Psyllid ID: psy15984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccccccHHHHHccHEEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHccc
Coil and Loop (DISEMBL)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILvilddesltysCFCCLMdrmaanfpttggvmdnhfanmr
Flexible Loop (DISEMBL)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Low Complexity Region (SEG)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Disordered region (IsUnstruct)
****KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGV*********
Disordered Region (DISOPRED)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Disordered Region (DISEMBL)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Disordered Region (DISPRO)
*SLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTG***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLSKVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q80U12	1005	Small G protein signaling	yes	N/A	0.897	0.060	0.709	9e-23
O43147	1006	Small G protein signaling	yes	N/A	0.897	0.060	0.709	2e-22
Q8BPQ7	1093	Small G protein signaling	no	N/A	0.897	0.055	0.661	2e-21
Q2NKQ1	1148	Small G protein signaling	no	N/A	0.897	0.053	0.661	2e-21
A1A5B6	742	TBC1 domain family member	no	N/A	0.911	0.083	0.451	1e-10
Q3MII6	688	TBC1 domain family member	no	N/A	0.911	0.090	0.451	1e-10
Q9HA65	648	TBC1 domain family member	no	N/A	0.808	0.084	0.4	2e-07
Q6BU76	757	GTPase-activating protein	yes	N/A	0.911	0.081	0.403	2e-07
Q8BYH7	645	TBC1 domain family member	no	N/A	0.808	0.085	0.4	2e-07
Q8TC07	691	TBC1 domain family member	no	N/A	0.705	0.069	0.416	2e-06

>sp|Q80U12|SGSM2_MOUSE Small G protein signaling modulator 2 OS=Mus musculus GN=Sgsm2 PE=2 SV=2

 Score =  105 bits (261), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 53/62 (85%), Gaps = 1/62 (1%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           +YVWEHLD+GY+QGMCDL+AP+LVILD++ L YSCF  LM RM  NFP +GG MD+HFAN
Sbjct: 824 SYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMGQNFP-SGGAMDSHFAN 882

Query: 67  MR 68
           MR
Sbjct: 883 MR 884

Mus musculus (taxid: 10090)

>sp|O43147|SGSM2_HUMAN Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4

 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           +YVWEHLDVGY+QGMCDL+AP+LV LD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct: 825 SYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMKRMSQNFP-NGGAMDTHFAN 883

Query: 67  MR 68
           MR
Sbjct: 884 MR 885

Homo sapiens (taxid: 9606)

>sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1 OS=Mus musculus GN=Sgsm1 PE=2 SV=2

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           +Y+W+H+++GY+QGMCDL+AP+LVILDDE+L +SCF  LM RM  NFP  GG MD HFAN
Sbjct: 912 SYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFP-HGGAMDTHFAN 970

Query: 67  MR 68
           MR
Sbjct: 971 MR 972

Mus musculus (taxid: 10090)

>sp|Q2NKQ1|SGSM1_HUMAN Small G protein signaling modulator 1 OS=Homo sapiens GN=SGSM1 PE=1 SV=2

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            +Y+W+H+++GY+QGMCDL+AP+LVILDDE+L +SCF  LM RM  NFP  GG MD HFAN
Sbjct: 967  SYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFP-HGGAMDTHFAN 1025

Query: 67   MR 68
            MR
Sbjct: 1026 MR 1027

Homo sapiens (taxid: 9606)

>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           TY   H  V Y QGM DL +PIL ++D E   + CFC +M R+AANF   G  M   FA+
Sbjct: 374 TYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAH 433

Query: 67  MR 68
           ++
Sbjct: 434 LK 435

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           TY   H  V Y QGM DL +PIL ++D E   + CFC +M R+AANF   G  M   FA+
Sbjct: 320 TYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAH 379

Query: 67  MR 68
           ++
Sbjct: 380 LK 381

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 6   VTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVM 60
           +TY   H D+GY+QGM DL++PIL ++ +E   + CFC  M+ +  NF  +   M
Sbjct: 405 LTYCMYHFDLGYVQGMSDLLSPILYVIQNEVDAFWCFCGFMELVQGNFEESQETM 459

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 6   VTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFA 65
           +TY   ++++GY+QGM DL++P+ V   DESLT+  F   MDRM  NF      M N   
Sbjct: 525 LTYNEHNVNLGYVQGMTDLLSPLYVTFQDESLTFWAFVNFMDRMERNFLRDQSGMKNQML 584

Query: 66  NM 67
            +
Sbjct: 585 TL 586

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 6   VTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVM 60
           +TY   H D+GY+QGM DL++PIL ++ +E   + CFC  M+ +  NF  +   M
Sbjct: 405 LTYCMYHFDLGYVQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETM 459

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 6   VTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANF 53
           +TY     D+GY+QGM DL++P+L ++++E   + CF   MD+M  NF
Sbjct: 441 MTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNF 488

Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
328703060	1085	PREDICTED: small G protein signaling mod	0.911	0.057	0.790	2e-26
405962911	1136	Small G protein signaling modulator 1 [C	0.897	0.053	0.838	3e-25
442617077	1192	CG1695 [Drosophila melanogaster] gi|4402	0.897	0.051	0.822	4e-25
386764801	1155	CG32506 [Drosophila melanogaster] gi|383	0.897	0.052	0.822	4e-25
307938362	1355	RE30781p [Drosophila melanogaster]	0.897	0.045	0.822	4e-25
198469467	1189	GA16951 [Drosophila pseudoobscura pseudo	0.897	0.051	0.822	4e-25
195482099	1243	GE17885 [Drosophila yakuba] gi|194189435	0.897	0.049	0.822	4e-25
195482093	1153	GE17884 [Drosophila yakuba] gi|194189433	0.897	0.052	0.822	4e-25
195392928	1158	GJ19192 [Drosophila virilis] gi|19414961	0.897	0.052	0.822	4e-25
195392924	1147	GJ19191 [Drosophila virilis] gi|19414961	0.897	0.053	0.822	4e-25

>gi|328703060|ref|XP_001949009.2| PREDICTED: small G protein signaling modulator 1-like [Acyrthosiphon pisum]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/62 (79%), Positives = 58/62 (93%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
           TYVW+HL++GYMQGMCDLVAP+LVILDDE+L+YSCFC LM+RM+ANFP +GG MD HFAN
Sbjct: 903 TYVWDHLEMGYMQGMCDLVAPLLVILDDETLSYSCFCLLMERMSANFPHSGGAMDTHFAN 962

Query: 67  MR 68
           MR
Sbjct: 963 MR 964

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405962911|gb|EKC28541.1| Small G protein signaling modulator 1 [Crassostrea gigas]

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGY+QGMCDLVAP+LVI DDESLTYSCFC LM RM+ANFP  GG MD HFAN
Sbjct: 955  TYVWEHLDVGYVQGMCDLVAPLLVIFDDESLTYSCFCELMKRMSANFP-HGGAMDTHFAN 1013

Query: 67   MR 68
            MR
Sbjct: 1014 MR 1015

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|442617077|ref|NP_728346.2| CG1695 [Drosophila melanogaster] gi|440216981|gb|AAN09549.2| CG1695 [Drosophila melanogaster]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 1011 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1069

Query: 67   MR 68
            MR
Sbjct: 1070 MR 1071

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764801|ref|NP_608395.6| CG32506 [Drosophila melanogaster] gi|383293516|gb|AAN09550.3| CG32506 [Drosophila melanogaster]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 974  TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1032

Query: 67   MR 68
            MR
Sbjct: 1033 MR 1034

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307938362|gb|ADN95587.1| RE30781p [Drosophila melanogaster]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 1174 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1232

Query: 67   MR 68
            MR
Sbjct: 1233 MR 1234

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198469467|ref|XP_001355035.2| GA16951 [Drosophila pseudoobscura pseudoobscura] gi|198146884|gb|EAL32091.2| GA16951 [Drosophila pseudoobscura pseudoobscura]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 1008 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1066

Query: 67   MR 68
            MR
Sbjct: 1067 MR 1068

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482099|ref|XP_002101911.1| GE17885 [Drosophila yakuba] gi|194189435|gb|EDX03019.1| GE17885 [Drosophila yakuba]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 1062 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1120

Query: 67   MR 68
            MR
Sbjct: 1121 MR 1122

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482093|ref|XP_002101909.1| GE17884 [Drosophila yakuba] gi|194189433|gb|EDX03017.1| GE17884 [Drosophila yakuba]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 972  TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1030

Query: 67   MR 68
            MR
Sbjct: 1031 MR 1032

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392928|ref|XP_002055106.1| GJ19192 [Drosophila virilis] gi|194149616|gb|EDW65307.1| GJ19192 [Drosophila virilis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 977  TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1035

Query: 67   MR 68
            MR
Sbjct: 1036 MR 1037

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392924|ref|XP_002055104.1| GJ19191 [Drosophila virilis] gi|194149614|gb|EDW65305.1| GJ19191 [Drosophila virilis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 7    TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
            TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP +GG MD HFAN
Sbjct: 966  TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP-SGGAMDMHFAN 1024

Query: 67   MR 68
            MR
Sbjct: 1025 MR 1026

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0031116	1148	CG1695 [Drosophila melanogaste	0.897	0.053	0.822	4.6e-23
FB|FBgn0052506	1164	CG32506 [Drosophila melanogast	0.897	0.052	0.822	4.7e-23
UNIPROTKB|F1RHG7	927	SGSM2 "Uncharacterized protein	0.897	0.065	0.725	8.8e-20
MGI|MGI:2144695	1005	Sgsm2 "small G protein signali	0.897	0.060	0.709	9.9e-20
UNIPROTKB|I3L9B3	1029	SGSM2 "Uncharacterized protein	0.897	0.059	0.725	1e-19
UNIPROTKB|E2QY50	1301	SGSM2 "Uncharacterized protein	0.897	0.046	0.709	1.1e-19
RGD|1306957	1005	Sgsm2 "small G protein signali	0.897	0.060	0.709	1.3e-19
UNIPROTKB|G3MXN3	1094	Bt.97730 "Uncharacterized prot	0.897	0.055	0.709	1.4e-19
UNIPROTKB|O43147	1006	SGSM2 "Small G protein signali	0.897	0.060	0.709	2.1e-19
UNIPROTKB|F1N8F2	1024	F1N8F2 "Uncharacterized protei	0.897	0.059	0.693	2.7e-19

FB|FBgn0031116 CG1695 [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 51/62 (82%), Positives = 55/62 (88%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP+ GG MD HFAN
Sbjct:   967 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFPS-GGAMDMHFAN 1025

Query:    67 MR 68
             MR
Sbjct:  1026 MR 1027

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

FB|FBgn0052506 CG32506 [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 51/62 (82%), Positives = 55/62 (88%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             TYVWEHLDVGYMQGMCDLVAP+LVI DDESL+YSCFC LM+RM  NFP+ GG MD HFAN
Sbjct:   983 TYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFPS-GGAMDMHFAN 1041

Query:    67 MR 68
             MR
Sbjct:  1042 MR 1043

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1RHG7 SGSM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 8.8e-20, P = 8.8e-20
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLDVGY+QGMCDL+AP+LVILD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   754 SYVWEHLDVGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPN-GGAMDAHFAN 812

Query:    67 MR 68
             MR
Sbjct:   813 MR 814

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

MGI|MGI:2144695 Sgsm2 "small G protein signaling modulator 2" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 9.9e-20, P = 9.9e-20
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLD+GY+QGMCDL+AP+LVILD++ L YSCF  LM RM  NFP+ GG MD+HFAN
Sbjct:   824 SYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMGQNFPS-GGAMDSHFAN 882

Query:    67 MR 68
             MR
Sbjct:   883 MR 884

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|I3L9B3 SGSM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLDVGY+QGMCDL+AP+LVILD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   848 SYVWEHLDVGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPN-GGAMDAHFAN 906

Query:    67 MR 68
             MR
Sbjct:   907 MR 908

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E2QY50 SGSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLD+GY+QGMCDL+AP+LVILD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:  1120 SYVWEHLDIGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPN-GGAMDTHFAN 1178

Query:    67 MR 68
             MR
Sbjct:  1179 MR 1180

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

RGD|1306957 Sgsm2 "small G protein signaling modulator 2" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLD+GY+QGMCDL+AP+LVILD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   824 SYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPN-GGAMDTHFAN 882

Query:    67 MR 68
             MR
Sbjct:   883 MR 884

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|G3MXN3 Bt.97730 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLDVGY+QGMCDL+AP+LV+LD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   913 SYVWEHLDVGYVQGMCDLLAPLLVVLDNDQLAYSCFSHLMKRMSQNFPN-GGAMDAHFAN 971

Query:    67 MR 68
             MR
Sbjct:   972 MR 973

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|O43147 SGSM2 "Small G protein signaling modulator 2" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 44/62 (70%), Positives = 51/62 (82%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHLDVGY+QGMCDL+AP+LV LD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   825 SYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMKRMSQNFPN-GGAMDTHFAN 883

Query:    67 MR 68
             MR
Sbjct:   884 MR 885

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1N8F2 F1N8F2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 243 (90.6 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 43/62 (69%), Positives = 52/62 (83%)

Query:     7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFAN 66
             +YVWEHL+VGY+QGMCDL+AP++VILD++ L YSCF  LM RM+ NFP  GG MD HFAN
Sbjct:   843 SYVWEHLEVGYVQGMCDLLAPLMVILDNDQLAYSCFSHLMKRMSQNFPN-GGAMDTHFAN 901

Query:    67 MR 68
             MR
Sbjct:   902 MR 903

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43147	SGSM2_HUMAN	No assigned EC number	0.7096	0.8970	0.0606	yes	N/A
Q80U12	SGSM2_MOUSE	No assigned EC number	0.7096	0.8970	0.0606	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	3e-14
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	1e-08
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	3e-08

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score = 63.5 bits (155), Expect = 3e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 2   SLSKV--TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTG 57
           SL +V   Y   + +VGY QGM  L AP+L++++DE   + C   LM+R   NF    
Sbjct: 74  SLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYLPD 131

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 2   SLSKV--TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANF 53
            L ++   Y   + DVGY QGM  + AP+L+++ DE   + CF  L++ +  +F
Sbjct: 64  QLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDF 117

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 6   VTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR 48
             Y   + +VGY+QGM  L AP+L++L+ E   + C   L+  
Sbjct: 290 KAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKN 332

