Psyllid ID: psy15975

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--

MSNIVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLKYSYK

ccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEcccccccccEEccccccccEEcccccEEccccccccccccccHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccc

cccEEEEEEcccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEccccccccEEEEccccccEEEEEcccEEEEcccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccEEEccccccEEEcccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcc

msnivlirpgvddgtvmrlvrdpkvklKYQHLITNSFVECNrllrwcpspdcnnaikvqhvearpvvckcghrfcfacgenwhdpvrcSLLRRWIkkcdddsetsnWIAANTKECPKCLVTIekdggcnhmvcknqsckaefcwvclgpwephgsswyscnrydeEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRknnqsvlfedNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLKYSYK

msnivlirpgvddgtvmrLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFacgenwhdpvRCSLLRRWIKKCDDDSETSnwiaantkecpKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLerditsenlanikqqvqdkyrlVEIQLKYSYK

***IVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE*************RAALQRYLFYCNRYMNHMQSLKFEHKLYASVKE*****QQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLF**************************LANIKQQVQDKYRLVEIQLK****

*S***LIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLL***************WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAK**********AALQRYLFYCNRYMNHMQSLKFEHKL*****************WIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLKYSY*

MSNIVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEE***********SRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLKYSYK

*SNIVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLKYSYK

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MSNIVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLxxxxxxxxxxxxxxxxxxxxxDITSENLANIKQQVQDKYRLVEIQLKYSYK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		312	2.2.26 [Sep-21-2011]
Q32NS4		529	E3 ubiquitin-protein liga	N/A	N/A	0.942	0.555	0.812	1e-148
B1H1E4		529	E3 ubiquitin-protein liga	yes	N/A	0.942	0.555	0.809	1e-148
Q6PFJ9		527	E3 ubiquitin-protein liga	yes	N/A	0.942	0.557	0.809	1e-148
Q6NW85		533	E3 ubiquitin-protein liga	no	N/A	0.942	0.551	0.809	1e-147
Q9Y4X5		557	E3 ubiquitin-protein liga	yes	N/A	0.942	0.527	0.809	1e-147
Q9Z1K5		555	E3 ubiquitin-protein liga	yes	N/A	0.942	0.529	0.809	1e-147
A2VEA3		555	E3 ubiquitin-protein liga	yes	N/A	0.942	0.529	0.809	1e-147
Q94981		503	Protein ariadne-1 OS=Dros	yes	N/A	0.942	0.584	0.819	1e-144
Q9P3U4		504	Uncharacterized RING fing	yes	N/A	0.891	0.551	0.560	4e-90
O95376		493	E3 ubiquitin-protein liga	no	N/A	0.884	0.559	0.416	1e-62

>sp\|Q32NS4\|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2 SV=1	Back alignment and function desciption

 Score =  523 bits (1348), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 239/294 (81%), Positives = 272/294 (92%)

Query: 11  VDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKC 70
           VDD TVMRL+ D KVKLKYQHLITNSFVECNRLL+WCP+PDC++ +KVQ+ +A+PV CKC
Sbjct: 212 VDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVHCKC 271

Query: 71  GHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNH 130
           G +FCF CGENWHDPV+C  LR+WIKKCDDDSETSNWIAANTKECPKC VTIEKDGGCNH
Sbjct: 272 GRQFCFNCGENWHDPVKCKWLRKWIKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNH 331

Query: 131 MVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCN 190
           MVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E++AK AR AQERSRAALQRYLFYCN
Sbjct: 332 MVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCN 391

Query: 191 RYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFA 250
           RYMNHMQSL+FEHKLYA VK+KMEEMQQHNMSWIEVQFLKKAVD+LCQCR TLMYTYVFA
Sbjct: 392 RYMNHMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEVQFLKKAVDVLCQCRSTLMYTYVFA 451

