Psyllid ID: psy16012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--
DVTSTLLRAGTKRKRSTSNENTENDINLKDKRLRQDEEALAAERKPLSELITRVSLSSPGSTSSEGHDPSTTVQEEFGLLTPVELDEDSCDSLSSHSSSWVTKLPPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHccccccccccccHHHHHHHHccHHHHHcHHHHHHHccccccccccccccccccccccHHHcccccHHHHcccHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEHHccccccccHHHHHHHccccccccccEEEEEEEcccHHHHHHcEEEEccccccc
cccHHHHHcccHHHcccccccccccccHHHHHHHHHHHHEEEEccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHcccccccEccccHHHHccHcHcHHHcHHHHHHHccccHHHHHHHHHHEEcccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHccEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHcEEcccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEHHHHcccccccccEEEEcccccccccccEEEEEEccccHHHHHHHEEEEccccccc
DVTSTLlragtkrkrstsnentendinlkDKRLRQDEEALAAERKPLSELITRvslsspgstsseghdpsttvqeefglltpveldedscdslsshssswvtklpprpspfptldwaneEDLWDLLCakdqdslslrdphmldrhpsivprmrtpVFWIITGLSLKMFMMYEYRLYCVNNYFLFtiftpsnivlpiltlnkVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYlstnanivpkqQLQLIGVAALMIAAKVeeiyppkvsdyayvtdgacssqDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRssrchnlgfiypafsRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILcekspgtdycdsdsnelppgplrhnnvfdyAYSYHKHSVSMELSDLAIAESAKLLkeeqqpttpgnrtysvpcdmtpppssskgqttpsskarqartptsskappttpsssktilpatpssskasrksappaittpcsskslrsgsdsqQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAkdqdslslrdphmldrhpsivprmrtLSVSYSLfldhvprlpsqichvmgvltpdikdplilVVGVNNHLYSLYEDYIItsnvyedw
dvtstllragtkrkrstsnentendinlkdkrlRQDEEALAaerkplselitrvslsspgstsseghdpsttVQEEFGLLTPVELDEDSCDSLSShssswvtklpprPSPFPTLDWANEEDLWDLLCAKDQdslslrdphmldrhpsivprmrtpvFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLkeeqqpttpgnrtysvpCDMTPppssskgqttpsskarqartptsskappttpsssktilpatpssskasrksappaittpcsskslrsgsDSQQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
DVTSTLLRAGTKRKRSTSNENTENDINLKDKRLRQDEEALAAERKPLSELITRVslsspgstssEGHDPSTTVQEEFGLLTPVeldedscdslsshsssWVTKLPPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARtptsskappttpsssktILpatpssskasrksappaITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
***************************************************************************************************************PTLDWANEEDLWDLLCAKDQ**********LDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYC************RHNNVFDYAYSYHKHSVSMELS*L*********************************************************************************************************QTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQ*************HPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVY***
*************************************************************************************************************PFPTLDWANEEDLWDLLCAK**********************MRTPVFWIITGLS***********YCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDY****************NVFDYAYSYHKHSVSMELSDL***********************************************************************************************************ITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYED*
DVTSTLLR***************NDINLKDKRLRQDEEALAAERKPLSELITRV*****************TVQEEFGLLTPVEL*******************PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDM**************************************************************************QLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
**********************************QDEEALAAERKPLSELITRVSLS************STTVQEEFGLLTPV*LD**SCDSLSSH****VTKLPPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQ*****************************************************************************************QQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
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DVTSTLLRAGTKRKRSTSxxxxxxxxxxxxxxxxxxxxxLAAERKPLSELITRVSLSSPGSTSSEGHDPSTTVQEEFGLLTPVELDEDSCDSLSSHSSSWVTKLPPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIISRRLQTKISRTAFYMMCAKDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITSNVYEDW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query712 2.2.26 [Sep-21-2011]
P54733709 G1/S-specific cyclin-E OS no N/A 0.456 0.458 0.379 3e-58
O15995424 G1/S-specific cyclin-E OS N/A N/A 0.369 0.620 0.391 7e-55
P24864410 G1/S-specific cyclin-E1 O yes N/A 0.363 0.631 0.406 8e-55
Q91780408 G1/S-specific cyclin-E2 O N/A N/A 0.363 0.634 0.406 4e-54
P50756408 G1/S-specific cyclin-E1 O N/A N/A 0.363 0.634 0.406 5e-54
P49707407 G1/S-specific cyclin-E1 O yes N/A 0.360 0.631 0.409 5e-54
P39949411 G1/S-specific cyclin-E1 O yes N/A 0.362 0.627 0.401 1e-53
Q61457408 G1/S-specific cyclin-E1 O yes N/A 0.358 0.625 0.403 2e-53
O42575408 G1/S-specific cyclin-E3 O N/A N/A 0.366 0.639 0.398 6e-53
P47794410 G1/S-specific cyclin-E1 O yes N/A 0.262 0.456 0.510 4e-51
>sp|P54733|CCNE_DROME G1/S-specific cyclin-E OS=Drosophila melanogaster GN=CycE PE=1 SV=2 Back     alignment and function desciption
 Score =  227 bits (578), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 200/361 (55%), Gaps = 36/361 (9%)

Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           R +LLDWL EVCEVY LHRETFYL +DY+DRYL   A+ V K  LQLIG+  L +AAKVE
Sbjct: 362 RAILLDWLIEVCEVYKLHRETFYLAVDYLDRYLHV-AHKVQKTHLQLIGITCLFVAAKVE 420

Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQV------- 356
           EIYPPK+ ++AYVTDGAC+ +DIL+ E  +L  L+W+I+P+T   WL V++Q+       
Sbjct: 421 EIYPPKIGEFAYVTDGACTERDILNHEKILLQALDWDISPITITGWLGVYMQLNVNNRTP 480

Query: 357 -----VYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLV 411
                +  + S   +  FIYP FS   + Q  +LLDLC LD+   NYSYSVLA  AI   
Sbjct: 481 ASFSQIGRQKSAEADDAFIYPQFSGFEFVQTSQLLDLCTLDVGMANYSYSVLAAAAISHT 540

Query: 412 CSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSD---SNELPPGPLRHNN 468
            S+E+A   SGL  + ++ C  WM  ++ ++ +K+P     + +   SN+   G +  N 
Sbjct: 541 FSREMALRCSGLDWQVIQPCARWMEPFFRVISQKAPYLQLNEQNEQVSNKFGLGLICPNI 600

Query: 469 VFDYAYSYHKHSVSMELSD-LAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSK-- 525
           V D ++    H+ +M++ D + +A+ A      +   +P     +    +TPP SS K  
Sbjct: 601 VTDDSHIIQTHTTTMDMYDEVLMAQDAAHAMRARIQASPATALRAPESLLTPPASSHKPD 660

Query: 526 ---GQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSK 582
              G     + AR                SS T    T +S+K  + S+  ++T+ CSS+
Sbjct: 661 EYLGDEGDETGARSG-------------ISSTTTCCNTAASNKGGKSSSNNSVTS-CSSR 706

Query: 583 S 583
           S
Sbjct: 707 S 707
Essential for the control of the cell cycle at the G1/S (start) transition. Targeted by archipelago for degradation by the SFC ubiquitin ligase complex.
Drosophila melanogaster (taxid: 7227)
>sp|O15995|CCNE_HEMPU G1/S-specific cyclin-E OS=Hemicentrotus pulcherrimus GN=CYCE PE=2 SV=1 Back     alignment and function description
>sp|P24864|CCNE1_HUMAN G1/S-specific cyclin-E1 OS=Homo sapiens GN=CCNE1 PE=1 SV=2 Back     alignment and function description
>sp|Q91780|CCNE2_XENLA G1/S-specific cyclin-E2 OS=Xenopus laevis GN=cyce2 PE=2 SV=1 Back     alignment and function description
>sp|P50756|CCNE1_XENLA G1/S-specific cyclin-E1 OS=Xenopus laevis GN=cyce1 PE=2 SV=1 Back     alignment and function description
>sp|P49707|CCNE1_CHICK G1/S-specific cyclin-E1 OS=Gallus gallus GN=CCNE1 PE=2 SV=1 Back     alignment and function description
>sp|P39949|CCNE1_RAT G1/S-specific cyclin-E1 OS=Rattus norvegicus GN=Ccne1 PE=2 SV=2 Back     alignment and function description
>sp|Q61457|CCNE1_MOUSE G1/S-specific cyclin-E1 OS=Mus musculus GN=Ccne1 PE=1 SV=2 Back     alignment and function description
>sp|O42575|CCNE3_XENLA G1/S-specific cyclin-E3 OS=Xenopus laevis GN=cyce3 PE=2 SV=1 Back     alignment and function description
>sp|P47794|CCNE1_DANRE G1/S-specific cyclin-E1 OS=Danio rerio GN=ccne1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
291230700417 PREDICTED: cyclin E-like [Saccoglossus k 0.370 0.633 0.393 5e-58
17136874602 cyclin E, isoform B [Drosophila melanoga 0.456 0.539 0.379 1e-56
17136872709 cyclin E, isoform A [Drosophila melanoga 0.456 0.458 0.379 2e-56
16769124410 LD17578p [Drosophila melanogaster] 0.463 0.804 0.382 2e-56
386769662712 cyclin E, isoform F [Drosophila melanoga 0.456 0.456 0.379 2e-56
429166601 Drosophila cyclin E type I [Drosophila m 0.452 0.535 0.380 1e-55
194857591708 GG24197 [Drosophila erecta] gi|190660855 0.393 0.395 0.414 1e-55
195338641706 GM14232 [Drosophila sechellia] gi|194129 0.464 0.468 0.377 2e-55
195579440701 GD21944 [Drosophila simulans] gi|1941915 0.464 0.472 0.377 3e-55
195475482713 GE19392 [Drosophila yakuba] gi|194176114 0.393 0.392 0.411 4e-55
>gi|291230700|ref|XP_002735304.1| PREDICTED: cyclin E-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 176/282 (62%), Gaps = 18/282 (6%)

Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           R++LLDWL EVCEVY LHRET+YL  D++DRYL+T  +I PK +LQLIG+ AL +AAK+E
Sbjct: 148 RSILLDWLIEVCEVYRLHRETYYLAQDFVDRYLATQKDI-PKTRLQLIGITALFVAAKLE 206

Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
           EIYPP++S++AYVTDGAC+  +IL  E+ +L  L W+++P+T + WLN++LQ+ +     
Sbjct: 207 EIYPPRLSEFAYVTDGACTENEILIEELVVLKALNWDLSPITVNTWLNIYLQLCHLNRVE 266

Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
                F +P +S  ++ Q  +L+DLC LDI CL +SYS+LAT+A+Y + S E++  +SGL
Sbjct: 267 DSGDDFTFPHYSANMFIQVAQLIDLCMLDIDCLQFSYSILATSALYHMASPEISFKVSGL 326

Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSM 483
           + + +  C++WM  + + + E                  PL+H   F    +   H++  
Sbjct: 327 KWDDIATCVQWMTAFSITIRESG--------------IAPLKH---FSQVLTEDSHNIQT 369

Query: 484 ELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSK 525
            ++D++  E A+  + +    +  N    + C +TPP S+ K
Sbjct: 370 HVNDISTLERAQERQSQINSESLRNSPVLMSCVLTPPQSTEK 411

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|17136874|ref|NP_476960.1| cyclin E, isoform B [Drosophila melanogaster] gi|7298247|gb|AAF53479.1| cyclin E, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|17136872|ref|NP_476959.1| cyclin E, isoform A [Drosophila melanogaster] gi|24584472|ref|NP_723924.1| cyclin E, isoform C [Drosophila melanogaster] gi|24584474|ref|NP_723925.1| cyclin E, isoform D [Drosophila melanogaster] gi|24584476|ref|NP_723926.1| cyclin E, isoform E [Drosophila melanogaster] gi|12644318|sp|P54733.2|CCNE_DROME RecName: Full=G1/S-specific cyclin-E; Short=DmCycE gi|7298245|gb|AAF53477.1| cyclin E, isoform A [Drosophila melanogaster] gi|7298246|gb|AAF53478.1| cyclin E, isoform C [Drosophila melanogaster] gi|17862350|gb|AAL39652.1| LD22682p [Drosophila melanogaster] gi|22946561|gb|AAN10907.1| cyclin E, isoform D [Drosophila melanogaster] gi|22946562|gb|AAN10908.1| cyclin E, isoform E [Drosophila melanogaster] gi|220947266|gb|ACL86176.1| CycE-PA [synthetic construct] gi|220956712|gb|ACL90899.1| CycE-PA [synthetic construct] Back     alignment and taxonomy information
>gi|16769124|gb|AAL28781.1| LD17578p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|386769662|ref|NP_001246037.1| cyclin E, isoform F [Drosophila melanogaster] gi|383291506|gb|AFH03711.1| cyclin E, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|429166|emb|CAA52934.1| Drosophila cyclin E type I [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194857591|ref|XP_001968988.1| GG24197 [Drosophila erecta] gi|190660855|gb|EDV58047.1| GG24197 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195338641|ref|XP_002035933.1| GM14232 [Drosophila sechellia] gi|194129813|gb|EDW51856.1| GM14232 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195579440|ref|XP_002079570.1| GD21944 [Drosophila simulans] gi|194191579|gb|EDX05155.1| GD21944 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195475482|ref|XP_002090013.1| GE19392 [Drosophila yakuba] gi|194176114|gb|EDW89725.1| GE19392 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
FB|FBgn0010382709 CycE "Cyclin E" [Drosophila me 0.394 0.396 0.416 1.1e-56
UNIPROTKB|F1NQ71372 CCNE1 "G1/S-specific cyclin-E1 0.262 0.502 0.505 3.7e-54
UNIPROTKB|F1Q3X7313 CCNE1 "Uncharacterized protein 0.332 0.757 0.44 1.3e-53
UNIPROTKB|P49707407 CCNE1 "G1/S-specific cyclin-E1 0.262 0.459 0.5 1.6e-53
MGI|MGI:88316408 Ccne1 "cyclin E1" [Mus musculu 0.273 0.477 0.475 1.8e-52
RGD|2294411 Ccne1 "cyclin E1" [Rattus norv 0.273 0.474 0.475 4.8e-52
UNIPROTKB|P39949411 Ccne1 "G1/S-specific cyclin-E1 0.273 0.474 0.475 4.8e-52
ZFIN|ZDB-GENE-980526-168410 ccne1 "cyclin E1" [Danio rerio 0.262 0.456 0.510 6.1e-52
UNIPROTKB|E1B9U2375 CCNE1 "Uncharacterized protein 0.412 0.784 0.396 2.2e-50
UNIPROTKB|F1RNY7410 CCNE1 "Uncharacterized protein 0.411 0.714 0.394 1.5e-49
FB|FBgn0010382 CycE "Cyclin E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 560 (202.2 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 124/298 (41%), Positives = 179/298 (60%)