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG2058|consensus	436		99.73
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	99.7
COG5210	496	GTPase-activating protein [General function predic	99.7
KOG2197|consensus	488		99.69
KOG4567|consensus	370		99.64
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.5
KOG1092|consensus	484		99.49
KOG2224|consensus	781		99.25
KOG2223|consensus	586		99.09
KOG4347|consensus	671		98.9
KOG2222|consensus	848		98.68
KOG1102|consensus	397		98.65
KOG2221|consensus	267		98.61
KOG4436|consensus	948		98.1
KOG2224|consensus	781		97.54
KOG1091|consensus	625		97.4
KOG1093|consensus	725		96.61
KOG1648|consensus	813		96.25
KOG2595|consensus	395		93.17
KOG4436|consensus	948		89.07

>KOG2058|consensus

Probab=99.73  E-value=2.3e-18  Score=123.13  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=47.6

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhc-CCCCCchh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAA-NFPTTGGV   59 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~-~y~~~~~g   59 (68)
                      |.||+++||+||||||||.++|++|+++++|++|||++..+++++.+ +|.++..|
T Consensus       230 L~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g  285 (436)
T KOG2058|consen  230 LLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIG  285 (436)
T ss_pred             HHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhh
Confidence            46789999999999999999999999999999999999999999754 44444444

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=99.70  E-value=2.4e-17  Score=104.94  Aligned_cols=61  Identities=30%  Similarity=0.499  Sum_probs=50.9

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcC-CCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAAN-FPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~-y~~~~~g~~~~~~   65 (68)
                      +.+|+.+||++|||||||+|+++++.++++|++|||||.++|++.... |.++.+|+...+.
T Consensus        79 L~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~  140 (199)
T smart00164       79 LKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLL  140 (199)
T ss_pred             HHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHH
Confidence            345777899999999999999999999989999999999999998766 5555566665543

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>COG5210 GTPase-activating protein [General function prediction only]

Probab=99.70  E-value=2.2e-17  Score=118.75  Aligned_cols=62  Identities=26%  Similarity=0.466  Sum_probs=56.3

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHH--hhhcCCCCCchhHHHHhhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMD--RMAANFPTTGGVMDNHFAN   66 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~--~~~~~y~~~~~g~~~~~~~   66 (68)
                      +.+|+++||++|||||||++++||+.+++.|++||||++++|+  .++..|..+++|++.....
T Consensus       289 L~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~  352 (496)
T COG5210         289 LKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKV  352 (496)
T ss_pred             HHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHH
Confidence            4578889999999999999999999999999999999999999  3789999999998877654

>KOG2197|consensus

Probab=99.69  E-value=6.4e-18  Score=122.19  Aligned_cols=63  Identities=38%  Similarity=0.743  Sum_probs=60.7

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANM   67 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~y~~~~~g~~~~~~~l   67 (68)
                      +.+|+++|+++||||||+|+++|++.++++|.+|||||+.+|+++..||..|+.||..++..+
T Consensus       270 L~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~  332 (488)
T KOG2197|consen  270 LLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQL  332 (488)
T ss_pred             HhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccccccHHHHhhhh
Confidence            678999999999999999999999999999999999999999999999999999999998765

>KOG4567|consensus

Probab=99.64  E-value=4.3e-17  Score=113.18  Aligned_cols=59  Identities=31%  Similarity=0.574  Sum_probs=49.3

Q ss_pred             hhhh--hhhcCCCCCcccchHHHHHHHHHHhc----------CchhHHHHHHHHHHhhhcCCCCC----chhHHH
Q psy15984          4 SKVT--YVWEHLDVGYMQGMCDLVAPILVILD----------DESLTYSCFCCLMDRMAANFPTT----GGVMDN   62 (68)
Q Consensus         4 ~~~~--y~~~n~~igY~QGm~~l~a~ll~v~~----------~E~~aF~~f~~lm~~~~~~y~~~----~~g~~~   62 (68)
                      +|++  ||-.||+||||||||+|+||+++|+.          .|+|||+||..+|..++|+|..+    +.||+.
T Consensus       175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~  249 (370)
T KOG4567|consen  175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHF  249 (370)
T ss_pred             HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence            4444  56679999999999999999999983          59999999999999999999542    455544

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=99.50  E-value=2.8e-14  Score=90.76  Aligned_cols=61  Identities=30%  Similarity=0.474  Sum_probs=51.9

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHH-HhhhcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLM-DRMAANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm-~~~~~~y~~~~~g~~~~~~   65 (68)
                      +.+|+.+||++||+|||++|+++++.++.+|++|||||.+++ ....+.|..+.+++...+.
T Consensus        77 L~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~  138 (214)
T PF00566_consen   77 LSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILK  138 (214)
T ss_dssp             HHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHH
T ss_pred             HHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhh
Confidence            356778899999999999999999988899999999999999 6677888888788766543

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG1092|consensus

Probab=99.49  E-value=9e-15  Score=104.57  Aligned_cols=67  Identities=31%  Similarity=0.686  Sum_probs=60.8

Q ss_pred             cchhhhhhh--cCCCCCcccchHHHHHHHHHHh-------------------------cCchhHHHHHHHHHHhhhcCCC
Q psy15984          2 SLSKVTYVW--EHLDVGYMQGMCDLVAPILVIL-------------------------DDESLTYSCFCCLMDRMAANFP   54 (68)
Q Consensus         2 ~~~~~~y~~--~n~~igY~QGm~~l~a~ll~v~-------------------------~~E~~aF~~f~~lm~~~~~~y~   54 (68)
                      +++|+.|.|  +||..||+||.||++.|++.++                         ..|+|+|||++++++.+++||.
T Consensus       269 ~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYt  348 (484)
T KOG1092|consen  269 MLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYT  348 (484)
T ss_pred             HHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhh
Confidence            678888877  6999999999999999999876                         2599999999999999999999


Q ss_pred             CCchhHHHHhhhcC
Q psy15984         55 TTGGVMDNHFANMR   68 (68)
Q Consensus        55 ~~~~g~~~~~~~l~   68 (68)
                      --|+||.++.++|+
T Consensus       349 faQpGIq~kV~~L~  362 (484)
T KOG1092|consen  349 FAQPGIQRKVKNLK  362 (484)
T ss_pred             hcChhHHHHHHHHH
Confidence            99999999988774

>KOG2224|consensus

Probab=99.25  E-value=2e-12  Score=93.96  Aligned_cols=45  Identities=40%  Similarity=0.690  Sum_probs=38.6

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM   49 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~   49 (68)
                      +.-||+|||.+||.|||+|+++|.++-+++|+++||||+.+|+.+
T Consensus       528 lln~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgm  572 (781)
T KOG2224|consen  528 LLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGM  572 (781)
T ss_pred             HHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccc
Confidence            345999999999999999999999988888888888888888743

>KOG2223|consensus

Probab=99.09  E-value=1e-10  Score=84.60  Aligned_cols=60  Identities=32%  Similarity=0.420  Sum_probs=52.2

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh--hcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM--AANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~--~~~y~~~~~g~~~~~~   65 (68)
                      +-||+.+.|++||||||+.|+|.+++-+ ++.+||-||.+++++-  ...|.-|++-|...+.
T Consensus       387 L~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~  448 (586)
T KOG2223|consen  387 LGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFA  448 (586)
T ss_pred             hhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHH
Confidence            4689999999999999999999999885 5889999999999884  5788888888876654

>KOG4347|consensus

Probab=98.90  E-value=8.7e-10  Score=82.07  Aligned_cols=54  Identities=20%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhh-cCCCCCchh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMA-ANFPTTGGV   59 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~-~~y~~~~~g   59 (68)
                      |.||+|.||+|||||-||-+++.++..+ .|+.+||+++++++..- +.|.....|
T Consensus       274 L~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yys~~vvG  328 (671)
T KOG4347|consen  274 LTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYYSKTVVG  328 (671)
T ss_pred             HHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhcccccchhhhh
Confidence            5789999999999999999999988774 56799999999999964 555555444

>KOG2222|consensus

Probab=98.68  E-value=1.6e-08  Score=74.60  Aligned_cols=48  Identities=27%  Similarity=0.492  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh-hcCCCC
Q psy15984          7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM-AANFPT   55 (68)
Q Consensus         7 ~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~-~~~y~~   55 (68)
                      +.|+.-|++||||||..|++.+++.+. |+.|||+...+++.+ .++|.+
T Consensus       246 ~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaiiedilp~nfys  294 (848)
T KOG2222|consen  246 CIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAIIEDILPANFYS  294 (848)
T ss_pred             hheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHHHHhcCchhhh
Confidence            355668999999999999999988866 559999999999986 456643

>KOG1102|consensus

Probab=98.65  E-value=1.8e-08  Score=71.62  Aligned_cols=59  Identities=25%  Similarity=0.394  Sum_probs=48.0

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh-hcCCCCCchhHHHHh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM-AANFPTTGGVMDNHF   64 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~-~~~y~~~~~g~~~~~   64 (68)
                      +.+|+.++|++||||||..++++++..+. |++|||.++++|+.. .+.|....+|+.+.+
T Consensus       217 l~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~~~l~~~~  276 (397)
T KOG1102|consen  217 LKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGFSGLQRSF  276 (397)
T ss_pred             chhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccCCchhhhH
Confidence            36899999999999999999999999877 889999999999875 344455555555444

>KOG2221|consensus

Probab=98.61  E-value=2.9e-08  Score=66.93  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhh-cCCCC
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMA-ANFPT   55 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~-~~y~~   55 (68)
                      +.+|..++|+.||||+-..|++.++..++. .|+||||+++++..- ..|++
T Consensus       175 lka~ti~~pe~g~cq~qapiaa~llmhmp~-rdaf~~~vqicekylqgy~~s  225 (267)
T KOG2221|consen  175 LKAYTIYKPEEGYCQAQAPIAAVLLMHMPA-RDAFWCFVQICEKYLQGYYSS  225 (267)
T ss_pred             HHHHHHhCchhhhhhhhchHHHHHHhcccH-HHHHHHHHHHHHHHccccccc
Confidence            568999999999999999999999998775 599999999999865 44544

>KOG4436|consensus

Probab=98.10  E-value=3.4e-06  Score=64.74  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=50.6

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh--hhcCCCCCchhHHHHh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR--MAANFPTTGGVMDNHF   64 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~--~~~~y~~~~~g~~~~~   64 (68)
                      +.+|...+|++|||||.+.+++++++.+. |+.||-+...+|..  ++.-|.+|+..++.+.
T Consensus       654 Lkayslld~e~gycqg~~fv~gvlllh~~-e~~afellk~LM~~r~~r~qy~pdm~~lq~qm  714 (948)
T KOG4436|consen  654 LKAYSLLDPEVGYCQGLSFVAGVLLLHMS-EENAFELLKFLMFDRGMRKQYRPDMKKLQIQM  714 (948)
T ss_pred             HHHhcccCccccccCcchhhhhhhHhhcc-hhhHHHHHHHHHHHHhhHhhhchHHHHHHHHH
Confidence            56788899999999999999999999965 67999999999966  4788999887776654

>KOG2224|consensus

Probab=97.54  E-value=2.6e-05  Score=57.45  Aligned_cols=54  Identities=44%  Similarity=0.598  Sum_probs=43.8

Q ss_pred             CCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcCCCCCchhHHHHhhhcC
Q psy15984         15 VGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR   68 (68)
Q Consensus        15 igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~y~~~~~g~~~~~~~l~   68 (68)
                      +|-.|||+|+++|++.-+.+|+|+||||+.+|++.--.-++....|.+++..||
T Consensus       566 vglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylr  619 (781)
T KOG2224|consen  566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLR  619 (781)
T ss_pred             hhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHH
Confidence            678899999999999999999999999999999854444454566777766553

>KOG1091|consensus

Probab=97.40  E-value=4.1e-05  Score=57.07  Aligned_cols=40  Identities=35%  Similarity=0.679  Sum_probs=30.4

Q ss_pred             cchhhh--hhhcCCCCCcccchHHHHHHHHHHhcCchhHHHH
Q psy15984          2 SLSKVT--YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSC   41 (68)
Q Consensus         2 ~~~~~~--y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~   41 (68)
                      +|++++  |+.-||.+||-|||.++.||+++|.....++|-=
T Consensus       131 mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h  172 (625)
T KOG1091|consen  131 MLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLH  172 (625)
T ss_pred             HHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHH
Confidence            456665  4455999999999999999999998654444443

>KOG1093|consensus

Probab=96.61  E-value=0.0026  Score=48.13  Aligned_cols=59  Identities=22%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             chhhhhh--hcCCCCCcccchHHHHHHHHHHh-cCchhHHHHHHHHHHhhh-cCCCCCchhHH
Q psy15984          3 LSKVTYV--WEHLDVGYMQGMCDLVAPILVIL-DDESLTYSCFCCLMDRMA-ANFPTTGGVMD   61 (68)
Q Consensus         3 ~~~~~y~--~~n~~igY~QGm~~l~a~ll~v~-~~E~~aF~~f~~lm~~~~-~~y~~~~~g~~   61 (68)
                      |+|+.-|  ..+|..-|-||.-.+++||++.. ++|..||-|+..++-+.. ..|..|.+.+.
T Consensus       417 lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vi  479 (725)
T KOG1093|consen  417 LRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVI  479 (725)
T ss_pred             HHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhH
Confidence            4555544  46899999999999999998775 789999999999998865 45556555543

>KOG1648|consensus

Probab=96.25  E-value=0.0003  Score=52.57  Aligned_cols=60  Identities=48%  Similarity=0.870  Sum_probs=46.4

Q ss_pred             hhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcCCCCCchhHHHHhhhcC
Q psy15984          8 YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANMR   68 (68)
Q Consensus         8 y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~y~~~~~g~~~~~~~l~   68 (68)
                      |.-.|.+-||.|||+|+.+|++..+++|..+--||+-+|-.-+..|.. .+||..-+.++|
T Consensus       639 ~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q-~~~~~~~l~~~r  698 (813)
T KOG1648|consen  639 YVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ-RPGMSKCLLNLR  698 (813)
T ss_pred             eeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC-CCCccccccccc
Confidence            444577789999999999999999999999999999888776666654 566655554443