Query: 251 YYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVE 304
           +YL+KNNQS++FE+NQ DLE+ATE LS YLERDI+ ++L +IKQ+VQDKYR  E
Sbjct: 452 FYLKKNNQSIIFENNQADLENATEVLSGYLERDISQDSLQDIKQKVQDKYRYCE 505

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|B1H1E4\|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1 PE=2 SV=1	Back alignment and function description

>sp\|Q6PFJ9\|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1	Back alignment and function description

>sp\|Q6NW85\|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2 SV=1	Back alignment and function description

>sp\|Q9Y4X5\|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2	Back alignment and function description

>sp\|Q9Z1K5\|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2 SV=3	Back alignment and function description

>sp\|A2VEA3\|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1	Back alignment and function description

>sp\|Q94981\|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2	Back alignment and function description

>sp\|Q9P3U4\|YKX2_SCHPO Uncharacterized RING finger protein C328.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.02 PE=3 SV=1	Back alignment and function description

>sp\|O95376\|ARI2_HUMAN E3 ubiquitin-protein ligase ARIH2 OS=Homo sapiens GN=ARIH2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		312
328711886		507	PREDICTED: protein ariadne-1 homolog [Ac	0.955	0.587	0.882	1e-159
242016336		506	protein ariadne-1, putative [Pediculus h	0.932	0.575	0.917	1e-159
307214633		510	Protein ariadne-1 [Harpegnathos saltator	0.932	0.570	0.907	1e-159
307181827		509	Protein ariadne-1 [Camponotus floridanus	0.932	0.571	0.907	1e-158
340720568		509	PREDICTED: e3 ubiquitin-protein ligase A	0.932	0.571	0.893	1e-158
350401290		509	PREDICTED: E3 ubiquitin-protein ligase a	0.932	0.571	0.893	1e-158
332029156		495	Protein ariadne-1-like protein [Acromyrm	0.929	0.585	0.910	1e-158
48138658		509	PREDICTED: protein ariadne-1 homolog [Ap	0.932	0.571	0.896	1e-158
357623277		519	putative ariadne ubiquitin-conjugating e	0.955	0.574	0.879	1e-158
383849296		508	PREDICTED: E3 ubiquitin-protein ligase a	0.932	0.572	0.896	1e-157

>gi\|328711886\|ref\|XP_001947883.2\| PREDICTED: protein ariadne-1 homolog [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/298 (88%), Positives = 283/298 (94%)

Query: 11  VDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKC 70
           VDD TVMRLVRDPKV++KYQHLITNSFVECNRLLRWCPSPDCNN IK Q+++++PV+C+C
Sbjct: 189 VDDATVMRLVRDPKVRMKYQHLITNSFVECNRLLRWCPSPDCNNVIKAQYIDSKPVICRC 248

Query: 71  GHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNH 130
            H FCF CGENWHDPV+C+LLR+WIKKCDDDSETSNWIAANTKECPKC VTIEKDGGCNH
Sbjct: 249 LHVFCFVCGENWHDPVKCNLLRKWIKKCDDDSETSNWIAANTKECPKCNVTIEKDGGCNH 308

Query: 131 MVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCN 190
           MVCKNQ+CK +FCWVCLGPWEPHGSSWY+CNRYDEEEAK AR AQERSRAALQRYLFYCN
Sbjct: 309 MVCKNQNCKTDFCWVCLGPWEPHGSSWYNCNRYDEEEAKAARDAQERSRAALQRYLFYCN 368

Query: 191 RYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFA 250
           RYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFA
Sbjct: 369 RYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFA 428

Query: 251 YYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVEIQLK 308
           YYL+KNNQSVLFEDNQ+DLESATE LSEYLERDITSENLA+IKQ+VQDKYR  E + K
Sbjct: 429 YYLKKNNQSVLFEDNQRDLESATETLSEYLERDITSENLADIKQKVQDKYRYCESRRK 486