Query:   244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
             R +LLDWL EVCEVY LHRETFYL +DY+DRYL   A+ V K  LQLIG+  L +AAKVE
Sbjct:   362 RAILLDWLIEVCEVYKLHRETFYLAVDYLDRYLHV-AHKVQKTHLQLIGITCLFVAAKVE 420

Query:   304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQV-VYHRSS 362
             EIYPPK+ ++AYVTDGAC+ +DIL+ E  +L  L+W+I+P+T   WL V++Q+ V +R+ 
Sbjct:   421 EIYPPKIGEFAYVTDGACTERDILNHEKILLQALDWDISPITITGWLGVYMQLNVNNRTP 480

Query:   363 RCHN-LG----------FIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLV 411
                + +G          FIYP FS   + Q  +LLDLC LD+   NYSYSVLA  AI   
Sbjct:   481 ASFSQIGRQKSAEADDAFIYPQFSGFEFVQTSQLLDLCTLDVGMANYSYSVLAAAAISHT 540

Query:   412 CSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSD---SNELPPGPLRHNN 468
              S+E+A   SGL  + ++ C  WM  ++ ++ +K+P     + +   SN+   G +  N 
Sbjct:   541 FSREMALRCSGLDWQVIQPCARWMEPFFRVISQKAPYLQLNEQNEQVSNKFGLGLICPNI 600

Query:   469 VFDYAYSYHKHSVSMELSD-LAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSK 525
             V D ++    H+ +M++ D + +A+ A      +   +P     +    +TPP SS K
Sbjct:   601 VTDDSHIIQTHTTTMDMYDEVLMAQDAAHAMRARIQASPATALRAPESLLTPPASSHK 658
GO:0007422 "peripheral nervous system development" evidence=IEP;TAS
GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP;IDA;TAS
GO:0007277 "pole cell development" evidence=IEP
GO:0005634 "nucleus" evidence=IDA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS;NAS;IDA
GO:0001932 "regulation of protein phosphorylation" evidence=IDA
GO:0007307 "eggshell chorion gene amplification" evidence=IMP
GO:0048477 "oogenesis" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0007259 "JAK-STAT cascade" evidence=IGI
GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=NAS
GO:0007423 "sensory organ development" evidence=NAS
GO:0007155 "cell adhesion" evidence=IMP
GO:0007049 "cell cycle" evidence=IMP
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0009987 "cellular process" evidence=IMP
GO:0007400 "neuroblast fate determination" evidence=IMP
GO:0045035 "sensory organ precursor cell division" evidence=IMP
GO:0006917 "induction of apoptosis" evidence=IMP
GO:0042127 "regulation of cell proliferation" evidence=IMP
GO:0007096 "regulation of exit from mitosis" evidence=IGI
GO:0006275 "regulation of DNA replication" evidence=IMP
GO:0006974 "response to DNA damage stimulus" evidence=IMP
GO:0048665 "neuron fate specification" evidence=IDA
GO:0035019 "somatic stem cell maintenance" evidence=IDA
UNIPROTKB|F1NQ71 CCNE1 "G1/S-specific cyclin-E1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3X7 CCNE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49707 CCNE1 "G1/S-specific cyclin-E1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:88316 Ccne1 "cyclin E1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2294 Ccne1 "cyclin E1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P39949 Ccne1 "G1/S-specific cyclin-E1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-168 ccne1 "cyclin E1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9U2 CCNE1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNY7 CCNE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P47794CCNE1_DANRENo assigned EC number0.51040.26260.4560yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 4e-41
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 4e-22
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-17
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-16
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 2e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  145 bits (369), Expect = 4e-41
 Identities = 49/99 (49%), Positives = 70/99 (70%), Gaps = 2/99 (2%)

Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           R +L+DWL EV E + L  ET YL ++Y+DR+LS     VP+ +LQL+GV  L+IAAK E
Sbjct: 31  RAILIDWLVEVHEEFKLLPETLYLAVNYLDRFLSKQ--PVPRTKLQLVGVTCLLIAAKYE 88

Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT 342
           EIYPP V D+ Y+TD A + ++IL  E+ IL+ L W+++
Sbjct: 89  EIYPPSVEDFVYITDNAYTKEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 712
KOG0655|consensus408 100.0
KOG0656|consensus335 100.0
KOG0653|consensus391 99.97
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.96
KOG0654|consensus359 99.92
TIGR00569305 ccl1 cyclin ccl1. University). 99.85
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.84
KOG0834|consensus323 99.79
KOG0835|consensus367 99.76
KOG0794|consensus264 99.61
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.59
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.42
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.33
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.31
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.22
KOG2496|consensus325 99.1
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.39
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.31
KOG1597|consensus308 98.28
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 97.77
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 97.68
KOG4164|consensus497 97.41
KOG1598|consensus521 95.23
KOG1674|consensus218 94.36
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 93.77
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 89.65
PRK00423310 tfb transcription initiation factor IIB; Reviewed 88.15
KOG1924|consensus 1102 82.98
KOG1675|consensus343 80.75
KOG1924|consensus 1102 80.56
>KOG0655|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-72  Score=584.76  Aligned_cols=371  Identities=38%  Similarity=0.653  Sum_probs=312.2

Q ss_pred             hhhccccHHHHhhcccchhhhhhhhcccCCCCCCCCCCCCCccccccccCCCccccccccccccCcCCc---cccccC--
Q psy16012         30 DKRLRQDEEALAAERKPLSELITRVSLSSPGSTSSEGHDPSTTVQEEFGLLTPVELDEDSCDSLSSHSS---SWVTKL--  104 (712)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~s~---~~~~~~--  104 (712)
                      +++++.+++-...+|.-.++.|. -....+++       |...-.++-+++-+.   .|++.+.+-++.   ..+++.  
T Consensus        29 ~e~~e~~~~~~~d~ree~~k~i~-~a~d~c~~-------~vvn~~~~p~~~~~~---~d~~~~~sdf~v~~r~~~k~~v~   97 (408)
T KOG0655|consen   29 AESKESHTMVRLDEREEIEKEIE-DAFDDCEE-------PVVNGKEEPCESIDT---PDKEVQNSDFAVTKRLMDKPMVI   97 (408)
T ss_pred             hhhhccchhhhhhhHHHHHHhcc-hhhhcccc-------ccccCCcCcCcccCC---CCcccCcccccccccccCccccc
Confidence            45566666666667766666654 11222221       322222232222111   233333333332   334443  


Q ss_pred             -CCCCCCCCCCccCChhHHHHHHHhcccccccccCccccccCCCCCCCCCCchhhhhhccchhhhhhHhhhhhhcccccc
Q psy16012        105 -PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFL  183 (712)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~y~~~~~C~~~~~~  183 (712)
                       |.|-||+|.|+|||.++||.+|++||+  .|+||.||+..||.|+|+||+                             
T Consensus        98 apsr~splp~lswgn~~eVW~lM~kkee--~~l~~~~~l~qHpdlqp~mRa-----------------------------  146 (408)
T KOG0655|consen   98 APSRLSPLPCLSWGNSKEVWLLMLKKEE--RYLRDKHFLEQHPDLQPQMRA-----------------------------  146 (408)
T ss_pred             ccccCCCCccccccCHHHHHHHHHccch--hhhhhhHHHhhCCCCCHHHHH-----------------------------
Confidence             456679999999999999999999999  999999999999999999998                             


Q ss_pred             ccccCCCcccccccchhHHHHHHHHHhhhcCChHHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchh
Q psy16012        184 FTIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRE  263 (712)
Q Consensus       184 ~~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~E  263 (712)
                                                                                    +|+|||+|||+.|+||+|
T Consensus       147 --------------------------------------------------------------ILlDWlmEVCEvykLHRE  164 (408)
T KOG0655|consen  147 --------------------------------------------------------------ILLDWLMEVCEVYKLHRE  164 (408)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHHhhh
Confidence                                                                          999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccC
Q psy16012        264 TFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITP  343 (712)
Q Consensus       264 T~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~  343 (712)
                      ||||||+||||||..+.+ +.+.+|||||+||||||||+||+|||++.+|+|++||+||.++|+.||++||++|+|+|++
T Consensus       165 TFyLAvDy~DRyl~t~~~-v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~P  243 (408)
T KOG0655|consen  165 TFYLAVDYFDRYLETQVE-VSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDILTMELIILKALKWELSP  243 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH-hhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHHHHHHHHHHHHhcccccc
Confidence            999999999999998754 5599999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcChhHHHHhhCC
Q psy16012        344 VTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL  423 (712)
Q Consensus       344 pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~e~L~~vtGy  423 (712)
                      .|...||+.||++....+.    ..+++|+|++..+.+..+|||+|++|.+++.|++++||||||++....+.+.+++|+
T Consensus       244 iTii~WL~vylQv~~~n~~----~k~l~Pq~~~~efiqiaqlLDlc~ldids~~fsYrilaAAal~h~~s~e~v~kaSG~  319 (408)
T KOG0655|consen  244 ITIISWLNVYLQVDALNDA----PKVLLPQYSQEEFIQIAQLLDLCILDIDSLEFSYRILAAAALCHFTSIEVVKKASGL  319 (408)
T ss_pred             eehHHHHHHHHHHHhcCCC----CceeccccchHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhHHHHHHHcccc
Confidence            9999999999999987765    569999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccccccceecccccchhhHHHHHHHHHHHhhhccCC
Q psy16012        424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQP  503 (712)
Q Consensus       424 ~~eeL~eCve~L~~~~~~I~e~~~~~lk~~~~f~~i~~dpdsHNgV~D~s~SiQth~~sl~~l~~a~~~~~~~~~~~~~~  503 (712)
                      .|.+|++|++||++|+++|++.++..++   +|++|+.+ |+||        ||||.++++|++++...  +.+..... 
T Consensus       320 ~w~~ie~cv~wm~Pf~rvi~~~~~~~~~---~~~kI~~e-DsHn--------IQtht~~ldM~dev~~~--~~~~~~~~-  384 (408)
T KOG0655|consen  320 EWDSIEECVDWMVPFVRVIKSTSPVKLK---TFKKIPME-DSHN--------IQTHTNYLDMLDEVNYI--NTFRQKGG-  384 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchHhh---hccCCCcc-cccc--------hhhhhhHHHHHHHHHHH--HHHHHhcc-
Confidence            9999999999999999999999999998   99999999 9999        99999999999999877  33333332 


Q ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCCCC
Q psy16012        504 TTPGNRTYSVP--CDMTPPPSSSKGQTT  529 (712)
Q Consensus       504 ~~~~~~~s~~p--~~ltPP~S~~k~~~~  529 (712)
                           +.+++|  |.+|||.|..|+++.
T Consensus       385 -----ar~~~p~~~lltpp~s~~kppg~  407 (408)
T KOG0655|consen  385 -----ARSPVPNGGLLTPPKSTEKPPGK  407 (408)
T ss_pred             -----ccccCCCCCcccCcccccCCCCC
Confidence                 223333  389999999999854

>KOG0656|consensus Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 2e-51
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 6e-21
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 7e-21
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 7e-21
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 8e-21
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 8e-21
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 8e-21
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 8e-21
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 8e-21
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 9e-21
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 9e-21
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 1e-20
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 1e-20
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-20
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-20
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-20
1vin_A268 Bovine Cyclin A3 Length = 268 1e-20
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-20
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-20
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-20
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-20
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 2e-20
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 5e-20
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 1e-15
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 4e-11
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 6e-11
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-10
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-10
1f5q_B252 Crystal Structure Of Murine Gamma Herpesvirus Cycli 8e-05
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 157/253 (62%), Gaps = 21/253 (8%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           R +LLDWL EVCEVY LHRETFYL  D+ DRY++T  N+V K  LQLIG+++L IAAK+E
Sbjct: 50  RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV-KTLLQLIGISSLFIAAKLE 108
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
           EIYPPK+  +AYVTDGACS  +IL+ E+ I+  L+W ++P+T   WLNV++QV Y   + 
Sbjct: 109 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAY--LND 166
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
            H +  + P + + ++ Q   LLDLC LD+ CL + Y +LA +A+Y   S EL   +SG 
Sbjct: 167 LHEV--LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGY 224
Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRH-NNVFDY-AYSYHKHSV 481
           +   +E+C++WM  + +++               E     L+H   V D  A++   H  
Sbjct: 225 QWCDIENCVKWMVPFAMVI--------------RETGSSKLKHFRGVADEDAHNIQTHRD 270
Query: 482 SMELSDLAIAESA 494
           S++L D A A+ A
Sbjct: 271 SLDLLDKARAKKA 283
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|1F5Q|B Chain B, Crystal Structure Of Murine Gamma Herpesvirus Cyclin Complexed To Human Cyclin Dependent Kinase 2 Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-67
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 9e-04
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-56
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 4e-55
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 1e-54
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 6e-54
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-53
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-53
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 8e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 7e-08
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 2e-07
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 4e-07
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-04
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
 Score =  223 bits (569), Expect = 1e-67
 Identities = 102/255 (40%), Positives = 148/255 (58%), Gaps = 22/255 (8%)

Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           R +LLDWL EVCEVY LHRETFYL  D+ DRY++T  N V K  LQLIG+++L IAAK+E
Sbjct: 50  RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN-VVKTLLQLIGISSLFIAAKLE 108

Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
           EIYPPK+  +AYVTDGACS  +IL+ E+ I+  L+W ++P+T   WLNV++QV Y     
Sbjct: 109 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168

Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
                 + P + + ++ Q   LLDLC LD+ CL + Y +LA +A+Y   S EL   +SG 
Sbjct: 169 EV----LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGY 224

Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSM 483
           +   +E+C++WM  + +++ E                   L+H      A     H++  
Sbjct: 225 QWCDIENCVKWMVPFAMVIRET--------------GSSKLKH--FRGVADED-AHNIQT 267

Query: 484 ELSDLAIAESAKLLK 498
               L + + A+  K
Sbjct: 268 HRDSLDLLDKARAKK 282
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.97
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.97
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.97
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.97
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.96
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.91
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.82
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.57
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.03
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.01
1ais_B200 TFB TFIIB, protein (transcription initiation facto 94.8
1c9b_A207 General transcription factor IIB; protein-DNA comp 88.02
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 83.15
2ivx_A257 Cyclin-T2; transcription regulation, cell division 82.0
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
Probab=100.00  E-value=6.8e-50  Score=416.86  Aligned_cols=278  Identities=44%  Similarity=0.859  Sum_probs=246.6

Q ss_pred             CCCCCCCCCCccCChhHHHHHHHhcccccccccCccccccCCCCCCCCCCchhhhhhccchhhhhhHhhhhhhccccccc
Q psy16012        105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLF  184 (712)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~y~~~~~C~~~~~~~  184 (712)
                      |.|++|.|.|.|++.+|+|..|..++.  .+..++++++.+|+|.++||.                              
T Consensus         4 ~~~~~~~p~l~~~y~~~i~~~l~~~E~--~~~~~~~y~~~q~~i~~~~R~------------------------------   51 (283)
T 1w98_B            4 PSRGSPLPVLSWANREEVWKIMLNKEK--TYLRDQHFLEQHPLLQPKMRA------------------------------   51 (283)
T ss_dssp             ----CCSCCCSSSCHHHHHHHHHHHTT--TSCCCTTGGGGCTTCCHHHHH------------------------------
T ss_pred             CCCCCCCcchhhcCHHHHHHHHHHHHH--HhCCCchhhccCCCCCHHHHH------------------------------
Confidence            679999999999999999999999998  677788888887777666666                              


Q ss_pred             cccCCCcccccccchhHHHHHHHHHhhhcCChHHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhH
Q psy16012        185 TIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRET  264 (712)
Q Consensus       185 ~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET  264 (712)
                                                                                   ++++||++|+.+|++.++|
T Consensus        52 -------------------------------------------------------------~lv~wl~~v~~~~~l~~~t   70 (283)
T 1w98_B           52 -------------------------------------------------------------ILLDWLMEVCEVYKLHRET   70 (283)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHHHHTTCBHHH
T ss_pred             -------------------------------------------------------------HHHHHHHHHHHHhCCCccH
Confidence                                                                         9999999999999999999


Q ss_pred             HHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCC
Q psy16012        265 FYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPV  344 (712)
Q Consensus       265 ~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~p  344 (712)
                      +++||+|||||++..+ .+.++++||+|+||||||+|+||..+|.+.+|++++++.|++++|++||+.||++|+|+++++
T Consensus        71 l~lAv~~lDRfls~~~-~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~  149 (283)
T 1w98_B           71 FYLAQDFFDRYMATQE-NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPL  149 (283)
T ss_dssp             HHHHHHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCC
Confidence            9999999999999742 267999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcChhHHHHhhCCC
Q psy16012        345 TAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLR  424 (712)
Q Consensus       345 TP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~e~L~~vtGy~  424 (712)
                      ||++||..|++.++..+.    .....+++....+..+.++++++++|+.|++|+||.||||||++|+|.+.+..++|++
T Consensus       150 tp~~fL~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~~~~l~~~tg~~  225 (283)
T 1w98_B          150 TIVSWLNVYMQVAYLNDL----HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQ  225 (283)
T ss_dssp             CHHHHHHHHHHHHTCCSS----CCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSCHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHHhccCch----hhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHChHHHHHHhCCC
Confidence            999999999998876543    1223455556667778899999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccccccceecccccchhhHHHHHHH
Q psy16012        425 LESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAE  492 (712)
Q Consensus       425 ~eeL~eCve~L~~~~~~I~e~~~~~lk~~~~f~~i~~dpdsHNgV~D~s~SiQth~~sl~~l~~a~~~  492 (712)
                      +++|.+|+++|.+++..+++.+..+++   .|.++..+ +.|+        ||+|.++++|+++|+.+
T Consensus       226 ~~~i~~c~~~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--------i~~~~~~~~~l~~~~~~  281 (283)
T 1w98_B          226 WCDIENCVKWMVPFAMVIRETGSSKLK---HFRGVADE-DAHN--------IQTHRDSLDLLDKARAK  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCC---CCTTSCGG-GGGG--------BCCCCCHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHhhc---chhccCHH-hccC--------cccCcchHHHHHhhccc
Confidence            999999999999999999998888887   78888877 8888        99999999999998765
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 712
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 1e-31
d1w98b1130 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Huma 4e-31
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 1e-29
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-29
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 8e-06
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 9e-28
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-27
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-19
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-16
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-16
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score =  117 bits (295), Expect = 1e-31
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
           RT+LL W+  +CE + L +  F L++  +DRYL        K+ LQ IG A ++I +K+ 
Sbjct: 31  RTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKK--QGTKKTLQKIGAACVLIGSKIR 88

Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNI 341
            + P  VS   Y++    ++ ++++ E +IL  L+W+ 
Sbjct: 89  TVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDT 126
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.97
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.95
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.94
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.94
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.93
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.93
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.71
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.68
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.13
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.68
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 97.62
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.25
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.04
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.83
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.82
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.29
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.16
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 94.91
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 94.77
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.32
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 94.19
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 90.4
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=255.60  Aligned_cols=140  Identities=56%  Similarity=1.092  Sum_probs=132.4

Q ss_pred             CCCCCCccCChhHHHHHHHhcccccccccCccccccCCCCCCCCCCchhhhhhccchhhhhhHhhhhhhccccccccccC
Q psy16012        109 SPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTIFT  188 (712)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~y~~~~~C~~~~~~~~~~~  188 (712)
                      ||+|.+.|++.+|+|..|..++.  .+.++++++++||.+.|+||.                                  
T Consensus         1 ~~~p~~~~~~~~dI~~~l~~~E~--~~~~~~~~l~~q~~i~~~~R~----------------------------------   44 (140)
T d1w98b2           1 SPLPVLSWANREEVWKIMLNKEK--TYLRDQHFLEQHPLLQPKMRA----------------------------------   44 (140)
T ss_dssp             CCSCCCSSSCHHHHHHHHHHHTT--TSCCCTTGGGGCTTCCHHHHH----------------------------------
T ss_pred             CCCccccccCHHHHHHHHHHHHH--hhCCChHHHhCCCCCCHHHHH----------------------------------
Confidence            79999999999999999999998  788999999998888888877                                  


Q ss_pred             CCcccccccchhHHHHHHHHHhhhcCChHHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhHHHHH
Q psy16012        189 PSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLT  268 (712)
Q Consensus       189 ~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LA  268 (712)
                                                                               +++|||++|+..|+++++|+|+|
T Consensus        45 ---------------------------------------------------------~lidW~~~v~~~~~l~~et~~lA   67 (140)
T d1w98b2          45 ---------------------------------------------------------ILLDWLMEVCEVYKLHRETFYLA   67 (140)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHTTCBHHHHHHH
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHhCCChHHHHHH
Confidence                                                                     99999999999999999999999


Q ss_pred             HHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCcccc
Q psy16012        269 IDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT  342 (712)
Q Consensus       269 V~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~  342 (712)
                      |+||||||+... .+.++++||+|+||||||+|+||..+|.+.+|++++++.|+.+||++||+.||++|+|+|+
T Consensus        68 v~llDryl~~~~-~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          68 QDFFDRYMATQE-NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             HHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHhccc-cccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            999999998653 3668999999999999999999999999999999999999999999999999999999985
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure