)
T 3lyp_A            8 RLACYSDPA------DHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNP--YGSLPTLVDRDLALWESTVVMEYL   77 (215)
T ss_dssp             CCEEEECTT------CHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCT--TCCSSEEECC-CEEESHHHHHHHH
T ss_pred             CeEEEeCCC------CchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCC--CCCcCeEEECCEEeecHHHHHHHH
Confidence            688999884      99999999999999999999988654 23456666654  679999999999888877766643

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.13  E-value=0.014  Score=39.25  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=37.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHH----hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILR----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~----~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      +|.+|++ |      |+.|..+...|+    .++.++....++ +    .++.+..|  ...+|.++++|+.+
T Consensus         3 ~v~f~a~-w------C~~C~~~~~~l~~~~~~~~~~~~~~~v~-~----~~~~~~~~--v~~~Pt~~~~G~~~   61 (77)
T 1ilo_A            3 KIQIYGT-G------CANCQMLEKNAREAVKELGIDAEFEKIK-E----MDQILEAG--LTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEECS-S------SSTTHHHHHHHHHHHHHTTCCEEEEEEC-S----HHHHHHHT--CSSSSCEEETTEEE
T ss_pred             EEEEEcC-C------ChhHHHHHHHHHHHHHHcCCceEEEEec-C----HHHHHHCC--CCcCCEEEECCEEE
Confidence            4566664 5      999998777654    445455555555 3    34555565  78999999999865

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=96.13  E-value=0.014  Score=48.71  Aligned_cols=73  Identities=22%  Similarity=0.246  Sum_probs=57.9

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      +.++++|...      .+++|.+++-+|+..|++|+.+.++..  .....++.+...  ...+|.+..+|..|.+...+.
T Consensus        24 ~~~~~Ly~~~------~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP--~g~vPvL~~~g~~l~eS~aI~   95 (243)
T 3qav_A           24 TSKPFVYWGS------GSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNP--RGQVPTFTDGDVVVNESTAIC   95 (243)
T ss_dssp             -CCCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCT--TCCSCEEEETTEEECSHHHHH
T ss_pred             cCccEEEeCC------CCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCC--CCCCCEEEECCEEEecHHHHH
Confidence            3568899988      499999999999999999999888643  334466777754  679999999999998877776


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        96 ~YL   98 (243)
T 3qav_A           96 MYL   98 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=96.13  E-value=0.0061  Score=49.53  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=46.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+
T Consensus         2 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l   64 (214)
T 2v6k_A            2 KMKLYNFWR------SGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALN--PQQLVPALDTGAQVL   64 (214)
T ss_dssp             CCEEEECSS------CHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHC--TTCCSCEEECSSCEE
T ss_pred             eeEEEecCC------CCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcC--CCCcCCEEEECCEEE
Confidence            468999985      999999999999999999998876532  2335666664  456799996655544

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=96.12  E-value=0.0099  Score=48.25  Aligned_cols=61  Identities=8%  Similarity=0.117  Sum_probs=47.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC-HHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS-RETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d-~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +++|+.+.      ||+|.+++-+|+.+|++|+.+.++.. .+...++.++.  ....+|++..+|..+.
T Consensus         1 ~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   62 (210)
T 1v2a_A            1 MDYYYSLI------SPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLN--PQHTIPTLVDNGHVVW   62 (210)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC--TTCCSCEEEETTEEEE
T ss_pred             CeEEeCCC------CccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhC--CCCCcCeEEECCEEEE
Confidence            37899886      99999999999999999998888753 23336677665  4567999987665543

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=96.11  E-value=0.011  Score=49.03  Aligned_cols=72  Identities=8%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCC-CCCceEEECCeeeCChHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~-~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +.++++|+...      |++|.+++-+|+..|++|+.+.++.. ....++.+...  . ..+|.+..+|..|.+...+.+
T Consensus         4 ~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP--~~g~vP~L~~~g~~l~eS~aI~~   74 (231)
T 1oyj_A            4 EKELVLLDFWV------SPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNP--VHRKIPVLLHAGRPVSESLVILQ   74 (231)
T ss_dssp             SCCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHST--TTCCSCEEEETTEEEESHHHHHH
T ss_pred             CCceEEEeCCC------ChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCC--CCCCCCEEEECCEEEecHHHHHH
Confidence            46788998874      99999999999999999999888643 22344555542  4 589999999998888777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        75 yL   76 (231)
T 1oyj_A           75 YL   76 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=96.10  E-value=0.0049  Score=50.03  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=46.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceee-ecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      |..+++|+.+.      ||+|.+++-+|+..|++|+.+.++..  .....++.++.  ....+|++.+ +|..+
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~d~g~~l   66 (210)
T 3m3m_A            1 MSLYKVYGDYR------SGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKN--PNGKIPVLELEDGTCL   66 (210)
T ss_dssp             -CCEEEEECTT------SHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTC--TTCCSCEEEETTSCEE
T ss_pred             CCeEEEeCCCC------CCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhC--CCCCCCEEEecCCEEE
Confidence            45689999996      99999999999999999999887642  22234455543  4567999986 55443

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.09  E-value=0.036  Score=40.20  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        30 lv~f~a~~------C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   92 (112)
T 1syr_A           30 IVDFFAEW------CGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKEN--ITSMPTFKVYKNGSSV   92 (112)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHH----HHHHcC--CCcccEEEEEECCcEE
Confidence            45667775      99999988877652     57888889887653    445555  778998766  78653

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=96.09  E-value=0.0087  Score=48.53  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      |+++++|..+.      +++|.+++-+|+..|++|+.+.++.+  ...++++..  ....+|++..+|
T Consensus         3 m~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~~   60 (211)
T 2wb9_A            3 KQHFKLWYFQF------RGRAEPIRLLLTCAGVKFEDYQFTMD--QWPTIKPTL--PGGRVPLLDVTG   60 (211)
T ss_dssp             CCEEEEEEESS------CGGGHHHHHHHHHTTCCCEEEEECTT--THHHHGGGS--GGGCSCEEEEEC
T ss_pred             CCceEEEEeCC------CCchHHHHHHHHHcCCCceEEEechh--hHHHhCcCC--CCCCCCEEEECC
Confidence            56799999985      99999999999999999999988743  235555543  456799998876

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.07  E-value=0.033  Score=39.53  Aligned_cols=56  Identities=18%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        22 lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   85 (109)
T 2yzu_A           22 LVDFWAEW------CAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK----TAMRYR--VMSIPTVILFKDGQPV   85 (109)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh----HHHhCC--CCcCCEEEEEeCCcEe
Confidence            45666665      99999888776553      47788888887754    444555  678999877  88743

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=96.07  E-value=0.015  Score=46.84  Aligned_cols=70  Identities=20%  Similarity=0.117  Sum_probs=54.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++.  +...++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on7_A            2 VHYKLTYFA------IRGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDL--PFGQVPVLEVDGKQLAQSLAICRYL   71 (206)
T ss_dssp             CCEEEEEES------SSTTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGS--SSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcC------CCcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCC--CCCCCCEEEECCEEEeeHHHHHHHH
Confidence            357888887      48999999999999999999998863  2234555554  3678999999999888877766643

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.07  E-value=0.014  Score=43.31  Aligned_cols=55  Identities=13%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.       ++.|..+|++.+++.    .+.+  +...+|.+++
T Consensus        33 ~k~vvv~f~a~~------C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~----~~~~--~v~~~Pt~~~   94 (121)
T 2j23_A           33 DKVVVIDFWATW------CGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI----AQEV--GIRAMPTFVF   94 (121)
T ss_dssp             SSCEEEEEECTT------CSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHH----HHHH--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHH----HHHc--CCCcccEEEE
Confidence            345788888887      99999999888863       267777888877653    3444  4667999876

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=96.05  E-value=0.01  Score=48.37  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=47.7

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .++++|+...    ..|++|.+++-+|+..|++|+.+.++...  ....++.++..  ...+|.+..+|..|.+...+.+
T Consensus         5 ~~~~Ly~~~~----~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP--~g~vP~L~~~g~~l~eS~aI~~   78 (215)
T 3bby_A            5 PAITLWSDAH----FFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQ--TRRVPLLQIDDFELSESSAIAE   78 (215)
T ss_dssp             CCEEEEEETT----SCCHHHHHHHHHHHHHTCCCEEEEEC--------------------CCCEEEETTEEEESHHHHHH
T ss_pred             CCEEEEecCC----CCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCC--CCCCCEEEeCCeEeecHHHHHH
Confidence            4678888750    13999999999999999999998886532  23345665543  6789999999998888777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        79 yL   80 (215)
T 3bby_A           79 YL   80 (215)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=96.04  E-value=0.0043  Score=51.17  Aligned_cols=63  Identities=17%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee-ecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      |..++||+.+.      ||+|.+++-+|+.+|++|+.+.|+...  ....+++++.  ....+|++.+ +|..+
T Consensus         1 M~~~~Ly~~~~------sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~~g~~l   66 (225)
T 3m8n_A            1 MSLYKLYSMQR------SGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKN--PSGQVPLLETAPGRYL   66 (225)
T ss_dssp             -CCEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTC--TTCCSSEEECSTTCEE
T ss_pred             CCceEEecCCC------CCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhC--CCCCCCEEEeCCCCEE
Confidence            45689999996      999999999999999999988876421  2234455543  4567999987 44443

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=96.04  E-value=0.0095  Score=49.94  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGV   91 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~   91 (251)
                      .++++||+.++      ||+|.+++-+|+.+|++|+.+.|+... ..+++.++.  ....+|++.. +|.
T Consensus        24 ~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~n--P~g~vP~L~~~~g~   84 (246)
T 3rbt_A           24 TDKLRLYHVDM------NPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKN--PRLKIPVLEIPTDQ   84 (246)
T ss_dssp             CSSEEEEECTT------CHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHC--TTCBSCEEEECCTT
T ss_pred             CCceEEEecCC------CccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhC--CCCCCCEEEecCCC
Confidence            45799999996      999999999999999999998886543 234466665  4567999998 665

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=96.03  E-value=0.0094  Score=49.20  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      |+.|+++|      |++|.++...|++.     ++.+..+|++.+++    +.+.+  +..++|.++++|+
T Consensus       140 ~v~F~a~w------C~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          140 IWVFVTTS------CGYCPSAAVMAWDFALANDYITSKVIDASENQD----LAEQF--QVVGVPKIVINKG  198 (229)
T ss_dssp             EEEEECTT------CTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH----HHHHT--TCCSSSEEEEGGG
T ss_pred             EEEEECCC------CcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHHc--CCcccCEEEECCE
Confidence            55699998      99999999888764     57778888887766    44455  5677999999655

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.03  E-value=0.019  Score=42.22  Aligned_cols=55  Identities=9%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+++...|++.      ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 ~~~~lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   81 (122)
T 3aps_A           21 KTHWVVDFYAPW------CGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKA--GIKAYPSVKL   81 (122)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH----HHHHc--CCCccceEEE
Confidence            345788899997      99999998888762      57888888888765    44445  4677999865

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=96.03  E-value=0.011  Score=48.83  Aligned_cols=59  Identities=10%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      ++++||+.+.      |++|.+++-+|+.+|++|+.+.|+..  .....++.++.  ....+|++..++
T Consensus         8 ~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~   68 (235)
T 3n5o_A            8 PNFELYGYFR------SSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLN--PTNTVPLLVVSN   68 (235)
T ss_dssp             CEEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEEES
T ss_pred             CCeEEEecCC------CcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcC--CCCCCCEEEeCC
Confidence            4799999996      99999999999999999998887643  23345667665  456799999876

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=96.03  E-value=0.012  Score=47.97  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .|++|.+++-+|+..|++|+.+.++.. ....++.+...  ...+|.+..+|..|.+...+.+..
T Consensus         9 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~yL   79 (213)
T 1yy7_A            9 SVMTLFSGP------TDIFSHQVRIVLAEKGVSVEIEQVEAD-NLPQDLIDLNP--YRTVPTLVDRELTLYESRIIMEYL   79 (213)
T ss_dssp             SSEEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCTT-SCCHHHHHHCT--TCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEcCC------CChhHHHHHHHHHHcCCCCeEEeCCcc-cCcHHHHHHCC--CCCCCEEEECCEEEecHHHHHHHH
Confidence            357899887      499999999999999999999988652 22345566653  678999999999888877766643

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=96.02  E-value=0.0076  Score=48.96  Aligned_cols=61  Identities=15%  Similarity=0.114  Sum_probs=46.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +++|+.++      ||+|.+++-+|+.+|++|+.+.++..  .....++.++.  ...++|++..+|..+.
T Consensus         1 ~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   63 (209)
T 1pn9_A            1 MDFYYLPG------SAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLN--PQHCIPTLVDNGFALW   63 (209)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSSEEEETTEEEE
T ss_pred             CeEEeCCC------CccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhC--CCCCCCEEEECCEEEE
Confidence            37899986      99999999999999999998887642  22235666665  4567999987765543

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=96.01  E-value=0.02  Score=45.94  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      ++.+|+..      .+++|.+++-+|+..|++|+.+.++.+  ...++.+..  +...+|.+..+|..+.+...+.+..+
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL~   71 (198)
T 2cvd_A            2 NYKLTYFN------MRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTL--PFGKIPILEVDGLTLHQSLAIARYLT   71 (198)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTS--TTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CcEEEEcC------CCchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCC--CCCCCCEEEECCEEEecHHHHHHHHH
Confidence            36788877      499999999999999999999888652  345555554  36789999999999988887777554


Q ss_pred             c
Q psy15946        183 S  183 (251)
Q Consensus       183 ~  183 (251)
                      .
T Consensus        72 ~   72 (198)
T 2cvd_A           72 K   72 (198)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=96.01  E-value=0.01  Score=48.68  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      +++|.+++-+|+..|++|+.+.++..+. ..++++...+....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~   65 (221)
T 1k3y_A            1 AEKPKLHYFNA------RGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLV   65 (221)
T ss_dssp             CCCCEEEEESS------STTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEE
T ss_pred             CCCcEEEEeCC------CchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEe
Confidence            45679999885      9999999999999999999998874322 34455441114567999987765543

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=96.01  E-value=0.025  Score=45.75  Aligned_cols=70  Identities=10%  Similarity=0.085  Sum_probs=54.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC-HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS-RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~-~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .+++|.+++-+|+..|++|+.+.++.. .+...++.+...  ...+|.+..+|..+.+...+.+..
T Consensus         1 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP--~g~vP~L~~~g~~l~eS~aI~~yL   71 (210)
T 1v2a_A            1 MDYYYSL------ISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNP--QHTIPTLVDNGHVVWESYAIVLYL   71 (210)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCT--TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCC------CCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCC--CCCcCeEEECCEEEEcHHHHHHHH
Confidence            3577776      499999999999999999999888653 233367777653  678999999999888877766643

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.00  E-value=0.012  Score=42.25  Aligned_cols=55  Identities=15%  Similarity=0.240  Sum_probs=40.0

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+++...|.+.         ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 ~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   84 (111)
T 3uvt_A           21 EGITFIKFYAPW------CGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN----ICSKY--SVRGYPTLLL   84 (111)
T ss_dssp             SSEEEEEEECSS------CHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------ChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh----HHHhc--CCCcccEEEE
Confidence            345788899997      99999999888763         35566777776665    44455  4677998876

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.99  E-value=0.061  Score=42.04  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=26.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcC-Cccceeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL-VKFDDKDV   62 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-v~~~e~dv   62 (251)
                      ...|++|+-..      ||||+++...|++++ +.+..+++
T Consensus        15 ~~~vv~f~D~~------Cp~C~~~~~~l~~l~~v~v~~~~~   49 (147)
T 3gv1_A           15 KLKVAVFSDPD------CPFCKRLEHEFEKMTDVTVYSFMM   49 (147)
T ss_dssp             CEEEEEEECTT------CHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred             CEEEEEEECCC------ChhHHHHHHHHhhcCceEEEEEEc
Confidence            45899999996      999999999998764 44444443

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=95.98  E-value=0.013  Score=49.16  Aligned_cols=78  Identities=10%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             chheeeeeeecc--cccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        101 AGKIVMYSTTMG--IVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       101 ~~~Vviyt~sl~--~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      +..+.+|.+.-.  ....+||+|.+++-+|...|++|+.+.++.. ....++.+..  +...||.+..+|..|.....+.
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l~eS~aI~   81 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLC--PGGELPFLLYGTEVHTDTNKIE   81 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHC--TTCCSSEEEETTEEEECHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhC--CCCCCCEEEECCEEecCHHHHH
Confidence            446778876521  1123699999999999999999998888653 2334566665  3679999999999888877766


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        82 ~yL   84 (241)
T 1k0m_A           82 EFL   84 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=95.98  E-value=0.017  Score=48.71  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             heeeeeeeccc--ccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGI--VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~--ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .|.+|.+.-..  .-..||+|.+++-+|+..|++|+.+.++.. ....++.++..  ...+|.+..+|..+.....+.+.
T Consensus        25 ~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP--~g~VPvL~~dg~~l~ES~aI~~Y  101 (250)
T 3fy7_A           25 KLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAP--GSQLPILLYDSDAKTDTLQIEDF  101 (250)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC-----------------CCSCEEEETTEEECCHHHHHHH
T ss_pred             CceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCC--CCCCCEEEECCEEecCHHHHHHH
Confidence            57777764332  124699999999999999999999888654 23346666653  67999999999999888777665


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus       102 L  102 (250)
T 3fy7_A          102 L  102 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=95.98  E-value=0.035  Score=38.89  Aligned_cols=56  Identities=20%  Similarity=0.404  Sum_probs=40.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        20 ~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   82 (104)
T 2e0q_A           20 VVDFWAEW------CAPCLILAPIIEELAEDYPQVGFGKLNSDENPD----IAARYG--VMSLPTVIFFKDGEPV   82 (104)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSCEEEEEETTEEE
T ss_pred             EEEEECCC------ChhHHHHhHHHHHHHHHcCCceEEEEECCCCHH----HHHhCC--ccccCEEEEEECCeEh
Confidence            45666665      99999888777552     47888889887754    444555  678999887  88754

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=95.97  E-value=0.0072  Score=50.25  Aligned_cols=73  Identities=14%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIE  178 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~  178 (251)
                      ..+++++|+...      |++|.+++-+|+..|++|+.+.++... ..+++.+...  ...+|.+.+ +|..+.+...+.
T Consensus        20 ~~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P--~g~vP~L~~~~g~~l~eS~aI~   90 (241)
T 3vln_A           20 PEGSIRIYSMRF------SPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNP--FGLVPVLENSQGQLIYESAITC   90 (241)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCT--TCCSCEEECTTCCEEESHHHHH
T ss_pred             CCCeEEEEcCCC------CcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCC--CCCCCEEEECCCcEEEcHHHHH
Confidence            456799999884      999999999999999999999886542 2234555653  678999999 898888877766


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        91 ~yL   93 (241)
T 3vln_A           91 EYL   93 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.97  E-value=0.052  Score=42.75  Aligned_cols=36  Identities=17%  Similarity=0.020  Sum_probs=26.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHH----HHHHHc----CCccceeeccC
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVK----QILRTH----LVKFDDKDVFM   64 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k----~~L~~~----~v~~~e~dv~~   64 (251)
                      ..+|++|+-.+      ||+|.+..    ++++++    .|.+..+++..
T Consensus        28 ~v~i~~f~D~~------Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   71 (175)
T 1z6m_A           28 PVKMIEFINVR------CPYCRKWFEESEELLAQSVKSGKVERIIKLFDK   71 (175)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCC
T ss_pred             CeEEEEEECCC------CcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCC
Confidence            44799999996      99999987    455554    46777666643

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=95.97  E-value=0.021  Score=43.20  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=40.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...|+.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        39 k~~lv~f~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   98 (136)
T 2l5l_A           39 KPAIVDFYADW------CGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE----LAGAF--GIRSIPSILF   98 (136)
T ss_dssp             SCEEEEEECTT------SHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSCEEEE
T ss_pred             CEEEEEEECCc------CHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH----HHHHc--CCCCCCEEEE
Confidence            45788899998      99999998888762      37778888887765    44445  4677999875

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=95.97  E-value=0.014  Score=48.29  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      |++|.+++-+|+.+|++|+.+.++..++ ..++++...+....+|++..+|..+.
T Consensus         2 m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~   66 (229)
T 1vf1_A            2 AAKPVLYYFNG------RGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILMFQQVPMVEIDGMKLV   66 (229)
T ss_dssp             -CCCEEEECSS------CTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCSTTSCSCEEEETTEEEE
T ss_pred             CCCeEEEEeCC------CchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCCCCCCCEEEECCEEEE
Confidence            34689999885      9999999999999999999998874322 34555551114567999987765543

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=95.96  E-value=0.012  Score=47.70  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=55.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ++++|+..      .+++|.+++-+|+..|++|+.+.++...  ....++.+...  ...+|.+..+|..|.+...+.+.
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~y   73 (214)
T 2v6k_A            2 KMKLYNFW------RSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNP--QQLVPALDTGAQVLIQSPAIIEW   73 (214)
T ss_dssp             CCEEEECS------SCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCT--TCCSCEEECSSCEEECHHHHHHH
T ss_pred             eeEEEecC------CCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCC--CCcCCEEEECCEEEecHHHHHHH
Confidence            46788877      4999999999999999999998886542  23456666653  67999998888888887776664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (214)
T 2v6k_A           74 L   74 (214)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=95.96  E-value=0.014  Score=47.00  Aligned_cols=70  Identities=19%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .++++|+...      +++|.+++-+|+..|++|+.+.++.  +...++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 1tw9_A            2 VHYKLTYFNG------RGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATF--PFGQVPVLEVDGQQLAQSQAICRYL   71 (206)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGS--TTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCC------CccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence            3578888874      8999999999999999999998863  2234444444  3678999999999998887766643

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=95.95  E-value=0.028  Score=40.38  Aligned_cols=56  Identities=25%  Similarity=0.384  Sum_probs=39.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      ++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        28 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   91 (112)
T 1ep7_A           28 VVDFTATW------CGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAAG--ITAMPTFHVYKDGVKA   91 (112)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHHT--CCBSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH----HHHHcC--CCcccEEEEEECCeEE
Confidence            45666675      99999887776543      47788888877654    444454  678999766  78753

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=95.94  E-value=0.015  Score=50.42  Aligned_cols=68  Identities=15%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             cCCCeEEEEeecCC---CCCCCCchHHHHHHHH----HHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--ecc
Q psy15946         21 KEAGKIVMYSTTMG---IVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV   91 (251)
Q Consensus        21 ~~~~~vvvyt~~~~---~~~~~C~~C~~~k~~L----~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~   91 (251)
                      .+++.+++|+.+.+   -..+.||+|.+++-+|    +.+||+|+.+.|+....  . ++++.  ....||++..  +|.
T Consensus        15 ~~~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~n--P~GkVPvL~d~~~g~   89 (291)
T 2yv9_A           15 QSKPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNF--LGAQPPIMIEEEKEL   89 (291)
T ss_dssp             GGSCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHH--TTCCSCEEEEGGGTE
T ss_pred             CCCCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcC--CCCCCCEEEEcCCCe
Confidence            56789999987742   2345799999999998    78899999888765422  2 66665  3567999987  665


Q ss_pred             cc
Q psy15946         92 HI   93 (251)
Q Consensus        92 ~~   93 (251)
                      .+
T Consensus        90 ~l   91 (291)
T 2yv9_A           90 TY   91 (291)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=95.94  E-value=0.0084  Score=48.36  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ++++|+.+.      |++|.+++-+|+.+|++|+.+.++.+  ...++++..  ....+|++..+|..+..
T Consensus         2 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~g~~l~e   62 (202)
T 2gsq_A            2 KYTLHYFPL------MGRAELCRFVLAAHGEEFTDRVVEMA--DWPNLKATM--YSNAMPVLDIDGTKMSQ   62 (202)
T ss_dssp             CEEEEECSS------SGGGHHHHHHHHHTTCCCEEEECCTT--THHHHGGGS--GGGSSCEEEETTEEECC
T ss_pred             CcEEEEcCC------CchhHHHHHHHHHcCCCeeEEEeCHH--HHHhhcccC--CCCCCCEEEECCEEEec
Confidence            578999996      99999999999999999999888753  234555543  35679999877655443

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=95.93  E-value=0.0098  Score=47.96  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .++++|+..      .+++|.+++-+|+..|++|+.+.++.+.  ..++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on5_A            2 VHYKLTYFA------GRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEM--PFGQIPVLEEDGKQLAQSFAIARYL   71 (206)
T ss_dssp             CCEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGS--TTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEecC------CCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence            357888877      4899999999999999999999887531  23444444  3678999999999898877766643

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=95.92  E-value=0.004  Score=43.50  Aligned_cols=39  Identities=26%  Similarity=0.629  Sum_probs=32.4

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.+           +|+.|+|+-+++          ..+|+.|+-.|.++
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~G~~~   77 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI----------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC----------SSBCGGGTTSSEEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC----------CCcCCCCCCeEEEe
Confidence            3589999999965           899999998873          24899999998764

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=95.91  E-value=0.015  Score=47.53  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=55.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+++|+..      .|++|.+++-+|+..|++|+.+.++.. ....++.+...  ...+|.+..+|..+.+...+.+..
T Consensus         6 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3lyk_A            6 VMTLFSNK------DDIYCHQVKIVLAEKGVLYENAEVDLQ-ALPEDLMELNP--YGTVPTLVDRDLVLFNSRIIMEYL   75 (216)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHCT--TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeCC------CChhHHHHHHHHHHcCCCcEEEeCCcc-cCcHHHHhhCC--CCCcCeEEECCeEecCHHHHHHHH
Confidence            37888888      499999999999999999999988654 23345666653  679999999999998877766643

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=95.91  E-value=0.018  Score=46.71  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .|++|.+++-+|+..|++|+.+.++..  .....++.+...  ..++|.+..+|..|.+...+.+..
T Consensus         1 ~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~yL   72 (209)
T 1pn9_A            1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNP--QHCIPTLVDNGFALWESRAIQIYL   72 (209)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT--TCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCC------CCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCC--CCCCCEEEECCEEEEeHHHHHHHH
Confidence            3577777      499999999999999999999888642  223356666653  679999999999998877766643

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=95.91  E-value=0.0083  Score=48.97  Aligned_cols=59  Identities=10%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      |.++++|+ +.      +++|.+++-+|+..|++|+.+.++   ....++.++.  ....+|++.. +|..+
T Consensus         1 M~~~~Ly~-~~------~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~n--P~g~vP~L~~~~g~~l   60 (219)
T 1nhy_A            1 MSQGTLYA-NF------RIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDF--PLKKVPAFVGPKGYKL   60 (219)
T ss_dssp             CTTCEEEC-CS------SHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHC--TTCCSSEEECGGGCEE
T ss_pred             CCceEEec-CC------CCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHC--CCCCCCeEEcCCCCEE
Confidence            45689999 53      999999999999999999998887   2234566654  3567999987 65544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=95.90  E-value=0.023  Score=41.81  Aligned_cols=56  Identities=21%  Similarity=0.301  Sum_probs=41.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        34 vv~F~a~w------C~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   96 (114)
T 2oe3_A           34 VIDFYATW------CGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPD----IAKECE--VTAMPTFVLGKDGQLI   96 (114)
T ss_dssp             EEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSBSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHCC--CCcccEEEEEeCCeEE
Confidence            55677776      99999888777655     58888999987764    444555  678999766  78753

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.88  E-value=0.018  Score=42.76  Aligned_cols=53  Identities=13%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +-|+.|.++|      |++|+++...|++.       ++.|..+|++.+.+    +.+.+  +...+|.+++
T Consensus        24 ~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   83 (126)
T 1x5e_A           24 DWMIEFYAPW------CPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG----LSGRF--IINALPTIYH   83 (126)
T ss_dssp             EEEEEEECSS------CHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH----HHHHc--CCcccCEEEE
Confidence            3678888887      99999998887752       57888888887766    44445  4677999876

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.88  E-value=0.0064  Score=44.21  Aligned_cols=54  Identities=11%  Similarity=0.145  Sum_probs=39.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH---------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT---------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~---------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|+++...|.+         ..+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        25 ~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~   87 (120)
T 1mek_A           25 KYLLVEFYAPW------CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL----AQQY--GVRGYPTIKF   87 (120)
T ss_dssp             SEEEEEEECSS------CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSS----HHHH--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHH----HHHC--CCCcccEEEE
Confidence            45678899997      9999998877765         2366777888776653    3344  4667999976

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=95.88  E-value=0.0091  Score=49.09  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |+++++|+.+.      |++|.+++-+|+.+|++|+.+.++.. +...++++...+....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~~-~~~~~~~~~~~nP~g~vP~L~~~g~~l~   65 (221)
T 1b48_A            1 AAKPKLYYFNG------RGRMESIRWLLAAAGVEFEEEFLETR-EQYEKMQKDGHLLFGQVPLVEIDGMMLT   65 (221)
T ss_dssp             CCCCEEEBCSS------CTTTHHHHHHHHHHTCCCCCCBCCCH-HHHHHHHTTTCSSSSCSCEEEETTEEEC
T ss_pred             CCceEEEEeCC------CcchHHHHHHHHHcCCCceEEEeCch-HhHHHHHhcCCCCCCCCCEEEECCEEEe
Confidence            45789999885      99999999999999999999888642 2233444330013567999987765543

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=95.87  E-value=0.056  Score=38.82  Aligned_cols=56  Identities=11%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        29 lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   92 (115)
T 1thx_A           29 LVYFWASW------CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYK--VEGVPALRLVKGEQIL   92 (115)
T ss_dssp             EEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH----HHHHcC--CCceeEEEEEcCCEEE
Confidence            55666665      9999988776654    2  37788889887754    445555  678999877  88744

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=95.85  E-value=0.017  Score=48.29  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCe---eeCChHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGV---HIGDADA  176 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~---~iGG~d~  176 (251)
                      .+++++|+...      |++|.+++-+|+..|++|+.+.++... ..+++.+...  ...+|.+.. +|.   .|.....
T Consensus        24 ~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP--~g~vP~L~~~~g~~~~~l~eS~a   94 (246)
T 3rbt_A           24 TDKLRLYHVDM------NPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNP--RLKIPVLEIPTDQGDRFLFESVV   94 (246)
T ss_dssp             CSSEEEEECTT------CHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCT--TCBSCEEEECCTTSCEEECCHHH
T ss_pred             CCceEEEecCC------CccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCC--CCCCCEEEecCCCCceeeeCHHH
Confidence            56789999884      999999999999999999999886542 3345666654  679999999 888   8887776


Q ss_pred             HHHHH
Q psy15946        177 IERLN  181 (251)
Q Consensus       177 l~~l~  181 (251)
                      +.+..
T Consensus        95 I~~yL   99 (246)
T 3rbt_A           95 ICDYL   99 (246)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66643

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.84  E-value=0.0094  Score=49.28  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=25.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---CCccceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKD   61 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---~v~~~e~d   61 (251)
                      ....|++|+.+|      ||+|++....|++.   ++.+..+.
T Consensus        86 ~k~~vv~F~d~~------Cp~C~~~~~~l~~~~~~~v~v~~~~  122 (211)
T 1t3b_A           86 EKHVVTVFMDIT------CHYCHLLHQQLKEYNDLGITVRYLA  122 (211)
T ss_dssp             CSEEEEEEECTT------CHHHHHHHTTHHHHHHTTEEEEEEE
T ss_pred             CCEEEEEEECCC------CHhHHHHHHHHHHHHhCCcEEEEEE
Confidence            345899999997      99999988777664   45554443

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.83  E-value=0.023  Score=42.91  Aligned_cols=59  Identities=10%  Similarity=0.169  Sum_probs=42.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHH------H-H-cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQIL------R-T-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L------~-~-~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|++....+      . . .++.+..+|++.+.+...++.+.+  +...+|.+++
T Consensus        31 ~k~vlv~F~a~w------C~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~--~v~~~Pt~~~   97 (134)
T 2fwh_A           31 GKPVMLDLYADW------CVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHL--NVLGLPTILF   97 (134)
T ss_dssp             TSCEEEEEECTT------CHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------CHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHc--CCCCCCEEEE
Confidence            345788888998      99999976443      2 2 247777788876655566777777  5678999875

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=95.82  E-value=0.013  Score=47.27  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=54.3

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .++++|+..      .+++|.+++-+|+..|++|+.+.++.+.  ..++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   71 (204)
T 2ws2_A            2 VHYKLTYFN------GRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASM--PFGQLPVLEVDGKQLPQSVAIVRYL   71 (204)
T ss_dssp             CCEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGS--TTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CccEEEEeC------CCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcC--CCCCCCEEEECCEEeecHHHHHHHH
Confidence            357788887      4899999999999999999999886431  23444444  3678999999999888887766643

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=95.82  E-value=0.0058  Score=50.38  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +++|+.++      ||+|.+++-+|+.+|++|+.+.|..+  ...++.++.  ....+|++..+|..+
T Consensus         3 ~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~--P~g~vP~L~~~~~~l   60 (229)
T 3lxz_A            3 LKLYGFSV------SNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVS--PRGKVPVLETEHGFL   60 (229)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTS--TTSCSCEEEETTEEE
T ss_pred             EEEEeCCC------CchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhC--CCCCcCeEEeCCcee
Confidence            78999996      99999999999999999999988533  234565554  456799999887554

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=95.82  E-value=0.014  Score=47.56  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=55.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ++++|+..      .|++|.+++-+|+..|++|+.+.++...  ....++.+...  ...+|.+..+|..+.+...+.+.
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP--~g~vP~L~~~g~~l~eS~aI~~y   74 (216)
T 3ay8_A            3 SLKLYHFP------VSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNP--QHCVPTLDDNNFVLWESRAIACY   74 (216)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSS--SCCSSEEEETTEEEECHHHHHHH
T ss_pred             ceEEecCC------CCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCC--CCCCCeEEECCEEEEcHHHHHHH
Confidence            47788877      4999999999999999999998886432  22355666653  67999999999988887776664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        75 L   75 (216)
T 3ay8_A           75 L   75 (216)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=95.82  E-value=0.015  Score=44.13  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -|+.|+++|      |++|+.+...|++.      .+.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        53 vvv~f~~~~------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~  110 (140)
T 1v98_A           53 TLVDFFAPW------CGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG----LAARY--GVRSVPTLVL  110 (140)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHC--CCCccCEEEE
Confidence            577888887      99999999888762      46778888887765    44445  4677999876

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=95.81  E-value=0.011  Score=48.52  Aligned_cols=72  Identities=17%  Similarity=0.231  Sum_probs=55.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .++++|+..      .+++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+
T Consensus         2 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~   73 (221)
T 2imi_A            2 SNLVLYTLH------LSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLN--PQHTIPVLDDNGTIITESHAIMI   73 (221)
T ss_dssp             CCEEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEETTEEEESHHHHHH
T ss_pred             CceEEeeCC------CCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhC--cCCCCCEEEECCEEEeeHHHHHH
Confidence            357889887      4999999999999999999998886432  2334555554  36799999889998888877666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        74 yL   75 (221)
T 2imi_A           74 YL   75 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=95.81  E-value=0.012  Score=42.28  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=36.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+++...|++.     ++.+..+|++.+++..    +.+  +...+|.+++
T Consensus        18 ~~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~----~~~--~v~~~Pt~~~   77 (105)
T 4euy_A           18 QQLVLLFIKTEN------CGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIA----GRY--AVFTGPTVLL   77 (105)
T ss_dssp             SSEEEEEEEESS------CHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------------CCCCEEEE
T ss_pred             CCCEEEEEeCCC------CcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHH----Hhc--CCCCCCEEEE
Confidence            344677789998      99999999888773     5677788888887643    333  3566898865

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=95.80  E-value=0.0041  Score=50.36  Aligned_cols=62  Identities=15%  Similarity=0.121  Sum_probs=46.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         2 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   65 (211)
T 1gnw_A            2 GIKVFGHPA------SIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN--PFGQVPAFEDGDLKLF   65 (211)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTC--TTCCSCEEEETTEEEE
T ss_pred             eeEEEeCCC------CcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhC--CCCCCCEEEECCEEEe
Confidence            478999996      999999999999999999988776432  1223444443  4567999987765543

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=95.80  E-value=0.02  Score=46.82  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCC-CCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~-~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++++|+..      .|++|.+++-+|+..|++|+.+.++.. ....++.+..  +. ..+|.+..+|..+.+...+.+..
T Consensus         4 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vP~L~~~g~~l~eS~aI~~yL   74 (219)
T 2vo4_A            4 EVVLLDFW------PSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMN--PVHKKIPVLIHNGKPICESLIAVQYI   74 (219)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHC--TTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEecc------CCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhC--CCCCcCCEEEECCEeeehHHHHHHHH
Confidence            57899887      499999999999999999999888643 1223455554  23 58999999999888877766644


Q ss_pred             H
Q psy15946        182 E  182 (251)
Q Consensus       182 e  182 (251)
                      +
T Consensus        75 ~   75 (219)
T 2vo4_A           75 E   75 (219)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=95.80  E-value=0.035  Score=44.66  Aligned_cols=39  Identities=5%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCH
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSR   66 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~   66 (251)
                      ....|++|+.+|      ||+|.++...|++.      .+.|..+++..++
T Consensus        25 ~~~~vv~f~d~~------Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~~   69 (195)
T 3hd5_A           25 GKIEVLEFFAYT------CPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNA   69 (195)
T ss_dssp             TCEEEEEEECTT------CHHHHHHHHHHHHHHHTCCTTEEEEEEECCSSG
T ss_pred             CCeEEEEEECCC------CccHHHhhHHHHHHHHHCCCCeEEEEEecccCc
Confidence            345899999997      99999988777653      3556667775443

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.037  Score=39.88  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=38.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHH-------hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILR-------THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~-------~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|+       ..++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        25 ~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   89 (112)
T 3d6i_A           25 VLYFHTSW------AEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE----ISELFE--ISAVPYFIIIHKGTIL   89 (112)
T ss_dssp             EEEEECCC--------CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH----HHHHcC--CCcccEEEEEECCEEE
Confidence            45677776      999998887775       2357788889887754    445555  778999765  88754

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=95.76  E-value=0.021  Score=43.54  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.      .+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        24 ~~~vlv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~--~v~~~Pt~~~   84 (140)
T 3hz4_A           24 KKPVVVMFYSPA------CPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWT----AEKY--GVQGTPTFKF   84 (140)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHH----HHHH--TCCEESEEEE
T ss_pred             CCcEEEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhH----HHHC--CCCcCCEEEE
Confidence            445788899998      99999998887763      277788888887663    4445  4667898876

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=95.76  E-value=0.03  Score=39.71  Aligned_cols=56  Identities=16%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        24 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   87 (107)
T 2i4a_A           24 LVDFWAEW------CGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE----TPNAYQ--VRSIPTLMLVRDGKVI   87 (107)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------ChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH----HHHhcC--CCccCEEEEEeCCEEE
Confidence            45666665      99999888777542      47788888877654    444554  678999877  88754

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=95.75  E-value=0.038  Score=39.11  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        24 ~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   86 (105)
T 3m9j_A           24 VVDFSATW------CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASESE--VKSMPTFQFFKKGQKV   86 (105)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHH----HHHHTT--CCBSSEEEEEETTEEE
T ss_pred             EEEEECCC------ChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHH----HHHHcC--CCcCcEEEEEECCeEE
Confidence            45566675      99999888887663     57788888887754    444555  778999766  78754

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=95.75  E-value=0.0046  Score=50.33  Aligned_cols=71  Identities=15%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ++.+|+...      |++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+.
T Consensus         2 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~y   73 (216)
T 1aw9_A            2 PLKLYGMPL------SPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALN--PFGQIPALVDGDEVLFESRAINRY   73 (216)
T ss_dssp             CEEEESCTT------CHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTC--TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEecCC------CccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhC--CCCCcCEEEECCEEeeCHHHHHHH
Confidence            467888874      999999999999999999998876432  1122333443  367999999999999888877764


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (216)
T 1aw9_A           74 I   74 (216)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=95.75  E-value=0.012  Score=48.64  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=25.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc---CCccceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKD   61 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---~v~~~e~d   61 (251)
                      ....|++|+.+|      ||+|++....|++.   ++.+..+.
T Consensus        86 ~k~~vv~F~d~~------Cp~C~~~~~~l~~l~~~~v~v~~~~  122 (216)
T 1eej_A           86 EKHVITVFTDIT------CGYCHKLHEQMADYNALGITVRYLA  122 (216)
T ss_dssp             CCEEEEEEECTT------CHHHHHHHTTHHHHHHTTEEEEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHhCCcEEEEEE
Confidence            345799999998      99999988777654   55554443

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=95.73  E-value=0.013  Score=49.26  Aligned_cols=61  Identities=13%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .|++|+.+.      ||+|.+++-+|+..|++|+.+.++...  ....++.++.  ....+|++..+|..+
T Consensus         9 ~~~ly~~~~------sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~gkVPvL~d~g~~l   71 (247)
T 2c3n_A            9 GLELYLDLL------SQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVN--PLKKVPALKDGDFTL   71 (247)
T ss_dssp             CEEEEECTT------SHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTEEE
T ss_pred             ceEEeecCC------ChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCcCcEEEECCEEE
Confidence            799999996      999999999999999999988776432  2234566664  456799998766544

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=95.73  E-value=0.019  Score=49.85  Aligned_cols=71  Identities=10%  Similarity=0.083  Sum_probs=56.1

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ..+++|+...      +++|.+++-+|+..|++|+.+.++.. ....++..+.+ +...+|.+.++|..+.+...+.+.
T Consensus         2 ~~~~Ly~~~~------sp~~~kvr~~L~~~gi~ye~~~v~~~-~~~~~~~~~n~-P~g~vPvL~~~g~~l~eS~aI~~y   72 (310)
T 3ic8_A            2 SELILHHYPT------SLFAEKARLMLGFKGVNWRSVTIPSI-MPKPDLTALTG-GYRKTPVLQIGADIYCDTALMARR   72 (310)
T ss_dssp             CCEEEEECTT------CGGGHHHHHHHHHHTCEEEEEECCSS-SCCHHHHHHHS-SCCCSCEEEETTEEECSHHHHHHH
T ss_pred             CeEEEEecCC------CcHHHHHHHHHHhcCCCcEEEEcCCC-CCcHHHHHhcC-CCCceeEEEECCEEEcCHHHHHHH
Confidence            3578998884      99999999999999999999988652 13455667762 367999999999998887766554

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=95.72  E-value=0.02  Score=41.94  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      |+-|+++|      |++|+.+...|++.     ++.|..+|++.+++    +.+.+  +..++|++++
T Consensus        24 vv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~--~V~~~PT~~~   79 (105)
T 3zzx_A           24 VIDFYATW------CGPCKMIAPKLEELSQSMSDVVFLKVDVDECED----IAQDN--QIACMPTFLF   79 (105)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHT--TCCBSSEEEE
T ss_pred             EEEEECCC------CCCccCCCcchhhhhhccCCeEEEEEecccCHH----HHHHc--CCCeecEEEE
Confidence            44489998      99999999888763     45677788887766    44555  5677998864

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=95.72  E-value=0.0051  Score=51.17  Aligned_cols=63  Identities=11%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-eccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~g   94 (251)
                      .++++||+.++      ||+|.+++-+|+.+|++|+.+.|+... ..+++.++.  ....+|++.. +|..+.
T Consensus        21 ~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~n--P~g~vP~L~~~~g~~l~   84 (239)
T 3q18_A           21 EGLIRIYSMRF------CPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKH--PFGHIPVLETSQSQLIY   84 (239)
T ss_dssp             TTCEEEEECTT------CHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTS--TTCCSCEEECTTCCEEC
T ss_pred             CCeEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcC--CCCCCCEEEeCCCceee
Confidence            45799999996      999999999999999999988876542 122344443  4567999988 665543

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=95.72  E-value=0.01  Score=48.21  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~   93 (251)
                      +++|+.+.      ||+|.+++-+|+.+|++|+.+.|+.... .++++++.  ....+|++. .+|..+
T Consensus         3 ~~Ly~~~~------sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~n--P~g~vP~L~~~~g~~l   62 (213)
T 3m0f_A            3 LKLIGMLD------SPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAIN--PVVKAPTLVCEGGEVL   62 (213)
T ss_dssp             CEEESCTT------SHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHC--TTCCSSEEECTTCCEE
T ss_pred             EEEecCCC------CCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcC--CCCCcCeEEeCCCcEE
Confidence            68999996      9999999999999999999988875433 45677665  345799998 555544