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242016336\|ref\|XP_002428785.1\| protein ariadne-1, putative [Pediculus humanus corporis] gi\|212513470\|gb\|EEB16047.1\| protein ariadne-1, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307214633\|gb\|EFN89583.1\| Protein ariadne-1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307181827\|gb\|EFN69270.1\| Protein ariadne-1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|340720568\|ref\|XP_003398706.1\| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 1 [Bombus terrestris] gi\|340720570\|ref\|XP_003398707.1\| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 2 [Bombus terrestris] gi\|340720572\|ref\|XP_003398708.1\| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 3 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350401290\|ref\|XP_003486110.1\| PREDICTED: E3 ubiquitin-protein ligase arih1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|332029156\|gb\|EGI69167.1\| Protein ariadne-1-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|48138658\|ref\|XP_396912.1\| PREDICTED: protein ariadne-1 homolog [Apis mellifera] gi\|380027774\|ref\|XP_003697593.1\| PREDICTED: E3 ubiquitin-protein ligase arih1l-like [Apis florea]	Back alignment and taxonomy information

>gi\|357623277\|gb\|EHJ74502.1\| putative ariadne ubiquitin-conjugating enzyme E2 binding protein [Danaus plexippus]	Back alignment and taxonomy information

>gi\|383849296\|ref\|XP_003700281.1\| PREDICTED: E3 ubiquitin-protein ligase arih1l-like [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		312
UNIPROTKB\|Q32NS4		529	arih1 "E3 ubiquitin-protein li	0.942	0.555	0.812	1.1e-142
UNIPROTKB\|B1H1E4		529	arih1 "E3 ubiquitin-protein li	0.942	0.555	0.809	2.3e-142
UNIPROTKB\|F1NF42		445	ARIH1 "Uncharacterized protein	0.942	0.660	0.809	2.9e-142
UNIPROTKB\|Q5F465		349	ARIH1 "Uncharacterized protein	0.942	0.842	0.809	2.9e-142
UNIPROTKB\|A2VEA3		555	ARIH1 "E3 ubiquitin-protein li	0.942	0.529	0.809	2.9e-142
UNIPROTKB\|F1PG97		554	ARIH1 "Uncharacterized protein	0.942	0.530	0.809	2.9e-142
UNIPROTKB\|J9NWH8		523	ARIH1 "Uncharacterized protein	0.942	0.562	0.809	2.9e-142
UNIPROTKB\|Q9Y4X5		557	ARIH1 "E3 ubiquitin-protein li	0.942	0.527	0.809	2.9e-142
MGI\|MGI:1344363		555	Arih1 "ariadne ubiquitin-conju	0.942	0.529	0.809	2.9e-142
ZFIN\|ZDB-GENE-040426-2395		533	arih1l "ariadne homolog, ubiqu	0.942	0.551	0.809	2.9e-142

UNIPROTKB\|Q32NS4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 239/294 (81%), Positives = 272/294 (92%)

Query:    11 VDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKC 70
             VDD TVMRL+ D KVKLKYQHLITNSFVECNRLL+WCP+PDC++ +KVQ+ +A+PV CKC
Sbjct:   212 VDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVHCKC 271

Query:    71 GHRFCFACGENWHDPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNH 130
             G +FCF CGENWHDPV+C  LR+WIKKCDDDSETSNWIAANTKECPKC VTIEKDGGCNH
Sbjct:   272 GRQFCFNCGENWHDPVKCKWLRKWIKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNH 331

Query:   131 MVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDEEEAKVARGAQERSRAALQRYLFYCN 190
             MVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E++AK AR AQERSRAALQRYLFYCN
Sbjct:   332 MVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCN 391

Query:   191 RYMNHMQSLKFEHKLYASVKEKMEEMQQHNMSWIEVQFLKKAVDILCQCRQTLMYTYVFA 250
             RYMNHMQSL+FEHKLYA VK+KMEEMQQHNMSWIEVQFLKKAVD+LCQCR TLMYTYVFA
Sbjct:   392 RYMNHMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEVQFLKKAVDVLCQCRSTLMYTYVFA 451