>KOG2595|consensus

Probab=93.17  E-value=0.094  Score=37.71  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             cCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHH
Q psy15984         11 EHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLM   46 (68)
Q Consensus        11 ~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm   46 (68)
                      .+|+..|=||.+||+..|++++. |.+|+-..+.+-
T Consensus       137 ~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~  171 (395)
T KOG2595|consen  137 KYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELS  171 (395)
T ss_pred             HCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHH
Confidence            48999999999999999999976 778887766654

>KOG4436|consensus

Probab=89.07  E-value=0.51  Score=37.27  Aligned_cols=50  Identities=20%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             hhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh--hcCCCCCc
Q psy15984          7 TYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM--AANFPTTG   57 (68)
Q Consensus         7 ~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~--~~~y~~~~   57 (68)
                      +|...+-++|||||-|.+++.++..++ +..+|-.++.+|...  ++.+.+.+
T Consensus       269 ~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~assv~~~lm~~~rl~~l~kpe~  320 (948)
T KOG4436|consen  269 AYSTKDLEVIFSQGSAFMVGLLLLQMP-VEEASSVKVQLMILYRLRELSKPEM  320 (948)
T ss_pred             HHhhhhhhhhhccchHHHHHHHHhcCc-HHHHHHHHHHHHHhhcccccCCccc
Confidence            456667899999999999999988865 559999999999774  45665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	2e-10
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	3e-09
2qq8_A	334	TBC1 domain family member 14; structural genomics	1e-04
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	5e-04
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	5e-04

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 24/71 (33%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVIL------------------------DDESLTYSCF 42
            +   H   GY+QG+ DLV P  V+                         + E+ TY C 
Sbjct: 136 IWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM 195

Query: 43  CCLMDRMAANF 53
             L+D +  N+
Sbjct: 196 SKLLDGIQDNY 206

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 28/75 (37%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVIL----------------------------DDESLT 38
            +   H   GY+QG+ DLV P                                 D E+ T
Sbjct: 119 LWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT 178

Query: 39  YSCFCCLMDRMAANF 53
           + C   L++++  N+
Sbjct: 179 FWCLTKLLEQITDNY 193

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 8   YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR 48
           Y     DVGY+QGM  + A +++ LD     +  F  L+++
Sbjct: 144 YTCYRPDVGYVQGMSFIAAVLILNLDTAD-AFIAFSNLLNK 183

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 8   YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR 48
           Y     D+GY QG   L A +L+ + +E   +     +M  
Sbjct: 105 YSVYDEDIGYCQGQSFLAAVLLLHMPEEQ-AFCVLVKIMYD 144

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 8   YVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM 49
           Y     +VGY QG+  +   +L+ + +E   +     LM  M
Sbjct: 139 YSLLDQEVGYCQGLSFVAGILLLHMSEEE-AFKMLKFLMFDM 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.79
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.77
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.71
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.71
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.71
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.71
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.35

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.79  E-value=1.2e-19  Score=123.57  Aligned_cols=61  Identities=28%  Similarity=0.476  Sum_probs=54.2

Q ss_pred             hhhhhcCCCCCcccchHHHHHHHHHHhcC------------------------chhHHHHHHHHHHhhhcCCCCCchhHH
Q psy15984          6 VTYVWEHLDVGYMQGMCDLVAPILVILDD------------------------ESLTYSCFCCLMDRMAANFPTTGGVMD   61 (68)
Q Consensus         6 ~~y~~~n~~igY~QGm~~l~a~ll~v~~~------------------------E~~aF~~f~~lm~~~~~~y~~~~~g~~   61 (68)
                      .+|+.+||++|||||||+|++||++++.+                        |++|||||+++|++++++|..+++|+.
T Consensus       135 ~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~  214 (345)
T 2qfz_A          135 FIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQ  214 (345)
T ss_dssp             HHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHH
T ss_pred             HHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHH
Confidence            46777899999999999999999998742                        899999999999999999999999987


Q ss_pred             HHhhh
Q psy15984         62 NHFAN   66 (68)
Q Consensus        62 ~~~~~   66 (68)
                      ..+..
T Consensus       215 ~~~~~  219 (345)
T 2qfz_A          215 MKVKM  219 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.77  E-value=4.1e-19  Score=123.61  Aligned_cols=61  Identities=25%  Similarity=0.433  Sum_probs=54.0

Q ss_pred             hhhhhcCCCCCcccchHHHHHHHHHHhc------------------C----------chhHHHHHHHHHHhhhcCCCCCc
Q psy15984          6 VTYVWEHLDVGYMQGMCDLVAPILVILD------------------D----------ESLTYSCFCCLMDRMAANFPTTG   57 (68)
Q Consensus         6 ~~y~~~n~~igY~QGm~~l~a~ll~v~~------------------~----------E~~aF~~f~~lm~~~~~~y~~~~   57 (68)
                      .+|+.+||++|||||||+|++||++++.                  +          |++|||||+++|++++++|..++
T Consensus       118 ~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~  197 (396)
T 1fkm_A          118 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQ  197 (396)
T ss_dssp             HHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTC
T ss_pred             HHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Confidence            3577789999999999999999999862                  1          89999999999999999999999


Q ss_pred             hhHHHHhhh
Q psy15984         58 GVMDNHFAN   66 (68)
Q Consensus        58 ~g~~~~~~~   66 (68)
                      +|+...+..
T Consensus       198 ~~i~~~~~~  206 (396)
T 1fkm_A          198 PGILRQVKN  206 (396)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998877654

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.71  E-value=4.5e-18  Score=113.82  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh-hhcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR-MAANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~-~~~~y~~~~~g~~~~~~   65 (68)
                      +.+|+++||++|||||||+|++||++++ +|++|||||+++|++ +++.|.++.+|+...+.
T Consensus       117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~  177 (292)
T 4hl4_A          117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMDPTMDNTKHILN  177 (292)
T ss_dssp             HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGG
T ss_pred             HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            3578889999999999999999999776 588999999999987 45677777667655443

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.71  E-value=7.1e-18  Score=114.09  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh--hhcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR--MAANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~--~~~~y~~~~~g~~~~~~   65 (68)
                      +.+|+++||++|||||||+|++||++++ +|++|||||+.+|++  ++++|.++.+|+...+.
T Consensus       136 L~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~  197 (331)
T 3qye_A          136 LKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMY  197 (331)
T ss_dssp             HHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHH
T ss_pred             HHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHH
Confidence            3468889999999999999999999886 688999999999987  47899999999877654

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.71  E-value=4e-18  Score=114.59  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHh--hhcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDR--MAANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~--~~~~y~~~~~g~~~~~~   65 (68)
                      +.+|+++||++|||||||+|++||+.++ +|++|||||+++|++  +++.|.++.+|+...+.
T Consensus       102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~  163 (310)
T 3hzj_A          102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFY  163 (310)
T ss_dssp             HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence            3468889999999999999999999987 688999999999987  68889888888776543

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.71  E-value=5.7e-18  Score=115.31  Aligned_cols=60  Identities=32%  Similarity=0.464  Sum_probs=51.2

Q ss_pred             hhhhhhcCCCCCcccchHHHHHHHHHHhcCchhHHHHHHHHHHhh--hcCCCCCchhHHHHhh
Q psy15984          5 KVTYVWEHLDVGYMQGMCDLVAPILVILDDESLTYSCFCCLMDRM--AANFPTTGGVMDNHFA   65 (68)
Q Consensus         5 ~~~y~~~n~~igY~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~--~~~y~~~~~g~~~~~~   65 (68)
                      +.+|+++||++|||||||+|+|||++++ +|++|||||+++|++.  .++|..+++++...+.
T Consensus       141 L~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~  202 (334)
T 2qq8_A          141 LGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFA  202 (334)
T ss_dssp             HHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHH
Confidence            3468889999999999999999999875 6889999999999876  4678888888876554

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.35  E-value=5.5e-13  Score=90.30  Aligned_cols=51  Identities=6%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             cccchHHHHHHHHHHhcCchhHHHHHHHHHHhhhcCCCCCchhHHHHhhhc
Q psy15984         17 YMQGMCDLVAPILVILDDESLTYSCFCCLMDRMAANFPTTGGVMDNHFANM   67 (68)
Q Consensus        17 Y~QGm~~l~a~ll~v~~~E~~aF~~f~~lm~~~~~~y~~~~~g~~~~~~~l   67 (68)
                      ++|||++|+++++.++++|+||||||+++|++++++|.++++|+++.+++|
T Consensus       131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l~~L  181 (294)
T 3qwl_A          131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY  181 (294)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTTTGGGHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHH
Confidence            459999999999999999999999999999999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	2e-06

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 28/75 (37%)

Query: 7   TYVWEHLDVGYMQGMCDLVAPILVIL----------------------------DDESLT 38
            +   H   GY+QG+ DLV P                                 D E+ T
Sbjct: 118 LWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT 177

Query: 39  YSCFCCLMDRMAANF 53
           + C   L++++  N+
Sbjct: 178 FWCLTKLLEQITDNY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.8

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.3e-20  Score=118.64  Aligned_cols=49  Identities=29%  Similarity=0.537  Sum_probs=44.3

Q ss_pred             hhhhhcCCCCCcccchHHHHHHHHHHhc----------------------------CchhHHHHHHHHHHhhhcCCC
Q psy15984          6 VTYVWEHLDVGYMQGMCDLVAPILVILD----------------------------DESLTYSCFCCLMDRMAANFP   54 (68)
Q Consensus         6 ~~y~~~n~~igY~QGm~~l~a~ll~v~~----------------------------~E~~aF~~f~~lm~~~~~~y~   54 (68)
                      .+|+++||++|||||||+|+|||++++.                            .|+|+||||+++|++++++|.
T Consensus       117 ~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         117 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            4678899999999999999999999873                            389999999999999999885