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=95.71  E-value=0.0076  Score=48.73  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ++++|+..      .|++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+.
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~y   73 (211)
T 1gnw_A            2 GIKVFGHP------ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN--PFGQVPAFEDGDLKLFESRAITQY   73 (211)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTC--TTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eeEEEeCC------CCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhC--CCCCCCEEEECCEEEeCHHHHHHH
Confidence            46789888      4999999999999999999998876432  1223444443  367899999999989887776664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (211)
T 1gnw_A           74 I   74 (211)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=95.71  E-value=0.013  Score=48.35  Aligned_cols=72  Identities=14%  Similarity=0.073  Sum_probs=54.3

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++..  .....++.+..  +...+|.+..+|..|.+...+.+
T Consensus        22 ~m~~Ly~~~------~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~   93 (229)
T 4iel_A           22 SMLHILGKI------PSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALN--PNGLVPVIKDDGFVLWESNTIIR   93 (229)
T ss_dssp             CCEEEESCT------TCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTC--TTCCSCEEEETTEEEECHHHHHH
T ss_pred             ceEEEecCC------CCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcC--CCCCCCEEEECCEEEEeHHHHHH
Confidence            347889887      499999999999999999999988653  22344555554  36789999999999988777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        94 yL   95 (229)
T 4iel_A           94 YL   95 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=95.70  E-value=0.028  Score=40.44  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++.+++..+    ..+  ...+|.+++  +|+.+
T Consensus        30 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~~--v~~~Pt~~~~~~G~~~   92 (113)
T 1ti3_A           30 VVDFTASW------CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAE----EWN--VEAMPTFIFLKDGKLV   92 (113)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHH----HHH--CSSTTEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHH----hCC--CCcccEEEEEeCCEEE
Confidence            45566665      99999888776553     57788888887765443    333  568899766  78743

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=95.68  E-value=0.025  Score=44.58  Aligned_cols=34  Identities=9%  Similarity=0.069  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc----C-Cccceeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----L-VKFDDKDV   62 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~-v~~~e~dv   62 (251)
                      ...|++|+..|      ||+|.+....|++.    + +.+..+++
T Consensus        23 ~v~i~~f~d~~------Cp~C~~~~~~l~~l~~~~~~v~~~~~~~   61 (175)
T 3gyk_A           23 DVTVVEFFDYN------CPYCRRAMAEVQGLVDADPNVRLVYREW   61 (175)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CEEEEEEECCC------CccHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            45789999997      99999987776653    2 45555553

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.66  E-value=0.01  Score=43.77  Aligned_cols=39  Identities=28%  Similarity=0.728  Sum_probs=32.3

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.+           +|+.|+|+-+++          ..+|+.|+-.|.++
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII----------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC----------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC----------CCcCCCCCCeeEEE
Confidence            4689999999854           899999998873          25899999988764

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=95.66  E-value=0.023  Score=44.35  Aligned_cols=55  Identities=11%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|++....|++.      .+.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        64 ~~~vlv~F~a~w------C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----l~~~~--~i~~~Pt~~~  124 (155)
T 2ppt_A           64 DLPLLVDFWAPW------CGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA----VAGRH--RIQGIPAFIL  124 (155)
T ss_dssp             SSCEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------CHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH----HHHHc--CCCcCCEEEE
Confidence            446788899998      99999998887752      47888888887765    44555  4677999976

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=95.64  E-value=0.037  Score=43.61  Aligned_cols=23  Identities=17%  Similarity=0.177  Sum_probs=18.0

Q ss_pred             CCCCceEEECCeeeCChHHHHHH
Q psy15946        158 VINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       158 ~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ...+|.++|+|+.+-|+.....|
T Consensus       142 v~gtPt~~i~g~~~~G~~~~~~l  164 (175)
T 3gyk_A          142 FNGTPSFVVEDALVPGFVEQSQL  164 (175)
T ss_dssp             CCSSSEEEETTEEECSCCCHHHH
T ss_pred             CccCCEEEECCEEeeCCCCHHHH
Confidence            77899999999998876544443

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=95.63  E-value=0.022  Score=46.84  Aligned_cols=71  Identities=11%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCC-CCCceEEECCeeeCChHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~-~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++++|+...      |++|.+++-+|+..|++|+.+.++.. ....++.+..  .. ..+|.+..+|..|.+...+.+.
T Consensus         5 ~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~n--P~~g~vP~L~~~g~~l~eS~aI~~y   75 (230)
T 1gwc_A            5 DDLKLLGAWP------SPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSN--PVHKKIPVLIHNGAPVCESMIILQY   75 (230)
T ss_dssp             CCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHS--TTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CcEEEEeCCC------ChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhC--CCCCccCEEEECCEEeecHHHHHHH
Confidence            4688998874      99999999999999999999887643 1223445553  23 5899999999988887776664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        76 L   76 (230)
T 1gwc_A           76 I   76 (230)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=95.62  E-value=0.0033  Score=51.22  Aligned_cols=63  Identities=13%  Similarity=0.189  Sum_probs=46.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      ++++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+..
T Consensus         2 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~e   66 (216)
T 1aw9_A            2 PLKLYGMPL------SPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALN--PFGQIPALVDGDEVLFE   66 (216)
T ss_dssp             CEEEESCTT------CHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTC--TTCCSCEEEETTEEEES
T ss_pred             ceEEEecCC------CccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhC--CCCCcCEEEECCEEeeC
Confidence            478999996      999999999999999999998876432  1112344443  45679999887765543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=95.61  E-value=0.035  Score=41.73  Aligned_cols=54  Identities=17%  Similarity=0.073  Sum_probs=43.8

Q ss_pred             CCcchHHHHHHHHhc----CCceeEEEcCCCHHHHHHHHHHhCCCCC-CCceE--EECCeeeC
Q psy15946        117 TYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERLGTDVI-NVPQI--FVEGVHIG  172 (251)
Q Consensus       117 tc~~C~~~k~lL~~~----~v~~~e~dv~~~~~~~~el~~~~g~~~~-~vP~v--fi~g~~iG  172 (251)
                      +|+-|..+...|++.    .+++..+||..+++.-.++.+.+|  .. ..||+  |-||+.+.
T Consensus        35 wCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~--V~h~sPq~il~k~G~~v~   95 (112)
T 3iv4_A           35 TCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTN--VKHESPQAFYFVNGEMVW   95 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHT--CCCCSSEEEEEETTEEEE
T ss_pred             cCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhC--CccCCCeEEEEECCEEEE
Confidence            599999887777654    788999999998888888999997  55 58995  55887664

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=95.59  E-value=0.034  Score=39.50  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=40.3

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|+.....|++.      .+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        21 ~~~~lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~--~i~~~Pt~~~   81 (109)
T 3tco_A           21 NKLVLVDCWAEW------CAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI----ADKY--SVLNIPTTLI   81 (109)
T ss_dssp             SSEEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHH----HHHT--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHH----HHhc--CcccCCEEEE
Confidence            344678889997      99999999887763      366778888877763    4445  4677898754

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=95.58  E-value=0.024  Score=46.73  Aligned_cols=71  Identities=21%  Similarity=0.247  Sum_probs=55.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +..+++|+...      +++|.+++-+|+..|++|+.+.++.  +...++.+..  +...+|.+..+|..|.+...+.+.
T Consensus        25 m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~n--P~g~vPvL~~~g~~l~eS~aI~~Y   94 (225)
T 2hnl_A           25 MEKYTLTYFNG------RGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRT--PFGHVPMLNVSGNVLGESHAIELL   94 (225)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGS--SSSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCCeEEEEcCC------CCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCC--CCCCCCEEEECCEEEecHHHHHHH
Confidence            44688998874      8999999999999999999998864  2334555554  367899999999988887776664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        95 L   95 (225)
T 2hnl_A           95 L   95 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=95.58  E-value=0.013  Score=48.09  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=47.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +++|..++      +|+|++++-+|+.+|++|+.+.|+.  ......++.++.  ....+|++..+|..+.
T Consensus         3 mkLY~~~~------S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~g~~l~   65 (216)
T 3vk9_A            3 IDLYYVPG------SAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLN--PQHTVPTLVDDGLSIW   65 (216)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTEEEC
T ss_pred             EEEEeCCC------ChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhC--CCCccceEecCCceee
Confidence            68999996      9999999999999999998876653  333456677764  3467999987766543

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=95.57  E-value=0.074  Score=39.01  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|.+    +  .+.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        35 lv~f~a~~------C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   98 (119)
T 1w4v_A           35 VVDFHAQW------CGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD----LAIEYE--VSAVPTVLAMKNGDVV   98 (119)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHcC--CCcccEEEEEeCCcEE
Confidence            55666675      9999988776654    2  47788888877654    445555  778999877  88743

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=95.55  E-value=0.024  Score=42.82  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|++....|++.     ++.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        47 k~vvv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~  105 (139)
T 3d22_A           47 KIVLANFSARW------CGPSRQIAPYYIELSENYPSLMFLVIDVDELSD----FSASW--EIKATPTFFF  105 (139)
T ss_dssp             CCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHT--TCCEESEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHH----HHHHc--CCCcccEEEE
Confidence            45678888897      99999998888763     57888888887765    44455  4667898765

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=95.54  E-value=0.02  Score=46.26  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~  179 (251)
                      .+++|+..      .+++|.+++-+|+..|++|+.+.++..  +....++.+..  ....+|.+.+ +|..+.+...+.+
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~d~g~~l~eS~aI~~   74 (210)
T 3m3m_A            3 LYKVYGDY------RSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKN--PNGKIPVLELEDGTCLWESNAILN   74 (210)
T ss_dssp             CEEEEECT------TSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTC--TTCCSCEEEETTSCEEECHHHHHH
T ss_pred             eEEEeCCC------CCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhC--CCCCCCEEEecCCEEEecHHHHHH
Confidence            47888887      499999999999999999999988642  22334555554  3679999996 7888887777766


Q ss_pred             HHHc
Q psy15946        180 LNES  183 (251)
Q Consensus       180 l~e~  183 (251)
                      ..+.
T Consensus        75 yL~~   78 (210)
T 3m3m_A           75 FLAD   78 (210)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            5554

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=95.52  E-value=0.014  Score=49.31  Aligned_cols=62  Identities=10%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .|++++||..+.      |++|.+++-+|+.+|++|+.+.++.+.  ..+++++.  ....+|++..+|..+
T Consensus        46 ~m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~e~~~~n--P~gkVPvL~~~g~~l  107 (249)
T 1m0u_A           46 IKHSYTLFYFNV------KALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTM--PMGQMPVLEVDGKRV  107 (249)
T ss_dssp             -CCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGS--GGGCSCEEEETTEEE
T ss_pred             CCCCeEEEEcCC------cccHHHHHHHHHHcCCCcEEEEeCHHH--HHHHhhcC--CCCCCCEEEECCEEE
Confidence            367899999995      999999999999999999999887432  34555543  345799998776554

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=95.52  E-value=0.024  Score=47.84  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE---CCeeeCCh
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV---EGVHIGDA  174 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi---~g~~iGG~  174 (251)
                      .+..+++|+..      .|++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..   +|..|...
T Consensus        16 ~m~~~~Ly~~~------~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~g~~l~ES   87 (260)
T 1k0d_A           16 PLEGYTLFSHR------SAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN--PNARVPALIDHGMDNLSIWES   87 (260)
T ss_dssp             CSSSEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEEGGGTTEEEESH
T ss_pred             CCCcEEEEcCC------CCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhC--CCCCcCEEEecCCCCeEEECH
Confidence            35678999887      4999999999999999999998776432  2335565554  3678999988   78888777


Q ss_pred             HHHHHH
Q psy15946        175 DAIERL  180 (251)
Q Consensus       175 d~l~~l  180 (251)
                      ..+.+.
T Consensus        88 ~aI~~Y   93 (260)
T 1k0d_A           88 GAILLH   93 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766553

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=95.50  E-value=0.028  Score=45.23  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=53.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++++|+..      .+++|.+++-+|+..|++|+.+.++..  ...++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   70 (202)
T 2gsq_A            2 KYTLHYFP------LMGRAELCRFVLAAHGEEFTDRVVEMA--DWPNLKATM--YSNAMPVLDIDGTKMSQSMCIARHL   70 (202)
T ss_dssp             CEEEEECS------SSGGGHHHHHHHHHTTCCCEEEECCTT--THHHHGGGS--GGGSSCEEEETTEEECCHHHHHHHH
T ss_pred             CcEEEEcC------CCchhHHHHHHHHHcCCCeeEEEeCHH--HHHhhcccC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence            36788877      389999999999999999999988753  234555544  3568999999999998887776643

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=95.50  E-value=0.015  Score=47.38  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee-ecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      +++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++.. +|..+
T Consensus         1 m~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~~g~~l   63 (219)
T 3f6d_A            1 MDFYYLPG------SAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLN--PQHCIPTLVDEDGFVL   63 (219)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHC--TTCCSCEEECTTSCEE
T ss_pred             CEEEeCCC------CCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhC--CCCccCeEEeCCCCEE
Confidence            47899996      999999999999999999988776432  2245566665  4568999988 66554

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=95.47  E-value=0.029  Score=47.02  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .|++|....      +++|.+++-+|+..||+|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+.
T Consensus         9 ~~~ly~~~~------sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~gkVPvL~d~g~~l~ES~aI~~Y   80 (247)
T 2c3n_A            9 GLELYLDLL------SQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVN--PLKKVPALKDGDFTLTESVAILLY   80 (247)
T ss_dssp             CEEEEECTT------SHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTEEEECHHHHHHH
T ss_pred             ceEEeecCC------ChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCcCcEEEECCEEEEcHHHHHHH
Confidence            588999884      999999999999999999998886432  2334566665  367999999999888887776664

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=95.46  E-value=0.016  Score=47.59  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +++|+..      .|++|.+++-+|...|++|+.+.+..+  ...++.++.  +...+|.+.++|..|.+...+.+..
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~--P~g~vP~L~~~~~~l~eS~aI~~yL   70 (229)
T 3lxz_A            3 LKLYGFS------VSNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVS--PRGKVPVLETEHGFLSETSVILDYI   70 (229)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTS--TTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             EEEEeCC------CCchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhC--CCCCcCeEEeCCceeecHHHHHHHH
Confidence            6788887      499999999999999999999998533  344555554  3679999999998888877766643

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=95.46  E-value=0.065  Score=44.14  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=54.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++..+ ...++......+...+|.+..+|..+.+...+.+..
T Consensus         3 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   75 (229)
T 1vf1_A            3 AKPVLYYFN------GRGKMESIRWLLAAAGVEFEEVFLETRE-QYEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYI   75 (229)
T ss_dssp             CCCEEEECS------SCTTTHHHHHHHHHTTCCCEEEECCSHH-HHHHHHHHTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCeEEEEeC------CCchhHHHHHHHHHcCCCCeeEecCcHH-HHHHHHHhcCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            357788876      4899999999999999999999986432 234455551113678999999999888877766643

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=95.46  E-value=0.052  Score=39.34  Aligned_cols=56  Identities=18%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|++      .++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        21 lv~f~a~w------C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   84 (112)
T 2voc_A           21 LADFWAPW------CGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE----TAGKYG--VMSIPTLLVLKDGEVV   84 (112)
T ss_dssp             EEEEECTT------BGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS----HHHHTT--CCSBSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHcC--CCcccEEEEEeCCEEE
Confidence            45666675      9999988877654      257788888877654    444555  678999877  88754

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=95.45  E-value=0.032  Score=45.94  Aligned_cols=72  Identities=13%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECC-----------
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEG-----------  168 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g-----------  168 (251)
                      .++++|+...      +++|.+++-+|+..||+|+.+.++..  .....++.++..  ...+|.+.+++           
T Consensus         8 ~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP--~g~vP~L~~~~g~~~~~~~~~~   79 (235)
T 3n5o_A            8 PNFELYGYFR------SSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNP--TNTVPLLVVSNINNTVSPSSAS   79 (235)
T ss_dssp             CEEEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT--TCCSCEEEEESSCCSSSTTCSE
T ss_pred             CCeEEEecCC------CcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCC--CCCCCEEEeCCCccccccccCc
Confidence            3588998874      99999999999999999999988643  234456777754  67999999988           


Q ss_pred             eeeCChHHHHHHH
Q psy15946        169 VHIGDADAIERLN  181 (251)
Q Consensus       169 ~~iGG~d~l~~l~  181 (251)
                      ..|.....+.+..
T Consensus        80 ~~l~eS~aI~~yL   92 (235)
T 3n5o_A           80 FSIGQSLAALEYL   92 (235)
T ss_dssp             EEECSHHHHHHHH
T ss_pred             eeehhHHHHHHHH
Confidence            8888877766643

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=95.45  E-value=0.026  Score=46.91  Aligned_cols=70  Identities=14%  Similarity=0.098  Sum_probs=55.5

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCC-CCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDV-INVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~-~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+.+|+..      .|++|.+++-+|+..|++|+.+.++.. ....++.+...  . ..+|.+..+|..+.+...+.+..
T Consensus        12 ~~~Ly~~~------~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP--~~g~vPvL~~~g~~l~eS~aI~~YL   82 (231)
T 4dej_A           12 VMTLYSGK------DDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNP--YPEAKPTLVDRELVLYNAQIIMEYL   82 (231)
T ss_dssp             SCEEEECS------SCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCC--SSSCCSEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEcCC------CChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            47889887      499999999999999999999988654 23345666653  6 78999999999988877766643

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=95.45  E-value=0.011  Score=49.15  Aligned_cols=73  Identities=10%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIE  178 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~  178 (251)
                      ..+++++|+...      |++|.+++-+|+..|++|+.+.++... ..+++.+..  ....+|.+.+ +|..|.....+.
T Consensus        20 ~~~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~n--P~g~vP~L~~~~g~~l~eS~aI~   90 (239)
T 3q18_A           20 PEGLIRIYSMRF------CPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKH--PFGHIPVLETSQSQLIYESVIAC   90 (239)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTS--TTCCSCEEECTTCCEECSHHHHH
T ss_pred             CCCeEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcC--CCCCCCEEEeCCCceeecHHHHH
Confidence            356799999884      999999999999999999999886542 122344443  3678999999 898888877766


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      +..
T Consensus        91 ~yL   93 (239)
T 3q18_A           91 EYL   93 (239)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=95.45  E-value=0.082  Score=38.18  Aligned_cols=57  Identities=16%  Similarity=0.307  Sum_probs=40.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeeeC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHIG  172 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~iG  172 (251)
                      |+.|+++|      |+.|..+...|++.     ++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+.
T Consensus        28 lv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~~   91 (109)
T 3f3q_A           28 VVDFYATW------CGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD----VAQKNE--VSAMPTLLLFKNGKEVA   91 (109)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCc------CHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcC--CCccCEEEEEECCEEEE
Confidence            45577776      99999888877653     57788888887755    445555  778999765  786543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=95.44  E-value=0.041  Score=41.62  Aligned_cols=58  Identities=10%  Similarity=-0.083  Sum_probs=41.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeeccCCH-----HHHHHHHHHhCCCCCCCCceeee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSR-----ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv~~d~-----~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .-|+.|+++|      |++|++....|++.    ++.+..+|+..+.     +...++.+.+  +...+|.+++-
T Consensus        33 ~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~--~v~~~Pt~~~~   99 (135)
T 3emx_A           33 DAILAVYSKT------CPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKA--GVEGTPTLVFY   99 (135)
T ss_dssp             SEEEEEEETT------CHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHH--TCCSSSEEEEE
T ss_pred             cEEEEEECCc------CHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHc--CCceeCeEEEE
Confidence            6788899998      99999988887763    4667777774432     2334555566  56789988763

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=95.44  E-value=0.029  Score=41.73  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=40.9

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|.++|      |++|++....|++.           .+.+..+|++.+.+    +.+.+  +...+|.+++
T Consensus        33 ~~~vlv~F~a~w------C~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   98 (127)
T 3h79_A           33 EKDVFVLYYVPW------SRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD----VIERM--RVSGFPTMRY   98 (127)
T ss_dssp             TCEEEEEEECTT------CHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCCEEEEEECCc------cHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh----HHHhc--CCccCCEEEE
Confidence            345788899998      99999999888874           25677788877665    44455  4677998864

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=95.44  E-value=0.012  Score=49.23  Aligned_cols=61  Identities=8%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +++|+.+.      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         3 ~~Ly~~~~------sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~g~~l~   65 (244)
T 1ljr_A            3 LELFLDLV------SQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN--SLGKLPTLKDGDFILT   65 (244)
T ss_dssp             CEEEECTT------SHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEE
T ss_pred             EEEEecCC------CcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhC--CCCcCcEEEECCEEEE
Confidence            68999986      999999999999999999998876532  2234565543  4567999987665543

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=95.44  E-value=0.013  Score=48.51  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIF-VEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~-i~g~~~   93 (251)
                      +..+++|+.+.      ||+|.+++-+|+.+|++|+.+.|+..  .....++.++.  ....+|++. .+|..+
T Consensus        20 ~~m~~Ly~~~~------sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vPvL~~~~g~~l   85 (230)
T 4hz2_A           20 FQSMRIYGMNG------SGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALN--AIGKVPVVVLDDGTAL   85 (230)
T ss_dssp             --CCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHC--TTCCSCEEECTTSCEE
T ss_pred             hhhheeeCCCC------CccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhC--CCCCCCEEEecCCEEe
Confidence            35689999996      99999999999999999998887643  22345566665  456799998 665544

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=95.43  E-value=0.013  Score=48.12  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCC--ccceeeccCCH--HHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVFMSR--ETQQEFKERLGTDVINVPQIF-VEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v--~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~-i~g~~~   93 (251)
                      +++++|+.+.      ||+|.+++-+|+.+|+  +|+.++|+...  ....++.++.  ....+|++. .+|..+
T Consensus        17 ~~~~Ly~~~~------sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~g~~l   83 (233)
T 3ibh_A           17 QKMIIYDTPA------GPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKN--YSGTVPVLELDDGTLI   83 (233)
T ss_dssp             --CEEEECTT------CHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEECTTCCEE
T ss_pred             cceEEecCCC------CCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccC--CCCccceEEecCCeEE
Confidence            4799999996      9999999999999999  99888776432  2345666665  456899998 555544

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.43  E-value=0.027  Score=40.80  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        32 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   94 (118)
T 2vm1_A           32 IIDFTASW------CGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKD----VAEAYN--VEAMPTFLFIKDGEKV   94 (118)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT--CCSBSEEEEEETTEEE
T ss_pred             EEEEECCC------CHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHH----HHHHcC--CCcCcEEEEEeCCeEE
Confidence            45566675      99999888777553     57788888877654    444555  678999766  88753

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=95.42  E-value=0.034  Score=41.45  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|++.     ++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        42 vv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~--v~~~Pt~~~~~~G~~~  104 (124)
T 1xfl_A           42 VVDFTASW------CGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDWA--IQAMPTFMFLKEGKIL  104 (124)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHHcC--CCccCEEEEEECCEEE
Confidence            45567776      99999888777653     57777888876654    445555  778999776  88754

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=95.41  E-value=0.05  Score=44.47  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++..+. ..++.+....+...+|.+..+|..|.....+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~yL   74 (221)
T 1k3y_A            2 EKPKLHYFN------ARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYI   74 (221)
T ss_dssp             CCCEEEEES------SSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeC------CCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            346788877      49999999999999999999998864322 34455441124678999999999888877766643

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=95.40  E-value=0.046  Score=41.18  Aligned_cols=54  Identities=19%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+.....|.+.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        52 k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~v~~~Pt~~~  111 (141)
T 3hxs_A           52 KPAIVDFYADW------CGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE----LARDF--GIQSIPTIWF  111 (141)
T ss_dssp             SCEEEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH----HHHHc--CCCCcCEEEE
Confidence            45688888997      99999988887763      36677788887765    44455  4677999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=95.39  E-value=0.037  Score=42.80  Aligned_cols=56  Identities=16%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+.+|      |+.|..+...|++.     ++.|..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        36 vv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   98 (153)
T 2wz9_A           36 VVHFWAPW------APQCAQMNEVMAELAKELPQVSFVKLEAEGVPE----VSEKYE--ISSVPTFLFFKNSQKI   98 (153)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHH----HHHHcC--CCCCCEEEEEECCEEE
Confidence            45667776      99999988877654     68888999987754    444555  778999876  88754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=95.38  E-value=0.051  Score=38.26  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        23 ~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   85 (104)
T 2vim_A           23 VVDFFAQW------CGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE----AAAKYS--VTAMPTFVFIKDGKEV   85 (104)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHH----HHHHcC--CccccEEEEEeCCcEE
Confidence            44566665      99999888877653     68888889887754    444554  678999766  77653

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=95.38  E-value=0.0089  Score=45.11  Aligned_cols=54  Identities=7%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|++.      .+.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        41 k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~  100 (128)
T 2o8v_B           41 GAILVDFWAEW------CGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKY--GIRGIPTLLL  100 (128)
T ss_dssp             SEEEEEEECSS------CHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGG--TCCSSSEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHc--CCCccCEEEE
Confidence            44678888897      99999988777652      36777788877665    33344  4667899977

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=95.36  E-value=0.025  Score=45.98  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERL  180 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l  180 (251)
                      .++++|+ +      .+++|.+++-+|+..|++|+.+.++   ....++.+..  ....+|.+.. +|..|.+...+.+.
T Consensus         2 ~~~~Ly~-~------~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~n--P~g~vP~L~~~~g~~l~eS~aI~~y   69 (219)
T 1nhy_A            2 SQGTLYA-N------FRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDF--PLKKVPAFVGPKGYKLTEAMAINYY   69 (219)
T ss_dssp             TTCEEEC-C------SSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHC--TTCCSSEEECGGGCEEESHHHHHHH
T ss_pred             CceEEec-C------CCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHC--CCCCCCeEEcCCCCEEecHHHHHHH
Confidence            3578888 5      3899999999999999999999886   2344566665  3678999998 88888877766553

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=95.34  E-value=0.027  Score=46.99  Aligned_cols=69  Identities=10%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++|+..      .+++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+.
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~g~~l~eS~aI~~Y   73 (244)
T 1ljr_A            3 LELFLDL------VSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN--SLGKLPTLKDGDFILTESSAILIY   73 (244)
T ss_dssp             CEEEECT------TSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEecC------CCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhC--CCCcCcEEEECCEEEEchHHHHHH
Confidence            5788877      4999999999999999999999886532  2335565554  367899999999999887776664

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=95.34  E-value=0.028  Score=41.97  Aligned_cols=54  Identities=9%  Similarity=0.191  Sum_probs=39.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|++....|++.      ++.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        43 k~vlv~F~a~w------C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~  102 (128)
T 3ul3_B           43 TVIVLYFFAKW------CQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES----LARKF--SVKSLPTIIL  102 (128)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHH----HHHHT--TCCSSSEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHc--CCCCcCEEEE
Confidence            34667788997      99999998888763      35667778777765    44555  4677999876

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=95.34  E-value=0.026  Score=45.70  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .|++|.+++-+|+..|++|+.+.++.... ..++.+...  ...+|.+. .||..+.+...+.+..
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP--~g~vP~L~~~~g~~l~eS~aI~~yL   72 (213)
T 3m0f_A            3 LKLIGML------DSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINP--VVKAPTLVCEGGEVLMDSSLIIDYL   72 (213)
T ss_dssp             CEEESCT------TSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCT--TCCSSEEECTTCCEEESHHHHHHHH
T ss_pred             EEEecCC------CCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCC--CCCcCeEEeCCCcEEEcHHHHHHHH
Confidence            5688777      49999999999999999999998865432 566777754  67899998 6888888777666543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=95.33  E-value=0.031  Score=40.78  Aligned_cols=56  Identities=16%  Similarity=0.276  Sum_probs=40.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.    ++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        37 vv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   98 (117)
T 2xc2_A           37 VVDFFATW------CGPCKTIAPLFKELSEKYDAIFVKVDVDKLEE----TARKYN--ISAMPTFIAIKNGEKV   98 (117)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHTTSSSEEEEEETTTSHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHhHHHHhHHHHHHHHHcCcEEEEEECCccHH----HHHHcC--CCccceEEEEeCCcEE
Confidence            45667776      99999888877654    67778888876654    444555  778999776  78754

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=95.33  E-value=0.1  Score=36.74  Aligned_cols=56  Identities=7%  Similarity=0.181  Sum_probs=38.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        22 ~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   85 (105)
T 1fb6_A           22 MVDFWAPW------CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYN--IRSIPTVLFFKNGERK   85 (105)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------ChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH----HHHhCC--CCcccEEEEEeCCeEE
Confidence            55666665      9999988777754    3  36677788877654    444554  678999877  77743

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=95.32  E-value=0.05  Score=38.91  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE--ECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf--i~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.++  -+|+.+
T Consensus        25 ~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   87 (107)
T 1gh2_A           25 VVKFTMRG------CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNN--ISATPTFQFFRNKVRI   87 (107)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------ChhhHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHhcC--CCcccEEEEEECCeEE
Confidence            45677776      99999988877653     57888899987754    445555  67899864  477644

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=95.31  E-value=0.024  Score=45.80  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      |+++++|..+.      +++|.+++-+|+..|++|+.+.++...  ..++....  ....+|++..+|.
T Consensus         3 m~~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~--P~g~vP~L~~~~~   61 (211)
T 1oe8_A            3 GDHIKVIYFNG------RGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTI--PGGRLPAVKITDN   61 (211)
T ss_dssp             -CEEEEEESCT------TSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGS--TTSCSCEEEEECT
T ss_pred             CCceEEEEeCC------CChHHHHHHHHHHcCCCceEEEechHh--HHHhcccC--CCCCCCEEEECCc
Confidence            56789998875      999999999999999999999887532  23344333  4567999988764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.30  E-value=0.06  Score=40.64  Aligned_cols=54  Identities=17%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE----CCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV----EGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi----~g~  169 (251)
                      |+.|+++|      |+.|..+...|++..    +.+..+|++.+.+    +.+..+  ...+|.+++    +|+
T Consensus        44 vv~F~a~w------C~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           44 VIKFGAVW------CKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPK----LNDQHN--IKALPTFEFYFNLNNE  105 (133)
T ss_dssp             EEEEECTT------CHHHHHTHHHHHGGGGTEECEEEEEETTTCHH----HHHHTT--CCSSSEEEEEEEETTE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHhcCEEEEEEeccchHH----HHHhcC--CCCCCEEEEEEecCCC
Confidence            56677776      999999998887664    5566777776643    455555  778999754    887

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=95.30  E-value=0.048  Score=38.75  Aligned_cols=55  Identities=16%  Similarity=0.258  Sum_probs=38.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |++|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.
T Consensus        23 lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~   85 (107)
T 1dby_A           23 LVDFWAPW------CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYG--IRSIPTIMVFKGGKK   85 (107)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHT--CCSSCEEEEESSSSE
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCC--CCcCCEEEEEeCCEE
Confidence            45666665      9999988877654    3  36777888877754    444455  678999877  6764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=95.29  E-value=0.06  Score=38.09  Aligned_cols=55  Identities=18%  Similarity=0.369  Sum_probs=39.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |++|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.
T Consensus        21 ~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~   83 (105)
T 1nsw_A           21 LVDFWAAW------CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE----TTSQFG--IMSIPTLILFKGGRP   83 (105)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH----HHHHcC--CccccEEEEEeCCeE
Confidence            55666775      9999988877654    2  36778888877754    445555  678999877  8874

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.28  E-value=0.015  Score=43.80  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|.+.         .+.+..+|++.+.+    +.+.+  +...+|.+++
T Consensus        35 ~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   97 (140)
T 2dj1_A           35 DTVLLEFYAPW------CGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM----LASKF--DVSGYPTIKI   97 (140)
T ss_dssp             SEEEEEECCTT------CHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHH----HHHHC--CCCccCeEEE
Confidence            44688888897      99999987776652         26777778877755    44455  4667999876

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=95.28  E-value=0.031  Score=45.42  Aligned_cols=70  Identities=16%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l  180 (251)
                      +.+|+..      .|++|.+++-+|+..|++|+.+.++..  .....++.+...  ...+|.+.. +|..+.+...+.+.
T Consensus         1 m~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P--~g~vP~L~~~~g~~l~eS~aI~~y   72 (219)
T 3f6d_A            1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNP--QHCIPTLVDEDGFVLWESRAIQIY   72 (219)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCT--TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CEEEeCC------CCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCC--CCccCeEEeCCCCEEEcHHHHHHH
Confidence            3578777      499999999999999999999887643  223456666653  679999999 89888887776654


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        73 L   73 (219)
T 3f6d_A           73 L   73 (219)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=95.28  E-value=0.013  Score=47.45  Aligned_cols=38  Identities=3%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHH----HHHcCCccceeeccCC
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQI----LRTHLVKFDDKDVFMS   65 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~----L~~~~v~~~e~dv~~d   65 (251)
                      +...||.|+.-+      ||+|.++-..    ++++++.|..+.+.-.
T Consensus        22 ~~~~vvef~d~~------Cp~C~~~~~~~~~~~~~~~v~~~~~p~~~~   63 (185)
T 3feu_A           22 GMAPVTEVFALS------CGHCRNMENFLPVISQEAGTDIGKMHITFN   63 (185)
T ss_dssp             CCCSEEEEECTT------CHHHHHHGGGHHHHHHHHTSCCEEEECCSS
T ss_pred             CCCEEEEEECCC------ChhHHHhhHHHHHHHHHhCCeEEEEeccCC
Confidence            456899999987      9999997544    4444678888887543

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.27  E-value=0.028  Score=41.79  Aligned_cols=54  Identities=15%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|+++...|.+          ..+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        26 ~~~lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   89 (133)
T 1x5d_A           26 DVWMVEFYAPW------CGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV----LASRY--GIRGFPTIKI   89 (133)
T ss_dssp             SEEEEEEECTT------CHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH----HHHHH--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------CHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH----HHHhC--CCCeeCeEEE
Confidence            34688888997      9999987766654          246777788887765    33445  4667999975

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=95.26  E-value=0.016  Score=48.38  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=53.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+++|+..      .|++|.+++-+|+..|++|+.+.+..+  ...++.++.  +...+|.+.++|..+.+...+.+..
T Consensus         3 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~n--P~g~vPvL~~~~~~l~eS~aI~~YL   71 (242)
T 3ubk_A            3 MIKLHGAS------ISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKIS--PMGKIPVLEMDGKFIFESGAILEFL   71 (242)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTS--TTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcC--CCCCcCeEEECCceEecHHHHHHHH
Confidence            47888887      499999999999999999999988533  234555554  3679999999998888777666543

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=95.25  E-value=0.018  Score=47.00  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=46.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|+.+.      ||+|.+++-+|+..|++|+.+.++...  ....++.+..  ....+|++..+|..+.
T Consensus         2 ~~~Ly~~~~------sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   65 (218)
T 1r5a_A            2 TTVLYYLPA------SPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELN--PQHCIPTMDDHGLVLW   65 (218)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSSEEEETTEEEE
T ss_pred             eEEEEeCCC------ChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhC--CCCCcCEEEECCEEEE
Confidence            378999996      999999999999999999988886532  2235555553  3467999986665443

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.25  E-value=0.006  Score=45.35  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...|+.|+++|      |++|+++...|++.     ++.|..+|++.+++.    .+.+  +...+|.+++
T Consensus        37 ~~~vv~f~~~~------C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~----~~~~--~v~~~Pt~~~   95 (130)
T 1wmj_A           37 KVVIIDFTASW------CGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEV----AEKY--NVEAMPTFLF   95 (130)
T ss_dssp             CBCBEECCSSS------CSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGG----HHHH--TCCSSCCCCB
T ss_pred             CEEEEEEECCC------ChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHH----HHHc--CCCccceEEE
Confidence            45688888887      99999988777653     577888888877664    3344  4567898876

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=95.23  E-value=0.057  Score=38.59  Aligned_cols=56  Identities=30%  Similarity=0.428  Sum_probs=40.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        26 lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~g~~~   89 (111)
T 3gnj_A           26 LVMFSRKN------CHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT----LFQRFS--LKGVPQILYFKDGEYK   89 (111)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHTT--CCSSCEEEEEETTEEE
T ss_pred             EEEEeCCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh----HHHhcC--CCcCCEEEEEECCEEE
Confidence            56677775      99999888777543      37788889887764    445555  778998755  88644

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=95.20  E-value=0.011  Score=50.53  Aligned_cols=53  Identities=23%  Similarity=0.613  Sum_probs=30.9

Q ss_pred             CccccccCCcc-----eeeCCCCCCCceeeecccccc--cccceeCCCCCccc-----ccccCCC
Q psy15946        199 CTICQVCGGYR-----LLPCSLCNGSKKSVHRNHFTT--ELVALKCMNCDEVG-----LVKCYAC  251 (251)
Q Consensus       199 ~~~C~~Cgg~~-----~~~C~~C~gs~k~~~~~~~~~--~~~~~~C~~Cneng-----l~~C~~C  251 (251)
                      ...|..|.|++     ...|+.|+|+-.++...+...  ......|+.|+-.|     -.+|+.|
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C  102 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSC  102 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSS
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCccc
Confidence            45777777777     366888888865532111110  01245677777777     4457766

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=95.20  E-value=0.021  Score=46.91  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~  179 (251)
                      .+++|+..      .+++|.+++-+|+..|++|+.+.++..  .....++.+..  ....+|.+.+ +|..|.+...+.+
T Consensus         3 ~~~Ly~~~------~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~~g~~l~eS~aI~~   74 (225)
T 3m8n_A            3 LYKLYSMQ------RSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKN--PSGQVPLLETAPGRYLAESNAILW   74 (225)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTC--TTCCSSEEECSTTCEEECHHHHHH
T ss_pred             ceEEecCC------CCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhC--CCCCCCEEEeCCCCEEEcHHHHHH
Confidence            47889888      499999999999999999999888642  12234455554  4679999997 6788887777766


Q ss_pred             HHHc
Q psy15946        180 LNES  183 (251)
Q Consensus       180 l~e~  183 (251)
                      ..+.
T Consensus        75 yL~~   78 (225)
T 3m8n_A           75 YLAV   78 (225)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            5554

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=95.18  E-value=0.036  Score=47.24  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             chheeeeeeecc---cccCCCcchHHHHHHH----HhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCC
Q psy15946        101 AGKIVMYSTTMG---IVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGD  173 (251)
Q Consensus       101 ~~~Vviyt~sl~---~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG  173 (251)
                      +..+++|....+   .....||+|.+++.+|    +..|++|+.+.++... ...++.++.  ....+|.+..+|..|..
T Consensus        20 ~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~n--P~gkVPvL~d~g~~l~E   96 (260)
T 2yv7_A           20 VPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNF--EATHPPILIDNGLAILE   96 (260)
T ss_dssp             CCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CC--TTCCSCEEEETTEEECS
T ss_pred             CccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhC--CCCCCCEEEECCEEEeC
Confidence            456889965422   3445799999999999    8889999988876431 223455544  46789999999999988


Q ss_pred             hHHHHHHHH
Q psy15946        174 ADAIERLNE  182 (251)
Q Consensus       174 ~d~l~~l~e  182 (251)
                      ...+.+..+
T Consensus        97 S~aI~~YL~  105 (260)
T 2yv7_A           97 NEKIERHIM  105 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=95.16  E-value=0.084  Score=37.23  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=39.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        23 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   86 (106)
T 3die_A           23 LVDFWATA------CGPCKMIAPVLEELAADYEGKADILKLDVDENPS----TAAKYE--VMSIPTLIVFKDGQPV   86 (106)
T ss_dssp             EEEEECSB------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSBSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHH----HHHhCC--CcccCEEEEEeCCeEE
Confidence            56677775      99999888777543      26778888887765    444555  678999765  78643

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=95.15  E-value=0.061  Score=41.05  Aligned_cols=55  Identities=13%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|++....|++.      .+.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        55 ~k~vlv~F~a~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~  115 (148)
T 3p2a_A           55 DLPMVIDFWAPW------CGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA----LSTRF--RIRSIPTIML  115 (148)
T ss_dssp             SSCEEEEEECSS------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEECCC------CHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH----HHHHC--CCCccCEEEE
Confidence            345678889997      99999998888762      46777888887776    44455  4677898876

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.15  E-value=0.03  Score=46.15  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhc---CCceeEEEcCC---CHH-----------------------------
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKDVFM---SRE-----------------------------  145 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~---~v~~~e~dv~~---~~~-----------------------------  145 (251)
                      ...|++|+..+      ||+|.++...|+++   +|.+..+....   ++.                             
T Consensus        87 k~~vv~F~d~~------Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~  160 (211)
T 1t3b_A           87 KHVVTVFMDIT------CHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  160 (211)
T ss_dssp             SEEEEEEECTT------CHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CEEEEEEECCC------CHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCCh
Confidence            34577888885      99999877666553   67776665431   110                             


Q ss_pred             --------HHHHHHHHhCCCCCCCceEEE-CCeeeCCh
Q psy15946        146 --------TQQEFKERLGTDVINVPQIFV-EGVHIGDA  174 (251)
Q Consensus       146 --------~~~el~~~~g~~~~~vP~vfi-~g~~iGG~  174 (251)
                              ...++.+.+|  ...+|.+|+ ||+.+.|+
T Consensus       161 ~~~~~~v~~~~~l~~~~g--V~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          161 VKTPNIVKKHYELGIQFG--VRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             CCCSSHHHHHHHHHHHHT--CCSSCEEECTTSCCCCSC
T ss_pred             HHHHHHHHHHHHHHHHcC--CCcCCEEEEeCCEEecCC
Confidence                    1123444555  788999999 89888775

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=95.14  E-value=0.033  Score=51.03  Aligned_cols=73  Identities=22%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC---eeeCChHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG---VHIGDADAI  177 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g---~~iGG~d~l  177 (251)
                      +..+++|+..      .|++|.+++-+|+..|++|+.+.++......+++.++..  ...+|.+.+++   ..+.....+
T Consensus        24 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP--~g~vP~L~~~~~~g~~l~eS~aI   95 (471)
T 4ags_A           24 ARALKLYVSA------TCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINP--RETVPTLEVGNADKRFMFESMLI   95 (471)
T ss_dssp             -CCEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCT--TCCSCEEEECSSSCEEEESHHHH
T ss_pred             CCceEEECCC------CCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCC--CCccCeEEECCcCeEEEecHHHH
Confidence            4468999987      499999999999999999999998764434556777764  67999999987   788777766


Q ss_pred             HHHH
Q psy15946        178 ERLN  181 (251)
Q Consensus       178 ~~l~  181 (251)
                      .+..
T Consensus        96 ~~yL   99 (471)
T 4ags_A           96 AQYL   99 (471)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=95.13  E-value=0.038  Score=45.11  Aligned_cols=70  Identities=14%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH----HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR----ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~----~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +.+|+..      .+++|.+++-+|+..|++|+.+.++...    ....++.+...  ...+|.+..+|..|.....+.+
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P--~g~vP~L~~~g~~l~eS~aI~~   74 (222)
T 3niv_A            3 LILYDYF------RSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINP--QELVPSLDINGQILSQSMAIID   74 (222)
T ss_dssp             -CEEECT------TCHHHHHHHHHHHHTTCCCCEEECCC---------------------CCSEEEETTEEEECHHHHHH
T ss_pred             EEEEcCC------CCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCC--CCCcCEEEECCEEeecHHHHHH
Confidence            5678776      4999999999999999999998886543    23455666653  6799999999999888777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        75 yL   76 (222)
T 3niv_A           75 YL   76 (222)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=95.12  E-value=0.045  Score=40.99  Aligned_cols=56  Identities=16%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        41 vv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~--v~~~Pt~~i~~~G~~~  103 (125)
T 1r26_A           41 VAWFTAVW------CGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCR--VLQLPTFIIARSGKML  103 (125)
T ss_dssp             EEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCc------CHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcC--CCcccEEEEEeCCeEE
Confidence            55667775      99999887777652     58888999987754    444555  778999877  88753

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.11  E-value=0.035  Score=40.08  Aligned_cols=56  Identities=14%  Similarity=0.258  Sum_probs=38.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh---------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT---------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~---------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|.++...|.+         ..+.+..+|.+.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        28 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   94 (120)
T 1mek_A           28 LVEFYAPW------CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD----LAQQYG--VRGYPTIKFFRNGDTA   94 (120)
T ss_dssp             EEEEECSS------CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS----SHHHHT--CCSSSEEEEEESSCSS
T ss_pred             EEEEECCC------CHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHH----HHHHCC--CCcccEEEEEeCCCcC
Confidence            56677775      9999987776654         246778888876653    344454  678999876  77543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=95.11  E-value=0.08  Score=37.68  Aligned_cols=56  Identities=14%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc---------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~---------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|.+.         ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        25 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~g~~~   91 (111)
T 3uvt_A           25 FIKFYAPW------CGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN----ICSKYS--VRGYPTLLLFRGGKKV   91 (111)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------ChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh----HHHhcC--CCcccEEEEEeCCcEE
Confidence            56677775      99999888777543         45667778876654    445555  678998765  77543

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=95.09  E-value=0.014  Score=47.24  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +++|+.++      ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+|..+.
T Consensus         2 ~~Ly~~~~------s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   64 (209)
T 3ein_A            2 VDFYYLPG------SSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKIN--PQHTIPTLVDNGFALW   64 (209)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEETTEEEE
T ss_pred             eEEecCCC------CccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcC--CCCCCCEEEECCEEEE
Confidence            57899996      999999999999999999988776432  2244565554  4567999987665543

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=95.05  E-value=0.076  Score=38.87  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        35 lv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   97 (116)
T 3qfa_C           35 VVDFSATW------CGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASECE--VKSMPTFQFFKKGQKV   97 (116)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHH----HHHHTT--CCSSSEEEEESSSSEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcC--CccccEEEEEeCCeEE
Confidence            45577776      99999988888663     46677888877654    445555  778999766  67543

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=95.05  E-value=0.045  Score=43.88  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             chHHHHHHHHhcCCceeEEE-cCCCHHHHHHHHH------HhCCCCCCCceEEECCeee
Q psy15946        120 RCLKVKQILRTHLVKFDDKD-VFMSRETQQEFKE------RLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       120 ~C~~~k~lL~~~~v~~~e~d-v~~~~~~~~el~~------~~g~~~~~vP~vfi~g~~i  171 (251)
                      .-..+..++.+.|++-.... ...+.+..+.+.+      ..|  ...+|.++|||+++
T Consensus       107 ~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtPt~~vng~~~  163 (192)
T 3h93_A          107 TPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQ--VTGVPTMVVNGKYR  163 (192)
T ss_dssp             SHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHT--CCSSSEEEETTTEE
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhC--CCCCCeEEECCEEE
Confidence            34577788888888643322 1233444433332      234  78899999999975

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.04  E-value=0.045  Score=40.54  Aligned_cols=55  Identities=13%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|+++|      |++|+++...|++.      .+.+..+|++.+.+    +.+.+  +...+|.+++
T Consensus        35 ~~~~lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~   95 (130)
T 2dml_A           35 DGLWLVEFYAPW------CGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS----LGGQY--GVQGFPTIKI   95 (130)
T ss_dssp             SSCEEEEEECTT------CSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHH--TCCSSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHc--CCCccCEEEE
Confidence            345788899998      99999988777652      26677788887765    34445  4677999975

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=95.04  E-value=0.042  Score=44.74  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +++|+..      .+++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~yL   74 (218)
T 1r5a_A            3 TVLYYLP------ASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELN--PQHCIPTMDDHGLVLWESRVILSYL   74 (218)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             EEEEeCC------CChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhC--CCCCcCEEEECCEEEEcHHHHHHHH
Confidence            6788877      4999999999999999999999886532  2335555554  3678999999999888877766643

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=95.00  E-value=0.035  Score=45.42  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCC--ceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLV--KFDDKDVFMS--RETQQEFKERLGTDVINVPQIF-VEGVHIGDADA  176 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v--~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~  176 (251)
                      .++++|+..      .+++|.+++-+|+..|+  +|+.++++..  .....++.+...  ...+|.+. .+|..|.+...
T Consensus        17 ~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP--~g~vP~L~~~~g~~l~eS~a   88 (233)
T 3ibh_A           17 QKMIIYDTP------AGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNY--SGTVPVLELDDGTLIAECTA   88 (233)
T ss_dssp             --CEEEECT------TCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCT--TCCSCEEECTTCCEEESHHH
T ss_pred             cceEEecCC------CCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCC--CCccceEEecCCeEEecHHH
Confidence            568999988      49999999999999999  9998887643  233456666653  67999998 68888887776


Q ss_pred             HHHHH
Q psy15946        177 IERLN  181 (251)
Q Consensus       177 l~~l~  181 (251)
                      +.+..
T Consensus        89 I~~yL   93 (233)
T 3ibh_A           89 ITEYI   93 (233)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=94.99  E-value=0.044  Score=40.73  Aligned_cols=54  Identities=17%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             CCeEEEEeec-------CCCCCCCCchHHHHHHHHHHc------CCccceeecc-------CCHHHHHHHHHHhCCCCCC
Q psy15946         23 AGKIVMYSTT-------MGIVRDTYHRCLKVKQILRTH------LVKFDDKDVF-------MSRETQQEFKERLGTDVIN   82 (251)
Q Consensus        23 ~~~vvvyt~~-------~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~-------~d~~~~~el~~~~g~g~~~   82 (251)
                      ..-|+.|+++       |      |++|+++...|++.      ++.|..+|++       .+.+    +.+.+  +...
T Consensus        25 ~~v~v~F~a~~~~~~~~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~----~~~~~--~i~~   92 (123)
T 1wou_A           25 KTIFAYFTGSKDAGGKSW------CPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND----FRKNL--KVTA   92 (123)
T ss_dssp             SEEEEEEECCBCTTCCBS------CHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH----HHHHH--CCCS
T ss_pred             CEEEEEEEccCCCCCCCc------CHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH----HHHHC--CCCe
Confidence            4467888888       8      99999999888862      4677778883       4443    43445  5677


Q ss_pred             CCceee
Q psy15946         83 VPQIFV   88 (251)
Q Consensus        83 vP~i~i   88 (251)
                      +|.+++
T Consensus        93 ~Pt~~~   98 (123)
T 1wou_A           93 VPTLLK   98 (123)
T ss_dssp             SSEEEE
T ss_pred             eCEEEE
Confidence            999975

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=94.99  E-value=0.021  Score=46.70  Aligned_cols=61  Identities=13%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH----HHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR----ETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~----~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++||+.+.      ||+|.+++-+|+.+|++|+.+.++...    ....++.++.  ....+|++..+|..+.
T Consensus         3 ~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   67 (222)
T 3niv_A            3 LILYDYFR------STACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQIN--PQELVPSLDINGQILS   67 (222)
T ss_dssp             -CEEECTT------CHHHHHHHHHHHHTTCCCCEEECCC---------------------CCSEEEETTEEEE
T ss_pred             EEEEcCCC------CcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcC--CCCCcCEEEECCEEee
Confidence            68998885      999999999999999999988876543    2344556554  4567999987665543

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=94.98  E-value=0.052  Score=38.37  Aligned_cols=56  Identities=16%  Similarity=0.238  Sum_probs=39.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++      .++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        24 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~   87 (106)
T 1xwb_A           24 VLDFFATW------CGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYN--ISSMPTFVFLKNGVKV   87 (106)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCc------CHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH----HHHHcC--CCcccEEEEEcCCcEE
Confidence            45566665      9999988777655      356778888877654    444555  678999766  78643

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=94.97  E-value=0.025  Score=48.68  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC--C--eeeCChHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE--G--VHIGDADA  176 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~--g--~~iGG~d~  176 (251)
                      ...+++|+..      .|++|.+++.+|+..|++|+.++++...  ..++ +..  +..++|.|.++  |  ..+.....
T Consensus        12 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~--p~~~vP~l~~~~~g~~~~l~eS~a   80 (290)
T 1z9h_A           12 RLQLTLYQYK------TCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFS--SYRKVPILVAQEGESSQQLNDSSV   80 (290)
T ss_dssp             -CEEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTC--SCCSSCEEEEEETTEEEEECSHHH
T ss_pred             CCCEEEEeCC------CChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHc--CCCCCCEEEECCCCCeEEecCHHH
Confidence            3458899887      4999999999999999999999986321  1223 233  47899999985  3  67888777


Q ss_pred             HHHHHH
Q psy15946        177 IERLNE  182 (251)
Q Consensus       177 l~~l~e  182 (251)
                      +.+..+
T Consensus        81 I~~yL~   86 (290)
T 1z9h_A           81 IISALK   86 (290)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766443

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=94.97  E-value=0.021  Score=47.82  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      |..++||..+       ||+|.+++-+|+.+|++|+.+.|+...  ....++.++.  ....+|++..++
T Consensus         1 M~m~~Ly~~~-------sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vPvL~~~d   61 (244)
T 4ecj_A            1 MVMIDLYTAA-------TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRIN--PNGRIPAIVDRD   61 (244)
T ss_dssp             -CCEEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEEGG
T ss_pred             CcEEEEecCC-------CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcC--CCCCCCEEEECC
Confidence            4568999876       999999999999999999988776432  2234565554  456799998863

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=94.94  E-value=0.043  Score=44.94  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++.. +...++.+....+...+|.+..+|..|.....+.+..
T Consensus         2 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~-~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   74 (221)
T 1b48_A            2 AKPKLYYFN------GRGRMESIRWLLAAAGVEFEEEFLETR-EQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYL   74 (221)
T ss_dssp             CCCEEEBCS------SCTTTHHHHHHHHHHTCCCCCCBCCCH-HHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHH
T ss_pred             CceEEEEeC------CCcchHHHHHHHHHcCCCceEEEeCch-HhHHHHHhcCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            357788876      499999999999999999999888642 2233344330013678999999999998877766643

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=94.94  E-value=0.057  Score=39.49  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        38 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~  100 (122)
T 2vlu_A           38 VIDFTASW------CGPCRIMAPVFADLAKKFPNAVFLKVDVDELKP----IAEQFS--VEAMPTFLFMKEGDVK  100 (122)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHH----HHHHcC--CCcccEEEEEeCCEEE
Confidence            56677776      99999888777652     47788888887754    444555  678999766  78743

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=94.93  E-value=0.048  Score=38.99  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=35.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|++.     ++.+..+|++.+++.    .+..+  ...+|.+++  +|+.+
T Consensus        22 lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~--v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A           22 LLFIKTEN------CGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEI----AGRYA--VFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             EEEEEESS------CHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------------CCCCEEEEEETTEEE
T ss_pred             EEEEeCCC------CcchHHHHHHHHHHHHHcCCceEEEEECCCCHHH----HHhcC--CCCCCEEEEEeCCeEE
Confidence            45577776      99999888777653     567788888877644    33444  678998644  78765

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=94.93  E-value=0.042  Score=45.31  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~  179 (251)
                      .+.+|+...      +++|.+++-+|+..|++|+.+.++..  .....++.+...  ...+|.+. .+|..|.+...+.+
T Consensus        22 m~~Ly~~~~------sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P--~g~vPvL~~~~g~~l~eS~aI~~   93 (230)
T 4hz2_A           22 SMRIYGMNG------SGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNA--IGKVPVVVLDDGTALRESNAILL   93 (230)
T ss_dssp             CCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCT--TCCSCEEECTTSCEEECHHHHHH
T ss_pred             hheeeCCCC------CccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCC--CCCCCEEEecCCEEeeCHHHHHH
Confidence            478898884      99999999999999999999888643  233456666653  67999999 78888888777776


Q ss_pred             HHHc
Q psy15946        180 LNES  183 (251)
Q Consensus       180 l~e~  183 (251)
                      ..+.
T Consensus        94 yL~~   97 (230)
T 4hz2_A           94 HFAE   97 (230)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            5544

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=94.92  E-value=0.077  Score=40.04  Aligned_cols=56  Identities=25%  Similarity=0.357  Sum_probs=40.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      -|+.|+++|      |++|..+...|++    +  .+.|..+|++.+.+    +.+..+  ...+|.+++  +|+.
T Consensus        53 vvv~f~~~~------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~  116 (140)
T 1v98_A           53 TLVDFFAPW------CGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG----LAARYG--VRSVPTLVLFRRGAP  116 (140)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHCC--CCccCEEEEEeCCcE
Confidence            456677775      9999988877754    2  47788888887754    444555  678999877  8874

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=94.92  E-value=0.03  Score=45.20  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .+++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+..+|..+.+...+.+..
T Consensus         2 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   73 (209)
T 3ein_A            2 VDFYYLP------GSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKIN--PQHTIPTLVDNGFALWESRAIQVYL   73 (209)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEecCC------CCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4678777      4999999999999999999998876432  2344555554  3679999999999988877766643

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=94.91  E-value=0.087  Score=37.76  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |+.|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.
T Consensus        27 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~   89 (112)
T 1t00_A           27 LVDFWAAW------CGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG----TAAKYG--VMSIPTLNVYQGGEV   89 (112)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------CHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH----HHHhCC--CCcccEEEEEeCCEE
Confidence            56677775      9999988776654    2  46778888887754    444555  678999766  7764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=94.88  E-value=0.078  Score=38.69  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH----HhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|..+|      |++|.++...|    +.++..+..+|+....  +...++.+..+  ...+|.+++  +|+.
T Consensus        33 ~v~f~a~w------C~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--i~~~Pt~~~~~~G~~   99 (118)
T 1zma_A           33 TFFIGRKT------CPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG--IPTVPGFVHITDGQI   99 (118)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT--CCSSCEEEEEETTEE
T ss_pred             EEEEECCC------CccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcC--CCCCCeEEEEECCEE
Confidence            56667776      99999876555    4456677778876543  44456767776  788999754  6754

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=94.88  E-value=0.038  Score=45.06  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCC---CCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGT---DVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~---g~~~vP~i~i~g~~~g   94 (251)
                      ++++|..+.      +++|.+++-+|+.+|++|+.+.++..+    ++.++...   ....+|++..+|..+.
T Consensus         4 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~~~----~~~~~~p~~~~p~g~vP~L~~~g~~l~   66 (222)
T 3ik7_A            4 RPKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKE----QLYKLQDGNHLLFQQVPMVEIDGMKLV   66 (222)
T ss_dssp             SCEEEECSS------CTTTHHHHHHHHHTTCCCEEEECCSHH----HHHHHHHTTCSTTSCSCEEEETTEEEE
T ss_pred             CcEEEEeCC------CcchHHHHHHHHHcCCCeeEEeeCcHH----HHHHhhhcCCCCCCCCCEEEECCEEee
Confidence            689999996      999999999999999999999987533    34333311   1356999988776543

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=94.87  E-value=0.048  Score=45.14  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             CCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh---------CCCCCCCceEEE--CCeeeCChHHHHHHH
Q psy15946        117 TYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL---------GTDVINVPQIFV--EGVHIGDADAIERLN  181 (251)
Q Consensus       117 tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~---------g~~~~~vP~vfi--~g~~iGG~d~l~~l~  181 (251)
                      .+|+|.+++-+|..+||+|+.+.|+... ....+....         +....+||.|..  +|..|.....+.+..
T Consensus        21 ~SP~~~kvr~~L~~kgi~y~~~~v~~~~-~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~g~~l~ES~aI~~YL   95 (253)
T 4f03_A           21 WSPNTWKIRYALNYKGLKYKTEWVEYPD-IAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYL   95 (253)
T ss_dssp             CCHHHHHHHHHHHHHTCCEEEEECCGGG-HHHHHHHHTCCCSEECTTCCEECCSCEEEETTTTEEEESHHHHHHHH
T ss_pred             cChhHHHHHHHHHHcCCCCEEEEEcccc-chhhhhhcCCCCchhhHhhCCCCccCeEEeCCCCEEEecHHHHHHHH
Confidence            4899999999999999999999886431 112222221         123457999987  568887766665543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=94.87  E-value=0.14  Score=37.69  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=39.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE---CCee
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV---EGVH  170 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi---~g~~  170 (251)
                      -++.|+++|      |++|..+...|++      .++.+..+|++.+.  ..++.+..+  ...+|.+++   +|+.
T Consensus        29 ~lv~f~a~w------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~--~~~~~~~~~--v~~~Pt~~~~~~~G~~   95 (126)
T 2l57_A           29 TIIMFKTDT------CPYCVEMQKELSYVSKEREGKFNIYYARLEEEK--NIDLAYKYD--ANIVPTTVFLDKEGNK   95 (126)
T ss_dssp             EEEEEECSS------CHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH--HHHHHHHTT--CCSSSEEEEECTTCCE
T ss_pred             EEEEEECCC------CccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--hHHHHHHcC--CcceeEEEEECCCCCE
Confidence            356677776      9999988877755      35667777732332  235566665  778999877   7874

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=94.86  E-value=0.13  Score=37.48  Aligned_cols=51  Identities=12%  Similarity=0.165  Sum_probs=37.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|+++|      |+.|..+...|++.      ++.+..+|++.+++    +.+..+  ...+|.+++
T Consensus        25 lv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~   81 (122)
T 3aps_A           25 VVDFYAPW------CGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKAG--IKAYPSVKL   81 (122)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH----HHHHcC--CCccceEEE
Confidence            56677775      99999888777552      57888889887754    444555  678999754

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=94.85  E-value=0.045  Score=40.87  Aligned_cols=55  Identities=15%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHH--H------cCCccceeec---cCCHHHHHHHHHHhCCCC---CCCCcee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILR--T------HLVKFDDKDV---FMSRETQQEFKERLGTDV---INVPQIF   87 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~--~------~~v~~~e~dv---~~d~~~~~el~~~~g~g~---~~vP~i~   87 (251)
                      ...-|+.|+++|      |++|++....|.  +      .++.+..+|+   +.+.+    +.+.+  +.   ..+|.++
T Consensus        29 ~k~vlv~f~a~w------C~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~----l~~~~--~v~~~~~~Pt~~   96 (133)
T 3fk8_A           29 HKPTLLVFGANW------CTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLE----LSQAY--GDPIQDGIPAVV   96 (133)
T ss_dssp             TCCEEEEEECTT------CHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHH----HHHHT--TCGGGGCSSEEE
T ss_pred             CCcEEEEEcCCC------CHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHH----HHHHh--CCccCCccceEE
Confidence            445688899998      999999998888  3      2567777888   44444    44555  45   7799987


Q ss_pred             e
Q psy15946         88 V   88 (251)
Q Consensus        88 i   88 (251)
                      +
T Consensus        97 ~   97 (133)
T 3fk8_A           97 V   97 (133)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=94.84  E-value=0.12  Score=37.97  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=35.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ...|+.|..+|      |++|......|.+.     ++.+..++++.+.+..+++.+..
T Consensus        26 k~~ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   78 (136)
T 1zzo_A           26 KPAVLWFWAPW------CPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKY   78 (136)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHT
T ss_pred             CeEEEEEEcCC------ChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHc
Confidence            45677888887      99999987777764     57778888877776666665554

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=94.81  E-value=0.051  Score=44.49  Aligned_cols=65  Identities=12%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH---HHHH-HHHH--hCCCCCCCCceeeecccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQE-FKER--LGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~---~~~e-l~~~--~g~g~~~vP~i~i~g~~~   93 (251)
                      ..++++|..+.      +++|.+++-+|+.+|++|+.+.|+....   ...+ +...  .++....+|++..+|..+
T Consensus         3 ~~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l   73 (224)
T 3gtu_B            3 ESSMVLGYWDI------RGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKI   73 (224)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEE
T ss_pred             CCCcEEEEeCC------CcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEe
Confidence            45788999885      9999999999999999999988864210   0122 2222  122345699996555443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.79  E-value=0.16  Score=37.33  Aligned_cols=68  Identities=13%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh-------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe---e
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV---H  170 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~-------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~---~  170 (251)
                      -++.|.++|      |+.|.++...|++       .++.+..+|++.+.+    +.+..+  ...+|.+++  +|+   +
T Consensus        25 vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~~~   92 (126)
T 1x5e_A           25 WMIEFYAPW------CPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG----LSGRFI--INALPTIYHCKDGEFRRY   92 (126)
T ss_dssp             EEEEEECSS------CHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEEEC
T ss_pred             EEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH----HHHHcC--CcccCEEEEEeCCeEEEe
Confidence            356677775      9999988877654       268888889887754    445555  678999765  776   3


Q ss_pred             eCC--hHHHHHHHH
Q psy15946        171 IGD--ADAIERLNE  182 (251)
Q Consensus       171 iGG--~d~l~~l~e  182 (251)
                      .|.  .+++.++.+
T Consensus        93 ~G~~~~~~l~~~l~  106 (126)
T 1x5e_A           93 QGPRTKKDFINFIS  106 (126)
T ss_dssp             CSCCCHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHH
Confidence            343  345555543

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=94.78  E-value=0.011  Score=48.99  Aligned_cols=62  Identities=8%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             eEEEEeecCCCCCCCC-----chHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTY-----HRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C-----~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+.      |     ++|.+++-+|+.+|++|+.+.++.......++.++.  ....+|++..+|..+.
T Consensus        18 ~~~Ly~~~~------s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   84 (230)
T 2ycd_A           18 TITVFERSP------DGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQ--PFGQIPSYEQGDLILF   84 (230)
T ss_dssp             EEEEESSCT------TTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTC--TTSCSCEEEETTEEEE
T ss_pred             eEEEecCCC------ccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcC--CCCCCCEEEECCEEEE
Confidence            699999995      8     999999999999999999988864211122344433  3567999986665443

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=94.77  E-value=0.058  Score=38.38  Aligned_cols=55  Identities=13%  Similarity=0.261  Sum_probs=39.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |++|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.
T Consensus        24 ~v~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~   86 (108)
T 2trx_A           24 LVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG--IRGIPTLLLFKNGEV   86 (108)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHcC--CcccCEEEEEeCCEE
Confidence            55667775      9999988877654    2  36677888877654    444555  678999877  8875

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=94.75  E-value=0.11  Score=38.20  Aligned_cols=56  Identities=18%  Similarity=0.338  Sum_probs=39.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|++.       ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        37 vv~f~a~~------C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~----~~~~~~--v~~~Pt~~~~~~G~~~  101 (121)
T 2j23_A           37 VIDFWATW------CGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ----IAQEVG--IRAMPTFVFFKNGQKI  101 (121)
T ss_dssp             EEEEECTT------CSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHH----HHHHHT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHH----HHHHcC--CCcccEEEEEECCeEE
Confidence            45566665      99999988877642       27778888887754    444454  678999766  78653

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=94.74  E-value=0.099  Score=37.95  Aligned_cols=56  Identities=20%  Similarity=0.349  Sum_probs=40.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++    +  ++.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        34 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--i~~~Pt~~~~~~g~~~   97 (121)
T 2i1u_A           34 LVDFWATW------CGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE----TARNFQ--VVSIPTLILFKDGQPV   97 (121)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhcC--CCcCCEEEEEECCEEE
Confidence            56666665      9999988877754    2  47788888887754    444555  678999876  78653

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=94.73  E-value=0.043  Score=45.53  Aligned_cols=58  Identities=10%  Similarity=0.028  Sum_probs=43.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeee-cccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVE-GVHI   93 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~-g~~~   93 (251)
                      ++|+.+       |++|.+++-+|+.+|++|+.+.|+..  .....++.++.  ....+|++..+ |..+
T Consensus         5 lLy~~~-------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~--P~g~vPvL~~~dg~~l   65 (238)
T 4exj_A            5 ILYTGP-------TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLN--PAGIVPTLVDDKGTPI   65 (238)
T ss_dssp             EEEECS-------STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHC--TTCCSCEEECTTSCEE
T ss_pred             eEeeCC-------CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhC--CCCCCCEEEeCCCcEE
Confidence            399988       99999999999999999998877653  33345666665  45679999874 4443

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=94.71  E-value=0.046  Score=45.14  Aligned_cols=73  Identities=11%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhc---CCceeEEEcCC---CH------------------------------
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---LVKFDDKDVFM---SR------------------------------  144 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~---~v~~~e~dv~~---~~------------------------------  144 (251)
                      ...|++|+..+      |++|.+....|+++   +|.+..+.+..   ++                              
T Consensus        87 k~~vv~F~d~~------Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~  160 (216)
T 1eej_A           87 KHVITVFTDIT------CGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  160 (216)
T ss_dssp             CEEEEEEECTT------CHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCCh
Confidence            34577888885      99999877666544   67776665421   11                              


Q ss_pred             -------HHHHHHHHHhCCCCCCCceEEE-CCeeeCCh---HHHHHHH
Q psy15946        145 -------ETQQEFKERLGTDVINVPQIFV-EGVHIGDA---DAIERLN  181 (251)
Q Consensus       145 -------~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~---d~l~~l~  181 (251)
                             +...++.+.+|  ...+|.+|+ ||+.+.|+   +++.++.
T Consensus       161 ~~~~~~v~~~~~l~~~~g--V~gtPt~v~~dG~~~~G~~~~~~l~~~l  206 (216)
T 1eej_A          161 ASCDVDIADHYALGVQLG--VSGTPAVVLSNGTLVPGYQPPKEMKEFL  206 (216)
T ss_dssp             CCCSCCHHHHHHHHHHHT--CCSSSEEECTTSCEEESCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcC--CCccCEEEEcCCeEecCCCCHHHHHHHH
Confidence                   12233445555  788999998 78777664   4555543

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=94.68  E-value=0.031  Score=45.35  Aligned_cols=38  Identities=11%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSR   66 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~   66 (251)
                      ...|+.|+..|      ||+|.++...|.+.      .+.|..+++....
T Consensus        25 ~v~vv~f~d~~------Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~   68 (193)
T 3hz8_A           25 KVEVLEFFGYF------CPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQK   68 (193)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHTTCCTTEEEEEEECCCSG
T ss_pred             CcEEEEEECCC------ChhHHHHHHHHHHHHHHCCCCeEEEEecCCCCc
Confidence            44799999997      99999988887763      2455666665443

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=94.67  E-value=0.018  Score=47.52  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLNE  182 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~e  182 (251)
                      ..+|.+.      ++|+|.+++-+|...|++|+.+.|+.... .+++.++.  +...||.+.+ ||..|.....+.+..+
T Consensus        23 MKLy~~~------~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~n--P~gkVPvL~~~dG~~l~ES~aI~~YL~   93 (225)
T 4glt_A           23 MKLLYSN------TSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHN--PLGKIPVLILPDGESLYDSRVIVEYLD   93 (225)
T ss_dssp             CEEEECS------SCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTC--TTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             ceEecCC------CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhC--CCCCCCEEEeCCCCEEeehHHHHHHHH
Confidence            4688887      59999999999999999999988864321 12344443  3668999987 5788888777766543

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=94.65  E-value=0.0075  Score=48.42  Aligned_cols=60  Identities=12%  Similarity=0.042  Sum_probs=43.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCcee-eeccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~-i~g~~~g   94 (251)
                      +++|+.++      ||+|.+++-+|+.+|++|+.+.++.. ....++.++.  ....+|++. .+|..+.
T Consensus         1 m~Ly~~~~------sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~~g~~l~   61 (202)
T 3r2q_A            1 MKLVGSYT------SPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFN--PLGKVPVLVTEEGECWF   61 (202)
T ss_dssp             CEEEECSS------CHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTC--TTCCSCEEECTTSCEEC
T ss_pred             CEEEeCCC------CcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhC--CCCCcCeEEecCCcEEe
Confidence            47899996      99999999999999999998888643 1112334333  346799998 5665543

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=94.64  E-value=0.054  Score=43.71  Aligned_cols=70  Identities=24%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC-----eeeCChHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG-----VHIGDADA  176 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g-----~~iGG~d~  176 (251)
                      ..+++|+..      .+++|.+++-+|+..||+|+.+.++..  ...++.+..  +...+|.+..+|     ..|.+...
T Consensus         4 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~--P~g~vP~L~~~~~~g~~~~l~eS~a   73 (211)
T 2wb9_A            4 QHFKLWYFQ------FRGRAEPIRLLLTCAGVKFEDYQFTMD--QWPTIKPTL--PGGRVPLLDVTGPDGKLRRYQESMA   73 (211)
T ss_dssp             CEEEEEEES------SCGGGHHHHHHHHHTTCCCEEEEECTT--THHHHGGGS--GGGCSCEEEEECTTSCEEEEESHHH
T ss_pred             CceEEEEeC------CCCchHHHHHHHHHcCCCceEEEechh--hHHHhCcCC--CCCCCCEEEECCCCccceeecCHHH
Confidence            357888877      489999999999999999999988743  234555543  356899999888     88887776


Q ss_pred             HHHHH
Q psy15946        177 IERLN  181 (251)
Q Consensus       177 l~~l~  181 (251)
                      +.+..
T Consensus        74 I~~yL   78 (211)
T 2wb9_A           74 IARLL   78 (211)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=94.64  E-value=0.039  Score=45.67  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             eEEEE---------eecCCCCCCCCchHHHHHHHHHHcCCccceeeccC
Q psy15946         25 KIVMY---------STTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM   64 (251)
Q Consensus        25 ~vvvy---------t~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~   64 (251)
                      .|++|         +.+|      ||+|.+|+-+|+.+||+|+.+.|+.
T Consensus         4 pi~lYd~~~~~~~~~~~~------SP~~~kvr~~L~~kgi~y~~~~v~~   46 (253)
T 4f03_A            4 PIVFYDIPSNERIKHSPW------SPNTWKIRYALNYKGLKYKTEWVEY   46 (253)
T ss_dssp             CEEEEECCCCGGGTTCCC------CHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CeEEeecCCCCCCCCCCc------ChhHHHHHHHHHHcCCCCEEEEEcc
Confidence            47888         4565      9999999999999999999887764

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=94.62  E-value=0.021  Score=46.22  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+.      +++|.+++-+|+.+|++|+.+.++....  .+++++.  ....+|++..+|..+.
T Consensus         2 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~--~~~~~~n--P~g~vP~L~~~g~~l~   61 (208)
T 1tu7_A            2 SYKLTYFSI------RGLAEPIRLFLVDQDIKFIDDRIAKDDF--SSIKSQF--QFGQLPCLYDGDQQIV   61 (208)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGGGS--TTTGGGS--TTSCSCEEEETTEEEE
T ss_pred             CcEEEEcCC------CcchHHHHHHHHHcCCCceEEEEcHHHH--HHhccCC--CCCCCCEEEECCEEEE
Confidence            578999996      9999999999999999999888764321  2344443  3457999987665543

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=94.61  E-value=0.11  Score=42.43  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=52.0

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH----HHHHHHHH--hCCCCCCCceEEECCeeeCChH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE----TQQEFKER--LGTDVINVPQIFVEGVHIGDAD  175 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~----~~~el~~~--~g~~~~~vP~vfi~g~~iGG~d  175 (251)
                      .++++|....      ++.|.+++-+|+..|++|+.+.++....    ..+.+...  .+.....+|.+..+|..+.+..
T Consensus         4 ~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~   77 (224)
T 3gtu_B            4 SSMVLGYWDI------RGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSN   77 (224)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESHH
T ss_pred             CCcEEEEeCC------CcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecHH
Confidence            3567888773      8999999999999999999988864310    11223333  1224568999988888888777


Q ss_pred             HHHHHH
Q psy15946        176 AIERLN  181 (251)
Q Consensus       176 ~l~~l~  181 (251)
                      .+.+..
T Consensus        78 aI~~yL   83 (224)
T 3gtu_B           78 AILRYI   83 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666643

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=94.60  E-value=0.093  Score=42.70  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC---CCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG---TDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g---~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ++++|+...      +++|.+++-+|+..|++|+.+.++..+    ++.++..   .....+|.+..+|..+.+...+.+
T Consensus         4 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~ye~~~v~~~~----~~~~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~   73 (222)
T 3ik7_A            4 RPKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKE----QLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILH   73 (222)
T ss_dssp             SCEEEECSS------CTTTHHHHHHHHHTTCCCEEEECCSHH----HHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHH
T ss_pred             CcEEEEeCC------CcchHHHHHHHHHcCCCeeEEeeCcHH----HHHHhhhcCCCCCCCCCEEEECCEEeehHHHHHH
Confidence            578888884      899999999999999999999987533    3333321   123689999999999888777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        74 yL   75 (222)
T 3ik7_A           74 YI   75 (222)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.58  E-value=0.061  Score=43.94  Aligned_cols=52  Identities=17%  Similarity=0.334  Sum_probs=39.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc----------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~----------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++.|+++|      |++|+++...|++.          ++.+..+|++.+++    +.+.+  +...+|.+++-
T Consensus       138 ~v~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~~  199 (226)
T 1a8l_A          138 ILVFVTPT------CPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQY--NVMAVPKIVIQ  199 (226)
T ss_dssp             EEEEECSS------CTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHT--TCCSSCEEEEE
T ss_pred             EEEEeCCC------CCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH----HHHhC--CCcccCeEEEE
Confidence            88899998      99999998887762          57777888887665    44445  46779998773

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=94.57  E-value=0.9  Score=44.31  Aligned_cols=118  Identities=13%  Similarity=0.121  Sum_probs=73.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--ecc-----
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV-----   91 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~-----   91 (251)
                      -++.|.++|      |++|+++...+++.      .+.|..+|...+..    +.+.+  +....|.+.+  .|.     
T Consensus       566 ~lv~F~ap~------C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pti~~~~~~~~~~~~  633 (780)
T 3apo_A          566 WMVDFYSPW------SHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS----FCTQE--NVQRYPEIRFYPQKSSKAYQ  633 (780)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTHH----HHHHT--TCCSSSEEEEECCCSSSCCS
T ss_pred             EEEEEECCC------CHHHHHhhHHHHHHHHHhhCCeEEEEEECcchHH----HHHHc--CCCCCCeEEEEcCCCcCccc
Confidence            489999998      99999988777753      35666677665544    33444  3555787754  221     


Q ss_pred             cc--ccc--c-------------------------c--ccch--heeeeeeecccccCCCcchHHHHHHHHh----c--C
Q psy15946         92 HI--GTW--Q-------------------------E--KEAG--KIVMYSTTMGIVRDTYHRCLKVKQILRT----H--L  132 (251)
Q Consensus        92 ~~--gG~--~-------------------------~--~~~~--~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~  132 (251)
                      ++  .|.  +                         .  ...+  -++.|.++|      |+.|..+...|++    +  +
T Consensus       634 ~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~w------C~~C~~~~p~~~~la~~~~~~  707 (780)
T 3apo_A          634 YHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPW------SGPSQNFAPEFELLARMIKGK  707 (780)
T ss_dssp             CEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTTTCSSCEEEEEECTT------CHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHhcCCCeEEEEEECCC------CHHHHHHHHHHHHHHHHhcCC
Confidence            11  220  0                         0  0111  245566776      9999987766543    2  4


Q ss_pred             CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        133 VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       133 v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      +.+..+|++.+++    +.+..+  ...+|.+++
T Consensus       708 ~~~~~vd~~~~~~----~~~~~~--v~~~Pt~~~  735 (780)
T 3apo_A          708 VRAGKVDCQAYPQ----TCQKAG--IKAYPSVKL  735 (780)
T ss_dssp             CEEEEEETTTCHH----HHHHTT--CCSSSEEEE
T ss_pred             ceEEEEECCCCHH----HHHhcC--CCcCCEEEE
Confidence            6777888877654    445555  678999755

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=94.57  E-value=0.066  Score=43.67  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .+++|.+++-+|+..|++|+.+.|+.  .+....++.++.  +...+|.+..+|..|-....+.+..
T Consensus         3 mkLY~~~------~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 3vk9_A            3 IDLYYVP------GSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLN--PQHTVPTLVDDGLSIWESRAIITYL   74 (216)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             EEEEeCC------CChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhC--CCCccceEecCCceeechHHHHHHH
Confidence            5688887      48999999999999999999887753  333456677665  4679999999999998877776643

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=94.57  E-value=0.15  Score=44.05  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=58.1

Q ss_pred             ccchheeeeeeecc---cccCCCcchHHHHHHH----HhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946         99 KEAGKIVMYSTTMG---IVRDTYHRCLKVKQIL----RTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV  169 (251)
Q Consensus        99 ~~~~~Vviyt~sl~---~ir~tc~~C~~~k~lL----~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~  169 (251)
                      ..+..+.+|....+   .....||+|.+++.+|    +..||+|+.+.++....  . +.++..  ...||.+..  +|.
T Consensus        15 ~~~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~nP--~GkVPvL~d~~~g~   89 (291)
T 2yv9_A           15 QSKPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNFL--GAQPPIMIEEEKEL   89 (291)
T ss_dssp             GGSCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHHT--TCCSCEEEEGGGTE
T ss_pred             CCCCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcCC--CCCCCEEEEcCCCe
Confidence            44566899976632   1223699999999998    77899999988865422  2 666653  679999998  899


Q ss_pred             eeCChHHHHHHHHc
Q psy15946        170 HIGDADAIERLNES  183 (251)
Q Consensus       170 ~iGG~d~l~~l~e~  183 (251)
                      .|.....+.+..++
T Consensus        90 ~l~ES~aI~~YL~~  103 (291)
T 2yv9_A           90 TYTDNREIEGRIFH  103 (291)
T ss_dssp             EECSHHHHHHHHHH
T ss_pred             EEeCHHHHHHHHHH
Confidence            89887777765443

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=94.56  E-value=0.09  Score=37.75  Aligned_cols=55  Identities=16%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcC-CCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~-~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |++|..+...|++.     ++.+..+|++ .+.    ++.+..+  ...+|.+++  +|+.
T Consensus        28 lv~f~a~w------C~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~--v~~~Pt~~~~~~G~~   90 (111)
T 2pu9_C           28 VLDMFTQW------CGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELG--IRVVPTFKILKENSV   90 (111)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHC--CSBSSEEEEESSSSE
T ss_pred             EEEEECCc------CHhHHHHCHHHHHHHHHCCCeEEEEEecCcchH----HHHHHcC--CCeeeEEEEEeCCcE
Confidence            45566675      99999888777553     5778888886 443    3445555  678999766  6764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=94.55  E-value=0.089  Score=38.60  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcC-CCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF-MSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~-~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++ .+.    ++.+..+  ...+|.+++  +|+.+
T Consensus        41 vv~f~a~w------C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~--v~~~Pt~~~~~~G~~~  104 (124)
T 1faa_A           41 VLDMFTQW------CGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELG--IRVVPTFKILKENSVV  104 (124)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHC--CSSSSEEEEEETTEEE
T ss_pred             EEEEECCc------CHhHHHHhHHHHHHHHHCCCCEEEEEecCcchH----HHHHHcC--CCeeeEEEEEeCCcEE
Confidence            45667776      99999888877552     5778888886 343    3445555  778999766  88754

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=94.55  E-value=0.016  Score=46.41  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEE-ECCeeeCChHHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF-VEGVHIGDADAIERLNE  182 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vf-i~g~~iGG~d~l~~l~e  182 (251)
                      +.+|+..      .+++|.+++-+|+..|++|+.+.++.. ....++.+..  +...+|.+. .+|..|.+...+.+..+
T Consensus         1 m~Ly~~~------~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~--P~g~vP~L~~~~g~~l~eS~aI~~yL~   71 (202)
T 3r2q_A            1 MKLVGSY------TSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFN--PLGKVPVLVTEEGECWFDSPIIAEYIE   71 (202)
T ss_dssp             CEEEECS------SCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTC--TTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             CEEEeCC------CCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhC--CCCCcCeEEecCCcEEecHHHHHHHHH
Confidence            3578777      499999999999999999999988643 1122333333  367899998 68888888777666443

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=94.52  E-value=0.055  Score=45.64  Aligned_cols=71  Identities=10%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.++.+|+...      ++.|.+++-+|+..|++|+.+.++.+  ...++++..  ....+|.+..+|..|.+...+.+.
T Consensus        47 m~~~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~--~~~e~~~~n--P~gkVPvL~~~g~~l~ES~aI~~Y  116 (249)
T 1m0u_A           47 KHSYTLFYFNV------KALAEPLRYLFAYGNQEYEDVRVTRD--EWPALKPTM--PMGQMPVLEVDGKRVHQSISMARF  116 (249)
T ss_dssp             CCCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTT--THHHHGGGS--GGGCSCEEEETTEEEECHHHHHHH
T ss_pred             CCCeEEEEcCC------cccHHHHHHHHHHcCCCcEEEEeCHH--HHHHHhhcC--CCCCCCEEEECCEEEecHHHHHHH
Confidence            55688998884      99999999999999999999988743  234555543  356899999999988887766664


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus       117 L  117 (249)
T 1m0u_A          117 L  117 (249)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.45  E-value=0.039  Score=41.66  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=38.5

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH----c---CCccceeeccCCHHHHHHHHHHhCCCCC------CCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT----H---LVKFDDKDVFMSRETQQEFKERLGTDVI------NVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~---~v~~~e~dv~~d~~~~~el~~~~g~g~~------~vP~i~i   88 (251)
                      .-|+.|+++|      |++|+++...|++    +   ++.|..+|++.+++.    .+.+  +..      .+|.+++
T Consensus        28 ~vlv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~--~v~~~~~~~~~Pt~~~   93 (137)
T 2dj0_A           28 TWIVEFFANW------SNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDV----STRY--KVSTSPLTKQLPTLIL   93 (137)
T ss_dssp             CEEEEECCTT------CSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHH----HHHT--TCCCCSSSSCSSEEEE
T ss_pred             EEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHH----HHHc--cCcccCCcCCCCEEEE
Confidence            3589999998      9999988877765    2   577777888877664    3444  344      7899864

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=94.43  E-value=0.033  Score=45.38  Aligned_cols=63  Identities=10%  Similarity=0.016  Sum_probs=45.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHH---HHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~---~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      |..+++|..+       .++|.+++-+|+.+|++|+.+.|+....   ...++.++.  ....+|++..+|..+.
T Consensus         1 M~~~~Ly~~~-------~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~   66 (217)
T 4hz4_A            1 MVMITLHYLK-------QSCSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQH--PLGKAPVLQDGDLVLA   66 (217)
T ss_dssp             --CEEEEEES-------SSTTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTS--TTCCSCEEEETTEEEE
T ss_pred             CceEEEeecC-------CCcHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcC--CCCCCCEEEECCEeee
Confidence            4568999988       3479999999999999999988865421   134555554  3567999987765543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=94.36  E-value=0.019  Score=45.33  Aligned_cols=48  Identities=15%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             HHHHHHHHhcCCceeEEEc-CCCHHHHHHHH------HHhCCCCCCCceEEECCeee
Q psy15946        122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFK------ERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~------~~~g~~~~~vP~vfi~g~~i  171 (251)
                      ..+..++...|+.-...+- ..+.+..+.+.      +.+|  ...+|.+||||+|+
T Consensus       107 ~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g--v~gTPtfiINGky~  161 (184)
T 4dvc_A          107 QELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSG--LTGVPAVVVNNRYL  161 (184)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEETTTEE
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcC--CCcCCEEEECCEEe
Confidence            4567777888875443332 13334433332      3344  78899999999974

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=94.36  E-value=0.012  Score=48.60  Aligned_cols=58  Identities=10%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-ecccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHI   93 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~   93 (251)
                      .+|..+.      ||+|++|+-+|+.+|++|+.+.|+.... -+++.++.  ....||++.. ||..+
T Consensus        24 KLy~~~~------SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~n--P~gkVPvL~~~dG~~l   82 (225)
T 4glt_A           24 KLLYSNT------SPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHN--PLGKIPVLILPDGESL   82 (225)
T ss_dssp             EEEECSS------CHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTC--TTCCSCEEECTTSCEE
T ss_pred             eEecCCC------CHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhC--CCCCCCEEEeCCCCEE
Confidence            6899995      9999999999999999999888764321 12345443  3457999987 44554

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=94.26  E-value=0.0088  Score=47.91  Aligned_cols=56  Identities=9%  Similarity=0.082  Sum_probs=36.2

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..|+.|+++|      ||+|+...-.|++.     ++.+..+|++.+++..+.+.   ..+..++|.+++
T Consensus        56 ~vvv~F~A~W------C~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~---~~~v~~iPt~i~  116 (167)
T 1z6n_A           56 YRLLVAGEMW------CPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRL---ALERIAIPLVLV  116 (167)
T ss_dssp             EEEEEECCTT------CHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTT---TCSSCCSSEEEE
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHH---HcCCCCcCeEEE
Confidence            4688899998      99999988888764     34555556554433222211   124678998754

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=94.25  E-value=0.055  Score=43.68  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      .+++|+.+.      ||+|.+++-+|+.+|++|+.+.++... ...++   .  ....+|++..+|..+.
T Consensus         2 m~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~---~--P~g~vP~L~~~~~~l~   59 (214)
T 3cbu_A            2 MLKLCGFAA------SNYYNKVKLALLEKNVPFEEVLAWIGE-TDTTA---T--PAGKVPYMITESGSLC   59 (214)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHHTCCEEEEECCTTS-SCTTT---S--TTCCSCEEEETTEEEC
T ss_pred             eEEEecCCC------CcHhHHHHHHHHhCCCCCEEEecCccc-CCccc---C--CCCCCCEEEECCeeee
Confidence            478999996      999999999999999999998886411 01122   2  4567999988775443

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=94.24  E-value=0.095  Score=39.70  Aligned_cols=56  Identities=16%  Similarity=0.277  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|.+.      .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        28 lv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~   91 (140)
T 3hz4_A           28 VVMFYSPA------CPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPW----TAEKYG--VQGTPTFKFFCHGRPV   91 (140)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHH----HHHHHT--CCEESEEEEEETTEEE
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHh----HHHHCC--CCcCCEEEEEeCCcEE
Confidence            56677776      99999887776443      26788888887754    444554  678999776  88654

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=94.17  E-value=0.11  Score=42.88  Aligned_cols=66  Identities=11%  Similarity=0.015  Sum_probs=50.4

Q ss_pred             eeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHH
Q psy15946        106 MYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERL  180 (251)
Q Consensus       106 iyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l  180 (251)
                      +|+..       +++|.+++-+|+..|++|+.+.++..  .....++.+...  ...+|.+.. +|..|.+...+.+.
T Consensus         6 Ly~~~-------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P--~g~vPvL~~~dg~~l~eS~aI~~y   74 (238)
T 4exj_A            6 LYTGP-------TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNP--AGIVPTLVDDKGTPITESNNILLY   74 (238)
T ss_dssp             EEECS-------STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCT--TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             EeeCC-------CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCC--CCCCCEEEeCCCcEEeeHHHHHHH
Confidence            77755       99999999999999999999887653  344556666753  679999988 46888777766654

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=94.17  E-value=0.039  Score=44.40  Aligned_cols=61  Identities=16%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ++++|+.+       .++|.+++-+|+..|++|+.+.++.......++.++.  ....+|++..+|..+.
T Consensus         2 ~~~Ly~~~-------~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~   62 (207)
T 2x64_A            2 HMKLYIMP-------GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALN--PSGAVPALQVGDWVLT   62 (207)
T ss_dssp             CEEEEECT-------TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTC--TTCCSCEEEETTEEEC
T ss_pred             eEEEEcCC-------CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcC--CCCcCCeEeECCEEEe
Confidence            57899987       4569999999999999999988875421123455543  3467999986655443

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=94.16  E-value=0.059  Score=43.02  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCCceeEEEc-CCCHHHHHHHH------HHhCCCCCCCceEEECCeee-CCh
Q psy15946        122 LKVKQILRTHLVKFDDKDV-FMSRETQQEFK------ERLGTDVINVPQIFVEGVHI-GDA  174 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~------~~~g~~~~~vP~vfi~g~~i-GG~  174 (251)
                      ..+.+++.+.|++...++- ..+.+..+.+.      ...|  ...+|.+||||+++ +|.
T Consensus       112 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtPt~ving~~~~~g~  170 (193)
T 2rem_A          112 DELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVR--PVGTPTIVVNGRYMVTGH  170 (193)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHC--CSSSSEEEETTTEEECCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CCCCCeEEECCEEEecCC
Confidence            5677788888886543321 12333333332      3344  78899999999975 764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=94.14  E-value=0.051  Score=40.27  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHH---HH----c--CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQIL---RT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L---~~----~--~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|++....|   ..    .  ++.+..+|++.  +...++.+.+  +...+|.+++
T Consensus        27 ~k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~~--~v~~~Pt~~~   92 (130)
T 2kuc_A           27 DKLLFVDCFTTW------CGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEK--GEGVELRKKY--GVHAYPTLLF   92 (130)
T ss_dssp             SSCEEEEECCTT------CTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSS--TTHHHHHHHT--TCCSSCEEEE
T ss_pred             CCeEEEEEECCC------CccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCC--cchHHHHHHc--CCCCCCEEEE
Confidence            345788889997      99999987766   21    1  23334444443  2224455566  5677999976

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=94.13  E-value=0.13  Score=37.77  Aligned_cols=51  Identities=27%  Similarity=0.415  Sum_probs=37.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|+++|      |+.|..+...|++     .++.+..+|++.+.+    +.+..+  ...+|.+++
T Consensus        27 lv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~--i~~~Pt~~~   82 (118)
T 2f51_A           27 LVDFFATW------CGPCQRLGQILPSIAEANKDVTFIKVDVDKNGN----AADAYG--VSSIPALFF   82 (118)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHhcC--CCCCCEEEE
Confidence            45677776      9999988887765     478888999987754    445555  678999654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=94.10  E-value=0.26  Score=37.39  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++      ..+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        59 lv~F~a~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~  122 (148)
T 3p2a_A           59 VIDFWAPW------CGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA----LSTRFR--IRSIPTIMLYRNGKMI  122 (148)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH----HHHHCC--CCccCEEEEEECCeEE
Confidence            45677776      9999988877754      256777888887764    445555  778998755  77643

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=94.09  E-value=0.052  Score=43.85  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++++|+...      +++|.+++-+|+..|++|+.+.++...  ..++.+..  ....+|.+..+|..|.+...+.+..
T Consensus         2 ~~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~yL   70 (208)
T 1tu7_A            2 SYKLTYFSI------RGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQF--QFGQLPCLYDGDQQIVQSGAILRHL   70 (208)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGS--TTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEcCC------CcchHHHHHHHHHcCCCceEEEEcHHH--HHHhccCC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            357888774      899999999999999999998876432  12344443  3568999999998888777666643

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=94.05  E-value=0.082  Score=42.94  Aligned_cols=70  Identities=11%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH---HHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE---TQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~---~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      .+++|+..       .+.|.+++-+|+..|++|+.+.++....   ...++.+..  ....+|.+..+|..+.+...+.+
T Consensus         3 ~~~Ly~~~-------~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI~~   73 (217)
T 4hz4_A            3 MITLHYLK-------QSCSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQH--PLGKAPVLQDGDLVLAEGNAIIQ   73 (217)
T ss_dssp             CEEEEEES-------SSTTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTS--TTCCSCEEEETTEEEECHHHHHH
T ss_pred             eEEEeecC-------CCcHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcC--CCCCCCEEEECCEeeecHHHHHH
Confidence            46788766       3469999999999999999988865421   234555554  36799999999999988777666


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        74 yL   75 (217)
T 4hz4_A           74 HL   75 (217)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=94.05  E-value=0.056  Score=40.53  Aligned_cols=56  Identities=11%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|..+...|++    +  .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        44 lv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~G~~~  107 (128)
T 2o8v_B           44 LVDFWAEW------CGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG--IRGIPTLLLFKNGEVA  107 (128)
T ss_dssp             EEEEECSS------CHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGGT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC--CCccCEEEEEeCCEEE
Confidence            56677776      9999987776654    2  46778888876643    333444  678999877  88743

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=94.00  E-value=0.018  Score=47.35  Aligned_cols=60  Identities=10%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee-eccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIG   94 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i-~g~~~g   94 (251)
                      ++||+.+.      ||+|.+++-+|+.+|++|+.+.++.... ..++.++.  ....+|++.+ +|..+.
T Consensus         3 ~~Ly~~~~------sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~n--P~g~vPvL~~~~g~~l~   63 (226)
T 3tou_A            3 MKLIGSHA------SPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFN--PLGKVPCLVMDDGGALF   63 (226)
T ss_dssp             CEEEECSS------CHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTC--TTCCSCEEECTTSCEEC
T ss_pred             EEEecCCC------CchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhC--CCCCCCEEEeCCCCEec
Confidence            68999996      9999999999999999999988764321 12233333  4567999986 555443

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=93.99  E-value=0.2  Score=36.64  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=37.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHH-------------------HHHHhCCCCC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQE-------------------FKERLGTDVI  159 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~e-------------------l~~~~g~~~~  159 (251)
                      ++.|..+|      |+.|......|++.     ++.+..++++.+.+..++                   +.+..+  ..
T Consensus        29 ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~  100 (136)
T 1zzo_A           29 VLWFWAPW------CPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG--VT  100 (136)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTT--CC
T ss_pred             EEEEEcCC------ChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcC--CC
Confidence            45556664      99999776666544     577778887665433332                   333333  56


Q ss_pred             CCceEEE---CCee
Q psy15946        160 NVPQIFV---EGVH  170 (251)
Q Consensus       160 ~vP~vfi---~g~~  170 (251)
                      .+|.+++   +|+.
T Consensus       101 ~~P~~~~id~~g~i  114 (136)
T 1zzo_A          101 QQPAYAFVDPHGNV  114 (136)
T ss_dssp             SSSEEEEECTTCCE
T ss_pred             CCceEEEECCCCCE
Confidence            7899766   6764

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=93.98  E-value=0.055  Score=44.83  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      +.+++||..+       |++|.+++-+|+.+|++|+.+.|+...  ....++.++.  ....+|++..+
T Consensus        20 ~~~~~Ly~~~-------~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~   79 (244)
T 4ikh_A           20 PEWIQLYSLP-------TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVS--PNNKIPAILDP   79 (244)
T ss_dssp             TTSEEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTC--TTSCSCEEEET
T ss_pred             CCeeEEEeCC-------CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcC--CCCCCCEEEec
Confidence            4689999988       899999999999999999988776432  2344566554  45679999873

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=93.98  E-value=0.033  Score=45.92  Aligned_cols=71  Identities=10%  Similarity=0.034  Sum_probs=52.8

Q ss_pred             heeeeeeecccccCCC-----cchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        103 KIVMYSTTMGIVRDTY-----HRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc-----~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      ++++|+...      |     ++|.+++-+|+..|++|+.+.++.......++.+..  +...+|.+..+|..|.+...+
T Consensus        18 ~~~Ly~~~~------s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~eS~aI   89 (230)
T 2ycd_A           18 TITVFERSP------DGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQ--PFGQIPSYEQGDLILFESGAI   89 (230)
T ss_dssp             EEEEESSCT------TTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTC--TTSCSCEEEETTEEEECHHHH
T ss_pred             eEEEecCCC------ccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcC--CCCCCCEEEECCEEEEcHHHH
Confidence            588998873      6     899999999999999999988864211222333333  367899999999988887776


Q ss_pred             HHHH
Q psy15946        178 ERLN  181 (251)
Q Consensus       178 ~~l~  181 (251)
                      .+..
T Consensus        90 ~~yL   93 (230)
T 2ycd_A           90 VMHI   93 (230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=93.95  E-value=0.12  Score=36.53  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++.      .+.+..+|++.+++    +.+..+  ...+|.+  |-+|+.+
T Consensus        25 lv~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--i~~~Pt~~~~~~g~~~   88 (109)
T 3tco_A           25 LVDCWAEW------CAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK----IADKYS--VLNIPTTLIFVNGQLV   88 (109)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHhhhHHHHHHHHHhCCCceEEEEccccCHH----HHHhcC--cccCCEEEEEcCCcEE
Confidence            55667775      99999888766543      36677888877765    344554  7789994  4478643

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=93.94  E-value=0.037  Score=35.86  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=13.1

Q ss_pred             ccccccCCcce---eeCCCCCCCcee
Q psy15946        200 TICQVCGGYRL---LPCSLCNGSKKS  222 (251)
Q Consensus       200 ~~C~~Cgg~~~---~~C~~C~gs~k~  222 (251)
                      ..|..|+|+|-   -+|+.|+|+..+
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v   35 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVI   35 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEE
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEE
Confidence            35666666665   356666666554

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=93.89  E-value=0.1  Score=41.92  Aligned_cols=70  Identities=17%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      .+.+|+..       .+.|.+++-+|+..|++|+.+.++.......++.+..  +...+|.+..+|..|.+...+.+..
T Consensus         2 ~~~Ly~~~-------~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~--P~g~vP~L~~~g~~l~eS~aI~~yL   71 (207)
T 2x64_A            2 HMKLYIMP-------GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALN--PSGAVPALQVGDWVLTQNAAILNYI   71 (207)
T ss_dssp             CEEEEECT-------TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTC--TTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEcCC-------CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcC--CCCcCCeEeECCEEEeeHHHHHHHH
Confidence            35778755       3468999999999999999998865321223455544  3678999999999898887776643

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=93.85  E-value=0.2  Score=38.91  Aligned_cols=55  Identities=13%  Similarity=0.261  Sum_probs=40.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      |+.|.++|      |+.|..+...|++.      .+.|..+|++.+++    +.+..+  ...+|.+++  +|+.
T Consensus        68 lv~F~a~w------C~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----l~~~~~--i~~~Pt~~~~~~G~~  130 (155)
T 2ppt_A           68 LVDFWAPW------CGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA----VAGRHR--IQGIPAFILFHKGRE  130 (155)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH----HHHHcC--CCcCCEEEEEeCCeE
Confidence            56677776      99999887777532      57888889887654    455555  778999766  7874

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=93.84  E-value=0.13  Score=41.38  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +++|+..      .+++|.+++-+|+..|++|+.+.++.. ....++   .  +...+|.+..+|..|.+...+.+..
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~---~--P~g~vP~L~~~~~~l~eS~aI~~yL   68 (214)
T 3cbu_A            3 LKLCGFA------ASNYYNKVKLALLEKNVPFEEVLAWIG-ETDTTA---T--PAGKVPYMITESGSLCESEVINEYL   68 (214)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCTT-SSCTTT---S--TTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             EEEecCC------CCcHhHHHHHHHHhCCCCCEEEecCcc-cCCccc---C--CCCCCCEEEECCeeeecHHHHHHHH
Confidence            6788877      499999999999999999999988641 111122   2  4678999999998888877766643

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=93.82  E-value=0.034  Score=44.37  Aligned_cols=58  Identities=10%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCce--eeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i--~i~g~~~   93 (251)
                      .-||-|+++|      |++|+.+.-+|++.      .+.|..+||+..++.    .+.+  +..++|++  |-+|+.+
T Consensus        43 ~VVVdF~A~W------CgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~----a~~y--~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           43 LVCIRFGHDY------DPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF----NTMY--ELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             EEEEEEECTT------SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTTT--TCCSSEEEEEEETTEEE
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHc--CCCCCCEEEEEECCEEE
Confidence            3567799998      99999998888863      266788899988874    3344  46779998  4667665

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=93.80  E-value=0.18  Score=40.02  Aligned_cols=55  Identities=9%  Similarity=0.107  Sum_probs=32.4

Q ss_pred             HHHHHHHHhcCCceeE---EE--cC-CCHHHHHHHH------HHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        122 LKVKQILRTHLVKFDD---KD--VF-MSRETQQEFK------ERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e---~d--v~-~~~~~~~el~------~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ..+..+..+.|++...   +.  +. .+.+..+.+.      ...|  ...+|.+||||+++-|+....
T Consensus       101 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~GtPt~vvnG~~~~G~~~~~  167 (186)
T 3bci_A          101 ELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNH--IKTTPTAFINGEKVEDPYDYE  167 (186)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTT--CCSSSEEEETTEECSCTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcC--CCCCCeEEECCEEcCCCCCHH
Confidence            4667777778876443   21  10 2222222222      2334  789999999999997754433

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=93.74  E-value=0.13  Score=42.04  Aligned_cols=39  Identities=15%  Similarity=0.211  Sum_probs=26.8

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHH----HHHH-c----CCccceeeccCCH
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQ----ILRT-H----LVKFDDKDVFMSR   66 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~----~L~~-~----~v~~~e~dv~~d~   66 (251)
                      ...+|+.|+--.      ||+|.+...    .|++ +    .|.|..+++....
T Consensus        29 a~vtvvef~D~~------CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~   76 (202)
T 3gha_A           29 APVTVVEFGDYK------CPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG   76 (202)
T ss_dssp             CSEEEEEEECTT------CHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH
T ss_pred             CCEEEEEEECCC------ChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccc
Confidence            445889999885      999998743    3333 2    4678888876543

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=93.69  E-value=0.14  Score=37.72  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=45.9

Q ss_pred             chheeeeeeecccccCCCcchH------HHHHHHH--------hcCCceeEEEcCCCHH----HHHHHHHHhCCCCCCCc
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCL------KVKQILR--------THLVKFDDKDVFMSRE----TQQEFKERLGTDVINVP  162 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~------~~k~lL~--------~~~v~~~e~dv~~~~~----~~~el~~~~g~~~~~vP  162 (251)
                      +-.|++|....     .|.-|-      ....+|+        +....|.++|+...++    ..+++.++.-...--.|
T Consensus         7 ~v~i~VYGAe~-----iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYP   81 (111)
T 1xg8_A            7 SNAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             CEEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             EEEEEEEcccc-----cchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccce
Confidence            34578888874     687775      3333332        3345688999965432    24444444333567789


Q ss_pred             eEEECCeeeC-ChHHHHHH
Q psy15946        163 QIFVEGVHIG-DADAIERL  180 (251)
Q Consensus       163 ~vfi~g~~iG-G~d~l~~l  180 (251)
                      .|.|+|++|| |.-.|+..
T Consensus        82 lV~indeiVaEGnp~LK~I  100 (111)
T 1xg8_A           82 LITMNDEYVADGYIQTKQI  100 (111)
T ss_dssp             EEEETTEEEEESSCCHHHH
T ss_pred             EEEECCEEeecCCccHHHH
Confidence            9999999998 44444433

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=93.68  E-value=0.052  Score=44.19  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=41.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeecc--CCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF--MSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~--~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ++||..+.      +++|.+++-+|+.+|++|+.+.|+  ..++...... ..++....+|++..+|..+
T Consensus         3 ~~Ly~~~~------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~-~~~~P~g~vP~L~d~~~~l   65 (218)
T 3iso_A            3 PVLGYWKI------RGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKH-NLGLELPNLPYYKDGNFSL   65 (218)
T ss_dssp             CEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTT-SSCCSSCCSSEEEETTEEE
T ss_pred             cEEEEeCC------CcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhch-hcCCCCCCCCeEEECCEEE
Confidence            57877775      999999999999999999999886  2223221110 1112345699997655544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.67  E-value=0.027  Score=42.03  Aligned_cols=54  Identities=13%  Similarity=0.263  Sum_probs=37.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|+++...|++.        .+.+..+|++.++..    .+.+  +...+|.+++
T Consensus        26 ~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~--~v~~~Pt~~~   87 (133)
T 2dj3_A           26 KDVLIEFYAPW------CGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT----NDQY--KVEGFPTIYF   87 (133)
T ss_dssp             SEEEEEECCTT------CSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCC----CSSC--CCSSSSEEEE
T ss_pred             CcEEEEEECCC------ChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHH----Hhhc--CCCcCCEEEE
Confidence            44688889997      99999998888762        356667777665432    2223  4667899865

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=93.66  E-value=0.045  Score=44.94  Aligned_cols=70  Identities=11%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLNE  182 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~e  182 (251)
                      +.+|+..      .|++|.+++-+|+..|++|+.+.++..... .++.+..  +...+|.+.+ +|..+.+...+.+..+
T Consensus         3 ~~Ly~~~------~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~-~~~~~~n--P~g~vPvL~~~~g~~l~eS~aI~~yL~   73 (226)
T 3tou_A            3 MKLIGSH------ASPYTRKVRVVLAEKKIDYQFVLEDVWNAD-TQIHQFN--PLGKVPCLVMDDGGALFDSRVIAEYAD   73 (226)
T ss_dssp             CEEEECS------SCHHHHHHHHHHHHTTCCCEEEECCTTSTT-CCGGGTC--TTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             EEEecCC------CCchHHHHHHHHHHcCCCcEEEecCccCCc-HHHHHhC--CCCCCCEEEeCCCCEeccHHHHHHHHH
Confidence            5688877      499999999999999999999988643211 1233333  4678999996 7888888777666443

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=93.66  E-value=0.16  Score=37.66  Aligned_cols=58  Identities=9%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeeeC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHIG  172 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~iG  172 (251)
                      -++.|.++|      |+.|..+...|++.      ++.+..+|++.++    ++.+..+  ...+|.+++  +|+.+.
T Consensus        45 vlv~F~a~w------C~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           45 IVLYFFAKW------CQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE----SLARKFS--VKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH----HHHHHTT--CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCC------CHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcC--CCCcCEEEEEECCEEEE
Confidence            345677776      99999887776543      3566777877665    4555565  788999766  787543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=93.48  E-value=0.14  Score=38.29  Aligned_cols=56  Identities=14%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        50 vv~f~a~w------C~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~G~~~  112 (139)
T 3d22_A           50 LANFSARW------CGPSRQIAPYYIELSENYPSLMFLVIDVDELSD----FSASWE--IKATPTFFFLRDGQQV  112 (139)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT--CCEESEEEEEETTEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHH----HHHHcC--CCcccEEEEEcCCeEE
Confidence            45566676      99999888777653     57888889887654    445555  678998654  67643

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=93.44  E-value=0.11  Score=37.68  Aligned_cols=52  Identities=10%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-++.|+++|      |++|++....|++.           .+.+..+|++.++-     .+    +...+|.+++
T Consensus        25 ~~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-----~~----~v~~~Pt~~~   87 (121)
T 2djj_A           25 TKDVLIEFYAPW------CGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDV-----PD----EIQGFPTIKL   87 (121)
T ss_dssp             TSCEEEEEECSS------CTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCC-----SS----CCSSSSEEEE
T ss_pred             CCCEEEEEECCC------CHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccc-----cc----ccCcCCeEEE
Confidence            345788899998      99999998887752           46677778776541     11    4567898865

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=93.43  E-value=0.076  Score=42.94  Aligned_cols=55  Identities=16%  Similarity=0.173  Sum_probs=42.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++||+.+       ||+|.+++-+|+.+|++|+.+.++...  ....++.++.  ....+|++..+
T Consensus         2 ~~Ly~~~-------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~   58 (215)
T 3gx0_A            2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVDH   58 (215)
T ss_dssp             EEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTC--TTSCSCEEEES
T ss_pred             eEEEeCC-------CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhC--CCCCCCEEEeC
Confidence            6899877       999999999999999999988776543  2234555553  34679999887

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.42  E-value=0.22  Score=36.62  Aligned_cols=55  Identities=18%  Similarity=0.329  Sum_probs=37.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|+++|      |++|..+...|.+          ..+.+..+|++.+.+    +.+..+  ...+|.+++  +|+.
T Consensus        29 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~g~~   95 (133)
T 1x5d_A           29 MVEFYAPW------CGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV----LASRYG--IRGFPTIKIFQKGES   95 (133)
T ss_dssp             EEEEECTT------CHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH----HHHHHT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------CHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH----HHHhCC--CCeeCeEEEEeCCCc
Confidence            56677776      9999977665543          347788888876643    444554  678999755  6653

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=93.41  E-value=0.19  Score=37.56  Aligned_cols=38  Identities=8%  Similarity=0.019  Sum_probs=26.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSR   66 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~   66 (251)
                      ...|+.|..+|      |++|......|.+.        ++.+..++++.+.
T Consensus        29 k~vll~F~a~w------C~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~   74 (144)
T 1o73_A           29 KTVFLYFSASW------CPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENE   74 (144)
T ss_dssp             CEEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSH
T ss_pred             CEEEEEEECcC------CHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCH
Confidence            34577788887      99999877766652        4556666666654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=93.41  E-value=0.13  Score=43.18  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=24.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHH----HcCCccceeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILR----THLVKFDDKDV   62 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~----~~~v~~~e~dv   62 (251)
                      ...|++|+-++      ||+|++....|.    ..+|.+..+++
T Consensus        98 k~~v~~F~D~~------Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A           98 PVIVYVFADPF------CPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CeEEEEEECCC------ChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            34799999997      999999865544    33466666554

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=93.40  E-value=0.22  Score=40.27  Aligned_cols=69  Identities=12%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcC--CCHHHHHHHHHHh--CCCCCCCceEEECCeeeCChHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVF--MSRETQQEFKERL--GTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~--~~~~~~~el~~~~--g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +++|+..      .+++|.+++-+|+..|++|+.+.++  ..++.   +....  +.....+|.+..+|..|.+...+.+
T Consensus         3 ~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~---~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~   73 (218)
T 3iso_A            3 PVLGYWK------IRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKW---QNDKHNLGLELPNLPYYKDGNFSLTQSLAILR   73 (218)
T ss_dssp             CEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHH---HHHTTSSCCSSCCSSEEEETTEEEESHHHHHH
T ss_pred             cEEEEeC------CCcchHHHHHHHHHcCCCceeeccCCCCHHHH---HhhchhcCCCCCCCCeEEECCEEEecHHHHHH
Confidence            5677766      4999999999999999999999885  22222   22221  1245679999888888877776665


Q ss_pred             HH
Q psy15946        180 LN  181 (251)
Q Consensus       180 l~  181 (251)
                      ..
T Consensus        74 yL   75 (218)
T 3iso_A           74 YI   75 (218)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=93.39  E-value=0.12  Score=39.91  Aligned_cols=58  Identities=14%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CCeEEEEe-ecCCCCCCCCchHHHHHHHH---HH------cCCccceeeccCCH-------HHHHHHHHHhCCCCCCCCc
Q psy15946         23 AGKIVMYS-TTMGIVRDTYHRCLKVKQIL---RT------HLVKFDDKDVFMSR-------ETQQEFKERLGTDVINVPQ   85 (251)
Q Consensus        23 ~~~vvvyt-~~~~~~~~~C~~C~~~k~~L---~~------~~v~~~e~dv~~d~-------~~~~el~~~~g~g~~~vP~   85 (251)
                      ..-++.|. ++|      |++|++....|   .+      .++.+..+|++.+.       +...++.+.+  +...+|.
T Consensus        48 k~vlv~F~ga~w------C~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~--~v~~~Pt  119 (154)
T 2ju5_A           48 KPIGLFFTGSDW------CMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQY--KVTGFPE  119 (154)
T ss_dssp             CCEEEEEECTTT------CHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHT--TCCSSSE
T ss_pred             CeEEEEEeCCCC------CHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHc--CCCCCCE
Confidence            34566666 798      99999988665   21      24666667776654       3345666666  5677999


Q ss_pred             eee
Q psy15946         86 IFV   88 (251)
Q Consensus        86 i~i   88 (251)
                      +++
T Consensus       120 ~~~  122 (154)
T 2ju5_A          120 LVF  122 (154)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=93.30  E-value=0.2  Score=36.83  Aligned_cols=48  Identities=15%  Similarity=0.101  Sum_probs=35.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ...|+.|..+|      |++|.+....|.+.     ++.+..++++.+++..+++.+..
T Consensus        25 k~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   77 (136)
T 1lu4_A           25 KPAVLWFWTPW------CPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKY   77 (136)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CEEEEEEECCc------ChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHc
Confidence            45677888887      99999987777653     57777778877666666655554

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=93.20  E-value=0.15  Score=41.05  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC---C----eeeCCh
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE---G----VHIGDA  174 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~---g----~~iGG~  174 (251)
                      +++|+..       +++|.+++-+|+..|++|+.+.++...  ....++.+..  ....+|.+.++   |    ..|.+.
T Consensus         2 ~~Ly~~~-------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~--P~g~vP~L~~~~~~~dG~~~~l~eS   72 (215)
T 3gx0_A            2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVDHSPADGGEPLSLFES   72 (215)
T ss_dssp             EEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTC--TTSCSCEEEESSCTTCCSCEEEESH
T ss_pred             eEEEeCC-------CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhC--CCCCCCEEEeCCCCCCCCceEEEcH
Confidence            5677654       899999999999999999999876542  2345565554  36789999998   4    778777


Q ss_pred             HHHHHH
Q psy15946        175 DAIERL  180 (251)
Q Consensus       175 d~l~~l  180 (251)
                      ..+.+.
T Consensus        73 ~aI~~y   78 (215)
T 3gx0_A           73 GAILLY   78 (215)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=93.12  E-value=0.12  Score=42.66  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE----CC--eee
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV----EG--VHI  171 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi----~g--~~i  171 (251)
                      .+..+++|+..       +++|.+++-+|+..|++|+.+.++...  ....++.++.  ....+|.+.+    +|  ..|
T Consensus        19 ~~~~~~Ly~~~-------~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~dg~dG~~~~l   89 (244)
T 4ikh_A           19 FPEWIQLYSLP-------TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVS--PNNKIPAILDPHGPGDQPLAL   89 (244)
T ss_dssp             STTSEEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTC--TTSCSCEEEETTCGGGCCEEE
T ss_pred             CCCeeEEEeCC-------CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcC--CCCCCCEEEecCCCCCCceeE
Confidence            45678999876       899999999999999999998876432  2344565554  3678999988    45  577


Q ss_pred             CChHHHHHH
Q psy15946        172 GDADAIERL  180 (251)
Q Consensus       172 GG~d~l~~l  180 (251)
                      .+...+.+.
T Consensus        90 ~eS~aI~~y   98 (244)
T 4ikh_A           90 FESGAILIY   98 (244)
T ss_dssp             ESHHHHHHH
T ss_pred             EcHHHHHHH
Confidence            776666554

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=93.12  E-value=0.086  Score=42.79  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      |..+++|..+       -+.+.+++-+|+.+|++|+.+.|+..  .....++.++.  -...||++.+++
T Consensus         1 M~m~kLY~~p-------~s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~n--P~g~vP~L~~d~   61 (215)
T 4gf0_A            1 MVMLTLYFTP-------GTISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAIN--PKGRVPALRLED   61 (215)
T ss_dssp             CCSEEEEECT-------TSTHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTC--TTCCSCEEECTT
T ss_pred             CCcEEEEeCC-------CCcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhC--CCCCcceEEecC
Confidence            4568999888       35678999999999999998877542  23345666654  345799998763

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=93.11  E-value=0.14  Score=39.47  Aligned_cols=55  Identities=16%  Similarity=0.245  Sum_probs=39.7

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|+.....|++..      +.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        23 ~k~vlv~F~a~W------C~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~   83 (149)
T 3gix_A           23 EKVLVLRFGRDE------DPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV----YTQYF--DISYIPSTVF   83 (149)
T ss_dssp             SSEEEEEEECTT------SHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH----HHHHT--TCCSSSEEEE
T ss_pred             CCEEEEEEECCC------CHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH----HHHHc--CCCccCeEEE
Confidence            344677789998      999999998888742      5566677777665    44455  4667898865

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=92.24  E-value=0.017  Score=43.07  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHH---HH----cC--CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQIL---RT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L---~~----~~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |++|++....|   .+    ..  +.+..+|++  .+...++.+.+  +...+|.+++
T Consensus        20 k~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~~--~v~~~Pt~~~   84 (130)
T 2lst_A           20 RMVMVYFHSEH------CPYCQQMNTFVLSDPGVSRLLEARFVVASVSVD--TPEGQELARRY--RVPGTPTFVF   84 (130)
Confidence            34677789997      99999988666   32    22  344444543  22223444445  4567898865

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=93.10  E-value=0.056  Score=43.27  Aligned_cols=51  Identities=12%  Similarity=-0.017  Sum_probs=31.3

Q ss_pred             HHHHHHHHhc-CCceeEEEc-CCCHHHHHHHH------HHhCCCCCCCceEEECCee-eCCh
Q psy15946        122 LKVKQILRTH-LVKFDDKDV-FMSRETQQEFK------ERLGTDVINVPQIFVEGVH-IGDA  174 (251)
Q Consensus       122 ~~~k~lL~~~-~v~~~e~dv-~~~~~~~~el~------~~~g~~~~~vP~vfi~g~~-iGG~  174 (251)
                      ..+.+++.+. |++...++- ..+.+....+.      ...|  ...+|.+||||++ +.|.
T Consensus       106 ~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g--v~gtPt~ving~~~~~g~  165 (195)
T 2znm_A          106 SVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYR--IDSTPTVIVGGKYRVIFN  165 (195)
T ss_dssp             HHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTT--CCSSSEEEETTTEEECCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcC--CCCCCeEEECCEEEEcCC
Confidence            5677788888 886543321 23333333332      2334  7899999999996 7663

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=92.99  E-value=0.23  Score=37.24  Aligned_cols=39  Identities=10%  Similarity=-0.112  Sum_probs=26.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCHH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSRE   67 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~~   67 (251)
                      ...|+.|.++|      |++|.+....|.+.        ++.+..++++.+.+
T Consensus        29 k~vll~F~a~w------C~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~   75 (144)
T 1i5g_A           29 KTVFFYFSASW------CPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAE   75 (144)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHH
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHH
Confidence            34677788887      99999877666542        45566666665543

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=92.97  E-value=0.15  Score=39.48  Aligned_cols=60  Identities=17%  Similarity=0.387  Sum_probs=38.0

Q ss_pred             eeee-eecccccCCCcchHHHHHHH-------Hh--cCCceeEEEcCCCH-------HHHHHHHHHhCCCCCCCceEEE-
Q psy15946        105 VMYS-TTMGIVRDTYHRCLKVKQIL-------RT--HLVKFDDKDVFMSR-------ETQQEFKERLGTDVINVPQIFV-  166 (251)
Q Consensus       105 viyt-~sl~~ir~tc~~C~~~k~lL-------~~--~~v~~~e~dv~~~~-------~~~~el~~~~g~~~~~vP~vfi-  166 (251)
                      +.|. .+|      |+.|......|       +.  .++.+..+|++.+.       ....++.+..+  ...+|.+++ 
T Consensus        52 v~F~ga~w------C~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~--v~~~Pt~~~~  123 (154)
T 2ju5_A           52 LFFTGSDW------CMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK--VTGFPELVFI  123 (154)
T ss_dssp             EEEECTTT------CHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT--CCSSSEEEEE
T ss_pred             EEEeCCCC------CHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC--CCCCCEEEEE
Confidence            3444 676      99999887655       21  23556666776543       34456777776  778999754 


Q ss_pred             --CCeeeC
Q psy15946        167 --EGVHIG  172 (251)
Q Consensus       167 --~g~~iG  172 (251)
                        +|+.+.
T Consensus       124 d~~G~~~~  131 (154)
T 2ju5_A          124 DAEGKQLA  131 (154)
T ss_dssp             CTTCCEEE
T ss_pred             cCCCCEEE
Confidence              576543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=92.93  E-value=0.064  Score=45.74  Aligned_cols=41  Identities=20%  Similarity=0.639  Sum_probs=31.4

Q ss_pred             CccccccCCccee---------------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL---------------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~---------------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.|.+               +|+.|+|+-+++.        ...+|+.|+-.|.++
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--------PKDRCKSCNGKKVEN  109 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--------TTSBCSSSTTSCEEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec--------cCCCCcccCCCceEe
Confidence            4789999998753               7999999987741        135899999888753

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=92.08  E-value=0.018  Score=40.58  Aligned_cols=58  Identities=16%  Similarity=0.237  Sum_probs=38.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee--eccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVH   92 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~   92 (251)
                      ..-|+.|+++|      |++|+++...|++.      ++.+..+|++.+++.    .+.+  +...+|.+++  +|+.
T Consensus        20 ~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~--~v~~~Pt~~~~~~g~~   85 (106)
T 2yj7_A           20 KPVLVDFWAPW------CGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT----AAQY--GIRSIPTLLLFKNGQV   85 (106)
Confidence            45688888887      99999998887763      355556666655543    3333  3456898876  5543

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=92.85  E-value=0.13  Score=44.11  Aligned_cols=59  Identities=15%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      ...++||+..       ||+|.+++-+|+.+      ||+|+.+.|+...  ....++.++.  ....||++..++
T Consensus        42 ~~~~~Ly~~~-------sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~n--P~gkVPvL~~~~  108 (288)
T 3c8e_A           42 KHPLQLYSLG-------TPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVN--PNSKIPALRDHT  108 (288)
T ss_dssp             SSSEEEEECS-------SHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHC--TTCCSCEEEETT
T ss_pred             CCceEEecCC-------CCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhC--CCCCCCEEEeCC
Confidence            3468999875       99999999999998      9999888776432  2235666664  456799998764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=92.84  E-value=0.25  Score=37.24  Aligned_cols=37  Identities=5%  Similarity=-0.203  Sum_probs=25.7

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc--------CCccceeeccCCH
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH--------LVKFDDKDVFMSR   66 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~--------~v~~~e~dv~~d~   66 (251)
                      ..|+.|..+|      |++|......|.+.        ++.+..++++.+.
T Consensus        30 ~vll~F~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~   74 (146)
T 1o8x_A           30 LVFFYFSASW------CPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEE   74 (146)
T ss_dssp             EEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSH
T ss_pred             EEEEEEEccC------CHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCH
Confidence            4577788887      99999877666542        4556666776654

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=92.83  E-value=0.17  Score=40.71  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCee-----eCChHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVH-----IGDADA  176 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~-----iGG~d~  176 (251)
                      ..+++|+..      .+++|.+++-+|+..|++|+.+.++...  ..++....  +...+|.+.++|..     +.+...
T Consensus         4 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~--P~g~vP~L~~~~~~g~~~~l~eS~a   73 (211)
T 1oe8_A            4 DHIKVIYFN------GRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTI--PGGRLPAVKITDNHGHVKWMVESLA   73 (211)
T ss_dssp             CEEEEEESC------TTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGS--TTSCSCEEEEECTTCCEEEEESHHH
T ss_pred             CceEEEEeC------CCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccC--CCCCCCEEEECCccccceeeccHHH
Confidence            357788776      4899999999999999999999887532  23344333  46789999887654     666665


Q ss_pred             HHHH
Q psy15946        177 IERL  180 (251)
Q Consensus       177 l~~l  180 (251)
                      +.+.
T Consensus        74 I~~y   77 (211)
T 1oe8_A           74 IARY   77 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=92.77  E-value=0.33  Score=37.02  Aligned_cols=48  Identities=13%  Similarity=0.025  Sum_probs=34.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ...|+.|..+|      |++|......|.+.       ++.+..++++.+++..+++.+..
T Consensus        35 k~vlv~f~~~~------C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~   89 (165)
T 3or5_A           35 KAYIVNFFATW------CPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQ   89 (165)
T ss_dssp             CEEEEEEECTT------SHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHH
T ss_pred             CEEEEEEEcCc------CHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHc
Confidence            34677788887      99999987776653       36677777777777666665554

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=92.72  E-value=0.022  Score=46.13  Aligned_cols=60  Identities=8%  Similarity=0.011  Sum_probs=42.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhCCCCCCCCcee-eecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIF-VEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~-i~g~~~   93 (251)
                      +++|+.++      ||+|.+++-+|+.+|++|+...|+...   ....++.++.  ....+|++. .+|..+
T Consensus         3 ~~Ly~~~~------s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~~g~~l   66 (214)
T 4id0_A            3 LTLFHNPA------SPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDN--PLGKIPALRLDNGQVL   66 (214)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTC--TTCCSSEEECTTSCEE
T ss_pred             eEEecCCC------CChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcC--CCcCCCeEEecCCcEe
Confidence            78999996      999999999999999998776654331   1122344443  356799998 555544

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=92.68  E-value=0.21  Score=37.37  Aligned_cols=60  Identities=12%  Similarity=0.210  Sum_probs=40.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH-------Hhc-CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE---CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL-------RTH-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV---EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL-------~~~-~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi---~g~~i  171 (251)
                      |+.|..+|      |+.|.++...|       +.+ ++.+..+|++.+.+...++.+..+  ...+|.+++   +|+.+
T Consensus        35 lv~F~a~w------C~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~--v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           35 MLDLYADW------CVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN--VLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             EEEEECTT------CHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT--CCSSSEEEEECTTSCBC
T ss_pred             EEEEECCC------CHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcC--CCCCCEEEEECCCCCEe
Confidence            45566676      99999876433       222 577778888765455667777776  778999654   56554

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=92.68  E-value=0.27  Score=36.39  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             CCCeEEEEeecCCCCCCCCc-------------hHHHHHHHHHHcCCccceeeccCCHHHHHHHH---HHh-CCCCCCCC
Q psy15946         22 EAGKIVMYSTTMGIVRDTYH-------------RCLKVKQILRTHLVKFDDKDVFMSRETQQEFK---ERL-GTDVINVP   84 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~-------------~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~---~~~-g~g~~~vP   84 (251)
                      .|.+|.||--..     .|+             .=..+-++|+++|+.++.+++..+|..+.+-.   +.+ ..|...+|
T Consensus         3 ~M~~i~ifepam-----CCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP   77 (106)
T 3ktb_A            3 AMKKIEIFDPAM-----CCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALP   77 (106)
T ss_dssp             CCCCEEEEECSC-----SSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCS
T ss_pred             CCceEEEechhh-----ccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCC
Confidence            478999998876     232             12455778899999999999999997543322   222 13678899


Q ss_pred             ceeeecccc
Q psy15946         85 QIFVEGVHI   93 (251)
Q Consensus        85 ~i~i~g~~~   93 (251)
                      .++|||+.+
T Consensus        78 ~~~VDGevv   86 (106)
T 3ktb_A           78 ITLVDGEIA   86 (106)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCEEE
Confidence            999998754

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=92.68  E-value=0.29  Score=36.64  Aligned_cols=55  Identities=24%  Similarity=0.346  Sum_probs=38.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE---CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV---EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi---~g~~  170 (251)
                      |+.|+++|      |++|..+...|++    +  .+.+..+|++.+.+    +.+..+  ...+|.+++   +|+.
T Consensus        42 lv~f~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           42 IVDFYADW------CGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE----LAGAFG--IRSIPSILFIPMEGKP  105 (136)
T ss_dssp             EEEEECTT------SHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSCEEEEECSSSCC
T ss_pred             EEEEECCc------CHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH----HHHHcC--CCCCCEEEEECCCCcE
Confidence            56677776      9999988877754    2  37788888887754    445555  678999654   5653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.65  E-value=0.13  Score=38.42  Aligned_cols=54  Identities=11%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-------c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-------H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-------~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~  169 (251)
                      ++.|+++|      |++|..+...|.+       .  .+.+..+|+..+.    ++.+..+  ...+|.+++  +|+
T Consensus        38 lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~G~  102 (140)
T 2dj1_A           38 LLEFYAPW------CGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS----MLASKFD--VSGYPTIKILKKGQ  102 (140)
T ss_dssp             EEEECCTT------CHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH----HHHHHTT--CCSSSEEEEEETTE
T ss_pred             EEEEECCC------CHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH----HHHHHCC--CCccCeEEEEECCc
Confidence            56677776      9999977666543       1  2777778887664    3455555  678999776  786

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=92.62  E-value=0.51  Score=34.12  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +-|+++|      |+.|..+...|++.     ++.+..+|++.+++    |.+..+  ...+|.+  |-+|+.+
T Consensus        25 v~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~--V~~~PT~~~~~~G~~v   86 (105)
T 3zzx_A           25 IDFYATW------CGPCKMIAPKLEELSQSMSDVVFLKVDVDECED----IAQDNQ--IACMPTFLFMKNGQKL   86 (105)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTT--CCBSSEEEEEETTEEE
T ss_pred             EEEECCC------CCCccCCCcchhhhhhccCCeEEEEEecccCHH----HHHHcC--CCeecEEEEEECCEEE
Confidence            3477787      99999888877543     35567788877654    555555  7889985  5578643

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=92.59  E-value=0.27  Score=39.78  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=36.6

Q ss_pred             hHHHHHHHHhcCCceeEEE-cCCCHHHHHHHHHHhC----CCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        121 CLKVKQILRTHLVKFDDKD-VFMSRETQQEFKERLG----TDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       121 C~~~k~lL~~~~v~~~e~d-v~~~~~~~~el~~~~g----~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      -..+..++.+.|++-++.. ...+.+..+.+.+-..    .+...+|.++|||+.+-|.+.+..|.
T Consensus       123 ~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~Gv~G~Ptfvi~g~~~~G~~~~~~l~  188 (203)
T 2imf_A          123 ESLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLE  188 (203)
T ss_dssp             TTHHHHHHHHHTCCHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSSSEEEETTEEEESGGGHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHHCCCCcCCEEEECCEEEECCCCHHHHH
Confidence            3456667777777533221 1123444444433211    23789999999999998988766554

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=92.59  E-value=0.14  Score=42.60  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEEC-C--eeeCChHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVE-G--VHIGDADAI  177 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~-g--~~iGG~d~l  177 (251)
                      .+++|+..       +++|.+++-+|+..|++|+.+.++...  ....++.+..  +...+|.+.++ |  ..+.+...+
T Consensus         3 m~~Ly~~~-------sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vPvL~~~dg~~~~l~eS~aI   73 (244)
T 4ecj_A            3 MIDLYTAA-------TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRIN--PNGRIPAIVDRDNDDFAVFESGAI   73 (244)
T ss_dssp             CEEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTC--TTCCSCEEEEGGGTTEEEESHHHH
T ss_pred             EEEEecCC-------CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcC--CCCCCCEEEECCCCeEEEecHHHH
Confidence            36788654       899999999999999999998876432  2335555554  36789999986 4  477776666


Q ss_pred             HHHH
Q psy15946        178 ERLN  181 (251)
Q Consensus       178 ~~l~  181 (251)
                      .+..
T Consensus        74 ~~YL   77 (244)
T 4ecj_A           74 LIYL   77 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=92.52  E-value=0.33  Score=35.96  Aligned_cols=56  Identities=18%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHH--h------cCCceeEEEc---CCCHHHHHHHHHHhCCCC---CCCceEEE---
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILR--T------HLVKFDDKDV---FMSRETQQEFKERLGTDV---INVPQIFV---  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~--~------~~v~~~e~dv---~~~~~~~~el~~~~g~~~---~~vP~vfi---  166 (251)
                      ++.|+++|      |++|..+...|.  .      .++.+..+|+   +.+    .++.+..+  .   ..+|.+++   
T Consensus        33 lv~f~a~w------C~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~----~~l~~~~~--v~~~~~~Pt~~~~d~  100 (133)
T 3fk8_A           33 LLVFGANW------CTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRN----LELSQAYG--DPIQDGIPAVVVVNS  100 (133)
T ss_dssp             EEEEECTT------CHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSS----HHHHHHTT--CGGGGCSSEEEEECT
T ss_pred             EEEEcCCC------CHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccch----HHHHHHhC--CccCCccceEEEECC
Confidence            45577776      999999888887  2      2466777888   433    34555655  6   78999654   


Q ss_pred             CCeee
Q psy15946        167 EGVHI  171 (251)
Q Consensus       167 ~g~~i  171 (251)
                      +|+.+
T Consensus       101 ~G~~~  105 (133)
T 3fk8_A          101 DGKVR  105 (133)
T ss_dssp             TSCEE
T ss_pred             CCCEE
Confidence            57654

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=92.52  E-value=0.24  Score=39.79  Aligned_cols=49  Identities=14%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             HHHHHHHHhc-CCceeEEE-cCCCHHHHHHHHHHhC----CCCCCCceEEECCee
Q psy15946        122 LKVKQILRTH-LVKFDDKD-VFMSRETQQEFKERLG----TDVINVPQIFVEGVH  170 (251)
Q Consensus       122 ~~~k~lL~~~-~v~~~e~d-v~~~~~~~~el~~~~g----~~~~~vP~vfi~g~~  170 (251)
                      ..+..++.+. |++-...+ ...+.+..+.+.+-..    .+...+|.++|||++
T Consensus       101 ~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~GtPt~~vng~~  155 (189)
T 3l9v_A          101 DDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEYGVRGTPSVYVRGRY  155 (189)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTE
T ss_pred             HHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCccCEEEECCEE
Confidence            5678888888 98654432 2234444444432211    237889999999985

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.52  E-value=0.34  Score=35.60  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=35.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----cC--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      ++.|+++|      |++|..+...|++    +.  +.+..+|++.+.+    +.+..+  ...+|.+++
T Consensus        39 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~   95 (130)
T 2dml_A           39 LVEFYAPW------CGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS----LGGQYG--VQGFPTIKI   95 (130)
T ss_dssp             EEEEECTT------CSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHHT--CCSSSEEEE
T ss_pred             EEEEECCC------CHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHcC--CCccCEEEE
Confidence            56677776      9999987766643    22  6777888877654    444554  678999866

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=92.51  E-value=0.26  Score=36.11  Aligned_cols=59  Identities=17%  Similarity=0.141  Sum_probs=36.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHH------------------HHHHhCCCCCC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQE------------------FKERLGTDVIN  160 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~e------------------l~~~~g~~~~~  160 (251)
                      ++.|..+|      |+.|......|.+.     ++.+..++++.+.+..++                  +.+..+  ...
T Consensus        28 lv~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~   99 (136)
T 1lu4_A           28 VLWFWTPW------CPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN--VPW   99 (136)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT--CCS
T ss_pred             EEEEECCc------ChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC--CCC
Confidence            45566665      99999766655443     577777787765443333                  233333  677


Q ss_pred             CceEEE---CCee
Q psy15946        161 VPQIFV---EGVH  170 (251)
Q Consensus       161 vP~vfi---~g~~  170 (251)
                      +|.+|+   +|+.
T Consensus       100 ~P~~~lid~~G~i  112 (136)
T 1lu4_A          100 QPAFVFYRADGTS  112 (136)
T ss_dssp             SSEEEEECTTSCE
T ss_pred             CCEEEEECCCCcE
Confidence            899765   5654

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=92.49  E-value=0.034  Score=41.11  Aligned_cols=56  Identities=18%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.     ++.+..+|++.+.+.    .+..+  ...+|.+++  +|+.+
T Consensus        40 vv~f~~~~------C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~----~~~~~--v~~~Pt~~~~~~g~~~  102 (130)
T 1wmj_A           40 IIDFTASW------CGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEV----AEKYN--VEAMPTFLFIKDGAEA  102 (130)
T ss_dssp             BEECCSSS------CSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGG----HHHHT--CCSSCCCCBCTTTTCC
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHH----HHHcC--CCccceEEEEeCCeEE
Confidence            45666665      99999777666543     577788888766543    34444  678898776  67643

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=92.49  E-value=0.076  Score=40.75  Aligned_cols=54  Identities=9%  Similarity=0.220  Sum_probs=38.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|.++|      |++|+.....|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        24 k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~--~i~~~Pt~~~   83 (142)
T 1qgv_A           24 RVVVIRFGHDW------DPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMY--ELYDPCTVMF   83 (142)
T ss_dssp             SEEEEEEECTT------SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSS--CSCSSCEEEE
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH----HHHHc--CCCCCCEEEE
Confidence            34677889998      99999998877652      36677788887665    33334  4677898854

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=92.47  E-value=0.18  Score=37.64  Aligned_cols=46  Identities=9%  Similarity=0.055  Sum_probs=31.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHH----------HHHHHcCCccceeeccCCHHHHHHHHH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVK----------QILRTHLVKFDDKDVFMSRETQQEFKE   74 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k----------~~L~~~~v~~~e~dv~~d~~~~~el~~   74 (251)
                      ...|+.|..+|      |++|....          +.+...++.+..++++.+++...++.+
T Consensus        28 k~vll~F~a~~------C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~   83 (142)
T 3ewl_A           28 QYTMLFFYDPD------CSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAV   83 (142)
T ss_dssp             SEEEEEECCSS------CHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHT
T ss_pred             CEEEEEEECCC------CccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHH
Confidence            34677788887      99999953          333445677777788777665555544

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=92.41  E-value=0.3  Score=41.81  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECC----
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG----  168 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g----  168 (251)
                      ...+++|+..       |++|.+++-+|+..      ||+|+.+.++...  ....++.++.  +...||.+..+|    
T Consensus        42 ~~~~~Ly~~~-------sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~n--P~gkVPvL~~~~g~~~  112 (288)
T 3c8e_A           42 KHPLQLYSLG-------TPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVN--PNSKIPALRDHTHNPP  112 (288)
T ss_dssp             SSSEEEEECS-------SHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHC--TTCCSCEEEETTSSSC
T ss_pred             CCceEEecCC-------CCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhC--CCCCCCEEEeCCCCCc
Confidence            3458889753       89999999999998      9999988876432  2335666665  367999999875    


Q ss_pred             eeeCChHHHHHH
Q psy15946        169 VHIGDADAIERL  180 (251)
Q Consensus       169 ~~iGG~d~l~~l  180 (251)
                      ..|.....+.+.
T Consensus       113 ~~l~ES~aI~~Y  124 (288)
T 3c8e_A          113 IRVFESGSILLY  124 (288)
T ss_dssp             EEEESHHHHHHH
T ss_pred             eEEeCHHHHHHH
Confidence            677776665554

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=92.38  E-value=0.37  Score=36.51  Aligned_cols=47  Identities=13%  Similarity=-0.041  Sum_probs=30.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKER   75 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~   75 (251)
                      ...|+.|..+|      |++|......|.+       .++.+..++++.+.+...++.+.
T Consensus        30 k~vll~F~a~~------C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~   83 (152)
T 2lrn_A           30 KYVLVDFWFAG------CSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEE   83 (152)
T ss_dssp             SEEEEEEECTT------CTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEEEECCC------ChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHH
Confidence            34577788887      9999987666554       23666667777666554444433

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=92.38  E-value=0.34  Score=35.64  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             CCeEEEEeecCCCCCCCCchH------HHHHHHHHH--------cCCccceeeccCCHHH----HHHHHHHhCCCCCCCC
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRC------LKVKQILRT--------HLVKFDDKDVFMSRET----QQEFKERLGTDVINVP   84 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C------~~~k~~L~~--------~~v~~~e~dv~~d~~~----~~el~~~~g~g~~~vP   84 (251)
                      +-.|+||++.-     .|+.|      +..-+||+.        +.+.|+++||...++.    .+++.+..-....-.|
T Consensus         7 ~v~i~VYGAe~-----iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYP   81 (111)
T 1xg8_A            7 SNAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             CEEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             EEEEEEEcccc-----cchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccce
Confidence            34799999987     78888      455666653        3467899999765543    3444443322445579


Q ss_pred             ceeeecccccc
Q psy15946         85 QIFVEGVHIGT   95 (251)
Q Consensus        85 ~i~i~g~~~gG   95 (251)
                      .+.++|+.++.
T Consensus        82 lV~indeiVaE   92 (111)
T 1xg8_A           82 LITMNDEYVAD   92 (111)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEeec
Confidence            99999998754

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=92.33  E-value=0.091  Score=33.99  Aligned_cols=12  Identities=25%  Similarity=0.775  Sum_probs=6.1

Q ss_pred             eeCCCCCccccc
Q psy15946        235 LKCMNCDEVGLV  246 (251)
Q Consensus       235 ~~C~~Cnengl~  246 (251)
                      ..|+.|+-.|.+
T Consensus        24 ~~C~~C~G~G~v   35 (53)
T 2bx9_A           24 TPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEE
T ss_pred             CCCccCCCCccE
Confidence            345555555543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=92.33  E-value=0.31  Score=39.55  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|+.+...|++.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus       114 ~~~vlv~F~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pt~~~  174 (210)
T 3apq_A          114 GELWFVNFYSPG------CSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM----LCRMK--GVNSYPSLFI  174 (210)
T ss_dssp             SCCEEEEEECTT------CHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CCcEEEEEeCCC------ChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH----HHHHc--CCCcCCeEEE
Confidence            456788899998      99999998887763      26677778877765    44455  5677999876

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=92.30  E-value=0.45  Score=38.40  Aligned_cols=71  Identities=15%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHh--CCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL--GTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~--g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      +.+|+..      .++.|.+++-+|+..||+|+.+.++.. ...+.+....  +.....+|.+..+|..|.+...+.+..
T Consensus         2 ~~L~y~~------~~~~~~~v~~~L~~~gi~ye~~~v~~~-~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 2fhe_A            2 AKLGYWK------IRGLQQPVRLLLEYLGEKYEEQIYERD-DGEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRYI   74 (216)
T ss_dssp             EEEEEES------SSTTTHHHHHHHHHTTCCEEEEEECTT-CHHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             cEEEEcC------CCchhHHHHHHHHHcCCCceEEeeCCC-chhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            4566666      389999999999999999999988753 1112222221  113568999987888888777666643

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=92.28  E-value=0.46  Score=36.43  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVF   63 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~   63 (251)
                      ...|+.|..+|      |++|......|.+.     ++.+..++++
T Consensus        38 k~~lv~F~~~~------C~~C~~~~~~l~~l~~~~~~v~vv~i~~d   77 (165)
T 3ha9_A           38 DVVILWFMAAW------CPSCVYMADLLDRLTEKYREISVIAIDFW   77 (165)
T ss_dssp             SEEEEEEECTT------CTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CEEEEEEECCC------CcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence            34677788887      99999877776653     4566666666

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=92.24  E-value=0.35  Score=36.43  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=33.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHHh
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      ...|+.|..+|      |++|.+....|.+       .++.+..++++.+++..+.+.+..
T Consensus        27 k~vlv~F~~~~------C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~   81 (151)
T 2f9s_A           27 KGVFLNFWGTW------CEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSY   81 (151)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHH
T ss_pred             CEEEEEEECCC------CHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHc
Confidence            34677788887      9999987766654       257777778877766655555544

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=92.22  E-value=0.4  Score=35.76  Aligned_cols=55  Identities=24%  Similarity=0.158  Sum_probs=38.9

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      .-|+-|.++|      |+.|+.+...|++.     ++.|..+|++...       +.+  +..++|.+.  -+|+.+
T Consensus        25 ~vvv~F~a~w------c~~C~~~~p~l~~la~~~~~v~f~kvd~d~~~-------~~~--~v~~~PT~~~fk~G~~v   86 (118)
T 3evi_A           25 WVIIHLYRSS------IPMCLLVNQHLSLLARKFPETKFVKAIVNSCI-------QHY--HDNCLPTIFVYKNGQIE   86 (118)
T ss_dssp             EEEEEEECTT------SHHHHHHHHHHHHHHHHCTTSEEEEEEGGGTS-------TTC--CGGGCSEEEEEETTEEE
T ss_pred             eEEEEEeCCC------ChHHHHHHHHHHHHHHHCCCCEEEEEEhHHhH-------HHC--CCCCCCEEEEEECCEEE
Confidence            3566788897      99999999998874     4667777877541       233  567899985  455543

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=92.13  E-value=0.17  Score=40.94  Aligned_cols=62  Identities=15%  Similarity=0.261  Sum_probs=41.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--H-HHHHHH-HHh--CCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--E-TQQEFK-ERL--GTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~-~~~el~-~~~--g~g~~~vP~i~i~g~~~   93 (251)
                      +++|..+.      +++|.+++-+|+.+|++|+.+.++...  + ...++. ...  |.....+|++..+|..+
T Consensus         3 ~~Ly~~~~------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l   70 (218)
T 2c4j_A            3 MTLGYWNI------RGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKI   70 (218)
T ss_dssp             EEEEEESS------SGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEE
T ss_pred             cEEEEeCC------CchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEe
Confidence            67888875      999999999999999999988876532  1 122332 221  10134699997555443

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=91.34  E-value=0.027  Score=41.87  Aligned_cols=59  Identities=17%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH---H----hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE----CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL---R----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV----EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL---~----~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi----~g~~  170 (251)
                      ++.|.++|      |++|..+...|   .    .++-.+..+.|+.+.+...++.+..+  ...+|.+++    +|+.
T Consensus        23 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~--v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           23 MVYFHSEH------CPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYR--VPGTPTFVFLVPKAGAW   92 (130)
Confidence            45567776      99999887665   2    22222333333333233345555555  678999765    4665

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=92.10  E-value=0.33  Score=39.38  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHH----HHHHHHHHh--CCCCCCCceEEECCeeeCChHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRE----TQQEFKERL--GTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~----~~~el~~~~--g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +++|+..      .++.|.+++-+|+..|++|+.+.++....    ..+++.+..  |.....+|.+..+|..|.+...+
T Consensus         2 ~~L~~~~------~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI   75 (219)
T 1gsu_A            2 VTLGYWD------IRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAI   75 (219)
T ss_dssp             EEEEEES------SSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             cEEEEeC------CCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHH
Confidence            3566666      38999999999999999999888764321    123343332  11356899998888888887776


Q ss_pred             HHHH
Q psy15946        178 ERLN  181 (251)
Q Consensus       178 ~~l~  181 (251)
                      .+..
T Consensus        76 ~~yL   79 (219)
T 1gsu_A           76 LRYI   79 (219)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=92.09  E-value=0.44  Score=35.56  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----c--CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----H--LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~--~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      |+.|+.+|      |++|..+...|++    +  .+.+..+|++.+.+    +.+..+  ...+|.+++
T Consensus        55 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~  111 (141)
T 3hxs_A           55 IVDFYADW------CGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE----LARDFG--IQSIPTIWF  111 (141)
T ss_dssp             EEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEE
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH----HHHHcC--CCCcCEEEE
Confidence            45566775      9999987776654    3  36677888877754    445555  778999765

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=92.04  E-value=0.27  Score=39.76  Aligned_cols=55  Identities=20%  Similarity=0.272  Sum_probs=38.6

Q ss_pred             eEEEEee----cCCCCCCCCchHHHHHHHHHHc-----------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYST----TMGIVRDTYHRCLKVKQILRTH-----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~----~~~~~~~~C~~C~~~k~~L~~~-----------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -||.|++    +|   +.+|+.|+.+.-.|++.           .+.|..+|++.+++    +.+.+  +..++|++++
T Consensus        40 vvV~F~A~~~~~~---~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~----la~~~--~I~siPtl~~  109 (178)
T 3ga4_A           40 NILYITMRGTNSN---GMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ----LVKDL--KLQNVPHLVV  109 (178)
T ss_dssp             EEEEEECCSBCTT---SCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH----HHHHT--TCCSSCEEEE
T ss_pred             EEEEEeCCCCCCC---CCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH----HHHHc--CCCCCCEEEE
Confidence            4777777    20   11399999998888752           35677888888776    44555  5788999864

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=92.01  E-value=0.072  Score=41.88  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHH------cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRT------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~------~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ...-|+.|.++|      |++|+.....|.+      .++.|..+|++.+++.   +...++.+...+|.+++
T Consensus        46 ~k~vlv~F~a~W------C~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~~~~Pt~~~  109 (164)
T 1sen_A           46 GLPLMVIIHKSW------CGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIPRILF  109 (164)
T ss_dssp             TCCEEEEEECTT------CHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSSEEEE
T ss_pred             CCeEEEEEECCC------CHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH---HHHHhcccCCcCCeEEE
Confidence            355788889998      9999999998876      3477888888766541   11223212356898853

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=91.98  E-value=0.74  Score=34.10  Aligned_cols=70  Identities=14%  Similarity=0.229  Sum_probs=39.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHH-------hcCCceeEEEcCCCHHHHHH---------------------HHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILR-------THLVKFDDKDVFMSRETQQE---------------------FKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~-------~~~v~~~e~dv~~~~~~~~e---------------------l~~~~g  155 (251)
                      |+.|..+|      |+.|......|.       ..++.+..++++.+.+..+.                     +.+..+
T Consensus        35 ll~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           35 ILFFWDSQ------CGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             EEEEECGG------GCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             EEEEECCC------CccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            44466665      999995554443       33577777777755443222                     333443


Q ss_pred             CCCCCCceEEE---CCeee---CChHHHHHHH
Q psy15946        156 TDVINVPQIFV---EGVHI---GDADAIERLN  181 (251)
Q Consensus       156 ~~~~~vP~vfi---~g~~i---GG~d~l~~l~  181 (251)
                        ...+|.+|+   +|+.+   -|.+++.++.
T Consensus       109 --i~~~P~~~lid~~G~i~~~~~g~~~~~~~l  138 (148)
T 3hcz_A          109 --IYATPVLYVLDKNKVIIAKRIGYENLDDFL  138 (148)
T ss_dssp             --CCSSCEEEEECTTCBEEEESCCGGGHHHHH
T ss_pred             --cCCCCEEEEECCCCcEEEecCCHHHHHHHH
Confidence              567899765   56543   2445555543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=91.95  E-value=1.1  Score=33.72  Aligned_cols=34  Identities=12%  Similarity=0.033  Sum_probs=26.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc----CCccceeec
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH----LVKFDDKDV   62 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~v~~~e~dv   62 (251)
                      ...|+.|..+|      |++|......|.+.    ++.+..+++
T Consensus        31 k~vll~f~~~~------C~~C~~~~~~l~~l~~~~~v~~v~v~~   68 (154)
T 3ia1_A           31 KPAVIVFWASW------CTVCKAEFPGLHRVAEETGVPFYVISR   68 (154)
T ss_dssp             SSEEEEEECTT------CHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEEEEEEccc------ChhHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            45788888887      99999977766653    677777777

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=91.86  E-value=0.71  Score=34.85  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-------cCCceeEEEcCCCHHH---------------------HHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRET---------------------QQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-------~~v~~~e~dv~~~~~~---------------------~~el~~~~g  155 (251)
                      |+.|..+|      |+.|......|.+       .++.+..++++.+.+.                     ..++.+..|
T Consensus        33 ll~F~a~~------C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           33 LVDFWFAG------CSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             EEEEECTT------CTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            45566665      9999975554433       3466667777655432                     345555665


Q ss_pred             CCCCCCceEE-E--CCeeeC
Q psy15946        156 TDVINVPQIF-V--EGVHIG  172 (251)
Q Consensus       156 ~~~~~vP~vf-i--~g~~iG  172 (251)
                        ...+|.+| |  +|+.+.
T Consensus       107 --v~~~P~~~lid~~G~i~~  124 (152)
T 2lrn_A          107 --IVGFPHIILVDPEGKIVA  124 (152)
T ss_dssp             --CCSSCEEEEECTTSEEEE
T ss_pred             --CCcCCeEEEECCCCeEEE
Confidence              67899965 4  566543

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=91.80  E-value=0.21  Score=40.55  Aligned_cols=69  Identities=16%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--------HH-----HHHHHHHHhCCCCCCCceEEECCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--------RE-----TQQEFKERLGTDVINVPQIFVEGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--------~~-----~~~el~~~~g~~~~~vP~vfi~g~~  170 (251)
                      +++|...      .+ +|.+++-+|+..|++|+.+.++..        .+     ...++.+..  +...+|.+..+|..
T Consensus         3 ~~Ly~~~------~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~n--P~g~vP~L~~~g~~   73 (225)
T 3lsz_A            3 LKIYGVY------RS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVN--PLGQIPCLEEEGLI   73 (225)
T ss_dssp             CEEESCS------SS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTC--TTCCSCEEEETTEE
T ss_pred             EEEEeCC------CC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhC--cCCCCCeEEECCEE
Confidence            5788877      37 999999999999999999888542        11     334555554  36799999999999


Q ss_pred             eCChHHHHHHH
Q psy15946        171 IGDADAIERLN  181 (251)
Q Consensus       171 iGG~d~l~~l~  181 (251)
                      |.+...+.+..
T Consensus        74 l~eS~aI~~yL   84 (225)
T 3lsz_A           74 LTESLAITLHI   84 (225)
T ss_dssp             EESHHHHHHHH
T ss_pred             EEcHHHHHHHH
Confidence            88877766643

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=91.80  E-value=0.068  Score=39.82  Aligned_cols=55  Identities=9%  Similarity=0.210  Sum_probs=39.9

Q ss_pred             CCCeEEEEeecCCCCCCCCc--------------hHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCC
Q psy15946         22 EAGKIVMYSTTMGIVRDTYH--------------RCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVI   81 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~--------------~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~   81 (251)
                      ...-++.|+++|      |+              +|+++...|++.      .+.+..+|++.+++    +.+.+  +..
T Consensus        21 ~k~vlv~F~a~w------C~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~----l~~~~--~v~   88 (123)
T 1oaz_A           21 DGAILVDFWAEW------CGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKY--GIR   88 (123)
T ss_dssp             SSEEEEEEECSS------CSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT----TGGGG--TCC
T ss_pred             CCeEEEEEECCC------CccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHc--CCC
Confidence            345678889998      99              999998888763      36667778877765    33444  466


Q ss_pred             CCCceee
Q psy15946         82 NVPQIFV   88 (251)
Q Consensus        82 ~vP~i~i   88 (251)
                      .+|.+++
T Consensus        89 ~~Pt~~~   95 (123)
T 1oaz_A           89 GIPTLLL   95 (123)
T ss_dssp             BSSEEEE
T ss_pred             ccCEEEE
Confidence            7899876

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=91.77  E-value=0.34  Score=39.13  Aligned_cols=72  Identities=18%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--H-HH-HHHHHHh--CCCCCCCceEEECCeeeCChHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--E-TQ-QEFKERL--GTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~-~~-~el~~~~--g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +++|+..      .++.|.+++-+|+..|++|+.+.++...  + .. +.+....  |.....+|.+..+|..|.+...+
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI   76 (218)
T 2c4j_A            3 MTLGYWN------IRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAI   76 (218)
T ss_dssp             EEEEEES------SSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             cEEEEeC------CCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHH
Confidence            5677766      4999999999999999999988876432  1 11 2222222  11245899998888888887766


Q ss_pred             HHHH
Q psy15946        178 ERLN  181 (251)
Q Consensus       178 ~~l~  181 (251)
                      .+..
T Consensus        77 ~~yL   80 (218)
T 2c4j_A           77 LRYI   80 (218)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=91.73  E-value=0.49  Score=35.51  Aligned_cols=47  Identities=4%  Similarity=-0.003  Sum_probs=31.7

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-------cCCccceeeccCCHHHHHHHHHH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKER   75 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-------~~v~~~e~dv~~d~~~~~el~~~   75 (251)
                      ...|+.|..+|      |++|......|.+       .++.+..++++.+.+....+.+.
T Consensus        29 k~vll~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~   82 (152)
T 3gl3_A           29 SVVYLDFWASW------CGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQ   82 (152)
T ss_dssp             SEEEEEEECTT------CTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHH
T ss_pred             CEEEEEEECCc------CHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHH
Confidence            34566688887      9999987766655       34666777777776655554444

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=91.72  E-value=0.45  Score=35.64  Aligned_cols=59  Identities=15%  Similarity=-0.001  Sum_probs=38.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh----cCCceeEEEcCCCH-----HHHHHHHHHhCCCCCCCceEEE--CCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFMSR-----ETQQEFKERLGTDVINVPQIFV--EGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~v~~~e~dv~~~~-----~~~~el~~~~g~~~~~vP~vfi--~g~~  170 (251)
                      ++.|.++|      |+.|..+...|++    +++.+..+|+..+.     +...++.+..+  ...+|.+++  +|+.
T Consensus        35 lv~F~a~w------C~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~--v~~~Pt~~~~~~G~~  104 (135)
T 3emx_A           35 ILAVYSKT------CPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAG--VEGTPTLVFYKEGRI  104 (135)
T ss_dssp             EEEEEETT------CHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCc------CHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcC--CceeCeEEEEcCCEE
Confidence            45566776      9999987776654    45777888884432     23445566665  778998544  6754

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=91.68  E-value=0.089  Score=34.05  Aligned_cols=27  Identities=30%  Similarity=0.653  Sum_probs=22.8

Q ss_pred             eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        211 LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       211 ~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      .+|+.|+|+-+..          ..+|+.|+-.|+++
T Consensus        10 ~~C~~C~GsG~~i----------~~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREE----------PEPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEET----------TEECTTTTTSSEEE
T ss_pred             ccCcCCcccccCC----------CCcCCCCCCcEEEE
Confidence            6899999998873          26899999999864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=91.65  E-value=0.19  Score=42.56  Aligned_cols=54  Identities=11%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-||.|+++|      |++|+.....|++.      .+.|..+|++.+++    +.+.+  +..++|++++
T Consensus        27 ~~v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~--~v~~~Pt~~~   86 (287)
T 3qou_A           27 TPVLFYFWSER------SQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM----IAAQF--GLRAIPTVYL   86 (287)
T ss_dssp             SCEEEEEECTT------CTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHH----HHHTT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHH----HHHHc--CCCCCCeEEE
Confidence            45688899998      99999887777652      27788888887765    44455  5678999865

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=90.90  E-value=0.033  Score=39.17  Aligned_cols=56  Identities=16%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |++|..+...|++..      +.+..+|++.+.+    +.+..+  ...+|.+++  +|+.+
T Consensus        23 ~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--v~~~Pt~~~~~~g~~~   86 (106)
T 2yj7_A           23 LVDFWAPW------CGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN----TAAQYG--IRSIPTLLLFKNGQVV   86 (106)
Confidence            56666665      999998887776543      4444555554433    344444  567899876  77654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=91.59  E-value=0.16  Score=37.38  Aligned_cols=60  Identities=18%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             eeeeeeecccccCCCcchHHHHHHH---H----hcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE---CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQIL---R----THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV---EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL---~----~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi---~g~~i  171 (251)
                      ++.|..+|      |+.|..+...|   .    ..+..+..+.++.+.....++.+..+  ...+|.+++   +|+.+
T Consensus        31 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~--v~~~Pt~~~~d~~G~~~  100 (130)
T 2kuc_A           31 FVDCFTTW------CGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYG--VHAYPTLLFINSSGEVV  100 (130)
T ss_dssp             EEEECCTT------CTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTT--CCSSCEEEEECTTSCEE
T ss_pred             EEEEECCC------CccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcC--CCCCCEEEEECCCCcEE
Confidence            45566665      99999887665   1    11223344444333223345666665  778999765   57643

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=91.50  E-value=0.27  Score=36.26  Aligned_cols=52  Identities=13%  Similarity=0.101  Sum_probs=37.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc-----------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV  166 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi  166 (251)
                      -++.|+++|      |+.|..+...|++.           .+.+..+|++.+.+    +.+..+  ...+|.+++
T Consensus        36 vlv~F~a~w------C~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--v~~~Pt~~~   98 (127)
T 3h79_A           36 VFVLYYVPW------SRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD----VIERMR--VSGFPTMRY   98 (127)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH----HHHHTT--CCSSSEEEE
T ss_pred             EEEEEECCc------cHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh----HHHhcC--CccCCEEEE
Confidence            356677787      99999988888764           36677888877654    445554  778998643

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=91.40  E-value=0.11  Score=42.22  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--------HH-----HHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--------RE-----TQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--------~~-----~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +++|+.+.      + +|.+++-+|+.+|++|+.+.|+..        .+     ...+++++.  ....+|++..+|..
T Consensus         3 ~~Ly~~~~------s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~n--P~g~vP~L~~~g~~   73 (225)
T 3lsz_A            3 LKIYGVYR------S-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVN--PLGQIPCLEEEGLI   73 (225)
T ss_dssp             CEEESCSS------S-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTC--TTCCSCEEEETTEE
T ss_pred             EEEEeCCC------C-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhC--cCCCCCeEEECCEE
Confidence            68999995      8 999999999999999998887542        01     234555554  45679999776655


Q ss_pred             c
Q psy15946         93 I   93 (251)
Q Consensus        93 ~   93 (251)
                      +
T Consensus        74 l   74 (225)
T 3lsz_A           74 L   74 (225)
T ss_dssp             E
T ss_pred             E
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	2e-21
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	1e-14
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	9e-13
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	9e-06
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-11
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-05
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-07
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-06
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	5e-07
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	2e-06
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	2e-05
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	4e-05
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	7e-04
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	6e-05
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-04
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	7e-04

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (207), Expect = 2e-21
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
             + +YST++   R+   +  +V +IL    +++   D+      + E +   G      
Sbjct: 2   SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61

Query: 162 PQIFVEGVHIGDADAIERLNESGELRRILK 191
           PQI     + GD +      E   L+  LK
Sbjct: 62  PQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 14/75 (18%), Positives = 31/75 (41%)

Query: 24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 83
            + +YST++   R+   +  +V +IL    +++   D+      + E +   G      
Sbjct: 2  SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61

Query: 84 PQIFVEGVHIGTWQE 98
          PQI     + G ++ 
Sbjct: 62 PQIVNGNHYCGDYEL 76

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.8 bits (147), Expect = 9e-13
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 103 KIVMYSTTMGIVRDTYHR-CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 161
            ++++    G  ++       ++ +IL +  V+++  D+    E +Q  K          
Sbjct: 16  SVMLFM--KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTY-- 71

Query: 162 PQIFVEGVHIGDADAIERLNESGELRRILKPYKSPDA 198
           PQ++V G  +G  D ++ L ++GEL  ILK    P +
Sbjct: 72  PQLYVRGDLVGGLDIVKELKDNGELLPILKGESGPSS 108

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 9e-06
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 25 KIVMYSTTMGIVRDTYHR-CLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINV 83
           ++++    G  ++       ++ +IL +  V+++  D+    E +Q  K          
Sbjct: 16 SVMLFM--KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTY-- 71

Query: 84 PQIFVEGVHIG 94
          PQ++V G  +G
Sbjct: 72 PQLYVRGDLVG 82

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            + +Y+            C + K +L +  V F +  +  +   ++E  +R G     VP
Sbjct: 2   NVEIYTKETCPY------CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVP 53

Query: 163 QIFVEGVHIGDADAIERLNESGELRRILK 191
           QIF++  HIG  D +  L+  G L  +LK
Sbjct: 54  QIFIDAQHIGGYDDLYALDARGGLDPLLK 82

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
           + +Y+            C + K +L +  V F +  +  +   ++E  +R G     VP
Sbjct: 2  NVEIYTKETCPY------CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVP 53

Query: 85 QIFVEGVHIGTWQE 98
          QIF++  HIG + +
Sbjct: 54 QIFIDAQHIGGYDD 67

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDD-----KDVFMSRETQQEFKERLGTD 157
           + V++  +          C++ K +      + DD      D+     T+++ +++ G  
Sbjct: 2   QTVIFGRSGCPY------CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55

Query: 158 VINVPQIFVEGVHIGDADAIERLNE 182
           V  VPQIFV+  HIG         +
Sbjct: 56  VETVPQIFVDQQHIGGYTDFAAWVK 80

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDD-----KDVFMSRETQQEFKERLGTD 79
          + V++  +          C++ K +      + DD      D+     T+++ +++ G  
Sbjct: 2  QTVIFGRSGCPY------CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKP 55

Query: 80 VINVPQIFVEGVHIGTWQE 98
          V  VPQIFV+  HIG + +
Sbjct: 56 VETVPQIFVDQQHIGGYTD 74

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.1 bits (106), Expect = 5e-07
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG----TD 157
           GK+V++         T   C K +++L     K    +      T    + +      T 
Sbjct: 12  GKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 158 VINVPQIFVEGVHIGDADAIERLNESGELRRILK 191
              VP++F+    IG    +E +++ GEL   L+
Sbjct: 66  ARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            I +++            C K KQ+L    + F++  +     T    +   G     VP
Sbjct: 6   SISIFTKPGCPF------CAKAKQLLHDKGLSFEEIILGHD-ATIVSVRAVSG--RTTVP 56

Query: 163 QIFVEGVHIGDADAIER 179
           Q+F+ G HIG +D +E+
Sbjct: 57  QVFIGGKHIGGSDDLEK 73

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
           I +++            C K KQ+L    + F++  +     T    +   G     VP
Sbjct: 6  SISIFTKPGCPF------CAKAKQLLHDKGLSFEEIILGHD-ATIVSVRAVSG--RTTVP 56

Query: 85 QIFVEGVHIGTWQE 98
          Q+F+ G HIG   +
Sbjct: 57 QVFIGGKHIGGSDD 70

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
            I +Y+           +C   K+ L    + ++  D+ +  E +           +  P
Sbjct: 2   SITLYTKPAC------VQCTATKKALDRAGLAYNTVDISLDDEARDYVMA---LGYVQAP 52

Query: 163 QIFVEGVHIG--DADAIERL 180
            + V+G H      + I++L
Sbjct: 53  VVEVDGEHWSGFRPERIKQL 72

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 84
           I +Y+           +C   K+ L    + ++  D+ +  E +           +  P
Sbjct: 2  SITLYTKPAC------VQCTATKKALDRAGLAYNTVDISLDDEARDYVMA---LGYVQAP 52

Query: 85 QIFVEGVHIG 94
           + V+G H  
Sbjct: 53 VVEVDGEHWS 62

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (88), Expect = 6e-05
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVP 162
           +I +Y+       +   +C   K+ +      F+  +V    E  +  +         +P
Sbjct: 2   RITIYTR------NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA---QGFRQLP 52

Query: 163 QIFVEGVHIG--DADAIERLNES 183
            +    +       D I RL+ +
Sbjct: 53  VVIAGDLSWSGFRPDMINRLHPA 75

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 121 CLKVKQILRTHLVKF-----DDKDVFMSRETQQEFKERLG---TDVINVPQIFV-EGVHI 171
           C   K++L      F       +      E   E   +LG      + +PQ+F  +G HI
Sbjct: 17  CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76

Query: 172 GDADAIERL 180
           G  D +   
Sbjct: 77  GGFDQLREY 85

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 43 CLKVKQILRTHLVKF-----DDKDVFMSRETQQEFKERLG---TDVINVPQIFV-EGVHI 93
          C   K++L      F       +      E   E   +LG      + +PQ+F  +G HI
Sbjct: 17 CDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHI 76

Query: 94 GTWQE 98
          G + +
Sbjct: 77 GGFDQ 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.87
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.87
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.82
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.7
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.69
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.67
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.64
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.64
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.63
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.63
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.62
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.58
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.58
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.56
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.55
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.37
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.96
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.72
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.68
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.37
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.11
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.09
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.99
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	97.94
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	97.76
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	97.72
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	97.72
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	97.62
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	97.61
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	97.6
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	97.59
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	97.58
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	97.52
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.51
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.49
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	97.47
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.45
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	97.43
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	97.42
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	97.4
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	97.35
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	97.23
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	97.19
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	97.16
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.1
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	97.0
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	96.99
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	96.97
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	96.97
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	96.95
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.93
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	96.88
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	96.87
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	96.85
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	96.83
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	96.81
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	96.81
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.72
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	96.62
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	96.6
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	96.59
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.55
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	96.55
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	96.46
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.42
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	96.35
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	96.33
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.16
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	96.14
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	96.09
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.09
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.03
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	95.85
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	95.8
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	95.76
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.69
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	95.64
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.63
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.5
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	95.47
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.47
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.37
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.16
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	95.13
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.02
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.02
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	95.02
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	95.01
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	94.62
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	94.6
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	94.59
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	94.59
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.56
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	94.52
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	94.25
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	94.2
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	94.18
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.15
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.09
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	94.08
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	94.01
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	93.9
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	93.81
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	93.72
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	93.72
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	93.61
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	93.6
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	93.6
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	93.58
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	93.58
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	93.55
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	93.27
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	92.83
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	92.78
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	92.78
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	92.52
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	92.48
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	92.12
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	92.1
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	91.93
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	91.85
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	91.18
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	91.15
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	90.76
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	90.73
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	90.6
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	90.47
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	90.32
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	90.18
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	89.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	89.71
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	89.68
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	89.6
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	89.53
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	89.05
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	88.7
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	88.64
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	88.28
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	88.25
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	88.01
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	87.79
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	87.41
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	87.25
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	87.18
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	87.03
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	86.22
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	85.86
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	85.71
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	85.67
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	85.19
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	84.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	84.34
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	83.93
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	82.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	82.88
d1oe8a2	81	Class alpha GST {Blood fluke (Schistosoma haematob	82.18
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	82.11
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	82.03
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	81.7
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	81.67
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	81.05
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	81.04
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	80.76
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	80.41

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8.1e-24  Score=155.54  Aligned_cols=92  Identities=21%  Similarity=0.253  Sum_probs=86.9

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      |..|+||+||+.++|.+.++|.+++++|++++|+|+++||+.|++.++++.+++|.+..++|||||||+||||+|++.+|
T Consensus         1 m~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~~   80 (93)
T d1t1va_           1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEA   80 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHH
T ss_pred             CCCEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHHHHHH
Confidence            35699999999999999999999999999999999999999999999999999875567999999999999999999999


Q ss_pred             HHcCChhhhhcc
Q psy15946        181 NESGELRRILKP  192 (251)
Q Consensus       181 ~e~G~L~~~L~~  192 (251)
                      +++|+|.++|+.
T Consensus        81 ~e~g~L~~~lk~   92 (93)
T d1t1va_          81 VEQDTLQEFLKL   92 (93)
T ss_dssp             HHTTCHHHHTTC
T ss_pred             HHCCCHHHHhcc
Confidence            999999999975

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.87  E-value=8.3e-23  Score=146.48  Aligned_cols=81  Identities=28%  Similarity=0.509  Sum_probs=77.8

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      .|+||+++.      ||+|.+++++|++++|+|+++|++.+++.++++.+.+|  ..++|||||+|++|||++++.+|++
T Consensus         2 ~I~iys~~~------Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g--~~tvP~i~i~~~~IGG~~el~~l~~   73 (82)
T d1fova_           2 NVEIYTKET------CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVPQIFIDAQHIGGYDDLYALDA   73 (82)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHS--SCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             cEEEEeCCC------CHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhC--CCCCCeEEECCEEEecHHHHHHHHH
Confidence            589999994      99999999999999999999999999999999999997  8899999999999999999999999


Q ss_pred             cCChhhhhc
Q psy15946        183 SGELRRILK  191 (251)
Q Consensus       183 ~G~L~~~L~  191 (251)
                      +|+|+++|+
T Consensus        74 ~g~L~~lLk   82 (82)
T d1fova_          74 RGGLDPLLK   82 (82)
T ss_dssp             TTCSHHHHC
T ss_pred             cCCHHHHhC
Confidence            999999985

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.3e-22  Score=151.91  Aligned_cols=95  Identities=22%  Similarity=0.362  Sum_probs=84.9

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      ...++||||++.. --.+.|++|.+++++|++++++|.++|++.+++.+++|.+.++  +.|+|||||+|++|||+|+|.
T Consensus        12 i~~~~VvvF~Kgt-~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~--~~TvPqIFi~g~~IGG~ddl~   88 (109)
T d1wika_          12 TNKASVMLFMKGN-KQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN--WPTYPQLYVRGDLVGGLDIVK   88 (109)
T ss_dssp             HTTSSEEEEESST-TTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS--CCSSCEEECSSSEEECHHHHH
T ss_pred             HhcCCEEEEeCCC-CCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcC--CCCCCeEEECCEEEcCHHHHH
Confidence            3577899999852 1123499999999999999999999999999999999999997  899999999999999999999


Q ss_pred             HHHHcCChhhhhccCCCC
Q psy15946        179 RLNESGELRRILKPYKSP  196 (251)
Q Consensus       179 ~l~e~G~L~~~L~~~~~~  196 (251)
                      +|+++|+|.++|+.....
T Consensus        89 ~l~~~G~L~~lL~~~~~~  106 (109)
T d1wika_          89 ELKDNGELLPILKGESGP  106 (109)
T ss_dssp             HHHHHTCSHHHHHTCCSC
T ss_pred             HHHHCCCHHHHHHhcCCC
Confidence            999999999999886543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=4.9e-21  Score=143.50  Aligned_cols=88  Identities=24%  Similarity=0.394  Sum_probs=75.8

Q ss_pred             ccchheeeeeeecccccCCCcchHHHHHHHHhcCCc-----eeEEEcCCCHH-HHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946         99 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK-----FDDKDVFMSRE-TQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus        99 ~~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~-----~~e~dv~~~~~-~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      ...++|+||++++      ||+|.+++++|++++++     |.++|+..|.. .++.+.+.+|  ++|+|||||+|++||
T Consensus         9 i~~~~Vviysk~~------Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g--~~tvPqIfi~g~~IG   80 (105)
T d1ktea_           9 IQPGKVVVFIKPT------CPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG--ARTVPRVFIGKECIG   80 (105)
T ss_dssp             CCTTCEEEEECSS------CHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS--CCCSCEEEETTEEEE
T ss_pred             hccCCEEEEECCC------CchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccC--CCcCcEEEECCEEEe
Confidence            4567899999995      99999999999999987     55666777655 4555777776  899999999999999


Q ss_pred             ChHHHHHHHHcCChhhhhccCC
Q psy15946        173 DADAIERLNESGELRRILKPYK  194 (251)
Q Consensus       173 G~d~l~~l~e~G~L~~~L~~~~  194 (251)
                      |+++|.+|+++|+|.++|+.++
T Consensus        81 G~~el~~l~~~G~L~~~L~~~G  102 (105)
T d1ktea_          81 GCTDLESMHKRGELLTRLQQVG  102 (105)
T ss_dssp             SHHHHHHHHHHTHHHHHHHHHT
T ss_pred             cHHHHHHHHHCCCHHHHHHHcC
Confidence            9999999999999999998754

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=9.6e-18  Score=117.36  Aligned_cols=70  Identities=26%  Similarity=0.439  Sum_probs=62.4

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      +.+|+|||++.      |++|.+++++|++++++|+++|++.+.. ++++.+.+|  ..++|+|||+|++|||+++|.+
T Consensus         4 ~~~I~iYs~~~------C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~~--~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTKPG------CPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSG--RTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEECSS------CHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTC--CSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEECCC------CHHHHHHHHHHHHcCCCeEEEEccCcHH-HHHHHHHhC--CccCCEEEECCEEEEChHHHhh
Confidence            45799999994      9999999999999999999999988765 456777776  8999999999999999999875

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.5e-18  Score=122.86  Aligned_cols=75  Identities=21%  Similarity=0.422  Sum_probs=66.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcC-----CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAI  177 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~-----v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l  177 (251)
                      +|+||+++      .||+|.++|++|++++     ++|+++|++.+++.++++.+..+....|+|||||||++|||+++|
T Consensus         2 kvviysk~------~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el   75 (85)
T d1egoa_           2 QTVIFGRS------GCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             EEEEECCT------TSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             EEEEEeCC------CCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHH
Confidence            58999999      4999999999999965     678888888778888999999874457999999999999999999


Q ss_pred             HHHHHc
Q psy15946        178 ERLNES  183 (251)
Q Consensus       178 ~~l~e~  183 (251)
                      .++.+.
T Consensus        76 ~~~~~~   81 (85)
T d1egoa_          76 AAWVKE   81 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999774

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.67  E-value=3.1e-17  Score=116.93  Aligned_cols=66  Identities=24%  Similarity=0.491  Sum_probs=62.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      .|+|||+++      ||+|.+||++|++++|+|+++||+.+++.++++.+..  |..++|+|||+|+++||+++
T Consensus         2 ~I~iys~~~------Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~--g~~tvP~i~i~~~~IGG~~e   67 (82)
T d1fova_           2 NVEIYTKET------CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS--GRTTVPQIFIDAQHIGGYDD   67 (82)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHH--SSCCSCEEEETTEEEESHHH
T ss_pred             cEEEEeCCC------CHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHh--CCCCCCeEEECCEEEecHHH
Confidence            599999997      9999999999999999999999999999999999987  68899999999999999874

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.64  E-value=9.2e-17  Score=112.16  Aligned_cols=68  Identities=18%  Similarity=0.375  Sum_probs=61.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEA  101 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~  101 (251)
                      +|+|||+++      ||+|.+||++|++++++|+++||+.+++..++++. +  |..++|+|+++|++++||++...
T Consensus         2 ~v~iYt~~~------C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~-~--g~~tvP~i~i~g~~igGf~~d~l   69 (74)
T d1r7ha_           2 SITLYTKPA------CVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-L--GYVQAPVVEVDGEHWSGFRPERI   69 (74)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-T--TCBCCCEEEETTEEEESCCHHHH
T ss_pred             EEEEEeCCC------ChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHH-h--CCCCcCEEEECCEEEeCCCHhHH
Confidence            599999997      99999999999999999999999999998888765 4  57899999999999999975543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.64  E-value=2.1e-16  Score=110.23  Aligned_cols=69  Identities=20%  Similarity=0.393  Sum_probs=61.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChH--HHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDAD--AIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d--~l~~l  180 (251)
                      +|+||+++      +|++|.+++++|+++|++|+++|++.+++..+++++. |  ..++|+|||||++|||++  +|.+|
T Consensus         2 ~v~iYt~~------~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~-g--~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           2 SITLYTKP------ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-G--YVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT-T--CBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             EEEEEeCC------CChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHh-C--CCCcCEEEECCEEEeCCCHhHHHHh
Confidence            48999999      5999999999999999999999999999998888654 5  789999999999999984  55554

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.6e-16  Score=111.59  Aligned_cols=69  Identities=12%  Similarity=0.248  Sum_probs=62.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccccch
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEKEAG  102 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~~~~  102 (251)
                      +|+|||+++      |++|.+|+++|++++++|+++||+.+++..++++. +  |..++|+|+++|++++||++...+
T Consensus         2 ki~iYs~~~------C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~--g~~tvP~i~i~~~~i~Gf~~d~i~   70 (76)
T d1h75a_           2 RITIYTRND------CVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-Q--GFRQLPVVIAGDLSWSGFRPDMIN   70 (76)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-T--TCCSSCEEEETTEEEESCCHHHHG
T ss_pred             EEEEEeCCC------CccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-c--CCCCCCEEEECCEEEECCCHHHHH
Confidence            599999997      99999999999999999999999999998888865 4  688999999999999999765543

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.1e-16  Score=116.82  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=70.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      |..|+||+++++|+|.+=++|.+++.+|++++|+|+++||+.|++.++++.++.|.+..++|+|||+|+++||+++.
T Consensus         1 m~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del   77 (93)
T d1t1va_           1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF   77 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred             CCCEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHHH
Confidence            56799999999888888899999999999999999999999999999999999875667899999999999998854

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.63  E-value=1.4e-16  Score=111.32  Aligned_cols=68  Identities=22%  Similarity=0.334  Sum_probs=60.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccccc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQEK   99 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~~   99 (251)
                      +.+|+|||+++      ||+|.+||++|++++++|+++|++.+.. ++++.+..  +..++|+|+|+|+++||+++.
T Consensus         4 ~~~I~iYs~~~------C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~--~~~tvP~i~i~g~~IGG~~el   71 (74)
T d1nm3a1           4 QESISIFTKPG------CPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVS--GRTTVPQVFIGGKHIGGSDDL   71 (74)
T ss_dssp             CCCEEEEECSS------CHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHT--CCSSSCEEEETTEEEESHHHH
T ss_pred             cCcEEEEECCC------CHHHHHHHHHHHHcCCCeEEEEccCcHH-HHHHHHHh--CCccCCEEEECCEEEEChHHH
Confidence            56899999997      9999999999999999999999998876 45666665  688999999999999998753

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.6e-16  Score=110.50  Aligned_cols=70  Identities=19%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCCh--HHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDA--DAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~--d~l~~l  180 (251)
                      +|+||+++.      |++|.+++++|+++||+|+++|++.+++..++++. .|  ..++|+|||+|++|||+  |.|.+|
T Consensus         2 ki~iYs~~~------C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g--~~tvP~i~i~~~~i~Gf~~d~i~~L   72 (76)
T d1h75a_           2 RITIYTRND------CVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG--FRQLPVVIAGDLSWSGFRPDMINRL   72 (76)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TT--CCSSCEEEETTEEEESCCHHHHGGG
T ss_pred             EEEEEeCCC------CccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cC--CCCCCEEEECCEEEECCCHHHHHHH
Confidence            489999995      99999999999999999999999999999888865 45  78999999999999997  555544


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      +
T Consensus        73 ~   73 (76)
T d1h75a_          73 H   73 (76)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.58  E-value=1.8e-15  Score=109.01  Aligned_cols=76  Identities=22%  Similarity=0.383  Sum_probs=61.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-----CHHHHHHHHHHhC---CCCCCCceEEE-CCeeeCCh
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-----SRETQQEFKERLG---TDVINVPQIFV-EGVHIGDA  174 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-----~~~~~~el~~~~g---~~~~~vP~vfi-~g~~iGG~  174 (251)
                      +.||+.+.  -...|++|.+|+++|++++++|+++++..     +...++++.+.++   .++.|+||||| ||++|||+
T Consensus         2 ~~Iy~~~~--~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~   79 (87)
T d1abaa_           2 FKVYGYDS--NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             EEEEECCT--TTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             EEEEEeCC--CCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECH
Confidence            45787662  11349999999999999999999999854     4566777777765   34689999999 59999999


Q ss_pred             HHHHHHH
Q psy15946        175 DAIERLN  181 (251)
Q Consensus       175 d~l~~l~  181 (251)
                      ++|+++.
T Consensus        80 del~e~~   86 (87)
T d1abaa_          80 DQLREYF   86 (87)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998875

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.4e-15  Score=114.05  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=65.0

Q ss_pred             CCCeEEEEee-----cCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccc
Q psy15946         22 EAGKIVMYST-----TMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTW   96 (251)
Q Consensus        22 ~~~~vvvyt~-----~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~   96 (251)
                      +.++||||++     |.      ||||.+||++|++++++|+++|++.+++.++++.+.+  ++.++|+|||+|+++||+
T Consensus        13 ~~~~VvvF~Kgt~~~p~------Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t--~~~TvPqIFi~g~~IGG~   84 (109)
T d1wika_          13 NKASVMLFMKGNKQEAK------CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS--NWPTYPQLYVRGDLVGGL   84 (109)
T ss_dssp             TTSSEEEEESSTTTCCC------SSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH--SCCSSCEEECSSSEEECH
T ss_pred             hcCCEEEEeCCCCCCCC------ChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhc--CCCCCCeEEECCEEEcCH
Confidence            6789999998     54      9999999999999999999999999999999999988  689999999999999998


Q ss_pred             ccc
Q psy15946         97 QEK   99 (251)
Q Consensus        97 ~~~   99 (251)
                      ++.
T Consensus        85 ddl   87 (109)
T d1wika_          85 DIV   87 (109)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=1.2e-15  Score=113.57  Aligned_cols=71  Identities=21%  Similarity=0.367  Sum_probs=58.9

Q ss_pred             cCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCc-----cceeeccCCHHHHHHH-HHHhCCCCCCCCceeeeccccc
Q psy15946         21 KEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVK-----FDDKDVFMSRETQQEF-KERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        21 ~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~-----~~e~dv~~d~~~~~el-~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      ..+++|+|||++|      ||||.+||++|++++++     |.++|+..+....+++ .+..  ++.++|+|||+|+++|
T Consensus         9 i~~~~Vviysk~~------Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~--g~~tvPqIfi~g~~IG   80 (105)
T d1ktea_           9 IQPGKVVVFIKPT------CPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT--GARTVPRVFIGKECIG   80 (105)
T ss_dssp             CCTTCEEEEECSS------CHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHH--SCCCSCEEEETTEEEE
T ss_pred             hccCCEEEEECCC------CchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhcc--CCCcCcEEEECCEEEe
Confidence            3467899999997      99999999999999976     5667777777666654 5555  6789999999999999


Q ss_pred             ccccc
Q psy15946         95 TWQEK   99 (251)
Q Consensus        95 G~~~~   99 (251)
                      |+++.
T Consensus        81 G~~el   85 (105)
T d1ktea_          81 GCTDL   85 (105)
T ss_dssp             SHHHH
T ss_pred             cHHHH
Confidence            98864

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.6e-16  Score=111.54  Aligned_cols=68  Identities=24%  Similarity=0.498  Sum_probs=60.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcC-----CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL-----VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQE   98 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~-----v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~~   98 (251)
                      +|||||+++      ||+|.+||++|++++     ++|+++|++.+++.++++.+..+.+..++|+|||+|+++||+++
T Consensus         2 kvviysk~~------Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~e   74 (85)
T d1egoa_           2 QTVIFGRSG------CPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTD   74 (85)
T ss_dssp             EEEEECCTT------STHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHH
T ss_pred             EEEEEeCCC------CHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHH
Confidence            799999997      999999999999965     67888888888888899998886556789999999999999875

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.37  E-value=3.9e-13  Score=96.47  Aligned_cols=72  Identities=22%  Similarity=0.405  Sum_probs=57.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC-----CHHHHHHHHHHhC---CCCCCCCceee-eccccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-----SRETQQEFKERLG---TDVINVPQIFV-EGVHIGTW   96 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~-----d~~~~~el~~~~g---~g~~~vP~i~i-~g~~~gG~   96 (251)
                      +.||+.+.  ..-.||+|.+||++|++++++|++++++.     +...++++.+.++   .++.++||||| +|++|||+
T Consensus         2 ~~Iy~~~~--~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~   79 (87)
T d1abaa_           2 FKVYGYDS--NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             EEEEECCT--TTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             EEEEEeCC--CCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECH
Confidence            67898772  11239999999999999999999999865     3556777777664   35789999999 58999999


Q ss_pred             ccc
Q psy15946         97 QEK   99 (251)
Q Consensus        97 ~~~   99 (251)
                      ++.
T Consensus        80 del   82 (87)
T d1abaa_          80 DQL   82 (87)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.5e-10  Score=83.45  Aligned_cols=70  Identities=13%  Similarity=0.285  Sum_probs=58.5

Q ss_pred             cccccccCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         15 PMTWQEKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        15 ~~~~~~~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +.+....+|+.|++|+++|      |++|++++.+|+++..+|...++..|.+..++|.+.++  . .+|+++|+|+.+
T Consensus         8 ~~~~~~~~~p~i~lft~~~------C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~--~-~VPvl~idg~~~   77 (100)
T d1wjka_           8 NLSASNRALPVLTLFTKAP------CPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK--F-DIPVFHLNGQFL   77 (100)
T ss_dssp             CCCCSCCCCCEEEEEECSS------CHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS--S-SCSEEEESSSEE
T ss_pred             CchhcCCCCCEEEEEECCC------CCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhc--c-cCCceeecCceE
Confidence            3444556789999999998      99999999999999999988888777777788988874  3 399999988653

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2.8e-09  Score=77.70  Aligned_cols=79  Identities=14%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee--CChHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI--GDADAI  177 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i--GG~d~l  177 (251)
                      .+..|++|++.+      |+.|.+++.+|+++..+|..+++..|.+...+|.+..+  . .+|+|||+|+.+  |..|+ 
T Consensus        15 ~~p~i~lft~~~------C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~--~-~VPvl~idg~~~~~g~~d~-   84 (100)
T d1wjka_          15 ALPVLTLFTKAP------CPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK--F-DIPVFHLNGQFLMMHRVNT-   84 (100)
T ss_dssp             CCCEEEEEECSS------CHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS--S-SCSEEEESSSEEEESSCCH-
T ss_pred             CCCEEEEEECCC------CCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhc--c-cCCceeecCceEEeCCCCH-
Confidence            466799999996      99999999999999999988888777777788999986  3 499999999763  44432 


Q ss_pred             HHHHHcCChhhhhccCC
Q psy15946        178 ERLNESGELRRILKPYK  194 (251)
Q Consensus       178 ~~l~e~G~L~~~L~~~~  194 (251)
                            .+|++.|+++.
T Consensus        85 ------~~L~~~L~~l~   95 (100)
T d1wjka_          85 ------SKLEKQLRKLS   95 (100)
T ss_dssp             ------HHHHHHHHSSS
T ss_pred             ------HHHHHHHHHHh
Confidence                  24555555543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.68  E-value=8.6e-09  Score=71.23  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=45.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHH-cCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRT-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGT   95 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~-~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG   95 (251)
                      |++||+++      |+.|.+|+++|.+ +++.|+++||+.|+++.    +..|   ..+|++.+++....+
T Consensus         2 ltLyt~~~------C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l~----~~y~---~~IPVl~~~~~~~l~   59 (75)
T d1ttza_           2 LTLYQRDD------CHLCDQAVEALAQARAGAFFSVFIDDDAALE----SAYG---LRVPVLRDPMGRELD   59 (75)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHTTCCCEEEEECTTCHHHH----HHHT---TTCSEEECTTCCEEE
T ss_pred             EEEECCCC------ccHHHHHHHHHHhccCCcEEEEEccCCHHHH----HHhC---CeeeEEEECCeeEEc
Confidence            89999997      9999999998766 67999999999998744    4443   348999988755544

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.37  E-value=8.1e-07  Score=60.97  Aligned_cols=65  Identities=15%  Similarity=0.185  Sum_probs=49.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe-eeC---ChHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV-HIG---DADAIE  178 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~-~iG---G~d~l~  178 (251)
                      |++||++      .|+.|..++++|.+ .++.++++||+.|+    +|.++.|   ..+|.|.++|. ..+   +.++|.
T Consensus         2 ltLyt~~------~C~LCe~A~~~l~~~~~~~~~~vdI~~d~----~l~~~y~---~~IPVl~~~~~~~l~w~fd~~~l~   68 (75)
T d1ttza_           2 LTLYQRD------DCHLCDQAVEALAQARAGAFFSVFIDDDA----ALESAYG---LRVPVLRDPMGRELDWPFDAPRLR   68 (75)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHTTCCCEEEEECTTCH----HHHHHHT---TTCSEEECTTCCEEESCCCHHHHH
T ss_pred             EEEECCC------CccHHHHHHHHHHhccCCcEEEEEccCCH----HHHHHhC---CeeeEEEECCeeEEcCccCHHHHH
Confidence            7899999      59999999997755 68999999999886    4666765   45899999764 444   333444


Q ss_pred             HHH
Q psy15946        179 RLN  181 (251)
Q Consensus       179 ~l~  181 (251)
                      ++.
T Consensus        69 ~~L   71 (75)
T d1ttza_          69 AWL   71 (75)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.11  E-value=5.4e-06  Score=59.06  Aligned_cols=58  Identities=26%  Similarity=0.340  Sum_probs=45.5

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      .|++|+++|      |++|..++.+|+..     .|.+..+|++.+++    +.+..|  ..++|.+|+||+.++
T Consensus        18 ~i~~F~s~~------C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~----l~~~~~--I~~vPt~~~ng~~~~   80 (96)
T d1hyua4          18 EFETYYSLS------CHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERN--VMGVPAVFVNGKEFG   80 (96)
T ss_dssp             EEEEEECTT------CSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTT--CCSSSEEEETTEEEE
T ss_pred             EEEEEECCC------CcchHHHHHHHHHHHHhCCceEEEEEecccchH----HHhhcc--cccccEEEECCEEEE
Confidence            467888886      99999999988755     46788888887754    444555  789999999999764

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=4.5e-06  Score=56.91  Aligned_cols=67  Identities=13%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLN  181 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~  181 (251)
                      .+|+..      +||+|.+++.+|..+|++|+.+++..+  ..+++.++.+  ..+||.+.. +|+.+.+...+.+..
T Consensus         2 kLY~~~------~cP~~~rvr~~l~~kgi~~e~~~~~~~--~~~~~~~~~p--~~~VP~L~~~dg~~i~eS~~I~~yL   69 (75)
T d1g7oa2           2 KLYIYD------HCPYCLKARMIFGLKNIPVELHVLLND--DAETPTRMVG--QKQVPILQKDDSRYMPESMDIVHYV   69 (75)
T ss_dssp             EEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTT--TTHHHHHHHS--SSCCCEEEETTTEEEECHHHHHHHH
T ss_pred             EEEccC------CCCchHHHHHHHHHhCCCccccccccc--chHHHHHhCC--CCceEEEEEcCCCEEecHHHHHHHH
Confidence            378877      599999999999999999999988655  3467777876  789999987 679999888777643

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.99  E-value=5.8e-06  Score=58.90  Aligned_cols=58  Identities=24%  Similarity=0.304  Sum_probs=46.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ..|++|+++|      ||+|+.++.+|++.     .|.+..+|++.+++.    .+.+  +..++|.++++|+.+
T Consensus        17 ~~i~~F~s~~------C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l----~~~~--~I~~vPt~~~ng~~~   79 (96)
T d1hyua4          17 FEFETYYSLS------CHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNE----ITER--NVMGVPAVFVNGKEF   79 (96)
T ss_dssp             EEEEEEECTT------CSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHH----HHHT--TCCSSSEEEETTEEE
T ss_pred             eEEEEEECCC------CcchHHHHHHHHHHHHhCCceEEEEEecccchHH----Hhhc--ccccccEEEECCEEE
Confidence            4688999998      99999999998864     467888888888764    3444  567899999988754

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=6.8e-06  Score=55.99  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .||+...      ||+|.+|+.+|..++++|+.+++..+.  .+++.++.  +..+||++..+
T Consensus         2 kLY~~~~------cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~--p~~~VP~L~~~   54 (75)
T d1g7oa2           2 KLYIYDH------CPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMV--GQKQVPILQKD   54 (75)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHH--SSSCCCEEEET
T ss_pred             EEEccCC------CCchHHHHHHHHHhCCCcccccccccc--hHHHHHhC--CCCceEEEEEc
Confidence            5899995      999999999999999999998886553  36677776  57899999864

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2e-05  Score=55.10  Aligned_cols=66  Identities=9%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             eEEEEeecCCC--CCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGI--VRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~--~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .+.+|.++++.  ...+||+|++++-+|+.++++|+.+.|+... ..++++++.  ....+|++..+|..+
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~n--P~~~vPvL~~~~~~i   69 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLC--PGGELPFLLYGTEVH   69 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHC--TTCCSSEEEETTEEE
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHh--ccCceeEEEEccccc
Confidence            57889777532  2348999999999999999999888876532 235677765  467899999876554

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.72  E-value=2.3e-05  Score=54.43  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +.+++++|+...      ||+|++++-.|..+|++|+.+.++.... .+++.++.. ....+|++..+|..+
T Consensus         2 ~~~~l~Ly~~~~------Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP-~~g~vP~L~~~g~~l   65 (84)
T d1oyja2           2 EEKELVLLDFWV------SPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNP-VHRKIPVLLHAGRPV   65 (84)
T ss_dssp             CSCCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHST-TTCCSCEEEETTEEE
T ss_pred             CCCceEEEcCCC------ChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCC-CcCcccEEEECCceE
Confidence            456899999885      9999999999999999999888765332 345666642 135699998766544

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=97.72  E-value=3e-05  Score=53.28  Aligned_cols=71  Identities=10%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLN  181 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~  181 (251)
                      ++.+|+..      +||+|.+++-+|..+|++|+.+++..... .+++.+... ....+|.+..+|..|.....+.+..
T Consensus         3 ~mkLy~~~------~sp~~~rvr~~l~~kgi~~e~~~v~~~~~-~~~~~~~~~-~~~~~p~l~~dg~~i~eS~~I~~YL   73 (83)
T d1gwca2           3 DLKLLGAW------PSPFVTRVKLALALKGLSYEDVEEDLYKK-SELLLKSNP-VHKKIPVLIHNGAPVCESMIILQYI   73 (83)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHST-TTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEecC------CChHHHHHHHHHHHCCCCeEEEEEeccch-hHHHHHHHh-ccCCCceeecCCceEcCHHHHHHHH
Confidence            47789887      59999999999999999999998865422 234555553 3457899999999999888777653

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=97.62  E-value=5.7e-05  Score=52.08  Aligned_cols=58  Identities=9%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC-CHHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~-d~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      .+|..+.      ||+|++++-+|+.+|++|+.+.|+. ..+..+++.++.  ....+|++..+|..
T Consensus         2 ~LY~~~~------Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~n--P~g~VP~L~~~g~~   60 (83)
T d1v2aa2           2 DYYYSLI------SPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLN--PQHTIPTLVDNGHV   60 (83)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC--TTCCSCEEEETTEE
T ss_pred             EEECCCC------ChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHh--hccCCCEEEEccce
Confidence            6899996      9999999999999999999998874 445567777764  46789999765443

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.61  E-value=9e-05  Score=50.70  Aligned_cols=71  Identities=21%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ++.+|...      .|++|.+++-+|+.+|++|+.+.++.  ......++.+..  ....+|.+..+|..+.+...+.+.
T Consensus         1 ~m~Ly~~~------~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~--p~~~vPvL~~~~~~l~eS~aI~~y   72 (80)
T d1e6ba2           1 KLKLYSYW------RSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKIN--PMGTVPALVDGDVVINDSFAIIMY   72 (80)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHC--TTCCSSEEEETTEEEESHHHHHHH
T ss_pred             CEEEEeCC------CChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcC--ccccCCEEEECCEEEECHHHHHHH
Confidence            35688777      59999999999999999999888754  333456677665  378999999999999887776665


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        73 L   73 (80)
T d1e6ba2          73 L   73 (80)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.60  E-value=6.1e-05  Score=52.22  Aligned_cols=74  Identities=7%  Similarity=0.075  Sum_probs=57.7

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+++++|+..      .|++|.+++-+|..+|++|+.+.++... ..+++.++.. ....+|.+..||..|-+...+.+.
T Consensus         3 ~~~l~Ly~~~------~Sp~~~rvr~~L~~kgi~~e~~~v~~~~-~~~~~~~~nP-~~g~vP~L~~~g~~l~eS~~I~~Y   74 (84)
T d1oyja2           3 EKELVLLDFW------VSPFGQRCRIAMAEKGLEFEYREEDLGN-KSDLLLRSNP-VHRKIPVLLHAGRPVSESLVILQY   74 (84)
T ss_dssp             SCCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHST-TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCceEEEcCC------CChHHHHHHHHHHHcCCCcEEEEEccCc-CCHHHHhhCC-CcCcccEEEECCceEEcHHHHHHH
Confidence            4678999876      5999999999999999999999886543 2345666652 136899999999999888777665


Q ss_pred             HH
Q psy15946        181 NE  182 (251)
Q Consensus       181 ~e  182 (251)
                      .+
T Consensus        75 L~   76 (84)
T d1oyja2          75 LD   76 (84)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=97.59  E-value=0.00015  Score=49.77  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=55.9

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCC-CHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM-SRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~-~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+|+..      .+++|.+++.+|+.+|++|+.+.|+. ..+.++++.++..  ...+|.+..+|..+-....+.+.
T Consensus         2 ~LY~~~------~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP--~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           2 DYYYSL------ISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNP--QHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             EEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCT--TCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEECCC------CChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhh--ccCCCEEEEccceeEcHHHHHHH
Confidence            478777      49999999999999999999998864 4556777877754  78999999999999887776664

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=97.58  E-value=4.3e-05  Score=52.48  Aligned_cols=62  Identities=10%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +++.||+...      ||+|++|+-+|..++++|+.+++..... .+++.+... ....+|.+..+|..+
T Consensus         2 ~~mkLy~~~~------sp~~~rvr~~l~~kgi~~e~~~v~~~~~-~~~~~~~~~-~~~~~p~l~~dg~~i   63 (83)
T d1gwca2           2 DDLKLLGAWP------SPFVTRVKLALALKGLSYEDVEEDLYKK-SELLLKSNP-VHKKIPVLIHNGAPV   63 (83)
T ss_dssp             CCEEEEECTT------CHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHST-TTCCSCEEEETTEEE
T ss_pred             CeEEEEecCC------ChHHHHHHHHHHHCCCCeEEEEEeccch-hHHHHHHHh-ccCCCceeecCCceE
Confidence            3588999985      9999999999999999999988865432 234555543 234578777776554

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00011  Score=51.19  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             CCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHHHH
Q psy15946        116 DTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERLNE  182 (251)
Q Consensus       116 ~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l~e  182 (251)
                      ..||+|.+++-+|...|++|+.+.++... ..+++.++..  ...+|.+..||..+.+...+.+..+
T Consensus        17 ~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP--~~~vPvL~~~~~~i~eS~~I~~YLe   80 (86)
T d1k0ma2          17 GNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCP--GGELPFLLYGTEVHTDTNKIEEFLE   80 (86)
T ss_dssp             CSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCT--TCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhc--cCceeEEEEcccccccHHHHHHHHH
Confidence            36999999999999999999998886542 2356777764  7799999999999988887776543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.51  E-value=2.4e-05  Score=54.08  Aligned_cols=55  Identities=18%  Similarity=0.428  Sum_probs=43.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +|++|+++|      |++|++++..|++.      .+.+..+|++.+++.    .+.+  +..++|.++++|+
T Consensus         4 ~v~~F~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l----~~~~--~V~~~Pt~~~~~~   64 (85)
T d1nhoa_           4 NIEVFTSPT------CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEY--GLMAVPAIAINGV   64 (85)
T ss_dssp             CEEEESCSS------SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGT--CSSCSSEEEETTT
T ss_pred             EEEEEECCC------CcchHHHHHHHhhhcccccccccccccccccchhh----HHhc--CceEeCEEEECCc
Confidence            689999998      99999999888763      367777888877763    3445  5778999999764

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.49  E-value=4.5e-05  Score=56.00  Aligned_cols=46  Identities=22%  Similarity=0.470  Sum_probs=40.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .|+||+.+.      |.-|++|+++|++++++|+.+|+..++-..+++.+++
T Consensus         1 Mi~ly~~~~------C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll   46 (114)
T d1z3ea1           1 MVTLYTSPS------CTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   46 (114)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             CEEEEcCCC------CHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHH
Confidence            378999995      9999999999999999999999998886677777665

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.47  E-value=7.9e-05  Score=50.99  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      ++.||..+.      |++|++++-+|+.+|++|+.+.|+.  .....+++.+..  ....+|++..+|..+
T Consensus         1 ~m~Ly~~~~------sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~--p~~~vPvL~~~~~~l   63 (80)
T d1e6ba2           1 KLKLYSYWR------SSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKIN--PMGTVPALVDGDVVI   63 (80)
T ss_dssp             CCEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHC--TTCCSSEEEETTEEE
T ss_pred             CEEEEeCCC------ChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcC--ccccCCEEEECCEEE
Confidence            467999985      9999999999999999998887654  333445666654  567899998766544

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.45  E-value=2.6e-05  Score=57.26  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      +++||+.+.      |.-|++|+++|+++|++|+.+|+..++-..+++.+++
T Consensus         1 t~~iY~~p~------Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~ll   46 (114)
T d1rw1a_           1 TYVLYGIKA------CDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWC   46 (114)
T ss_dssp             CEEEEECSS------CHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHH
T ss_pred             CEEEEECCC------ChHHHHHHHHHHHcCCCeEEEEccccCCCHHHHHHHH
Confidence            489999995      9999999999999999999999977665556665554

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=6.9e-05  Score=52.74  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      |..+++|+.++      ||+|.+|+-+|+.+|++|+.+.|+...  ....++.++.  ....+|++..
T Consensus         3 ~~~~tLY~~~~------sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--p~g~vP~L~d   62 (92)
T d1k0da2           3 LEGYTLFSHRS------APNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN--PNARVPALID   62 (92)
T ss_dssp             SSSEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEE
T ss_pred             CCceEEeeCCC------CccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHh--hccccceeEE
Confidence            55799999996      999999999999999999888776543  2335566553  5677999976

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=6.3e-05  Score=53.69  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIE  178 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~  178 (251)
                      ..+.+.+|+...      |++|.+++-+|+..|++|+.+.++... ..+++.++.  ....+|.+..+ |..|.+...+.
T Consensus        16 ~~~~~~Ly~~~~------sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~n--P~g~VPvL~~~dg~~i~eS~aI~   86 (98)
T d1eema2          16 PEGSIRIYSMRF------CPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKN--PFGLVPVLENSQGQLIYESAITC   86 (98)
T ss_dssp             CTTCEEEEECTT------CHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTC--TTCCSCEEEETTCCEEESHHHHH
T ss_pred             CCCcEEEEcCCC------ChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhh--ccccceeEEeCCCCEEcCHHHHH
Confidence            456789999884      999999999999999999988886532 234556554  36799999885 68888877766


Q ss_pred             HHHH
Q psy15946        179 RLNE  182 (251)
Q Consensus       179 ~l~e  182 (251)
                      +..+
T Consensus        87 ~YL~   90 (98)
T d1eema2          87 EYLD   90 (98)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=97.40  E-value=8.9e-05  Score=54.09  Aligned_cols=54  Identities=19%  Similarity=0.285  Sum_probs=42.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      +++||+.++      ||+|.+|+.+|+.++++|+.++++....  +++ ...  +...+|++.+.
T Consensus         2 ~i~LY~~~~------sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~~-~~~--~~~~vP~l~~~   55 (113)
T d1z9ha2           2 QLTLYQYKT------CPFCSKVRAFLDFHALPYQVVEVNPVLR--AEI-KFS--SYRKVPILVAQ   55 (113)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTC--GGG-TTC--SCCSSCEEEEE
T ss_pred             EEEEEcCCC------ChHHHHHHHHHHHcCCeeEEeccCcccc--hhh-ccC--ccccccccccc
Confidence            589999996      9999999999999999999998865433  222 222  56789998764

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=97.35  E-value=7.1e-05  Score=54.66  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC----CeeeCChHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE----GVHIGDADAIE  178 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~----g~~iGG~d~l~  178 (251)
                      ++++|+..      +||+|.+++.+|..+|++|+.++++....  +++ ...  +...+|.+.+.    |+.+++...+.
T Consensus         2 ~i~LY~~~------~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~~-~~~--~~~~vP~l~~~~~~~g~~i~eS~~Ii   70 (113)
T d1z9ha2           2 QLTLYQYK------TCPFCSKVRAFLDFHALPYQVVEVNPVLR--AEI-KFS--SYRKVPILVAQEGESSQQLNDSSVII   70 (113)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTC--GGG-TTC--SCCSSCEEEEEETTEEEEECSHHHHH
T ss_pred             EEEEEcCC------CChHHHHHHHHHHHcCCeeEEeccCcccc--hhh-ccC--ccccccccccccCCCceEeecHHHHH
Confidence            47899988      59999999999999999999999865432  222 233  46799998753    47899988877


Q ss_pred             HHHH
Q psy15946        179 RLNE  182 (251)
Q Consensus       179 ~l~e  182 (251)
                      +..+
T Consensus        71 ~YL~   74 (113)
T d1z9ha2          71 SALK   74 (113)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6443

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=97.23  E-value=0.00018  Score=49.80  Aligned_cols=59  Identities=19%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      ++++|..+.      +++|++++-+|+.+|++|+.+.|+..  ....+++.++.  ....+|.+..+|.
T Consensus         1 t~iLY~~~~------S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~   61 (85)
T d1r5aa2           1 TTVLYYLPA------SPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELN--PQHCIPTMDDHGL   61 (85)
T ss_dssp             CEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSSEEEETTE
T ss_pred             CEEEEcCCC------CHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHH--hcCCCCEEEEccc
Confidence            479999996      99999999999999999988877643  33456677664  4567999876543

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00047  Score=48.23  Aligned_cols=73  Identities=15%  Similarity=0.105  Sum_probs=55.9

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEE---CCeeeCChH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFV---EGVHIGDAD  175 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi---~g~~iGG~d  175 (251)
                      +..+++|+...      |++|.+++-+|+.+|++|+.+.++...  ....++.+..  ...++|.+..   +|..|....
T Consensus         3 ~~~~tLY~~~~------sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--p~g~vP~L~d~~~~~~~l~ES~   74 (92)
T d1k0da2           3 LEGYTLFSHRS------APNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN--PNARVPALIDHGMDNLSIWESG   74 (92)
T ss_dssp             SSSEEEEECTT------CHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEEGGGTTEEEESHH
T ss_pred             CCceEEeeCCC------CccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHh--hccccceeEEecccceEEcCHH
Confidence            45689999884      999999999999999999999886543  2335566654  4789999987   688887766


Q ss_pred             HHHHHH
Q psy15946        176 AIERLN  181 (251)
Q Consensus       176 ~l~~l~  181 (251)
                      .+....
T Consensus        75 aI~~YL   80 (92)
T d1k0da2          75 AILLHL   80 (92)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.6e-05  Score=52.68  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .++++||+.+.      ||+|++++-+|+.+|++|+.+.|+.... .+++.++.  ....+|++..+
T Consensus        17 ~~~~~Ly~~~~------sP~~~rv~~~l~~kgi~~e~~~v~~~~~-~~~~~~~n--P~g~VPvL~~~   74 (98)
T d1eema2          17 EGSIRIYSMRF------CPFAERTRLVLKAKGIRHEVININLKNK-PEWFFKKN--PFGLVPVLENS   74 (98)
T ss_dssp             TTCEEEEECTT------CHHHHHHHHHHHHTTCCEEEEEBCTTSC-CGGGGGTC--TTCCSCEEEET
T ss_pred             CCcEEEEcCCC------ChHHHHHHHHHHHhCCCCEEEEecccCC-cHHHHhhh--ccccceeEEeC
Confidence            45799999996      9999999999999999998887754321 23455553  45679999764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00043  Score=49.15  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=39.0

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc----------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .|++|+++|      |++|++++..+.+.          .|.+..+|++..++    +.+.+  +..++|++++.
T Consensus        18 ~i~~F~a~w------C~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~--~V~~vPTi~i~   80 (107)
T d1a8la2          18 RILVFVTPT------CPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQY--NVMAVPKIVIQ   80 (107)
T ss_dssp             EEEEEECSS------CTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHT--TCCSSCEEEEE
T ss_pred             EEEEEEcCc------cccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc----ccccc--ccccceEEEEE
Confidence            455699998      99999999888763          25666777777665    44555  57789998764

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0011  Score=45.24  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC----HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS----RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~----~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      -|+|+..      .++.|.+++-+|+..|++|+.+.|+..    .....++.++..  ..++|.+..||..|.....+.+
T Consensus         2 piLY~~~------~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP--~g~vP~L~~~g~~i~eS~aI~~   73 (83)
T d1fw1a2           2 PILYSYF------RSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNP--MKQVPTLKIDGITIHQSLAIIE   73 (83)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCT--TCCSCEEEETTEEEESHHHHHH
T ss_pred             CEEEcCC------CChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhcc--CCccCEEEECCEEEecHHHHHH
Confidence            3688777      489999999999999999998876532    234466777754  7799999999999988777666


Q ss_pred             HHH
Q psy15946        180 LNE  182 (251)
Q Consensus       180 l~e  182 (251)
                      ..+
T Consensus        74 yL~   76 (83)
T d1fw1a2          74 YLE   76 (83)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=96.99  E-value=0.00016  Score=49.50  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+.+|...      .|++|.+++-+|...|++|+.+.++..  .....++.+..  ...++|.+..+|..+.+...+.+.
T Consensus         2 pm~Ly~~~------~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~eS~aI~~Y   73 (81)
T d1aw9a2           2 PLKLYGMP------LSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALN--PFGQIPALVDGDEVLFESRAINRY   73 (81)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTC--TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEeCC------CChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHh--hcCeeEEEEECCcEEECHHHHHHH
Confidence            36788887      499999999999999999999887543  22334555554  367999999999999887776665


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (81)
T d1aw9a2          74 I   74 (81)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00031  Score=47.57  Aligned_cols=58  Identities=9%  Similarity=0.128  Sum_probs=44.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +.+|..+.      +|+|++++-+|+.+|++|+.+.|+...  ...+++.+..  ....+|++..+|.
T Consensus         3 m~LY~~~~------sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--p~g~vP~L~d~~~   62 (79)
T d1ljra2           3 LELFLDLV------SQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN--SLGKLPTLKDGDF   62 (79)
T ss_dssp             CEEEECTT------SHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEETTE
T ss_pred             EEEeeCCC------ChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhh--hhcceeEEEeCCc
Confidence            68999996      999999999999999999988875443  3345666554  4677999976543

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00058  Score=46.80  Aligned_cols=60  Identities=15%  Similarity=0.294  Sum_probs=45.8

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC----HHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS----RETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d----~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      -|+|+.+.      +++|.+++-+|+.+|++|+.+.|+..    .....++.++.  ...++|++..+|..+
T Consensus         2 piLY~~~~------S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~i   65 (83)
T d1fw1a2           2 PILYSYFR------SSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALN--PMKQVPTLKIDGITI   65 (83)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHC--TTCCSCEEEETTEEE
T ss_pred             CEEEcCCC------ChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhc--cCCccCEEEECCEEE
Confidence            37999995      99999999999999999988766432    22346677765  466899998766543

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=96.95  E-value=9.3e-05  Score=50.73  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      ++||..+.      ||+|.+++-+|+.+|++|+.+.|+...  ...+++.++.  ....+|++..+|..
T Consensus         3 m~Ly~~~~------sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~   63 (81)
T d1aw9a2           3 LKLYGMPL------SPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALN--PFGQIPALVDGDEV   63 (81)
T ss_dssp             EEEESCTT------CHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTC--TTCCSCEEEETTEE
T ss_pred             EEEEeCCC------ChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHh--hcCeeEEEEECCcE
Confidence            78999996      999999999999999999998876432  2334556554  45679998766543

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0003  Score=47.48  Aligned_cols=52  Identities=23%  Similarity=0.574  Sum_probs=34.4

Q ss_pred             ccccccCCcce-----eeCCCCCCCceeeecc--cccccccceeCCCCCccccc-----ccCCC
Q psy15946        200 TICQVCGGYRL-----LPCSLCNGSKKSVHRN--HFTTELVALKCMNCDEVGLV-----KCYAC  251 (251)
Q Consensus       200 ~~C~~Cgg~~~-----~~C~~C~gs~k~~~~~--~~~~~~~~~~C~~Cnengl~-----~C~~C  251 (251)
                      ..|..|.|.+.     ..|+.|+|+-+++...  .+........|+.|+-.|.+     +|+.|
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C   66 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSC   66 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSS
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCC
Confidence            36888888884     4599999997665321  11111134679999988865     58877

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=96.88  E-value=0.00042  Score=47.20  Aligned_cols=58  Identities=12%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH--HHHHHHHHHhCCCCCCCCceeeec
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~--~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      .+.||+.+.      +++|.+++-+|+.+|++|+.++|+...  ....++.++.  ....+|++..+|
T Consensus         2 p~~Ly~~~~------S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~   61 (80)
T d1axda2           2 PMKLYGAVM------SWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN--PFGQVPALQDGD   61 (80)
T ss_dssp             CEEEESCTT------CTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTC--TTCCSCEEEETT
T ss_pred             CEEEEECCC------ChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhh--ccccCCEEEECC
Confidence            378999995      999999999999999999988876433  2345666654  456799987654

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=96.87  E-value=0.00069  Score=46.55  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeecc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGV   91 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~   91 (251)
                      +.+|..+.      +++|++++-+|+.++++|+.+.|+..  .....++.++.  ....+|++..+|.
T Consensus         1 mkLY~~~~------S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~~~   60 (84)
T d1jlva2           1 MDFYYLPG------SAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKIN--PQHCIPTLVDNGF   60 (84)
T ss_dssp             CEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTE
T ss_pred             CEEEcCCC------CHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHh--ccccCCEEEECCE
Confidence            36899995      99999999999999999999887643  23345777765  4677999876543

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=96.85  E-value=0.0013  Score=45.19  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=55.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +++|...      .+++|.+++-+|+.+|++|+.+.|+..  .....++.++.  ...++|.+..||..+-....+.+.
T Consensus         2 ~iLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           2 TVLYYLP------ASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELN--PQHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC--TTCCSSEEEETTEEEECHHHHHHH
T ss_pred             EEEEcCC------CCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHH--hcCCCCEEEEcccceecHHHHHHH
Confidence            6889988      499999999999999999999887643  34456777665  467899999999999887776664

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=96.83  E-value=0.001  Score=45.17  Aligned_cols=71  Identities=11%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH--HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR--ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~--~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+.+|...      ++++|.+++-+|+..|++|+.++|+...  ....++.++.  ....+|.+..+|..+.....+.+.
T Consensus         2 p~~Ly~~~------~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~l~ES~aI~~Y   73 (80)
T d1axda2           2 PMKLYGAV------MSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN--PFGQVPALQDGDLYLFESRAICKY   73 (80)
T ss_dssp             CEEEESCT------TCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECC------CChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhh--ccccCCEEEECCEEEECHHHHHHH
Confidence            36788888      4999999999999999999998876432  2345666664  477999999999888777766654


Q ss_pred             H
Q psy15946        181 N  181 (251)
Q Consensus       181 ~  181 (251)
                      .
T Consensus        74 L   74 (80)
T d1axda2          74 A   74 (80)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=96.81  E-value=0.00042  Score=50.52  Aligned_cols=46  Identities=22%  Similarity=0.494  Sum_probs=39.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g  155 (251)
                      |+||+.+      +|+.|.+++++|+++|++|+.+|+..++-..++|.++..
T Consensus         2 i~ly~~~------~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~   47 (114)
T d1z3ea1           2 VTLYTSP------SCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILR   47 (114)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             EEEEcCC------CCHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHHH
Confidence            6789888      699999999999999999999999887666666666653

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0012  Score=44.49  Aligned_cols=69  Identities=10%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|....      +++|.+++-+|+.+|++|+.+.++..  .....++.+..  ....+|.+..+|..+-....+.+.
T Consensus         3 m~LY~~~~------sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--p~g~vP~L~d~~~~l~ES~aI~~y   73 (79)
T d1ljra2           3 LELFLDLV------SQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN--SLGKLPTLKDGDFILTESSAILIY   73 (79)
T ss_dssp             CEEEECTT------SHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTC--TTCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEeeCCC------ChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhh--hhcceeEEEeCCcEEEcHHHHHHH
Confidence            56888874      89999999999999999999887544  33445666665  478999999999988877766554

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00049  Score=51.97  Aligned_cols=45  Identities=9%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHh
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      |+||..+.      |.-|++|.++|++++++|+.+|+..++-..+++..++
T Consensus         2 i~iY~~p~------Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll   46 (138)
T d1j9ba_           2 ITIYHNPA------CGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLI   46 (138)
T ss_dssp             CEEECCTT------CHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             eEEEECCC------CHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHHH
Confidence            78999995      9999999999999999999999988775555555443

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.62  E-value=0.00052  Score=47.13  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHHHHHHHHhCCCCCCCCceeeeccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVH   92 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~~el~~~~g~g~~~vP~i~i~g~~   92 (251)
                      +.+|+.+.      |++|++++-+|+.+|++|+.+.|+..  ....+++.++.  ....+|.+..+|..
T Consensus         2 ~kLY~~~~------s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~   62 (84)
T d1gnwa2           2 IKVFGHPA------SIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN--PFGQVPAFEDGDLK   62 (84)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTC--TTCCSCEEEETTEE
T ss_pred             eEEEeCCC------ChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHh--hcCcceEEEECCcE
Confidence            68999995      99999999999999999988877543  22234566554  35679999865443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.60  E-value=0.00025  Score=48.35  Aligned_cols=54  Identities=20%  Similarity=0.450  Sum_probs=38.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc----C--CccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH----L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      .|++|+++|      |++|+.+...+++.    +  +.+..+|.+.+++.    .+.+  +..++|++++.+
T Consensus         5 ~v~~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l----a~~~--~V~~~Pt~~i~~   64 (85)
T d1fo5a_           5 KIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEY--GIMAVPTIVING   64 (85)
T ss_dssp             EEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTST--TTCCSSEEEETT
T ss_pred             EEEEEECCC------CcChHhhhhhccccccccccccccccccccccccc----cccC--CceEeeEEEEEC
Confidence            678899998      99999988888752    2  34555666665553    3334  567899998764

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.59  E-value=0.00033  Score=51.08  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=31.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS  143 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~  143 (251)
                      ++||+.+      .|..|++++++|+++|++|+.+|+..+
T Consensus         2 ~~iY~~p------~Cs~srka~~~L~~~~i~~~~idy~k~   35 (114)
T d1rw1a_           2 YVLYGIK------ACDTMKKARTWLDEHKVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEEECC------CChHHHHHHHHHHHcCCCeEEEEcccc
Confidence            7899988      699999999999999999999998544

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00073  Score=46.00  Aligned_cols=52  Identities=31%  Similarity=0.698  Sum_probs=36.9

Q ss_pred             CCccccccCCcce------eeCCCCCCCceeeecccccccccceeCCCCCccccc---ccCCC
Q psy15946        198 ACTICQVCGGYRL------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLV---KCYAC  251 (251)
Q Consensus       198 ~~~~C~~Cgg~~~------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~---~C~~C  251 (251)
                      ....|..|.|.+.      ..|+.|+|+-++.....+.  .....|+.||-.|.+   +|+.|
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~--~~~~~C~~C~G~G~~i~~~C~~C   70 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF--AVQQTCPHCQGRGTLIKDPCNKC   70 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTE--EEEEECTTTTTSSEECSSBCGGG
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEEEecccc--eeeEECcccCcceeECCCCCCCC
Confidence            4568999998763      6699999998765322221  234679999999966   77766

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.55  E-value=0.00088  Score=45.72  Aligned_cols=59  Identities=20%  Similarity=0.456  Sum_probs=43.2

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhc----C--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCe--eeCC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTH----L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGV--HIGD  173 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~----~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~--~iGG  173 (251)
                      .|.+|+++|      |++|.+++.+|++.    +  +.+..+|++.+++    +....|  ...+|.++++|+  ++|.
T Consensus         4 ~v~~F~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~--V~~~Pt~~~~~~~~~~G~   70 (85)
T d1nhoa_           4 NIEVFTSPT------CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYG--LMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CEEEESCSS------SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTC--SSCSSEEEETTTEEEECS
T ss_pred             EEEEEECCC------CcchHHHHHHHhhhcccccccccccccccccchh----hHHhcC--ceEeCEEEECCcEEEEcC
Confidence            477899997      99999988877643    3  5677778876654    344454  788999999875  5664

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=96.46  E-value=0.0043  Score=42.33  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .+|...      .+++|.+++-+|+.+|++|+.+.|+..  .....++.++.  ....+|.+..+|..|-....+.+.
T Consensus         2 kLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           2 DFYYLP------GSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKIN--PQHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             EEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC--TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEcCC------CCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHh--ccccCCEEEECCEEEEcHHHHHHH
Confidence            467777      489999999999999999999988542  33455777775  478999999999988777666554

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.42  E-value=0.0028  Score=42.85  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHH----HHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQI----LRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~----L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      -+|.||++ +      |+.|.++.+.    ++++|++.+..+|..    .+++.+.   |..++|.++|||+..
T Consensus         2 m~IkVlg~-g------C~~C~~~~~~v~~a~~e~gi~a~v~kv~d----~~ei~~y---gVmstPalvIdg~vv   61 (77)
T d1iloa_           2 MKIQIYGT-G------CANCQMLEKNAREAVKELGIDAEFEKIKE----MDQILEA---GLTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEEECS-S------SSTTHHHHHHHHHHHHHTTCCEEEEEECS----HHHHHHH---TCSSSSCEEETTEEE
T ss_pred             cEEEEeCC-C------CccHHHHHHHHHHHHHHcCCceEEEEeCC----HHHHHHc---CCcCCCEEEECCEEE
Confidence            36888864 4      9999965554    777999988777753    3345543   689999999998754

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.35  E-value=0.0016  Score=44.49  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCC--HHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~--~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|...      .+++|.+++-+|+.+|++|+.+.|+..  ....+++.++.  ...++|.+..+|..|-....+.+.
T Consensus         2 ~kLY~~~------~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGHP------ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN--PFGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTC--TTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeCC------CChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHh--hcCcceEEEECCcEEecHHHHHHH
Confidence            5688877      499999999999999999998887543  22335566554  367899999999988776666554

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0031  Score=42.07  Aligned_cols=62  Identities=10%  Similarity=0.101  Sum_probs=45.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +.++|.-+.      .+.|+.+|-+|+..+++|+++.++.......+.....  ....+|++..+|..+.
T Consensus         2 ~~~L~yf~~------~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~--p~g~vP~L~~~g~~i~   63 (77)
T d2a2ra2           2 PYTVVYFPV------RGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASC--LYGQLPKFQDGDLTLY   63 (77)
T ss_dssp             SEEEEECSS------SGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHS--TTSCSCEEEETTEEEE
T ss_pred             CEEEEEcCC------chhHHHHHHHHHHcCCCcEEEEecccccccccccccC--CCCCCCEEEECCEeee
Confidence            567777774      7899999999999999999998876544333333332  3457999988776543

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0089  Score=39.70  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|.-..      ...|+.+|-+|...|++|+++.++.......+.....  ....+|.+..||..|.....+.+.
T Consensus         3 ~~L~yf~~------~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~--p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           3 YTVVYFPV------RGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASC--LYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             EEEEECSS------SGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHS--TTSCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEEcCC------chhHHHHHHHHHHcCCCcEEEEecccccccccccccC--CCCCCCEEEECCEeeecHHHHHHH
Confidence            45655553      5789999999999999999999875443333333333  356899999999999877766554

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.0061  Score=42.76  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc----------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH----------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~----------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~  169 (251)
                      |++|+++|      |++|..++.+|++.          .|.+..+|...+++    +.+..+  ...+|.+++  +|+
T Consensus        19 i~~F~a~w------C~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~~--V~~vPTi~i~~~G~   84 (107)
T d1a8la2          19 ILVFVTPT------CPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYN--VMAVPKIVIQVNGE   84 (107)
T ss_dssp             EEEEECSS------CTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTT--CCSSCEEEEEETTE
T ss_pred             EEEEEcCc------cccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc----cccccc--cccceEEEEEeCCe
Confidence            44588886      99999999888654          35667778776654    555665  778998755  554

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.14  E-value=0.006  Score=43.75  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=41.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-|+.|+++|      |+.|++++..|++.     ++.|..+|++.+++    +.+.+  +..++|.+.+
T Consensus        27 ~~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~--~V~~~Pt~~~   85 (113)
T d1r26a_          27 ILTVAWFTAVW------CGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKC--RVLQLPTFII   85 (113)
T ss_dssp             SCEEEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCC------Cccchhhceeccccccccccccccccccccchh----hHHHc--cccCCCEEEE
Confidence            34566688998      99999999888873     57788888888876    44455  5677898854

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0053  Score=40.75  Aligned_cols=60  Identities=17%  Similarity=0.240  Sum_probs=45.1

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +++.+|..+.      .+.|+.+|-+|+..|++|+++.++.+.  ..++++..  ....+|.+..+|..+
T Consensus         1 P~~kL~yf~~------~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~--p~g~vP~L~~~g~~l   60 (74)
T d2cvda2           1 PNYKLTYFNM------RGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTL--PFGKIPILEVDGLTL   60 (74)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTS--TTSCSCEEEETTEEE
T ss_pred             CcEEEEEcCC------cHHHHHHHHHHHHcCCCCEeccccccc--chhhcccC--CCCCcCEEEECCEEE
Confidence            3578888885      899999999999999999998887543  23444332  456799998876554

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.09  E-value=0.0097  Score=41.82  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=40.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +-++.|+++|      |++|+++...|++.      .+.+..+|++.+++    +.+.+  +..++|.+++
T Consensus        22 ~vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~--~I~~~Pt~~~   80 (108)
T d1thxa_          22 PVLVYFWASW------CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKY--KVEGVPALRL   80 (108)
T ss_dssp             CEEEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             cEEEEEECCC------CCCccccchHHHHHHHhcCCcceeceecccccHH----HHHHh--cccCCCEEEE
Confidence            4567788998      99999999998763      25677888888776    44455  4677998865

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.03  E-value=0.0072  Score=43.19  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=39.9

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeeccC--CHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~~--d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|+++|      |++|+++...|++    ++..+..++++.  +.+..+.+.+..  +..++|++++
T Consensus        27 ~~~~v~f~~~~------C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~V~~~PTli~   90 (115)
T d1zmaa1          27 ETATFFIGRKT------CPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRY--GIPTVPGFVH   90 (115)
T ss_dssp             CCEEEEEECTT------CHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHH--TCCSSCEEEE
T ss_pred             CCEEEEEcCCC------CccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccc--ccccccEEEE
Confidence            44677777787      9999999888765    445555556653  444455666666  5788999864

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.85  E-value=0.0021  Score=43.50  Aligned_cols=59  Identities=24%  Similarity=0.480  Sum_probs=39.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHh----cC--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC--eeeCC
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRT----HL--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG--VHIGD  173 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~----~~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g--~~iGG  173 (251)
                      .|++|+++|      |++|..+...+++    ++  +.+..+|.+.+++    +.+..+  ...+|.+++++  +++|.
T Consensus         5 ~v~~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~----la~~~~--V~~~Pt~~i~~~g~~~G~   71 (85)
T d1fo5a_           5 KIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYG--IMAVPTIVINGDVEFIGA   71 (85)
T ss_dssp             EEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTT--TCCSSEEEETTEEECCSS
T ss_pred             EEEEEECCC------CcChHhhhhhcccccccccccccccccccccccc----ccccCC--ceEeeEEEEECCcEEECC
Confidence            366788997      9999988877754    32  3455566655543    333444  78899988865  56765

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.80  E-value=0.008  Score=42.97  Aligned_cols=51  Identities=12%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      |+.|+++|      |++|+.+...|++.     ++.|..+|++.+++.    .+.+  +...+|.+++
T Consensus        32 lv~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l----~~~~--~V~~~Pt~~~   87 (114)
T d1xfla_          32 VVDFTASW------CGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSV----ASDW--AIQAMPTFMF   87 (114)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHH----HHHT--TCCSSSEEEE
T ss_pred             EEEEEcCC------CCCccccccchhhhcccccccceeEEEeeeceee----cccc--ceeeeEEEEE
Confidence            44488998      99999999888763     456777788877764    3445  4677998854

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0026  Score=47.77  Aligned_cols=46  Identities=9%  Similarity=0.100  Sum_probs=36.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCH---HHHHHHHHHhC
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLG  155 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~---~~~~el~~~~g  155 (251)
                      |+||+.+      .|..|.++.++|++.|++|+.+|+..++   +....+.+.+|
T Consensus         2 i~iY~~p------~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll~~lg   50 (138)
T d1j9ba_           2 ITIYHNP------ACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMG   50 (138)
T ss_dssp             CEEECCT------TCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHT
T ss_pred             eEEEECC------CCHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHHHHHcc
Confidence            7899988      6999999999999999999999987654   33344444433

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.69  E-value=0.012  Score=41.91  Aligned_cols=52  Identities=21%  Similarity=0.278  Sum_probs=39.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -|+.|+++|      |++|+.++..|++.      .+.|..+|++.+++    +.+.+  +...+|.+++
T Consensus        27 vvv~f~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~--~v~~~Pt~~~   84 (112)
T d1ep7a_          27 IVVDFTATW------CGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAA--GITAMPTFHV   84 (112)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHH--TCCBSSEEEE
T ss_pred             EEEEEEcCC------cCCCcccchhhhhhhhcccceEEEEEeecccccc----ccccc--cccCCCEEEE
Confidence            466788898      99999999888763      37788888887776    44455  4677898764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.013  Score=41.49  Aligned_cols=50  Identities=16%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF   87 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~   87 (251)
                      |+-|+++|      |++|+++...|++.     ++.|..+|++.+++.    .+.+  +...+|.+.
T Consensus        25 vv~F~a~w------C~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l----~~~~--~v~~~Pt~~   79 (107)
T d1gh2a_          25 VVKFTMRG------CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT----AATN--NISATPTFQ   79 (107)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHT--TCCSSSEEE
T ss_pred             EEEEECCC------CCCccccchhhhccccccccccccccccccchhh----hhhc--CceeceEEE
Confidence            44489998      99999999888753     567778888887764    4455  467789874

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.63  E-value=0.019  Score=40.17  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=38.9

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +-|+.|.++|      |++|.++...+.+.      .+.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        21 pvlv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~--~V~~~Pt~~~   79 (107)
T d1dbya_          21 PVLVDFWAPW------CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEY--GIRSIPTIMV   79 (107)
T ss_dssp             CEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHH--TCCSSCEEEE
T ss_pred             cEEEEEECCC------CCCccccChHHHHHHHhhcccceEEEEecccchh----HHHHh--cccceEEEEE
Confidence            3466699998      99999998887763      35667778887776    44455  5677999864

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.014  Score=40.95  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -|+.|+++|      |++|+.+...|.+.     ++.+..+|++.+++.    .+.+  +..++|.+.+
T Consensus        23 vvv~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~----~~~~--~V~~~Pt~~~   79 (105)
T d2ifqa1          23 VVVDFSATW------CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV----ASEC--EVKCMPTFQF   79 (105)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHT--TCCBSSEEEE
T ss_pred             EEEEEEcCC------ccchhhhhhhhhhhccccccceeeecccccCHhH----HHHc--CceEEEEEEE
Confidence            455589998      99999999988763     356777888887764    3445  5677999854

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.50  E-value=0.021  Score=39.73  Aligned_cols=54  Identities=15%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .+-|+.|.++|      |++|+.+...|++.      .+.+..+|++.+++.    .+.+  +...+|.+++
T Consensus        18 k~vvv~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~--~V~~~Pt~~~   77 (105)
T d1nw2a_          18 KPVLVDFWAAW------CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQF--GIMSIPTLIL   77 (105)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHT--TCCBSSEEEE
T ss_pred             CcEEEEEECCC------CCCcccccchhhhhhhhcCCceEEEEEECCCCccc----HHHC--CcceeeEEEE
Confidence            45678899998      99999999888863      477888899888774    3445  4677898864

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.025  Score=37.22  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=50.3

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.+|.-..      ...|+.+|-+|...||+|+++.+..+  ...+.++..  ....+|.+.+||..|.....+.+.
T Consensus         3 ~kL~yf~~------~~~~~~vRl~L~~~gi~~e~~~~~~~--~~~~~~~~~--p~g~vP~L~~~g~~l~qS~AI~~y   69 (74)
T d2cvda2           3 YKLTYFNM------RGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTL--PFGKIPILEVDGLTLHQSLAIARY   69 (74)
T ss_dssp             EEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTS--TTSCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEEcCC------cHHHHHHHHHHHHcCCCCEecccccc--cchhhcccC--CCCCcCEEEECCEEEEcHHHHHHH
Confidence            45666663      67899999999999999999888654  334444443  467899999999988876666554

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.47  E-value=0.016  Score=40.29  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=39.2

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .-|+.|+++|      |++|+.+...|++.     ++.+..+|++..++    +.+.+  +...+|++.+
T Consensus        20 ~vvv~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~--~V~~~Pt~i~   77 (103)
T d1syra_          20 LVIVDFFAEW------CGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKE--NITSMPTFKV   77 (103)
T ss_dssp             EEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHT--TCCSSSEEEE
T ss_pred             cEEEEEeCCc------ccCcccccccchhhhhcccceEEEeeccccCcc----eeeee--eeecceEEEE
Confidence            3456688997      99999999888763     45677788887776    44455  5677999754

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.064  Score=40.12  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhCCCCCCCceEEE-CCeeeCCh---HHHHHHHH
Q psy15946        145 ETQQEFKERLGTDVINVPQIFV-EGVHIGDA---DAIERLNE  182 (251)
Q Consensus       145 ~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~---d~l~~l~e  182 (251)
                      +...++-+.+|  ....|.+|+ ||+.+-|+   +++.++.+
T Consensus       108 ~~~~~la~~lg--v~GTPt~~~~nG~~v~G~~~~e~l~~~i~  147 (156)
T d1eeja1         108 ADHYALGVQLG--VSGTPAVVLSNGTLVPGYQPPKEMKEFLD  147 (156)
T ss_dssp             HHHHHHHHHHT--CCSSSEEECTTSCEEESCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CcCCCEEEEeCCeEecCCCCHHHHHHHHH
Confidence            33445566666  788899887 88988664   55555544

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.16  E-value=0.039  Score=38.49  Aligned_cols=56  Identities=11%  Similarity=0.157  Sum_probs=39.0

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~~i  171 (251)
                      ++.|+++|      |+.|.++...|++.      .+.+..+|++.+++    +.+..+  ...+|.+++  +|+.+
T Consensus        24 lv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~--I~~~Pt~~~~~~g~~v   87 (108)
T d1thxa_          24 LVYFWASW------CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYK--VEGVPALRLVKGEQIL   87 (108)
T ss_dssp             EEEEECTT------CTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEECCC------CCCccccchHHHHHHHhcCCcceeceecccccHH----HHHHhc--ccCCCEEEEEECCEEE
Confidence            34567776      99999888888544      25577888887765    445555  788998644  78633

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0048  Score=46.15  Aligned_cols=56  Identities=13%  Similarity=0.300  Sum_probs=41.4

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee--eecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF--VEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~--i~g~~~   93 (251)
                      |+.|+++|      |+.|+++...|++.      .+.|..+|++.+++    +.+.+  +..++|++.  .+|+++
T Consensus        26 vv~F~a~w------C~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~--~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          26 VIRFGHDW------DPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMY--ELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             EEEEECTT------SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSS--CSCSSCEEEEEETTEEE
T ss_pred             EEEEECCC------CccchhcChHHHHHHHHhhccceEEEeeccccch----hhhhc--CeeeEEEEEEEeCCcEE
Confidence            44499998      99999999999874      26777889988876    33444  467789884  556554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.02  Score=39.98  Aligned_cols=52  Identities=10%  Similarity=0.201  Sum_probs=36.6

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc----C--CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH----L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~----~--v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -++.|+++|      |++|+.+...+.+.    .  +.+..+|++.++.    +.+.+  +..++|.+++
T Consensus        23 v~v~F~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~--~v~~~PT~~~   80 (108)
T d2trxa_          23 ILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKY--GIRGIPTLLL   80 (108)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHT--TCCSSSEEEE
T ss_pred             EEEEEECCC------CCCccccCcHHHHHHHHhhcceeeeeccccchhh----HHHHh--CCCcEEEEEE
Confidence            455688998      99999988877653    2  3456667776665    44555  5778998764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.02  E-value=0.038  Score=38.21  Aligned_cols=53  Identities=6%  Similarity=0.164  Sum_probs=37.5

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      +-++.|+++|      |++|.++...+++..      +.+..+|++.+++    +.+.+  +..++|.+++
T Consensus        19 ~vlv~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~--~V~~~Pt~~~   77 (104)
T d1fb6a_          19 PVMVDFWAPW------CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQY--NIRSIPTVLF   77 (104)
T ss_dssp             CEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             cEEEEEEcCc------cCCccccCchhHHHHHhhcCccceeEEecccchh----hhhhc--ceeeeeEEEE
Confidence            3466688998      999999998887642      3455566666665    44556  5778999864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=95.02  E-value=0.017  Score=41.01  Aligned_cols=51  Identities=20%  Similarity=0.290  Sum_probs=36.7

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      |+-|.++|      |++|+.+...|++.     ++.+..+|++.+++..    +.+  +...+|.+.+
T Consensus        30 vv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~----~~~--~I~~~Pt~~~   85 (113)
T d1ti3a_          30 VVDFTASW------CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVA----EEW--NVEAMPTFIF   85 (113)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHH----HHH--HCSSTTEEEE
T ss_pred             EEEEEcCc------cccchhhhhhhhhhhccCCCceEEeeeeecccccc----ccC--eecccceEEE
Confidence            45588898      99999998887763     4566777888777644    334  3567898864

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.027  Score=40.25  Aligned_cols=54  Identities=6%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-+|.|+++|      |++|+++...+++.       .|.+-.+|++.+.+    +...+  +..++|.+++
T Consensus        28 ~~~lV~fya~w------C~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~----l~~~~--~v~~~Pti~~   88 (119)
T d2b5ea4          28 DLVLAEFFAPW------CGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEH--NIPGFPSLKI   88 (119)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEECCc------cCcccccchhhhhhhhhhcccceeeeeeeccchHH----HHHHh--ccccCCeEEE
Confidence            45788899998      99999988877652       36677788877665    45555  4677999965

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=94.62  E-value=0.066  Score=35.24  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      .++|.-+.      -..++.+|-+|+..|++|+++.+....... ............+|.+-.||..|.....+.+.
T Consensus         2 pkL~yf~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~-~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           2 PKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKEQLY-KLQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             CEEEEESS------CTTTHHHHHHHHHTTCCCEEEEECSHHHHH-HHHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEcCC------cchHHHHHHHHHHcCCCceEEeeccccccc-hhhhcccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            34555553      577899999999999999988776543332 22222223457899999999988776655543

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.012  Score=39.56  Aligned_cols=39  Identities=26%  Similarity=0.629  Sum_probs=31.7

Q ss_pred             CccccccCCccee-----------eCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRLL-----------PCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~~-----------~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|.+.+           +|+.|+|+-+++          .-+|+.|+-+|.++
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~   77 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI----------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC----------SSBCGGGTTSSEEE
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCcceeEC----------CCCCCCCCCceEee
Confidence            4679999999855           699999998874          13799999999764

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=94.59  E-value=0.026  Score=37.49  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.++|.-..      -..|+.+|-+|+..||+|+++.++..... .............+|.+.+||..|.....+.+.
T Consensus         3 K~kL~yf~~------~~~~~~vR~~L~~~gi~ye~~~~~~~~~~-~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2           3 KPKLYYFNG------RGRMESIRWLLAAAGVEFEEEFLETREQY-EKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             CCEEEBCSS------CTTTHHHHHHHHHHTCCCCCCBCCCHHHH-HHHHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CcEEEEcCC------chHHHHHHHHHHHcCCCcEEEEEcchhhh-cchhhcccccCCCCCEEEeCCeEEECHHHHHHH
Confidence            455666553      57889999999999999998887654332 222222222346799999999988876666554

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.59  E-value=0.049  Score=36.42  Aligned_cols=55  Identities=18%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             heeeeeeecccccCCCcchH----HHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeee
Q psy15946        103 KIVMYSTTMGIVRDTYHRCL----KVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI  171 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~----~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~i  171 (251)
                      +|-|++++       |+.|.    .+++++.++|+..+..++..    ..++.+ .|  ..++|.+.|||+.+
T Consensus         3 ~IkVlg~g-------C~~C~~~~~~v~~a~~e~gi~a~v~kv~d----~~ei~~-yg--VmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIYGTG-------CANCQMLEKNAREAVKELGIDAEFEKIKE----MDQILE-AG--LTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEECSS-------SSTTHHHHHHHHHHHHHTTCCEEEEEECS----HHHHHH-HT--CSSSSCEEETTEEE
T ss_pred             EEEEeCCC-------CccHHHHHHHHHHHHHHcCCceEEEEeCC----HHHHHH-cC--CcCCCEEEECCEEE
Confidence            46677654       99999    45566889999988888853    233443 44  78999999999854

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.56  E-value=0.06  Score=37.98  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+.|+++|      |++|..+...|++.      .+.|..+|++.+++    +.+..+  ...+|.+  |-+|+.+
T Consensus        28 vv~f~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~--v~~~Pt~~~~~~G~~v   91 (112)
T d1ep7a_          28 VVDFTATW------CGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAAG--ITAMPTFHVYKDGVKA   91 (112)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHHT--CCBSSEEEEEETTEEE
T ss_pred             EEEEEcCC------cCCCcccchhhhhhhhcccceEEEEEeecccccc----cccccc--ccCCCEEEEEECCEEE
Confidence            44567776      99999888777443      36788888877754    444555  6788984  5577643

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=94.52  E-value=0.017  Score=38.42  Aligned_cols=62  Identities=15%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      |.++|.-+.      -+.|..+|-+|+..|++|+++.++..... .+...........+|++..||..+
T Consensus         3 K~kL~yf~~------~~~~~~vR~~L~~~gi~ye~~~~~~~~~~-~~~~~~~~~p~g~lPvL~~~g~~l   64 (78)
T d1b48a2           3 KPKLYYFNG------RGRMESIRWLLAAAGVEFEEEFLETREQY-EKMQKDGHLLFGQVPLVEIDGMML   64 (78)
T ss_dssp             CCEEEBCSS------CTTTHHHHHHHHHHTCCCCCCBCCCHHHH-HHHHTTTCSSSSCSCEEEETTEEE
T ss_pred             CcEEEEcCC------chHHHHHHHHHHHcCCCcEEEEEcchhhh-cchhhcccccCCCCCEEEeCCeEE
Confidence            557777775      68999999999999999999888754432 222221121335689998766544

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.25  E-value=0.046  Score=38.50  Aligned_cols=75  Identities=16%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             chheeeeeeecccccCCCcchH------HHHHHH--------HhcCCceeEEEcCCCHH----HHHHHHHHhCCCCCCCc
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCL------KVKQIL--------RTHLVKFDDKDVFMSRE----TQQEFKERLGTDVINVP  162 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~------~~k~lL--------~~~~v~~~e~dv~~~~~----~~~el~~~~g~~~~~vP  162 (251)
                      ...|+||....     .|+-|-      ....+|        -.....|.++|+...++    ..+++.++.-...--.|
T Consensus         7 ~v~i~VYGA~~-----iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYP   81 (111)
T d1xg8a_           7 SNAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             CEEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             eeEEEEEcccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceee
Confidence            44688998885     788886      233333        22345688999976553    33344444322466789


Q ss_pred             eEEECCeeeC-ChHHHHHH
Q psy15946        163 QIFVEGVHIG-DADAIERL  180 (251)
Q Consensus       163 ~vfi~g~~iG-G~d~l~~l  180 (251)
                      .|.|+|+.|| |.-.|+..
T Consensus        82 lV~i~~eiVaEGnp~LK~I  100 (111)
T d1xg8a_          82 LITMNDEYVADGYIQTKQI  100 (111)
T ss_dssp             EEEETTEEEEESSCCHHHH
T ss_pred             EEEECCEEeecCCccHHHH
Confidence            9999999998 44444443

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.055  Score=38.82  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=35.1

Q ss_pred             CcchHHHHHHHHhc------CCceeEEEcCCCHHHHH---HHHHHhCCCCCCCceEEE--CCeeeC
Q psy15946        118 YHRCLKVKQILRTH------LVKFDDKDVFMSRETQQ---EFKERLGTDVINVPQIFV--EGVHIG  172 (251)
Q Consensus       118 c~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~---el~~~~g~~~~~vP~vfi--~g~~iG  172 (251)
                      |++|.++...+++.      .+.|..+|+...++..+   .+.+..+  ...+|.+.+  +|+.+.
T Consensus        40 C~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~--V~~iPT~i~~~~g~~l~  103 (119)
T d1woua_          40 CPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK--VTAVPTLLKYGTPQKLV  103 (119)
T ss_dssp             CHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC--CCSSSEEEETTSSCEEE
T ss_pred             ChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC--eEEEEEEEEEECCeEEe
Confidence            99999988887554      24567788866554433   3556665  789999642  455443

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.18  E-value=0.012  Score=40.32  Aligned_cols=64  Identities=16%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             ccCCCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         20 EKEAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        20 ~~~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      +.+|+++++|.-+.      -..+..+|-+|+..|++|+.+.++......+............+|.+.++
T Consensus         2 ~~~M~~~~L~Y~~~------~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~   65 (87)
T d2fnoa2           2 EDGMNTFDLYYWPV------PFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDR   65 (87)
T ss_dssp             TTSCBSEEEECCSS------SSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEET
T ss_pred             CCCCCCeEEEECCC------CcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEec
Confidence            45788999999984      67899999999999999998776543332221111111234667888875

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.15  E-value=0.0076  Score=45.69  Aligned_cols=49  Identities=14%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCceeEEE-cCCCHHHHHHH------HHHhCCCCCCCceEEECCeeeC
Q psy15946        122 LKVKQILRTHLVKFDDKD-VFMSRETQQEF------KERLGTDVINVPQIFVEGVHIG  172 (251)
Q Consensus       122 ~~~k~lL~~~~v~~~e~d-v~~~~~~~~el------~~~~g~~~~~vP~vfi~g~~iG  172 (251)
                      ..+..++...|++-...+ ...+++.++.+      .+..|  ...+|.+||||+|+-
T Consensus       104 ~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~g--i~gTPt~~InGk~~v  159 (181)
T d1beda_         104 QELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSG--LTGVPAVVVNNRYLV  159 (181)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT--CCSSSEEEETTTEEE
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhC--CccccEEEECCEEee
Confidence            566777777777532222 12333333333      33344  778999999999763

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.09  E-value=0.081  Score=37.32  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -|+.|+++|      |++|+.+...|++.     ++.+..+|++.+.   .++.+.+  +..++|.+.+
T Consensus        28 vvv~f~a~w------C~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~---~~l~~~~--~V~~~Pt~~~   85 (112)
T d1f9ma_          28 VVLDMFTQW------CGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN---KTLAKEL--GIRVVPTFKI   85 (112)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSTT---HHHHHHH--CCSSSSEEEE
T ss_pred             EEEEEEcCC------CcchHHHHHHHhhhccccccceeecccccccc---hhhHhhe--eeccCCEEEE
Confidence            455588887      99999999888863     4556666765421   2344556  5678999864

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.08  E-value=0.023  Score=37.71  Aligned_cols=41  Identities=20%  Similarity=0.645  Sum_probs=31.1

Q ss_pred             CccccccCCcce---------------eeCCCCCCCceeeecccccccccceeCCCCCcccccc
Q psy15946        199 CTICQVCGGYRL---------------LPCSLCNGSKKSVHRNHFTTELVALKCMNCDEVGLVK  247 (251)
Q Consensus       199 ~~~C~~Cgg~~~---------------~~C~~C~gs~k~~~~~~~~~~~~~~~C~~Cnengl~~  247 (251)
                      ...|..|+|+|+               .+|+.|+|+-+++.        ..-+|+.|+-.|.++
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~v~   73 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--------PKDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--------TTSBCSSSTTSCEEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC--------CCCCCCCCCCeeEeC
Confidence            457999999885               46999999977631        123799999888764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.01  E-value=0.044  Score=38.92  Aligned_cols=55  Identities=16%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVH  170 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~  170 (251)
                      |+.|+++|      |+.|..++..|++.     ++.|..+|++.+++    +.+..|  ...+|.+  |-+|+.
T Consensus        30 vv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~--V~~~Pt~~~~~~G~~   91 (113)
T d1r26a_          30 VAWFTAVW------CGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCR--VLQLPTFIIARSGKM   91 (113)
T ss_dssp             EEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEEECCC------Cccchhhceeccccccccccccccccccccchh----hHHHcc--ccCCCEEEEEECCEE
Confidence            45578887      99999999888663     67788889887754    455555  7788884  667853

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=93.90  E-value=0.099  Score=34.28  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ..+|.-.+      -..++.+|-+|+..|++|+++.+..+.  ..+.+...  ....+|.+.+||.-|.....+.+.
T Consensus         3 ~~L~yf~~------~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~--p~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           3 YTLHYFPL------MGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATM--YSNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             EEEEECSS------SGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGS--GGGSSCEEEETTEEECCHHHHHHH
T ss_pred             EEEEecCC------chhHHHHHHHHHHcCCCchhhcccccc--chhhhhcc--ccCCcCEEEECCeeeecHHHHHHH
Confidence            34555553      468999999999999999999886553  34444443  356899999999998887766654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=93.81  E-value=0.061  Score=37.19  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=39.6

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|++.      .+.+..+|++.++..    .+..+  ...+|.+  |-+|+.+
T Consensus        21 vv~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~--V~~~Pt~~~~~~G~~~   84 (105)
T d1nw2a_          21 LVDFWAAW------CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQFG--IMSIPTLILFKGGEPV   84 (105)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTT--CCBSSEEEEEETTEEE
T ss_pred             EEEEECCC------CCCcccccchhhhhhhhcCCceEEEEEECCCCccc----HHHCC--cceeeEEEEEECCEEE
Confidence            45577776      99999888777543      366788898877655    34454  7789985  6678643

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.72  E-value=0.059  Score=37.79  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcC------CccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~------v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      |+-|.++|      |++|++.+..|++..      +.+..+|++.+++    +.+.+  +...+|.+++
T Consensus        29 lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~--~V~~~Pt~~~   85 (111)
T d1xwaa_          29 VLDFFATW------CGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEY--NISSMPTFVF   85 (111)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHT--TCCSSSEEEE
T ss_pred             EEEEECCc------ccCccccchhHHHHhhhcccceEEEEEEeecCcc----hhhcC--CCccccEEEE
Confidence            33499998      999999999887642      3455566666655    44555  5677898864

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.064  Score=37.68  Aligned_cols=58  Identities=10%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHH-------Hc-CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILR-------TH-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~-------~~-~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-++.|.++|      |++|++....+.       .. .+.+..+|+..+.+.-.++.+..  +...+|.+++
T Consensus        23 K~vlv~F~a~w------C~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~v~~~Pt~~~   88 (117)
T d2fwha1          23 KPVMLDLYADW------CVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHL--NVLGLPTILF   88 (117)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHT--TCCSSSEEEE
T ss_pred             CeEEEEEeccc------CCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhh--ehhhceEEEE
Confidence            35677788998      999999865542       11 34455667777777677777777  5677899864

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=93.61  E-value=0.25  Score=32.50  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=49.6

Q ss_pred             heeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        103 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       103 ~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      +.++|.-+.      -..++.+|-+|...||+|+++.+..... ..............+|.+.+||..|.....+.+.
T Consensus         3 k~kL~Yf~~------~grae~irl~L~~~gv~yed~~~~~~~~-~~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2           3 KPKLHYFNA------RGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             CCEEEEESS------STTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcEEEEcCC------cHHHHHHHHHHHHcCCCceEEEecchhh-hhhhcccccCCCCCCCEEEECCeEEEcHHHHHHH
Confidence            445665553      4678899999999999999888865433 3333333333456899999999988776665553

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.60  E-value=0.12  Score=34.37  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             hheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHH---HHHHHHHhCCCCCCCceEEECCeeeCChHHHH
Q psy15946        102 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRET---QQEFKERLGTDVINVPQIFVEGVHIGDADAIE  178 (251)
Q Consensus       102 ~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~---~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~  178 (251)
                      +++++|.-+.      -..++.+|-+|+..|++|+++.++.+...   ..............+|.+-++|..+.....+.
T Consensus         3 ~~i~L~Y~~~------~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~   76 (85)
T d1okta2           3 DNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIV   76 (85)
T ss_dssp             CCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHH
T ss_pred             CCeEEEEcCC------chhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHH
Confidence            4678876663      45788999999999999998877654322   22222222234578999999999887766555


Q ss_pred             HH
Q psy15946        179 RL  180 (251)
Q Consensus       179 ~l  180 (251)
                      +.
T Consensus        77 ~y   78 (85)
T d1okta2          77 RY   78 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.058  Score=38.69  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=32.5

Q ss_pred             CchHHHHHHHHHHc------CCccceeeccCCHHHHH---HHHHHhCCCCCCCCcee
Q psy15946         40 YHRCLKVKQILRTH------LVKFDDKDVFMSRETQQ---EFKERLGTDVINVPQIF   87 (251)
Q Consensus        40 C~~C~~~k~~L~~~------~v~~~e~dv~~d~~~~~---el~~~~g~g~~~vP~i~   87 (251)
                      |++|+++.-.+.+.      .+.|..+|++..++..+   .+.+.+  +..++|+++
T Consensus        40 C~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~--~V~~iPT~i   94 (119)
T d1woua_          40 CPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL--KVTAVPTLL   94 (119)
T ss_dssp             CHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH--CCCSSSEEE
T ss_pred             ChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhC--CeEEEEEEE
Confidence            99999999998763      25567778866555433   355556  578899985

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=93.58  E-value=0.053  Score=35.73  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             EEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         26 IVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        26 vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      .++|..+.      -+.+..+|-+|+..|++|+.+.++...... ............+|++..+|..+
T Consensus         2 pkL~yf~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~-~~~~~~~~p~g~lPvL~~~g~~l   62 (77)
T d1gula2           2 PKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKEQLY-KLQDGNHLLFQQVPMVEIDGMKL   62 (77)
T ss_dssp             CEEEEESS------CTTTHHHHHHHHHTTCCCEEEEECSHHHHH-HHHHTTCSTTSCSCEEEETTEEE
T ss_pred             CEEEEcCC------cchHHHHHHHHHHcCCCceEEeeccccccc-hhhhcccCCCCCCCEEEECCEee
Confidence            35566563      688999999999999999988776544322 22222111345689998776544

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=93.58  E-value=0.058  Score=35.49  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +.++|.-+.      =+.|+.+|-+|+..|++|+++.+..+..  .++++..  ....+|++..+|..+
T Consensus         2 ~~~L~yf~~------~g~~~~iRl~L~~~gi~ye~~~~~~~~~--~~~~~~~--p~g~lPvL~~~g~~i   60 (75)
T d2gsqa2           2 KYTLHYFPL------MGRAELCRFVLAAHGEEFTDRVVEMADW--PNLKATM--YSNAMPVLDIDGTKM   60 (75)
T ss_dssp             CEEEEECSS------SGGGHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGS--GGGSSCEEEETTEEE
T ss_pred             CEEEEecCC------chhHHHHHHHHHHcCCCchhhccccccc--hhhhhcc--ccCCcCEEEECCeee
Confidence            567777774      4789999999999999999988875543  3444433  345799998876554

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.55  E-value=0.076  Score=37.50  Aligned_cols=55  Identities=15%  Similarity=0.203  Sum_probs=38.3

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +.|+++|      |+.|..+...|++.     ++.+..+|++.+++.    .+..+  ...+|.+  |-+|+.+
T Consensus        33 v~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l----~~~~~--V~~~Pt~~~~~~G~~v   94 (114)
T d1xfla_          33 VDFTASW------CGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSV----ASDWA--IQAMPTFMFLKEGKIL   94 (114)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHH----HHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEcCC------CCCccccccchhhhcccccccceeEEEeeeceee----ccccc--eeeeEEEEEEECCEEE
Confidence            3477787      99999888777553     455777788777654    34454  7789984  5678654

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.27  E-value=0.15  Score=33.84  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=43.3

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHH--HHhC-CCCCCCCceeeecccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFK--ERLG-TDVINVPQIFVEGVHI   93 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~--~~~g-~g~~~vP~i~i~g~~~   93 (251)
                      +++++|--+.      -..++.+|-+|+..+++|+.+.++.+.....+..  ...+ .....+|++..+|..+
T Consensus         3 ~~i~L~Y~~~------~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l   69 (85)
T d1okta2           3 DNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLIL   69 (85)
T ss_dssp             CCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEE
T ss_pred             CCeEEEEcCC------chhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEE
Confidence            4788976664      5789999999999999999988776543222222  1222 1345689998876543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.83  E-value=0.3  Score=33.36  Aligned_cols=56  Identities=18%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i  171 (251)
                      |+.|+++|      |+.|..+...|++.     ++.+..+|++.+++    +.+..+  ...+|.  +|.+|+.+
T Consensus        22 vv~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~--V~~~Pt~i~~k~G~~v   84 (103)
T d1syra_          22 IVDFFAEW------CGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKEN--ITSMPTFKVYKNGSSV   84 (103)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEeCCc------ccCcccccccchhhhhcccceEEEeeccccCcc----eeeeee--eecceEEEEEECCEEE
Confidence            34477776      99999888776543     45577788877754    445555  788998  46688744

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=92.78  E-value=0.14  Score=35.87  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      |+-|+++|      |+.|..+...|++.     ++.+..+|++.+++..    ...+  ...+|.+  |-+|+.+
T Consensus        30 vv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~----~~~~--I~~~Pt~~~~k~G~~v   92 (113)
T d1ti3a_          30 VVDFTASW------CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVA----EEWN--VEAMPTFIFLKDGKLV   92 (113)
T ss_dssp             EEEEECSS------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHH----HHHH--CSSTTEEEEEETTEEE
T ss_pred             EEEEEcCc------cccchhhhhhhhhhhccCCCceEEeeeeecccccc----ccCe--ecccceEEEEECCEEE
Confidence            34477787      99999888777543     3456777887776543    3443  6788984  6688643

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=92.78  E-value=0.099  Score=36.16  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=37.9

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      ++.|+++|      |++|..+...+.+.      .+.+..+|++.+++    +.+..+  ...+|.+  |-+|+.+
T Consensus        23 lv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~--V~~~Pt~~~~~~G~~v   86 (107)
T d1dbya_          23 LVDFWAPW------CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYG--IRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHT--CCSSCEEEEESSSSEE
T ss_pred             EEEEECCC------CCCccccChHHHHHHHhhcccceEEEEecccchh----HHHHhc--ccceEEEEEEECCeEE
Confidence            34477787      99999888766443      34567778877754    445565  7889985  4566544

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.52  E-value=0.16  Score=35.64  Aligned_cols=68  Identities=18%  Similarity=0.331  Sum_probs=45.2

Q ss_pred             CCeEEEEeecCCCCCCCCchH------HHHHHHHHH--------cCCccceeeccCCHH----HHHHHHHHhCCCCCCCC
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRC------LKVKQILRT--------HLVKFDDKDVFMSRE----TQQEFKERLGTDVINVP   84 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C------~~~k~~L~~--------~~v~~~e~dv~~d~~----~~~el~~~~g~g~~~vP   84 (251)
                      ...|+||++.-     .|+.|      +..-+||+.        +.+.|+++||...++    ..+++.+..-....-.|
T Consensus         7 ~v~i~VYGA~~-----iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYP   81 (111)
T d1xg8a_           7 SNAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             CEEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             eeEEEEEcccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceee
Confidence            45899999997     89888      445566654        346788999977664    33344433322455679


Q ss_pred             ceeeecccccc
Q psy15946         85 QIFVEGVHIGT   95 (251)
Q Consensus        85 ~i~i~g~~~gG   95 (251)
                      .+.++|+.++.
T Consensus        82 lV~i~~eiVaE   92 (111)
T d1xg8a_          82 LITMNDEYVAD   92 (111)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEeec
Confidence            99999988753

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.48  E-value=0.14  Score=37.95  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             HHHHHhCCCCCCCceEEE-CCeeeCChH
Q psy15946        149 EFKERLGTDVINVPQIFV-EGVHIGDAD  175 (251)
Q Consensus       149 el~~~~g~~~~~vP~vfi-~g~~iGG~d  175 (251)
                      ++-+.+|  ....|.+|+ ||+.|-|+-
T Consensus       112 ~la~~lG--v~GTPt~~~~nG~~i~G~~  137 (150)
T d1t3ba1         112 ELGIQFG--VRGTPSIVTSTGELIGGYL  137 (150)
T ss_dssp             HHHHHHT--CCSSCEEECTTSCCCCSCC
T ss_pred             HHHHhcC--cCCCCEEEEcCCcEecCCC
Confidence            4455566  788999887 889998853

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.13  Score=33.91  Aligned_cols=55  Identities=9%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      |.+.++|+.+       =+....++-+++..+++|+.++....   .+++.++.  ....+|++..+
T Consensus         1 Ms~~tLY~~~-------~~rs~~~~~~l~~~~~d~~~~~~~~~---~~~~~~~n--P~gkVP~L~~~   55 (75)
T d1nhya2           1 MSQGTLYANF-------RIRTWVPRGLVKALKLDVKVVTPDAA---AEQFARDF--PLKKVPAFVGP   55 (75)
T ss_dssp             CTTCEEECCS-------SHHHHHHHHHHHHHTCCCEEECGGGC---HHHHHHHC--TTCCSSEEECG
T ss_pred             CCCeEEecCC-------CchHHHHHHHHHhcCccccccCcccC---CHHHHHhC--cCCCCCeEEeC
Confidence            5677899987       35688899999999999987765543   34677775  46779999753

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=92.10  E-value=0.12  Score=34.19  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=41.5

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      +.++|.-+.      =..++.+|-+|+..|++|+++.+...... .+...........+|++..+|..+
T Consensus         3 k~kL~Yf~~------~grae~irl~L~~~gv~yed~~~~~~~~~-~~~~~~~~~p~g~lPvl~~~g~~l   64 (79)
T d1k3ya2           3 KPKLHYFNA------RGRMESTRWLLAAAGVEFEEKFIKSAEDL-DKLRNDGYLMFQQVPMVEIDGMKL   64 (79)
T ss_dssp             CCEEEEESS------STTTHHHHHHHHHHTCCCEEEEECSHHHH-HHHHHTTCCTTSCSCEEEETTEEE
T ss_pred             CcEEEEcCC------cHHHHHHHHHHHHcCCCceEEEecchhhh-hhhcccccCCCCCCCEEEECCeEE
Confidence            445665554      47899999999999999998888754432 233322222345799998876544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.15  Score=35.22  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=38.7

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhc-----CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~-----~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +-|+++|      |+.|..+...|.+.     ++.+..+|++.+++.    .+..+  ...+|.+  |-+|+.+
T Consensus        25 v~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~----~~~~~--V~~~Pt~~~~~~G~~v   86 (105)
T d2ifqa1          25 VDFSATW------CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV----ASECE--VKCMPTFQFFKKGQKV   86 (105)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT--CCBSSEEEEEETTEEE
T ss_pred             EEEEcCC------ccchhhhhhhhhhhccccccceeeecccccCHhH----HHHcC--ceEEEEEEEEECCEEE
Confidence            4477887      99999888877554     345677888877654    34444  7889984  6678654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=91.93  E-value=0.23  Score=33.90  Aligned_cols=55  Identities=9%  Similarity=0.196  Sum_probs=37.0

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +.|+++|      |+.|..+...+.+..      +.+..+|++.+++    +.+..+  ...+|.+  |-+|+.+
T Consensus        22 v~F~a~w------C~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~~--V~~~Pt~~~~~~G~~v   84 (104)
T d1fb6a_          22 VDFWAPW------CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYN--IRSIPTVLFFKNGERK   84 (104)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEEE
T ss_pred             EEEEcCc------cCCccccCchhHHHHHhhcCccceeEEecccchh----hhhhcc--eeeeeEEEEEEcCeEE
Confidence            4477777      999998888775542      3355567766654    555665  7889984  5677644

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.06  Score=38.07  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc---------CCccceeeccCCHHHHHHHHHHhCCCCCCCCcee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH---------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIF   87 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~---------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~   87 (251)
                      ..-+|.|.++|      |++|+++...+.+.         .+.+..+|++.+...    .+.+  +...+|.++
T Consensus        25 k~vlV~Fya~w------C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~--~i~~~Pt~~   86 (120)
T d1meka_          25 KYLLVEFYAPW------CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL----AQQY--GVRGYPTIK   86 (120)
T ss_dssp             SEEEEEEECSS------CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSS----HHHH--TCCSSSEEE
T ss_pred             CcEEEEEECCC------cCCccccchhhhhhcccccccccceeeeccccccchhH----HHHh--CCccCCeEE
Confidence            44677888998      99999887666542         255667777776653    3344  456789874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.22  Score=34.65  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=39.1

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHh----c-CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeeeC
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRT----H-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHIG  172 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~----~-~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~iG  172 (251)
                      +-|+++|      |+.|.++...|++    + ++.|..+|++.+++.    .+..+  ...+|.  +|-+|+.++
T Consensus        26 v~F~a~w------C~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l----~~~~~--v~~~Pt~~~~~~G~~v~   88 (107)
T d1gh2a_          26 VKFTMRG------CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT----AATNN--ISATPTFQFFRNKVRID   88 (107)
T ss_dssp             EEEECSS------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHTT--CCSSSEEEEEETTEEEE
T ss_pred             EEEECCC------CCCccccchhhhccccccccccccccccccchhh----hhhcC--ceeceEEEEEECCEEEE
Confidence            3377787      9999988877743    2 566778888877554    45555  778898  467887543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.11  Score=38.34  Aligned_cols=55  Identities=15%  Similarity=0.285  Sum_probs=40.0

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhc------CCceeEEEcCCCHHHHHHHHHHhCCCCCCCce--EEECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTH------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQ--IFVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~------~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~--vfi~g~~i  171 (251)
                      +-|+++|      |+.|.++..+|++.      .+.+..+|++.+++    +.+..+  ...+|.  +|.+|+++
T Consensus        27 v~F~a~w------C~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~~--I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          27 IRFGHDW------DPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYE--LYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             EEEECTT------SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSC--SCSSCEEEEEETTEEE
T ss_pred             EEEECCC------CccchhcChHHHHHHHHhhccceEEEeeccccch----hhhhcC--eeeEEEEEEEeCCcEE
Confidence            3478887      99999998888654      25677888877754    334443  778999  47889876

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.087  Score=39.82  Aligned_cols=51  Identities=16%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCceeEEEc-CCCHHHHHHHHHHh----CCCCCCCceEEECCeee
Q psy15946        121 CLKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHI  171 (251)
Q Consensus       121 C~~~k~lL~~~~v~~~e~dv-~~~~~~~~el~~~~----g~~~~~vP~vfi~g~~i  171 (251)
                      =..+..++...++.-..++- ..++++.+.+....    ..+...+|.+||||+|+
T Consensus       105 ~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~gI~gTPt~vInGky~  160 (188)
T d1fvka_         105 ASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQ  160 (188)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEE
T ss_pred             HHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHcCCccccEEEECCEEE
Confidence            35667777777764322221 12333333333221    12478899999999873

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.031  Score=41.12  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             CCCeEEE--EeecCCCCCCCCchHHHHHHHHHHcCCccceeec---cCCHHHHHHHHHHhCCCCCCCCceee--ecccc
Q psy15946         22 EAGKIVM--YSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDV---FMSRETQQEFKERLGTDVINVPQIFV--EGVHI   93 (251)
Q Consensus        22 ~~~~vvv--yt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv---~~d~~~~~el~~~~g~g~~~vP~i~i--~g~~~   93 (251)
                      ..+++++  |.++|      ||.|..+.-+|.+..-.|...++   ..|.+...++.+.+  +..++|.+++  +|+.+
T Consensus        34 ~~~~vVll~f~a~w------Cp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~--~V~~~PT~~~~~~G~~v  104 (132)
T d2hfda1          34 APDGVVLLSSDPKR------TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRF--GVFRFPATLVFTGGNYR  104 (132)
T ss_dssp             CSEEEEEECSCCSC------CSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHH--TCCSCCEEEEEETTEEE
T ss_pred             CCCcEEEEEeeCCC------ChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhh--ccCcceeEEEEEcCcEe
Confidence            3445655  45677      99999988888885433322111   22334445677777  5788998854  44443

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.60  E-value=0.21  Score=32.71  Aligned_cols=61  Identities=10%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      +...||.-+.      -..+..+|-+|...+++|+.+.++.+.  ..+++...  ....+|.+.++|..+.
T Consensus         2 ~s~kL~Yf~~------~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~--p~g~lP~l~~~g~~l~   62 (76)
T d1m0ua2           2 HSYTLFYFNV------KALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTM--PMGQMPVLEVDGKRVH   62 (76)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGS--GGGCSCEEEETTEEEE
T ss_pred             ccEEEEecCC------chHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccC--cCCCCcEEEECCcccc
Confidence            3566766664      567899999999999999988877543  23444433  3456999988876543

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.47  E-value=0.3  Score=34.11  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             CCcchHHHHHHHH----hcCCceeEEEcCC--CHHHHHHHHHHhCCCCCCCceEE--ECCe
Q psy15946        117 TYHRCLKVKQILR----THLVKFDDKDVFM--SRETQQEFKERLGTDVINVPQIF--VEGV  169 (251)
Q Consensus       117 tc~~C~~~k~lL~----~~~v~~~e~dv~~--~~~~~~el~~~~g~~~~~vP~vf--i~g~  169 (251)
                      +|++|.++...|.    .++.++..+++..  +.+..+.+.+..+  ..++|.++  =+|+
T Consensus        37 ~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--V~~~PTli~~~~gk   95 (115)
T d1zmaa1          37 TCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG--IPTVPGFVHITDGQ   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT--CCSSCEEEEEETTE
T ss_pred             CCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccc--cccccEEEEEECCE
Confidence            4999998777664    4555666667753  3344445666665  78999963  3555

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.32  E-value=0.035  Score=42.04  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=36.6

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeec
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g   90 (251)
                      -.|++|+.+|      ||+|.+..-.|.+.     .+.+..++++.+++.   +.+..-.+...+|.+++.+
T Consensus        56 ~~~l~~~~tW------C~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~---~~~~~~~~~~~~p~~~~~d  118 (166)
T d1z6na1          56 YRLLVAGEMW------CPDCQINLAALDFAQRLQPNIELAIISKGRAEDD---LRQRLALERIAIPLVLVLD  118 (166)
T ss_dssp             EEEEEECCTT------CHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHH---TTTTTTCSSCCSSEEEEEC
T ss_pred             eEEEEEEeCc------CccHHHHHHHHHHHHHHCCCCcEEEEECccCHHH---HHHHHHhccccccceeecC
Confidence            4689999998      99999988888774     244555555544332   2222222456667776544

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.18  E-value=0.068  Score=39.87  Aligned_cols=24  Identities=13%  Similarity=0.090  Sum_probs=19.1

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT   52 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~   52 (251)
                      ..+|++|+-..      ||+|.+.-..+..
T Consensus        25 ~v~I~ef~d~~------Cp~C~~~~~~~~~   48 (172)
T d1z6ma1          25 PVKMIEFINVR------CPYCRKWFEESEE   48 (172)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHH
T ss_pred             CEEEEEEECCC------CHhHHHHHHHHhh
Confidence            34788899996      9999998777654

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=89.91  E-value=0.43  Score=31.12  Aligned_cols=59  Identities=20%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      -..++.+|-+|+..|++|+++.+..+  ...+.+...  ....+|.+.+||..|.....+.+.
T Consensus        12 ~gr~e~vR~~L~~~gi~ye~~~~~~~--~~~~~~~~~--p~g~lPvL~~~g~~i~qS~AI~~y   70 (77)
T d1tw9a2          12 RGAGECARQVFALADQKYEDVRLTQE--TFVPLKATF--PFGQVPVLEVDGQQLAQSQAICRY   70 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECHH--HHGGGGGGS--TTSCSCEEEETTEEEECHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCceeeecccc--cchhhhhhc--ccCCCCEEEECCEEEEcHHHHHHH
Confidence            46789999999999999998887532  333333333  467899999999998876665553

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.71  E-value=0.064  Score=38.52  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=32.4

Q ss_pred             CCCeEEEE--eecCCCCCCCCchHHHHHHHHHHcCCccceee---ccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         22 EAGKIVMY--STTMGIVRDTYHRCLKVKQILRTHLVKFDDKD---VFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        22 ~~~~vvvy--t~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~d---v~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..+.++++  .++|      ||.|+.+.-.|.++.-.|...+   +..|.+...++.+.+  +..++|.+++
T Consensus        28 ~~~~~vll~f~a~w------Cp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~--~V~~~Pt~~~   91 (119)
T d2es7a1          28 VGDGVILLSSDPRR------TPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRF--NVRRFPATLV   91 (119)
T ss_dssp             CCSEEEEECCCSCC----------CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTT--TCCSSSEEEE
T ss_pred             CCCcEEEEeecCCC------CccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhc--CcCcceEEEE
Confidence            44555553  4677      9999999999887543332211   112334445677777  5788998864

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.68  E-value=0.24  Score=39.61  Aligned_cols=62  Identities=19%  Similarity=0.410  Sum_probs=40.2

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcC----C-cccee----------eccCCHHHHH---HHHHHhCCCCCCCCce
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHL----V-KFDDK----------DVFMSRETQQ---EFKERLGTDVINVPQI   86 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~----v-~~~e~----------dv~~d~~~~~---el~~~~g~g~~~vP~i   86 (251)
                      -|.+||..|      |+.|-.+-++|.++.    | .+..+          |-..+++.-+   .+....|....-.|++
T Consensus         8 VVElFTSqg------CssCPpAd~~L~~L~~~~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~   81 (225)
T d2axoa1           8 VVELFTSQG------CASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA   81 (225)
T ss_dssp             EEEEEECTT------CTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             EEEEeeCCC------CCCCHHHHHHHHHhhCCCCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeE
Confidence            588999998      999999999999852    1 11111          4444555432   2444444333456999


Q ss_pred             eeeccc
Q psy15946         87 FVEGVH   92 (251)
Q Consensus        87 ~i~g~~   92 (251)
                      +|+|+.
T Consensus        82 vvnG~~   87 (225)
T d2axoa1          82 ILNGRD   87 (225)
T ss_dssp             EETTTE
T ss_pred             EEeCcc
Confidence            999964

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.60  E-value=0.44  Score=31.03  Aligned_cols=59  Identities=12%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ...++.+|-+|...|++|+.+.++.+  ...+.+...  ....+|.+.+||..+.....+.+.
T Consensus        12 ~g~~e~iRl~L~~~gi~yed~~~~~~--~~~~~~~~~--p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2          12 KALAEPLRYLFAYGNQEYEDVRVTRD--EWPALKPTM--PMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             SGGGHHHHHHHHHHTCCCEEEEECTT--THHHHGGGS--GGGCSCEEEETTEEEECHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCCEEecCChh--hhhhhhccC--cCCCCcEEEECCcccccHHHHHHH
Confidence            34678999999999999998887654  233444443  367899999999988877666553

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.51  Score=32.20  Aligned_cols=54  Identities=15%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHhc----C--CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRTH----L--VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVH  170 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~~----~--v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~  170 (251)
                      +-|+++|      |++|..+...+...    .  +.+..+|++.++.    +.+..+  ...+|.+  |.+|+.
T Consensus        25 v~F~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~~--v~~~PT~~~~~~G~~   86 (108)
T d2trxa_          25 VDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG--IRGIPTLLLFKNGEV   86 (108)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEEECCC------CCCccccCcHHHHHHHHhhcceeeeeccccchhh----HHHHhC--CCcEEEEEEEECCEE
Confidence            4477787      99999777766432    2  3355667766643    555665  7889985  557863

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.05  E-value=1.1  Score=31.87  Aligned_cols=56  Identities=14%  Similarity=0.313  Sum_probs=37.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHc-----CCccceeeccCCHHHHHHHHHHhCCCCCCCCceeee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTH-----LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-----~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      ++++|+...     .|++|..++++|+..     .|.++++|.+.+.  ..++.+..  +...+|.+.+.
T Consensus        25 ~l~~~~~~~-----~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e--~~~~~~~~--~ver~Ps~~i~   85 (119)
T d1a8la1          25 KLIVFVRKD-----HCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE--GKELAKRY--RIDRAPATTIT   85 (119)
T ss_dssp             EEEEEECSS-----SCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH--HHHHHHHT--TCCSSSEEEEE
T ss_pred             EEEEEecCC-----CchhHHHHHHHHHHHHhhCCCeEEEEeccCcch--hhhHHHhh--ccccCceEEEe
Confidence            678887532     499999999999974     3566666665332  24444445  56778988774

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=88.70  E-value=0.64  Score=32.30  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             eeeeeecccccCCCcchHHHHHHHHh-----cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeee
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHI  171 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL~~-----~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~i  171 (251)
                      +.|+++|      |+.|..+...|++     .++.+..+|++..   ..+|.+..+  ...+|.+  |-+|+.+
T Consensus        30 v~f~a~w------C~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~---~~~l~~~~~--V~~~Pt~~~~k~G~~v   92 (112)
T d1f9ma_          30 LDMFTQW------CGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE---NKTLAKELG--IRVVPTFKILKENSVV   92 (112)
T ss_dssp             EEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSST---THHHHHHHC--CSSSSEEEEEETTEEE
T ss_pred             EEEEcCC------CcchHHHHHHHhhhccccccceeeccccccc---chhhHhhee--eccCCEEEEEECCEEE
Confidence            3366675      9999988888865     3455667777532   134555565  7789985  4477643

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.64  E-value=0.95  Score=31.04  Aligned_cols=53  Identities=17%  Similarity=0.193  Sum_probs=35.1

Q ss_pred             eeeeecccccCCCcchHHHHHHHHhcC------CceeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCee
Q psy15946        106 MYSTTMGIVRDTYHRCLKVKQILRTHL------VKFDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVH  170 (251)
Q Consensus       106 iyt~sl~~ir~tc~~C~~~k~lL~~~~------v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~  170 (251)
                      -|.++|      |+.|..+...|++..      +.+..+|++.+++    +.+..+  ...+|.+  |-+|+.
T Consensus        31 ~f~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~~--V~~~Pt~~~~~~G~~   91 (111)
T d1xwaa_          31 DFFATW------CGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYN--ISSMPTFVFLKNGVK   91 (111)
T ss_dssp             EEECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTT--CCSSSEEEEEETTEE
T ss_pred             EEECCc------ccCccccchhHHHHhhhcccceEEEEEEeecCcc----hhhcCC--CccccEEEEEECCEE
Confidence            378887      999998888775542      3455566666554    445555  6788885  456653

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=88.28  E-value=0.38  Score=31.42  Aligned_cols=50  Identities=16%  Similarity=0.168  Sum_probs=36.0

Q ss_pred             CchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccc
Q psy15946         40 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHI   93 (251)
Q Consensus        40 C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~   93 (251)
                      =..|+.+|-+|+..+++|+++.+..+.  ..+++...  ....+|.+.++|..+
T Consensus        12 ~gr~e~vR~~L~~~gi~ye~~~~~~~~--~~~~~~~~--p~g~lPvL~~~g~~i   61 (77)
T d1tw9a2          12 RGAGECARQVFALADQKYEDVRLTQET--FVPLKATF--PFGQVPVLEVDGQQL   61 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECHHH--HGGGGGGS--TTSCSCEEEETTEEE
T ss_pred             chHHHHHHHHHHHcCCCceeeeccccc--chhhhhhc--ccCCCCEEEECCEEE
Confidence            468999999999999999988876332  23333332  456799998876554

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=88.25  E-value=0.3  Score=31.95  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      ...++.+|-+|...|++|+++.+....  ..+.+...  ....+|.+.++|..|.....+.+.
T Consensus        11 ~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~--p~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2          11 RGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQF--QFGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGS--TTSCSCEEEETTEEEESHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCceeeeccccc--chhhcccC--CCCCCCEEEECCEEEEcHHHHHHH
Confidence            567899999999999999988775332  22333333  467999999999999887766654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.01  E-value=0.74  Score=32.69  Aligned_cols=55  Identities=15%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH-----cCCccceeeccCCHHHHHHHHHHhCCCCCCCCce
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT-----HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQI   86 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~-----~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i   86 (251)
                      ..-|+.|..+|      ||+|.+.-..|++     .++.+..++.+.+.+..+++.+..+   .+.|.+
T Consensus        25 k~vll~F~a~w------C~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~---~~~p~~   84 (134)
T d1lu4a_          25 KPAVLWFWTPW------CPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYN---LNFTNL   84 (134)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHT---CCSEEE
T ss_pred             CEEEEEEeecc------cCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhc---ccccee
Confidence            45677788887      9999997766654     3566666677777777767666653   345544

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.79  E-value=0.14  Score=37.24  Aligned_cols=54  Identities=9%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHHc-------CCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTH-------LVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~-------~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      .+-+|.|.++|      |++|+++...|++.       ...+...+++.+...    ...+  +..++|.+++
T Consensus        31 k~vlV~F~a~w------C~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~----~~~~--~v~~~Ptl~~   91 (140)
T d2b5ea1          31 KDVLVLYYAPW------CGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRGV--VIEGYPTIVL   91 (140)
T ss_dssp             CCEEEEEECTT------CHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC----CSSC--CCSSSSEEEE
T ss_pred             CCEEEEEEecc------CcccchhHHHHHHHHHHHhccccceEEEeeeccchh----cccc--ccccCCeEEE
Confidence            34678899998      99999998887763       233444455544432    2223  4577898865

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=87.41  E-value=0.86  Score=29.65  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      -..++.+|-+|+..|++|+++.++... +.....+.........+|.+..+|..+.....+.+.
T Consensus        10 rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ry   73 (80)
T d1duga2          10 KGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (80)
T ss_dssp             SGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             chhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHH
Confidence            466788999999999999998886543 222222222222456899999998888776665553

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=0.74  Score=34.36  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=24.3

Q ss_pred             CCeEEEEeecCCCCCCCCchHHHHHHHHHH----cCCccceeecc
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRCLKVKQILRT----HLVKFDDKDVF   63 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~----~~v~~~e~dv~   63 (251)
                      ..+|++|+-..      ||+|++.-..+++    ..+.+..+++.
T Consensus        37 ~~tv~vF~D~~------CP~C~~~~~~l~~l~~~~~v~v~~~~~~   75 (169)
T d1v58a1          37 PVIVYVFADPF------CPYCKQFWQQARPWVDSGKVQLRTLLVG   75 (169)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CEEEEEEECCC------CcchHHHHHHHHHHHhccceeEEEEecc
Confidence            44788898884      9999976555444    45667766664

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=87.18  E-value=0.23  Score=32.56  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             CchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeeccccc
Q psy15946         40 YHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        40 C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~g   94 (251)
                      -..|+.+|-+|+..|++|+++.+....  ..++++..  ....+|++..+|..+.
T Consensus        11 ~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~--p~g~lPvL~~~~~~l~   61 (77)
T d1tu7a2          11 RGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQF--QFGQLPCLYDGDQQIV   61 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGS--TTSCSCEEEETTEEEE
T ss_pred             cHHHHHHHHHHHHcCCCceeeeccccc--chhhcccC--CCCCCCEEEECCEEEE
Confidence            689999999999999999987765432  23333333  3467999988775543

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.03  E-value=0.57  Score=32.75  Aligned_cols=54  Identities=6%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             eeeeeeecccccCCCcchHHHHHHHHh-------cCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEE--CCe
Q psy15946        104 IVMYSTTMGIVRDTYHRCLKVKQILRT-------HLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV--EGV  169 (251)
Q Consensus       104 Vviyt~sl~~ir~tc~~C~~~k~lL~~-------~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi--~g~  169 (251)
                      +|.|+++|      |+.|.++...++.       .+|.+..+|++.+.    ++.+..+  ...+|.+++  +|+
T Consensus        31 lV~fya~w------C~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~----~l~~~~~--v~~~Pti~~f~~g~   93 (119)
T d2b5ea4          31 LAEFFAPW------CGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ----DLCMEHN--IPGFPSLKIFKNSD   93 (119)
T ss_dssp             EEEEECTT------CHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH----HHHHHTT--CCSSSEEEEEETTC
T ss_pred             EEEEECCc------cCcccccchhhhhhhhhhcccceeeeeeeccchH----HHHHHhc--cccCCeEEEEECCE
Confidence            56677776      9999987776543       24667788887764    3555554  788999754  663

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.22  E-value=0.13  Score=34.75  Aligned_cols=73  Identities=16%  Similarity=0.133  Sum_probs=45.6

Q ss_pred             cchheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEECC--eeeCChHHH
Q psy15946        100 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEG--VHIGDADAI  177 (251)
Q Consensus       100 ~~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~g--~~iGG~d~l  177 (251)
                      .+..+++|.-..      -..++.+|-+|+..|++|+.+.++.....+..-......+...+|.+.+++  ..|.-...+
T Consensus         4 ~M~~~~L~Y~~~------~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI   77 (87)
T d2fnoa2           4 GMNTFDLYYWPV------PFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAI   77 (87)
T ss_dssp             SCBSEEEECCSS------SSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHH
T ss_pred             CCCCeEEEECCC------CcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHH
Confidence            456678887773      467889999999999999887664332222211111113467899998853  345544443


Q ss_pred             H
Q psy15946        178 E  178 (251)
Q Consensus       178 ~  178 (251)
                      .
T Consensus        78 ~   78 (87)
T d2fnoa2          78 A   78 (87)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.86  E-value=1  Score=29.17  Aligned_cols=67  Identities=13%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             chheeeeeeecccccCCCcchHHHHHHHHhcCCceeEEEcCCCHHHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHH
Q psy15946        101 AGKIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIER  179 (251)
Q Consensus       101 ~~~Vviyt~sl~~ir~tc~~C~~~k~lL~~~~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~  179 (251)
                      |.+.++|++.       -.....++.+++..+++|+.++...   ..+++.+..  +...+|.+..+ |..+-....+..
T Consensus         1 Ms~~tLY~~~-------~~rs~~~~~~l~~~~~d~~~~~~~~---~~~~~~~~n--P~gkVP~L~~~~g~~l~ES~aI~~   68 (75)
T d1nhya2           1 MSQGTLYANF-------RIRTWVPRGLVKALKLDVKVVTPDA---AAEQFARDF--PLKKVPAFVGPKGYKLTEAMAINY   68 (75)
T ss_dssp             CTTCEEECCS-------SHHHHHHHHHHHHHTCCCEEECGGG---CHHHHHHHC--TTCCSSEEECGGGCEEESHHHHHH
T ss_pred             CCCeEEecCC-------CchHHHHHHHHHhcCccccccCccc---CCHHHHHhC--cCCCCCeEEeCCeeEecCHHHHHH
Confidence            3467788865       3456788999999999998876543   345677775  47899999764 677766655544

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=85.71  E-value=0.62  Score=30.43  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             cchHHHHHHHHhcCCceeEEEcCCCH-HHHHHHHHHhCCCCCCCceEEECCeeeCChHHHHH
Q psy15946        119 HRCLKVKQILRTHLVKFDDKDVFMSR-ETQQEFKERLGTDVINVPQIFVEGVHIGDADAIER  179 (251)
Q Consensus       119 ~~C~~~k~lL~~~~v~~~e~dv~~~~-~~~~el~~~~g~~~~~vP~vfi~g~~iGG~d~l~~  179 (251)
                      ..++.+|-+|+..|++|+.+.++.+. +.....+...+.....+|.+..+|..|.....+.+
T Consensus        11 grae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~   72 (80)
T d1fhea2          11 GLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMR   72 (80)
T ss_dssp             TTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHH
T ss_pred             hHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHH
Confidence            56789999999999999999887652 11111111112246678988888877765444433

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=85.67  E-value=0.06  Score=35.77  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HHHH-HHHHHHhCCCCCCCCceeeec
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RETQ-QEFKERLGTDVINVPQIFVEG   90 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~~~-~el~~~~g~g~~~vP~i~i~g   90 (251)
                      .+|..+.     +|  +.+++-+|+.+|++|+.+.|+..  .+.+ +++.++.  ....+|++.+++
T Consensus         2 kLY~~p~-----s~--s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~~   59 (80)
T d1pmta2           2 KLYYTPG-----SC--SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAIN--PKGQVPVLQLDN   59 (80)
T ss_dssp             EEEECTT-----ST--THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTC--TTCCSCEEECTT
T ss_pred             EEEeCCC-----Ch--HHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhc--ccccCCceecCC
Confidence            4687774     44  58999999999999987776543  2222 3455553  456799998653

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=85.19  E-value=0.75  Score=31.68  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=37.0

Q ss_pred             eeeeeecccccCCCcchHHHHHHH-------Hhc-CCceeEEEcCCCHHHHHHHHHHhCCCCCCCceE-EEC
Q psy15946        105 VMYSTTMGIVRDTYHRCLKVKQIL-------RTH-LVKFDDKDVFMSRETQQEFKERLGTDVINVPQI-FVE  167 (251)
Q Consensus       105 viyt~sl~~ir~tc~~C~~~k~lL-------~~~-~v~~~e~dv~~~~~~~~el~~~~g~~~~~vP~v-fi~  167 (251)
                      +.|..+|      |++|..+...+       +.. .+.+..+|+..+.....+|.+..+  ...+|.+ |++
T Consensus        27 v~F~a~w------C~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~Pt~~~~~   90 (117)
T d2fwha1          27 LDLYADW------CVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN--VLGLPTILFFD   90 (117)
T ss_dssp             EEEECTT------CHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT--CCSSSEEEEEC
T ss_pred             EEEeccc------CCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhe--hhhceEEEEEe
Confidence            4466676      99999876543       212 344566777777777777877776  7788985 454

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=84.89  E-value=0.24  Score=32.60  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=40.7

Q ss_pred             chHHHHHHHHhcCCceeEEEcCCC--HHHH-HHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHH
Q psy15946        120 RCLKVKQILRTHLVKFDDKDVFMS--RETQ-QEFKERLGTDVINVPQIFVE-GVHIGDADAIERLN  181 (251)
Q Consensus       120 ~C~~~k~lL~~~~v~~~e~dv~~~--~~~~-~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~  181 (251)
                      .+.+++-+|+..|++|+.+.|+..  .+.+ .++.++.  ....+|.+.++ |..+-....+.+..
T Consensus        10 ~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~~g~~l~ES~aI~~yL   73 (80)
T d1pmta2          10 CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAIN--PKGQVPVLQLDNGDILTEGVAIVQYL   73 (80)
T ss_dssp             TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTC--TTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhc--ccccCCceecCCCcEEeCHHHHHHHH
Confidence            357999999999999987766543  2222 3355554  47899999875 57776655555543

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.34  E-value=0.85  Score=32.01  Aligned_cols=54  Identities=17%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             CCeEEEEeecCCCCCCCCchH------HHHHHHHH-------HcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         23 AGKIVMYSTTMGIVRDTYHRC------LKVKQILR-------THLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        23 ~~~vvvyt~~~~~~~~~C~~C------~~~k~~L~-------~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      ..-+|.|.++|      |+.|      .++...++       ..+|.+..+|.+.+++    +.+.+  +....|++++
T Consensus        29 ~~~~V~Fyapw------C~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~----l~~~~--~I~~yPTi~~   95 (124)
T d1a8ya1          29 EVLALLYHEPP------EDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA----VAKKL--GLTEEDSIYV   95 (124)
T ss_dssp             SEEEEEEECCC------CSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH----HHHTT--TCCSTTCEEE
T ss_pred             CeEEEEEECCC------ccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccc----hhhcc--ccccCCcEEE
Confidence            34689999998      9864      33333333       3457888889888876    44444  4667888864

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=83.93  E-value=0.21  Score=36.35  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CcchHHHHHHHHhcCCceeEEE---cCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKD---VFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG  172 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~d---v~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG  172 (251)
                      |+.|..+.-+|.++--.|.-++   ...|.+...+|.+..+  ...+|.+  |-+|+.++
T Consensus        48 Cp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~--V~~~PT~~~~~~G~~v~  105 (132)
T d2hfda1          48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG--VFRFPATLVFTGGNYRG  105 (132)
T ss_dssp             CSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHT--CCSCCEEEEEETTEEEE
T ss_pred             ChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhc--cCcceeEEEEEcCcEee
Confidence            9999988888776533321110   0123345567777776  7889985  55888665

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=82.91  E-value=0.22  Score=32.84  Aligned_cols=54  Identities=15%  Similarity=0.217  Sum_probs=37.7

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCC--HH-HHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMS--RE-TQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d--~~-~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .+|..+.     +|  ..+++-+|+.+|++|+.+.++..  .+ ..+++.++.  ....+|++..+
T Consensus         2 kLY~~p~-----s~--s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~d   58 (80)
T d1f2ea2           2 KLFISPG-----AC--SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVN--PSGKVPALTLD   58 (80)
T ss_dssp             EEEECTT-----ST--THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHC--TTCCSCEEECT
T ss_pred             EEecCCC-----ch--HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHh--hccccceEEEC
Confidence            4677764     45  46899999999999988776542  22 234577664  45679999764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.88  E-value=0.22  Score=35.43  Aligned_cols=51  Identities=16%  Similarity=0.227  Sum_probs=26.5

Q ss_pred             CcchHHHHHHHHhcCCc-----eeEEEcCCCHHHHHHHHHHhCCCCCCCceE--EECCeeeC
Q psy15946        118 YHRCLKVKQILRTHLVK-----FDDKDVFMSRETQQEFKERLGTDVINVPQI--FVEGVHIG  172 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~-----~~e~dv~~~~~~~~el~~~~g~~~~~vP~v--fi~g~~iG  172 (251)
                      |+.|..+..+|.++.-.     +....|  |.+...++.+..|  ...+|.+  |-+|+.++
T Consensus        42 Cp~C~~~~pvl~eL~~~~~~~~~~~~~V--d~d~~~~l~~~~~--V~~~Pt~~~~~~G~~v~   99 (119)
T d2es7a1          42 TPEVSDNPVMIAELLREFPQFDWQVAVA--DLEQSEAIGDRFN--VRRFPATLVFTDGKLRG   99 (119)
T ss_dssp             ----CCHHHHHHHHHHTCTTSCCEEEEE--CHHHHHHHHHTTT--CCSSSEEEEESCC----
T ss_pred             CccHHHHHHHHHHHHHhcCCCceEEEEE--ECCCCHHHHHhcC--cCcceEEEEEEcCeEEE
Confidence            99999888887665333     222222  3345566777776  7889985  55676554

>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=82.18  E-value=1.1  Score=29.13  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=40.9

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceeeecccccccc
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFVEGVHIGTWQ   97 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i~g~~~gG~~   97 (251)
                      ++.+|--+.      =..+..+|-+|+..|++|+++.++.+..  .+++...  ....+|...+.....+|..
T Consensus         2 ~~kL~Y~~~------rgr~e~iR~lL~~~gv~ye~~~~~~~~~--~~~k~~~--~~~~lP~~~~p~l~~~~~~   64 (81)
T d1oe8a2           2 HIKVIYFNG------RGRAESIRMTLVAAGVNYEDERISFQDW--PKIKPTI--PGGRLPAVKITDNHGHVKW   64 (81)
T ss_dssp             EEEEEESCT------TSTTHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGS--TTSCSCEEEEECTTCCEEE
T ss_pred             CEEEEeCCC------chHHHHHHHHHHHcCCCceeEeccchhh--HHhhhcc--cccCCCcccCCccccCCEE
Confidence            455555453      3689999999999999999887765432  2233222  2345788887765555533

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=82.11  E-value=0.58  Score=30.59  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=42.1

Q ss_pred             hHHHHHHHHhcCCceeEEEcCCC--H-HHHHHHHHHhCCCCCCCceEEEC-CeeeCChHHHHHHH
Q psy15946        121 CLKVKQILRTHLVKFDDKDVFMS--R-ETQQEFKERLGTDVINVPQIFVE-GVHIGDADAIERLN  181 (251)
Q Consensus       121 C~~~k~lL~~~~v~~~e~dv~~~--~-~~~~el~~~~g~~~~~vP~vfi~-g~~iGG~d~l~~l~  181 (251)
                      ..+++-+|+..|++|+.+.+...  . ...+++.++.  ....+|.+.++ |..|.....+.+..
T Consensus        11 s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~d~g~~l~ES~aI~~yL   73 (80)
T d1f2ea2          11 SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVN--PSGKVPALTLDSGETLTENPAILLYI   73 (80)
T ss_dssp             THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHC--TTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHh--hccccceEEECCCeEEecHHHHHHHH
Confidence            46888999999999988776432  2 2235677775  37799999864 77887777666543

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=82.03  E-value=2.5  Score=29.68  Aligned_cols=47  Identities=11%  Similarity=0.024  Sum_probs=32.4

Q ss_pred             CeEEEEeecCCCCCCCCchHHHHHHHHHH---cCCccceeeccCCHHHHHHHHHHh
Q psy15946         24 GKIVMYSTTMGIVRDTYHRCLKVKQILRT---HLVKFDDKDVFMSRETQQEFKERL   76 (251)
Q Consensus        24 ~~vvvyt~~~~~~~~~C~~C~~~k~~L~~---~~v~~~e~dv~~d~~~~~el~~~~   76 (251)
                      .-|+-|.++|      |++|.+....|++   .++.+..++++.+...........
T Consensus        22 ~vvl~FwatW------C~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~   71 (136)
T d1z5ye1          22 PVLLNVWATW------CPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKEL   71 (136)
T ss_dssp             CEEEEEECTT------CHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHH
T ss_pred             EEEEEEEcCc------CCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHc
Confidence            4555588998      9999986666554   567777777777766655555444

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.70  E-value=1.9  Score=28.00  Aligned_cols=63  Identities=19%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             CcchHHHHHHHHhcCCceeEEEcCCCHHH---HHHHHH-H--hCCCCCCCceEEECCeeeCChHHHHHH
Q psy15946        118 YHRCLKVKQILRTHLVKFDDKDVFMSRET---QQEFKE-R--LGTDVINVPQIFVEGVHIGDADAIERL  180 (251)
Q Consensus       118 c~~C~~~k~lL~~~~v~~~e~dv~~~~~~---~~el~~-~--~g~~~~~vP~vfi~g~~iGG~d~l~~l  180 (251)
                      -..++.+|-+|...|++|+.+.++.....   ..+... .  .......+|.+..+|..|.....+.+.
T Consensus        10 ~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~Y   78 (84)
T d2c4ja2          10 RGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRY   78 (84)
T ss_dssp             SGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHH
T ss_pred             chhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHHHHH
Confidence            45789999999999999999888654221   111111 1  112456799999999988776655543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=1.3  Score=34.09  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             HHHHHHHHHcCCccceeec-cCCHHHHHHHHHHh----CCCCCCCCceeeeccccc
Q psy15946         44 LKVKQILRTHLVKFDDKDV-FMSRETQQEFKERL----GTDVINVPQIFVEGVHIG   94 (251)
Q Consensus        44 ~~~k~~L~~~~v~~~e~dv-~~d~~~~~el~~~~----g~g~~~vP~i~i~g~~~g   94 (251)
                      ..+++++.+.|++-+.++- ..+.+..+.+.+-.    ..|...+|.++|||++..
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v   62 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQL   62 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeee
Confidence            4688999999998766652 33444333332211    125788999999999843

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=1.2  Score=32.64  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             eEEEEeecCCCCCCCCchHHHHHH----------HHHHcCCccceeeccCCHHHHHHHHHHhCCCCCCCCceee
Q psy15946         25 KIVMYSTTMGIVRDTYHRCLKVKQ----------ILRTHLVKFDDKDVFMSRETQQEFKERLGTDVINVPQIFV   88 (251)
Q Consensus        25 ~vvvyt~~~~~~~~~C~~C~~~k~----------~L~~~~v~~~e~dv~~d~~~~~el~~~~g~g~~~vP~i~i   88 (251)
                      -+|.++++|      |++|++..+          +++++   |.-+.++.+.+.-..+.+.+  +...+|.+++
T Consensus        45 llV~~~~~~------C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~~~~~~~y--~v~~~Pti~~  107 (147)
T d2dlxa1          45 LMINIQNVQ------DFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFY--KLGDFPYVSI  107 (147)
T ss_dssp             EEEEEECSC------TTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHH--TCCSSSEEEE
T ss_pred             EEEEEecCC------CCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhhhhhhhhe--ecCceeEEEE
Confidence            344455565      999987654          34332   33333433333345566666  4677998854

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=81.04  E-value=0.68  Score=31.83  Aligned_cols=26  Identities=4%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CCCeEEEEeecCCCCCCCCchHHHHHHHHHHc
Q psy15946         22 EAGKIVMYSTTMGIVRDTYHRCLKVKQILRTH   53 (251)
Q Consensus        22 ~~~~vvvyt~~~~~~~~~C~~C~~~k~~L~~~   53 (251)
                      ..+-+|.|.++|      |++|+++...+++.
T Consensus        20 ~k~vlV~fya~w------C~~Ck~~~p~~~~l   45 (116)
T d2djja1          20 TKDVLIEFYAPW------CGHCKALAPKYEEL   45 (116)
T ss_dssp             TSCEEEEEECSS------CTTHHHHHHHHHHH
T ss_pred             CCCEEEEEEecc------cccccccchHHHHH
Confidence            345689999998      99999999998875

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=0.19  Score=33.14  Aligned_cols=54  Identities=15%  Similarity=0.168  Sum_probs=36.8

Q ss_pred             EEEeecCCCCCCCCchHHHHHHHHHHcCCccceeeccCCH---HHHHHHHHHhCCCCCCCCceeee
Q psy15946         27 VMYSTTMGIVRDTYHRCLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFVE   89 (251)
Q Consensus        27 vvyt~~~~~~~~~C~~C~~~k~~L~~~~v~~~e~dv~~d~---~~~~el~~~~g~g~~~vP~i~i~   89 (251)
                      .+|..+.     +|  +.+++-+|+.+|++|+.+.|+...   ...+++.++.  ....+|++..+
T Consensus         2 kLY~~p~-----s~--s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~   58 (80)
T d1n2aa2           2 KLFYKPG-----AC--SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVN--PKGQVPALLLD   58 (80)
T ss_dssp             EEEECTT-----ST--THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTC--TTCCSCEEECT
T ss_pred             EEEeCCC-----cc--HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHh--cccceeeEEec
Confidence            4677775     45  578999999999999887764322   2223455553  45679999764

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=80.41  E-value=0.3  Score=32.03  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=40.3

Q ss_pred             hHHHHHHHHhcCCceeEEEcCCCH---HHHHHHHHHhCCCCCCCceEEE-CCeeeCChHHHHHHH
Q psy15946        121 CLKVKQILRTHLVKFDDKDVFMSR---ETQQEFKERLGTDVINVPQIFV-EGVHIGDADAIERLN  181 (251)
Q Consensus       121 C~~~k~lL~~~~v~~~e~dv~~~~---~~~~el~~~~g~~~~~vP~vfi-~g~~iGG~d~l~~l~  181 (251)
                      +.+++-+|+..|++|+.+.+....   ...+++.++.  ....+|.+.. ||..+-....+.+..
T Consensus        11 s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~dg~~l~ES~aI~~yL   73 (80)
T d1n2aa2          11 SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVN--PKGQVPALLLDDGTLLTEGVAIMQYL   73 (80)
T ss_dssp             THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTC--TTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHh--cccceeeEEecCCCEEcCHHHHHHHH
Confidence            578999999999999887764321   1223455554  4779999987 467777666655543