Query:   251 YYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVE 304
             +YL+KNNQS++FE+NQ DLE+ATE LS YLERDI+ ++L +IKQ+VQDKYR  E
Sbjct:   452 FYLKKNNQSIIFENNQADLENATEVLSGYLERDISQDSLQDIKQKVQDKYRYCE 505

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB\|B1H1E4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NF42 ARIH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5F465 ARIH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PG97 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NWH8 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y4X5 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2395 arih1l "ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y4X5	ARI1_HUMAN	6, ., 3, ., 2, ., -	0.8095	0.9423	0.5278	yes	N/A
B1H1E4	ARI1_XENTR	6, ., 3, ., 2, ., -	0.8095	0.9423	0.5557	yes	N/A
Q6PFJ9	ARI1_DANRE	6, ., 3, ., 2, ., -	0.8095	0.9423	0.5578	yes	N/A
Q9Z1K5	ARI1_MOUSE	6, ., 3, ., 2, ., -	0.8095	0.9423	0.5297	yes	N/A
A2VEA3	ARI1_BOVIN	6, ., 3, ., 2, ., -	0.8095	0.9423	0.5297	yes	N/A
Q94981	ARI1_DROME	No assigned EC number	0.8197	0.9423	0.5844	yes	N/A
Q9P3U4	YKX2_SCHPO	No assigned EC number	0.5609	0.8910	0.5515	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		312
smart00647		64	smart00647, IBR, In Between Ring fingers	2e-16
pfam01485		63	pfam01485, IBR, IBR domain	2e-15
smart00647		64	smart00647, IBR, In Between Ring fingers	0.003

>gnl\|CDD\|214763 smart00647, IBR, In Between Ring fingers	Back alignment and domain information

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 28 KYQHLITNSFVECNRLLRWCPSPDCNNAIKVQ-HVEARPVVC-KCGHRFCFACGENWHDP 85
          KY+ L+  S+VE N  L+WCP+PDC+ AI V        V C KCG  FCF C   WH P
Sbjct: 2  KYERLLLESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHSP 61

Query: 86 VRC 88
          V C
Sbjct: 62 VSC 64

the domains occurs between pairs og RING fingers. Length = 64

>gnl\|CDD\|216524 pfam01485, IBR, IBR domain	Back alignment and domain information

>gnl\|CDD\|214763 smart00647, IBR, In Between Ring fingers	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		312
KOG1815\|consensus		444		100.0
KOG1812\|consensus		384		99.95
KOG0006\|consensus		446		99.89
KOG1814\|consensus		445		99.89
smart00647		64	IBR In Between Ring fingers. the domains occurs be	99.56
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	99.48
smart00647		64	IBR In Between Ring fingers. the domains occurs be	98.42
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	98.41
KOG1814\|consensus		445		96.54
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	93.36
PF14952		44	zf-tcix: Putative treble-clef, zinc-finger, Zn-bin	93.08
KOG1812\|consensus		384		91.77
KOG1815\|consensus		444		91.66
PHA00626		59	hypothetical protein	90.54
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	90.43
smart00661		52	RPOL9 RNA polymerase subunit 9.	90.17
PF09297		32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	89.85
PF13719		37	zinc_ribbon_5: zinc-ribbon domain	89.4
PF02150		35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	89.29
PRK00420		112	hypothetical protein; Validated	87.68
PF13717		36	zinc_ribbon_4: zinc-ribbon domain	86.31
PRK00432		50	30S ribosomal protein S27ae; Validated	86.31
KOG2906\|consensus		105		85.99
PF03119		28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	85.64
KOG0317\|consensus		293		85.63
PRK14559		645	putative protein serine/threonine phosphatase; Pro	85.52
KOG0823\|consensus		230		85.15
PRK00398		46	rpoP DNA-directed RNA polymerase subunit P; Provis	84.77
KOG0823\|consensus		230		84.08
TIGR02098		38	MJ0042_CXXC MJ0042 family finger-like domain. This	83.69
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	82.79
PF07975		51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	82.65
KOG0317\|consensus		293		81.66
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	81.46
PRK00398		46	rpoP DNA-directed RNA polymerase subunit P; Provis	81.17
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	81.12
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	81.08
smart00661		52	RPOL9 RNA polymerase subunit 9.	80.88
PRK14559		645	putative protein serine/threonine phosphatase; Pro	80.45
KOG2906\|consensus		105		80.26
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	80.23
KOG0978\|consensus		698		80.21

>KOG1815\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.2e-58  Score=453.83  Aligned_cols=305  Identities=53%  Similarity=0.930  Sum_probs=275.8

Q ss_pred             cccccCCCChHHHhhhCCCHHHHHHHHHHHHHHHHhhCCCceecCCcCCCCceecccCCCCceEcCCCcccccccCCccC
Q psy15975          4 IVLIRPGVDDGTVMRLVRDPKVKLKYQHLITNSFVECNRLLRWCPSPDCNNAIKVQHVEARPVVCKCGHRFCFACGENWH   83 (312)
Q Consensus         4 ~~~~~~~i~~~~i~~~l~~~e~~~~y~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H   83 (312)
                      ..-+.++++++.|..++++++..++|.+++.++||+.+..++|||+|+|++++.........|.|.||+.|||+|+.+||
T Consensus       118 ~~~C~a~v~~~~i~~~~s~~~~~~ky~~~i~~syve~~~~lkwCP~~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H  197 (444)
T KOG1815|consen  118 AHGCPALVGEDTVEKLVSDKEDKEKYQRYILRSYVEDNVPLKWCPAPGCGLAVKFGSLESVEVDCGCGHEFCFACGEESH  197 (444)
T ss_pred             CCCccccCCCceeeeecCCHHHHHHHHHHHHHHHHhcCCccccCCCCCCCceeeccCCCccceeCCCCchhHhhcccccc
Confidence            34577889999999999876788999999999999999999999999999999875556789999999999999999999


Q ss_pred             CCCCchhhHHHhhhcccchhhhHHhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCC-CCCCCC
Q psy15975         84 DPVRCSLLRRWIKKCDDDSETSNWIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSS-WYSCNR  162 (312)
Q Consensus        84 ~p~~C~~~~~w~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~-~~~C~~  162 (312)
                      .|.+|..+..|+++..+++++.+||..|+++||+|..+|||++|||||+|..+.|+++|||+|+++|..|+.. +|.|++
T Consensus       198 ~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~~~~~~~c~~  277 (444)
T KOG1815|consen  198 SPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHGSSTGYSCNR  277 (444)
T ss_pred             CCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccCCccccccccCCcCCeeceeeecccccccccceeeeee
Confidence            9999999999999999999999999999999999999999999999999998889999999999999999876 899999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHH-HhcCcCHHHHHHHHHHHHHHHHHH
Q psy15975        163 YDEEEAKVARGAQERSRAALQRYLFYCNRYMNHMQSLKFEHKLYASVKEK-MEEM-QQHNMSWIEVQFLKKAVDILCQCR  240 (312)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~l~ry~~y~~r~~~h~~s~~~e~~l~~~~~~~-~~~~-~~~~~~~~d~~fl~~a~~~l~~~R  240 (312)
                      |+......   +++.++..+.||.|||+||++|+.+++++..+...+.+. +..+ ....++|+|++|+.+|+..|++||
T Consensus       278 ~~~~~~~~---~~~~a~~~l~r~~~~~~~~~~~q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~r  354 (444)
T KOG1815|consen  278 YVDGKSKS---ARSKARRSLKRYTHYYNRWMEHQVSLKLEGKLLSKVEEVKKPKLSDSLSLSWIDVQFLRDAGDVLVECR  354 (444)
T ss_pred             eechhhhh---HHHHHHHHHHHHHHHHhhHHhhhhhhhhhhhhHHHHHHHhhhhhhcccCeeeeeeeeechhHHHHHhhh
Confidence            99865433   467888999999999999999999999998887776532 2222 222467999999999999999999


Q ss_pred             HHhhccceeeeecccCccchhHHHHHHHHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHHHHHHhhhhc
Q psy15975        241 QTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLER---DITSENLANIKQQVQDKYRLVEIQLKYSY  311 (312)
Q Consensus       241 ~~L~~sY~~~yy~~~~~~~~~fe~~Q~~le~~~e~Ls~~le~---~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  311 (312)
                      ++|+|||+|+||+..++++++||++|.+||..+|.||..++.   +.+..++.++|++|.+++++++.|+..|+
T Consensus       355 ~~l~~s~~~~~~~~~~~~~~~fe~~q~~~~~~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (444)
T KOG1815|consen  355 RTLKWTYAYAYYLSENNKRNLFEDNQTDLESAVEPLSSCLEESLKDISSETLAEFKQKLTDLTSYVRNRFENLL  428 (444)
T ss_pred             hhhhhhhhhhhhhcccchhhhhHHHHHHHhhhhhhhHHHhccccccCCcccHHHHHhhccccchhhhhHHHHHH
Confidence            999999999999998888899999999999999999999999   55678899999999999999999988765

>KOG1812\|consensus	Back alignment and domain information

>KOG0006\|consensus	Back alignment and domain information

>KOG1814\|consensus	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1814\|consensus	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding	Back alignment and domain information

>KOG1812\|consensus	Back alignment and domain information

>KOG1815\|consensus	Back alignment and domain information

>PHA00626 hypothetical protein	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>smart00661 RPOL9 RNA polymerase subunit 9	Back alignment and domain information

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains	Back alignment and domain information

>PF13719 zinc_ribbon_5: zinc-ribbon domain	Back alignment and domain information

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2	Back alignment and domain information

>PRK00420 hypothetical protein; Validated	Back alignment and domain information

>PF13717 zinc_ribbon_4: zinc-ribbon domain	Back alignment and domain information

>PRK00432 30S ribosomal protein S27ae; Validated	Back alignment and domain information

>KOG2906\|consensus	Back alignment and domain information

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0317\|consensus	Back alignment and domain information

>PRK14559 putative protein serine/threonine phosphatase; Provisional	Back alignment and domain information

>KOG0823\|consensus	Back alignment and domain information

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional	Back alignment and domain information

>KOG0823\|consensus	Back alignment and domain information

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair	Back alignment and domain information

>KOG0317\|consensus	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00661 RPOL9 RNA polymerase subunit 9	Back alignment and domain information

>PRK14559 putative protein serine/threonine phosphatase; Provisional	Back alignment and domain information

>KOG2906\|consensus	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>KOG0978\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		312
1wd2_A		60	Solution Structure Of The C-Terminal Ring From A Ri		2e-28

>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr- Ring (Triad) Motif Length = 60

Back alignment and structure

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 58/59 (98%)
Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
           WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59

PyMOL of 1wd2

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		312
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	9e-30
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	2e-07
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	3e-04
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-04

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 60	Back alignment and structure

 Score =  106 bits (267), Expect = 9e-30
 Identities = 53/59 (89%), Positives = 58/59 (98%)

Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
           WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59

PyMOL of 1wd2

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Length = 80	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		312
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	99.9
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	99.6
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	99.42
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	97.9
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	97.73
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.73
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	95.48
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	90.51
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	90.17
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	89.79
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	89.57
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	89.25
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	89.18
2jrp_A		81	Putative cytoplasmic protein; two-zinc binding pro	88.41
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	88.06
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	87.26
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	87.18
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	87.1
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	86.95
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.74
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	86.56
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	86.11
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	86.01
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	85.71
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	85.63
3qt1_I		133	DNA-directed RNA polymerases I, II, and III subun;	85.61
1pft_A		50	TFIIB, PFTFIIBN; N-terminal domain, transcription	85.45
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	85.44
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	85.03
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	84.92
1vq8_Z		83	50S ribosomal protein L37AE; ribosome 50S, protein	84.48
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	84.16
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	84.13
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	83.81
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	83.76
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	83.39
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	83.38
3j20_Y		50	30S ribosomal protein S27AE; archaea, archaeal, KI	83.01
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	82.99
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	82.91
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	82.88
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	82.87
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	82.7
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	82.58
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	82.53
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	82.49
2jne_A		101	Hypothetical protein YFGJ; zinc fingers, two zinc,	82.45
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	82.43
2k4x_A		55	30S ribosomal protein S27AE; metal-binding, ribonu	82.24
1z6u_A		150	NP95-like ring finger protein isoform B; structura	81.72
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	81.71
2jr6_A		68	UPF0434 protein NMA0874; solution, structural geno	81.48
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	81.21
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	81.11
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	81.11
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	80.68
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	80.38
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	80.16
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	80.01

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

Probab=99.90  E-value=5.4e-25  Score=157.19  Aligned_cols=59  Identities=90%  Similarity=1.903  Sum_probs=56.2

Q ss_pred             HhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCCCch
Q psy15975        107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE  165 (312)
Q Consensus       107 ~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~~~~  165 (312)
                      ||.+++|+||+|+++|||++|||||+|..++|+++|||+|+++|+.|+..+|+||+|++
T Consensus         1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~~   59 (60)
T 1wd2_A            1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred             CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCccc
Confidence            78899999999999999999999999997779999999999999999999999999975

PyMOL of 1wd2

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}	Back alignment and structure

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		312
d1wd2a_		60	g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Ho	8e-26
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	4e-13
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	5e-08

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 60	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (237), Expect = 8e-26
 Identities = 53/59 (89%), Positives = 58/59 (98%)

Query: 107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE 165
           WIAANTKECPKC VTIEKDGGCNHMVC+NQ+CKAEFCWVCLGPWEPHGS+WY+CNRY+E
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE 59

PyMOL of d1wd2a_

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		312
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	99.89
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	99.43
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	99.25
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	95.31
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	94.04
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	93.36
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	92.14
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	91.75
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	91.26
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	91.03
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	89.46
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	87.78
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	87.43
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	87.39
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	87.37
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	87.35
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	87.28
d1weoa_		93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	85.81
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	85.29
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.23
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	82.74
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	81.25
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	81.1
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	80.41

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.6e-25  Score=155.22  Aligned_cols=59  Identities=90%  Similarity=1.903  Sum_probs=55.1

Q ss_pred             HhhhcCCCCCCCCceeEecCCCCceeecCCCCCcceecccCCCCCCCCCCCCCCCCCch
Q psy15975        107 WIAANTKECPKCLVTIEKDGGCNHMVCKNQSCKAEFCWVCLGPWEPHGSSWYSCNRYDE  165 (312)
Q Consensus       107 ~i~~~~k~CP~C~~~IeK~~GCnhMtC~~~~C~~~FCw~C~~~w~~h~~~~~~C~~~~~  165 (312)
                      ||..|||+||+|+++|||++|||||+|..++|+++|||+|+++|..|+.++|+||+|++
T Consensus         1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~~~~~~~~~C~~~~e   59 (60)
T d1wd2a_           1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCCC
T ss_pred             CchhcCcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCccccCCCCCCCCcCCcc
Confidence            88899999999999999999999999964349999999999999999999999999975

PyMOL of d1wd2a_

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure