Psyllid ID: psy16054
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 563 | 2.2.26 [Sep-21-2011] | |||||||
| P98164 | 4655 | Low-density lipoprotein r | yes | N/A | 0.129 | 0.015 | 0.345 | 4e-05 | |
| A2VEC9 | 5147 | SCO-spondin OS=Homo sapie | no | N/A | 0.083 | 0.009 | 0.448 | 0.0001 | |
| P35953 | 873 | Very low-density lipoprot | no | N/A | 0.127 | 0.082 | 0.352 | 0.0002 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.111 | 0.039 | 0.375 | 0.0002 | |
| P98155 | 873 | Very low-density lipoprot | no | N/A | 0.120 | 0.077 | 0.369 | 0.0002 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | yes | N/A | 0.110 | 0.038 | 0.391 | 0.0002 | |
| P98156 | 873 | Very low-density lipoprot | no | N/A | 0.120 | 0.077 | 0.369 | 0.0002 | |
| P98166 | 873 | Very low-density lipoprot | yes | N/A | 0.120 | 0.077 | 0.369 | 0.0002 | |
| Q9Y561 | 859 | Low-density lipoprotein r | no | N/A | 0.269 | 0.176 | 0.263 | 0.0003 | |
| Q5R662 | 859 | Low-density lipoprotein r | no | N/A | 0.269 | 0.176 | 0.263 | 0.0003 |
| >sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 95 SLKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGE 154
+ +Q++C +G ++ Q CDWK R + E +C + SCGNGE
Sbjct: 146 TCEQLTCDNGACYNT-SQKCDWKVDC---------RDSSDEINCTE-ICLHNEFSCGNGE 194
Query: 155 CIDKTLFCDDKPDCKDESDENACS 178
CI + CD DC+D SDE+AC+
Sbjct: 195 CIPRAYVCDHDNDCQDGSDEHACN 218
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Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release. Homo sapiens (taxid: 9606) |
| >sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 | Back alignment and function description |
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| >sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1 | Back alignment and function description |
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| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|P98155|VLDLR_HUMAN Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1 | Back alignment and function description |
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| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
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| >sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1 SV=1 | Back alignment and function description |
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| >sp|P98166|VLDLR_RAT Very low-density lipoprotein receptor OS=Rattus norvegicus GN=Vldlr PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y561|LRP12_HUMAN Low-density lipoprotein receptor-related protein 12 OS=Homo sapiens GN=LRP12 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5R662|LRP12_PONAB Low-density lipoprotein receptor-related protein 12 OS=Pongo abelii GN=LRP12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 563 | ||||||
| 242007864 | 1021 | conserved hypothetical protein [Pediculu | 0.959 | 0.528 | 0.877 | 0.0 | |
| 158300737 | 579 | AGAP011937-PA [Anopheles gambiae str. PE | 0.987 | 0.960 | 0.839 | 0.0 | |
| 357612406 | 565 | hypothetical protein KGM_08455 [Danaus p | 0.966 | 0.962 | 0.834 | 0.0 | |
| 270007509 | 579 | hypothetical protein TcasGA2_TC014101 [T | 0.966 | 0.939 | 0.830 | 0.0 | |
| 307195430 | 567 | hypothetical protein EAI_14445 [Harpegna | 0.976 | 0.970 | 0.811 | 0.0 | |
| 194751451 | 570 | GF10716 [Drosophila ananassae] gi|190625 | 0.952 | 0.940 | 0.843 | 0.0 | |
| 198463864 | 573 | GA21299 [Drosophila pseudoobscura pseudo | 0.952 | 0.935 | 0.839 | 0.0 | |
| 195440831 | 569 | GK25749 [Drosophila willistoni] gi|19416 | 0.952 | 0.942 | 0.843 | 0.0 | |
| 195354238 | 594 | GM16731 [Drosophila sechellia] gi|194127 | 0.980 | 0.929 | 0.816 | 0.0 | |
| 195496164 | 570 | GE22472 [Drosophila yakuba] gi|194181677 | 0.952 | 0.940 | 0.837 | 0.0 |
| >gi|242007864|ref|XP_002424738.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508231|gb|EEB12000.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/546 (87%), Positives = 509/546 (93%), Gaps = 6/546 (1%)
Query: 23 PSVEQLCEGRPPEEYFRLTIEGDCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCD 82
P +L P E L GDCRDVVRCD+AGENG+TRLA VRCPNGLAFDIDRQTCD
Sbjct: 476 PHSCKLTSKEVPGETINLQTCGDCRDVVRCDKAGENGVTRLAAVRCPNGLAFDIDRQTCD 535
Query: 83 WKTNVKNCDLLES------LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPIL 136
WKT+VKNCD LES +KQI+CPSGLAFD+DKQTCDW+AKVTNC++LD+PRKVLPIL
Sbjct: 536 WKTHVKNCDQLESECTKSGIKQITCPSGLAFDIDKQTCDWRAKVTNCDKLDKPRKVLPIL 595
Query: 137 KTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCAL 196
KTDEPVCPEGKLSCGNGECIDK LFC+DKPDCKDESDENAC+VE DPNRAPDCDPTQC L
Sbjct: 596 KTDEPVCPEGKLSCGNGECIDKELFCNDKPDCKDESDENACTVESDPNRAPDCDPTQCIL 655
Query: 197 PDCFCSADGTRIPGGIEPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGT 256
PDCFCSADGTRIPG IEPNQVPQMITITFNGAVNVDN DLY+EIFNG RQNPNGCQI+GT
Sbjct: 656 PDCFCSADGTRIPGQIEPNQVPQMITITFNGAVNVDNIDLYEEIFNGLRQNPNGCQIRGT 715
Query: 257 FFVSHKYTNYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFA 316
FFVSHKYTNY++VQ+LHR+GHEISVFSLTHKDDPKYW+ GSYDDWLAEMAG RLIIERFA
Sbjct: 716 FFVSHKYTNYSAVQDLHRRGHEISVFSLTHKDDPKYWTEGSYDDWLAEMAGARLIIERFA 775
Query: 317 NISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCN 376
N++DGSVIGVRAPYLRVGGNKQF MM DQFFVYDASITA LGRVPIWPYTLYFRMPHKCN
Sbjct: 776 NVTDGSVIGVRAPYLRVGGNKQFEMMADQFFVYDASITAPLGRVPIWPYTLYFRMPHKCN 835
Query: 377 GNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFN 436
GNA NCPS+SHP WEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQF RLLRHNFN
Sbjct: 836 GNAQNCPSRSHPVWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFARLLRHNFN 895
Query: 437 RHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTEL 496
RHF++NRAPLGLHFHASWLKSKKEF++ELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTEL
Sbjct: 896 RHFNSNRAPLGLHFHASWLKSKKEFREELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTEL 955
Query: 497 TSLRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGETIRLFTCMECPNNYPWILDPTGD 556
T+LRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGET+RLFTCMECPNNYPWILDPTGD
Sbjct: 956 TALRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPTGD 1015
Query: 557 GFSAKR 562
GFSAK+
Sbjct: 1016 GFSAKK 1021
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Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300737|ref|XP_320596.4| AGAP011937-PA [Anopheles gambiae str. PEST] gi|157013304|gb|EAA43313.4| AGAP011937-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|357612406|gb|EHJ67975.1| hypothetical protein KGM_08455 [Danaus plexippus] | Back alignment and taxonomy information |
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| >gi|270007509|gb|EFA03957.1| hypothetical protein TcasGA2_TC014101 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|307195430|gb|EFN77316.1| hypothetical protein EAI_14445 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|194751451|ref|XP_001958040.1| GF10716 [Drosophila ananassae] gi|190625322|gb|EDV40846.1| GF10716 [Drosophila ananassae] | Back alignment and taxonomy information |
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| >gi|198463864|ref|XP_001352970.2| GA21299 [Drosophila pseudoobscura pseudoobscura] gi|198151444|gb|EAL30471.2| GA21299 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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| >gi|195440831|ref|XP_002068243.1| GK25749 [Drosophila willistoni] gi|194164328|gb|EDW79229.1| GK25749 [Drosophila willistoni] | Back alignment and taxonomy information |
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| >gi|195354238|ref|XP_002043606.1| GM16731 [Drosophila sechellia] gi|194127774|gb|EDW49817.1| GM16731 [Drosophila sechellia] | Back alignment and taxonomy information |
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| >gi|195496164|ref|XP_002095576.1| GE22472 [Drosophila yakuba] gi|194181677|gb|EDW95288.1| GE22472 [Drosophila yakuba] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 563 | ||||||
| FB|FBgn0261341 | 555 | verm "vermiform" [Drosophila m | 0.824 | 0.836 | 0.862 | 4.1e-239 | |
| FB|FBgn0260653 | 541 | serp "serpentine" [Drosophila | 0.833 | 0.866 | 0.609 | 3.9e-192 | |
| FB|FBgn0032598 | 577 | ChLD3 "ChLD3" [Drosophila mela | 0.790 | 0.771 | 0.449 | 3.7e-118 | |
| FB|FBgn0052499 | 486 | Cda4 "Chitin deacetylase-like | 0.699 | 0.810 | 0.373 | 2.5e-79 | |
| FB|FBgn0051973 | 1998 | Cda5 "Chitin deacetylase-like | 0.573 | 0.161 | 0.362 | 4.8e-64 | |
| WB|WBGene00002983 | 1884 | lgx-1 [Caenorhabditis elegans | 0.648 | 0.193 | 0.336 | 3.5e-62 | |
| WB|WBGene00018607 | 2444 | F48E3.8b [Caenorhabditis elega | 0.692 | 0.159 | 0.315 | 8.6e-57 | |
| FB|FBgn0034197 | 397 | Cda9 "Chitin deacetylase-like | 0.618 | 0.876 | 0.335 | 5.8e-50 | |
| UNIPROTKB|F1S1W0 | 214 | LRP2 "Uncharacterized protein" | 0.287 | 0.757 | 0.284 | 2.2e-08 | |
| UNIPROTKB|F1N6H1 | 4626 | LRP2 "Uncharacterized protein" | 0.332 | 0.040 | 0.280 | 3.7e-07 |
| FB|FBgn0261341 verm "vermiform" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 2305 (816.5 bits), Expect = 4.1e-239, P = 4.1e-239
Identities = 400/464 (86%), Positives = 435/464 (93%)
Query: 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGEC 155
L I C GLAFDV +Q CDWK+ V +C+ L++PRK PILKTDEP+CPEGKLSCG+GEC
Sbjct: 91 LAPIRCAGGLAFDVLRQLCDWKSNVKSCDVLEKPRKAKPILKTDEPICPEGKLSCGDGEC 150
Query: 156 IDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIPGGIEPN 215
+DK LFC+ K DCKDESDENACSV++DPNRAP+CDPTQCALPDCFCSADGTRIPGGIEP
Sbjct: 151 LDKELFCNGKSDCKDESDENACSVDEDPNRAPECDPTQCALPDCFCSADGTRIPGGIEPQ 210
Query: 216 QVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNYASVQELHRK 275
QVPQMITITFNGAVNVDN DLY++IFNG RQNPNGC IKGTFFVSHKYTNY++VQ+LHR+
Sbjct: 211 QVPQMITITFNGAVNVDNIDLYEDIFNGQRQNPNGCSIKGTFFVSHKYTNYSAVQDLHRR 270
Query: 276 GHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGG 335
GHEISVFSLTHKDDP YW+GGSYDDWLAEMAG RLI+ERFANI+DGS+IG+RAPYLRVGG
Sbjct: 271 GHEISVFSLTHKDDPNYWTGGSYDDWLAEMAGSRLIVERFANITDGSIIGMRAPYLRVGG 330
Query: 336 NKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPTWEMVMN 395
NKQF MM DQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPS+SHP WEMVMN
Sbjct: 331 NKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSRSHPVWEMVMN 390
Query: 396 ELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWL 455
ELDRRDDPTFDESLPGCHMVDSCSN+ +G+QF RLLRHNFNRH+++NRAPLGLHFHASWL
Sbjct: 391 ELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARLLRHNFNRHYNSNRAPLGLHFHASWL 450
Query: 456 KSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTELTSLRDFQEWKEKCDVKGQP 515
KSKKE++DELIKFIEEML RNDV+FVT LQVIQWMQNPTEL SLRDFQEWKEKCDVKGQP
Sbjct: 451 KSKKEYRDELIKFIEEMLGRNDVFFVTNLQVIQWMQNPTELNSLRDFQEWKEKCDVKGQP 510
Query: 516 YCSLPNACPLTTRELPGETIRLFTCMECPNNYPWILDPTGDGFS 559
YCSLPNACPLTTRELPGET+RLFTCMECPNNYPWILDPTGDGFS
Sbjct: 511 YCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPTGDGFS 554
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| FB|FBgn0260653 serp "serpentine" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0032598 ChLD3 "ChLD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0052499 Cda4 "Chitin deacetylase-like 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0051973 Cda5 "Chitin deacetylase-like 5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| WB|WBGene00002983 lgx-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| WB|WBGene00018607 F48E3.8b [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| FB|FBgn0034197 Cda9 "Chitin deacetylase-like 9" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S1W0 LRP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 563 | |||
| cd10974 | 269 | cd10974, CE4_CDA_like_1, Putative catalytic domain | 1e-165 | |
| cd10975 | 268 | cd10975, CE4_CDA_like_2, Putative catalytic domain | 1e-90 | |
| cd10919 | 273 | cd10919, CE4_CDA_like, Putative catalytic domain o | 6e-85 | |
| cd10976 | 299 | cd10976, CE4_CDA_like_3, Putative catalytic domain | 5e-11 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 5e-09 | |
| cd10585 | 142 | cd10585, CE4_SF, Catalytic NodB homology domain of | 2e-08 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 2e-07 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 3e-07 | |
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 6e-07 | |
| cd10917 | 171 | cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homol | 6e-05 | |
| cd10941 | 258 | cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalyti | 1e-04 | |
| cd10967 | 202 | cd10967, CE4_GLA_like_6s, Putative catalytic NodB | 2e-04 | |
| pfam01522 | 124 | pfam01522, Polysacc_deac_1, Polysaccharide deacety | 3e-04 | |
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 0.001 |
| >gnl|CDD|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa) | Back alignment and domain information |
|---|
Score = 470 bits (1211), Expect = e-165
Identities = 166/277 (59%), Positives = 209/277 (75%), Gaps = 9/277 (3%)
Query: 218 PQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNYASVQELHRKGH 277
PQMIT+TF+ A+N +N +LY +IFNG R NPNGC IKGTFFVSH+YTNY +VQ+LHRKGH
Sbjct: 1 PQMITLTFDDAINDNNIELYKKIFNGKRNNPNGCPIKGTFFVSHEYTNYQAVQKLHRKGH 60
Query: 278 EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNK 337
EI+V S+TH DD +Y+DW+ EM G R I+E+FANI+D ++G+RAP+LRVGGN+
Sbjct: 61 EIAVHSITHNDDEN---NATYEDWVKEMVGMREILEKFANITDNEIVGMRAPFLRVGGNR 117
Query: 338 QFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPT-WEMVMNE 396
QF MM + F+YD+SITA VP+WPYTL ++MPH+C+G NCP++S P WEMV+NE
Sbjct: 118 QFEMMEEFGFLYDSSITAPPSNVPLWPYTLDYKMPHECHG--QNCPTRSFPGVWEMVLNE 175
Query: 397 LDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLK 456
LD RDDP DE L M DSC NI +G+Q L+HNF RH+ TNRAP GL+FH +WLK
Sbjct: 176 LDVRDDPQGDEPL---AMDDSCLNILSGDQVYEWLQHNFERHYLTNRAPYGLYFHTNWLK 232
Query: 457 SKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWMQNP 493
+K E L KF++E+L DVYFVTM Q IQWMQNP
Sbjct: 233 TKNELLRALQKFLDEILQLPDVYFVTMTQAIQWMQNP 269
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Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many CDA-like proteins mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, family members contain two additional domains, a chitin-binding peritrophin-A domain (ChBD) and a low-density lipoprotein receptor class A domain (LDLa), or have the ChBD domain but do not have the LDLa domain. Length = 269 |
| >gnl|CDD|200597 cd10975, CE4_CDA_like_2, Putative catalytic domain of chitin deacetylase-like proteins | Back alignment and domain information |
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| >gnl|CDD|200545 cd10919, CE4_CDA_like, Putative catalytic domain of chitin deacetylase-like proteins from insects and similar proteins | Back alignment and domain information |
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| >gnl|CDD|200598 cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins | Back alignment and domain information |
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| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
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| >gnl|CDD|213020 cd10585, CE4_SF, Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily | Back alignment and domain information |
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| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
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| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
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| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
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| >gnl|CDD|213022 cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins | Back alignment and domain information |
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| >gnl|CDD|200566 cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA) | Back alignment and domain information |
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| >gnl|CDD|200589 cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins | Back alignment and domain information |
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| >gnl|CDD|216550 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase | Back alignment and domain information |
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| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| TIGR03212 | 297 | uraD_N-term-dom putative urate catabolism protein. | 100.0 | |
| PRK15394 | 296 | 4-deoxy-4-formamido-L-arabinose-phosphoundecapreno | 99.95 | |
| TIGR03006 | 265 | pepcterm_polyde polysaccharide deactylase family p | 99.92 | |
| TIGR02764 | 191 | spore_ybaN_pdaB polysaccharide deacetylase family | 99.91 | |
| TIGR02884 | 224 | spore_pdaA delta-lactam-biosynthetic de-N-acetylas | 99.9 | |
| TIGR02873 | 268 | spore_ylxY probable sporulation protein, polysacch | 99.89 | |
| PF01522 | 123 | Polysacc_deac_1: Polysaccharide deacetylase; Inter | 99.88 | |
| COG0726 | 267 | CDA1 Predicted xylanase/chitin deacetylase [Carboh | 99.8 | |
| PRK14581 | 672 | hmsF outer membrane N-deacetylase; Provisional | 99.61 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 99.6 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 99.02 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.95 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 98.62 | |
| PF10096 | 243 | DUF2334: Uncharacterized protein conserved in bact | 98.17 | |
| PF01607 | 53 | CBM_14: Chitin binding Peritrophin-A domain; Inter | 97.9 | |
| COG3233 | 233 | Predicted deacetylase [General function prediction | 97.74 | |
| PF09960 | 585 | DUF2194: Uncharacterized protein conserved in bact | 97.68 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 97.5 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 97.49 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 97.48 | |
| smart00494 | 56 | ChtBD2 Chitin-binding domain type 2. | 97.25 | |
| KOG1215|consensus | 877 | 97.06 | ||
| KOG1215|consensus | 877 | 97.02 | ||
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 96.83 | |
| PF04748 | 213 | Polysacc_deac_2: Divergent polysaccharide deacetyl | 96.38 | |
| PF03065 | 360 | Glyco_hydro_57: Glycosyl hydrolase family 57; Inte | 95.74 | |
| PF11959 | 133 | DUF3473: Domain of unknown function (DUF3473); Int | 94.81 | |
| COG1449 | 615 | Alpha-amylase/alpha-mannosidase [Carbohydrate tran | 94.21 | |
| PF15421 | 425 | Polysacc_deac_3: Putative polysaccharide deacetyla | 92.48 | |
| COG2861 | 250 | Uncharacterized protein conserved in bacteria [Fun | 92.42 | |
| KOG2397|consensus | 480 | 92.3 | ||
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 86.05 |
| >TIGR03212 uraD_N-term-dom putative urate catabolism protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=303.54 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=181.4
Q ss_pred eEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCH
Q psy16054 221 ITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGSY 298 (563)
Q Consensus 221 V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~ 298 (563)
-.+|+=+..+.+....+++||++ ++|||||||+|... ++++|++|.++|||||+||++|..+. .++.
T Consensus 66 ~~~s~~~YG~rvG~~RiLdlL~~-------~gv~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~~~~----~ls~ 134 (297)
T TIGR03212 66 SMESLYEYGSRAGFWRLLRLFTE-------RGIPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWIDYQ----DMDE 134 (297)
T ss_pred cchhhhhhcchhCHHHHHHHHHH-------cCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCcccc----cCCH
Confidence 35667776666778889999974 79999999999985 67999999999999999999999864 6899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHH-cCCeEEeecCCCCCCCCccceeccCCCCCCcCC
Q psy16054 299 DDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTD-QFFVYDASITASLGRVPIWPYTLYFRMPHKCNG 377 (563)
Q Consensus 299 ~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e-~Gf~YDsS~~~~~~~~p~wPytld~~~p~~c~~ 377 (563)
++++++|.++.++|++++|+ .|+|||++ ..+. +|+++|++ .||+|+||++++ +.|||--+
T Consensus 135 ~~e~~~i~~s~~~i~~~tG~---~P~G~~~~--~~s~-~T~~LL~e~~Gf~Y~sd~~~d--D~Py~~~~----------- 195 (297)
T TIGR03212 135 AQEREHIAEAIRLHTEVTGE---RPLGWYTG--RTSP-NTRRLVAEEGGFLYDADSYAD--DLPYWDEV----------- 195 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCceEECC--CCCh-hHHHHHHHhcCceEeCchhhc--CCCeEeec-----------
Confidence 99999999999999998885 48999974 6674 69999999 999999999875 44444332
Q ss_pred CCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCC---cceEEeecccc
Q psy16054 378 NAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNR---APLGLHFHASW 454 (563)
Q Consensus 378 ~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nr---ap~~l~lH~~~ 454 (563)
...++++||++ |+.+|. .|.. .....++++++++|+++|+.+|++.+ ..|+|.|| ++
T Consensus 196 -------~~~~~l~lP~~-~~~nD~-~~~~----------~~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lH-p~ 255 (297)
T TIGR03212 196 -------AGRPQLIVPYT-LDANDM-RFAT----------PQGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLH-CR 255 (297)
T ss_pred -------CCCCeEEEecc-cccCcH-HHHh----------ccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecC-cc
Confidence 11236779987 444442 2210 11235789999999999999998643 36799999 88
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHHHhhCC
Q psy16054 455 LKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWMQNP 493 (563)
Q Consensus 455 l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~w~~~p 493 (563)
++|+|+|+.+|++||+||++++||||+|.+||++|++.-
T Consensus 256 i~G~p~R~~~L~~~l~~i~~~~~VW~at~~eIA~~~~~~ 294 (297)
T TIGR03212 256 LVGRPGRIAALQRFLDYVQSHDKVWVARRIDIARHWHET 294 (297)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEcHHHHHHHHHHh
Confidence 999999999999999999999999999999999998543
|
This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family. |
| >PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional | Back alignment and domain information |
|---|
| >TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB | Back alignment and domain information |
|---|
| >TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase | Back alignment and domain information |
|---|
| >TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family | Back alignment and domain information |
|---|
| >PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase | Back alignment and domain information |
|---|
| >COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14581 hmsF outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function | Back alignment and domain information |
|---|
| >PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] | Back alignment and domain information |
|---|
| >COG3233 Predicted deacetylase [General function prediction only] | Back alignment and domain information |
|---|
| >PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein | Back alignment and domain information |
|---|
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
| >smart00494 ChtBD2 Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >KOG1215|consensus | Back alignment and domain information |
|---|
| >KOG1215|consensus | Back alignment and domain information |
|---|
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ | Back alignment and domain information |
|---|
| >PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised | Back alignment and domain information |
|---|
| >COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF15421 Polysacc_deac_3: Putative polysaccharide deacetylase; PDB: 4DWE_A | Back alignment and domain information |
|---|
| >COG2861 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG2397|consensus | Back alignment and domain information |
|---|
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 563 | ||||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 8e-04 |
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 3e-09
Identities = 82/570 (14%), Positives = 164/570 (28%), Gaps = 173/570 (30%)
Query: 35 EEYFR--LTIEGDCRDVVRCDQAGENGITRLAGVRCPNG----LAF--DIDRQTCDW-KT 85
++ + L+ E + ++ A +G RL F ++ R + +
Sbjct: 39 QDMPKSILSKE-EIDHIIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 86 NVKNCDLLESLKQ---ISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPV 142
+K S+ I L D K V+ + R+ L L+ + V
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 143 CPEGKLSCGNGECIDKTLF----CDDKP---------------DCKDESDENACSVEQDP 183
+G L G KT C +C +E
Sbjct: 154 LIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQ 203
Query: 184 NRAPDCDPTQCALPDCFCSADGTRIPGGIEPNQVPQMITITFNGAV---------NVDNS 234
DP + D + I + + + + NV N+
Sbjct: 204 KLLYQIDPNWTSRSD-----HSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 235 DLYDEIFNGNRQNPNGCQI------KG-TFFVSHKYTNYASV------------------ 269
++ FN C+I K T F+S T + S+
Sbjct: 257 KAWNA-FNL------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 270 ------QELHR---KGH--EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANI 318
Q+L R + +S+ + + +D W D+W + ++ I
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWK------HVNCDKLTTI 358
Query: 319 SDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITAS-LGRVPIWPYTLYFRMPHKCNG 377
+ S+ + R K F ++ F A I L IW +
Sbjct: 359 IESSLNVLEPAEYR----KMFDRLS--VFPPSAHIPTILLSL--IWFDVIK--------- 401
Query: 378 NAHNCPSKSHPTWEMVMNELDR-----RDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLR 432
+ +V+N+L + + S+P ++ ++
Sbjct: 402 ---SDV-------MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 433 H-NFNRHFSTNRAP-----------LGLHF-HASWLKSKKEFKDELI--KFIEEMLDRND 477
H N + F ++ +G H + + F+ + +F+E+ + R+D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHD 510
Query: 478 VYFVTMLQVIQWMQNPTELTSLRDFQEWKE 507
W + + L +L+ + +K
Sbjct: 511 ST--------AWNASGSILNTLQQLKFYKP 532
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
| >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Length = 311 | Back alignment and structure |
|---|
| >3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Length = 326 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| 3qbu_A | 326 | Putative uncharacterized protein; metallo enzyme, | 100.0 | |
| 3s6o_A | 321 | Polysaccharide deacetylase family protein; ssgcid, | 100.0 | |
| 3rxz_A | 300 | Polysaccharide deacetylase; structural genomics, P | 100.0 | |
| 3cl6_A | 308 | PUUE allantoinase; URIC acid, nitrogen fixation, h | 100.0 | |
| 2cc0_A | 195 | Acetyl-xylan esterase; hydrolase, carbohydrate est | 99.92 | |
| 1ny1_A | 240 | Probable polysaccharide deacetylase PDAA; structur | 99.91 | |
| 2vyo_A | 254 | ECU11_0510, chitooligosaccharide deacetylase; CE4 | 99.91 | |
| 2w3z_A | 311 | Putative deacetylase; PGDA, glcnac DE-N-acetylase, | 99.91 | |
| 2y8u_A | 230 | Chitin deacetylase; hydrolase; 1.99A {Emericella n | 99.91 | |
| 2iw0_A | 254 | Chitin deacetylase; hydrolase, chitin DE-N-acetyla | 99.9 | |
| 2j13_A | 247 | Polysaccharide deacetylase; family 4, peptidoglyca | 99.9 | |
| 2c71_A | 216 | Glycoside hydrolase, family 11\:clostridium cellul | 99.9 | |
| 2c1i_A | 431 | Peptidoglycan glcnac deacetylase; carbohydrate est | 99.88 | |
| 3hft_A | 257 | WBMS, polysaccharide deacetylase involved in O-AN | 99.84 | |
| 3vus_A | 268 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 99.76 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.7 | |
| 4f9d_A | 618 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 99.65 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.64 | |
| 4hd5_A | 360 | Polysaccharide deacetylase; TIM barrel, hydrolase; | 99.64 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.62 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.61 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.58 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.31 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.29 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 99.11 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 99.04 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 99.03 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 99.02 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 99.01 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 99.0 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.96 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.96 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.93 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 98.91 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.9 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 98.89 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.86 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 98.85 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 98.83 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.41 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 98.31 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 98.3 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 98.24 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 98.15 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 98.13 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.02 | |
| 1k1x_A | 659 | 4-alpha-glucanotransferase; 2.40A {Thermococcus li | 97.7 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 97.7 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 97.7 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 97.66 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 97.64 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 97.54 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 97.54 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 97.53 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 97.52 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 97.5 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 97.45 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 97.27 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 97.26 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 97.25 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 97.21 | |
| 2b5d_X | 528 | Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. | 97.2 | |
| 3n98_A | 562 | Alpha-amylase, GH57 family; GH57 family member, br | 96.97 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 96.97 | |
| 2nly_A | 245 | BH1492 protein, divergent polysaccharide deacetyla | 96.67 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 96.37 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 96.32 | |
| 4dwe_A | 480 | Uncharacterized protein; hypothetical protein, str | 95.72 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 95.61 | |
| 2qv5_A | 261 | AGR_C_5032P, uncharacterized protein ATU2773; stru | 94.87 | |
| 3p0b_A | 540 | TT1467 protein; glycoside hydrolase GH57, glycogen | 94.27 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 94.07 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 90.95 | |
| 3bvx_A | 1045 | Alpha-mannosidase 2; family 38 glycoysl hydrolase, | 84.47 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 84.09 |
| >3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=368.27 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=199.4
Q ss_pred CchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q psy16054 233 NSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRL 310 (563)
Q Consensus 233 ~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~ 310 (563)
.+..+++||++ +++||||||++..+ ++++|++|+++|||||+||++|..+. .++.+++++||.++++
T Consensus 75 ~~~rlL~lL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~----~~s~~~~~~ei~~~~~ 143 (326)
T 3qbu_A 75 GIPRLLKLFKK-------YHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPI----AMSTKQEEDVLLKSVE 143 (326)
T ss_dssp HHHHHHHHHHH-------TTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCGG----GSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------cCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcChh----hCCHHHHHHHHHHHHH
Confidence 35567888874 78999999999875 67999999999999999999999764 6899999999999999
Q ss_pred HHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCC-CCcccee------ccCCCCCCcCCCCCCCC
Q psy16054 311 IIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGR-VPIWPYT------LYFRMPHKCNGNAHNCP 383 (563)
Q Consensus 311 ~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~-~p~wPyt------ld~~~p~~c~~~~~pcp 383 (563)
+|++++|. .++|||+|+++.+. +++++|+++||.||||+..+ + .|||+++ +||..++.| ++.|++
T Consensus 144 ~l~~~~G~---~p~~fr~P~g~~~~-~~~~~l~e~G~~ydss~~~~--D~~Py~~~~~~~~~~~d~~~~~~~--w~~P~~ 215 (326)
T 3qbu_A 144 LIKDLTGK---APTGYVAPWWEFSN-ITNELLLKHGFKYDHSLMHN--DFTPYYVRVGDSWSKIDYSLEAKD--WMKPLI 215 (326)
T ss_dssp HHHHHHSS---CCCEECCGGGCCSS-HHHHHHHTTTCCEECCCCSC--SSSCEEEEECCBCCCCCTTSCGGG--TCCCCB
T ss_pred HHHHHHCC---CCcEEECCCCCCCH-HHHHHHHHcCCEEEeeccCC--CCCCeeeecCCccccccccccchh--hccccc
Confidence 99999885 48999999999994 79999999999999999864 5 7898887 677777666 467786
Q ss_pred CC-CCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHcc-CCcceEEeeccccccCchhH
Q psy16054 384 SK-SHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFST-NRAPLGLHFHASWLKSKKEF 461 (563)
Q Consensus 384 ~~-~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~-nrap~~l~lH~~~l~g~p~r 461 (563)
.. ..++||||++ |+.+|.|.|.... .+ .......++++++++|+++|+++|++ ++++++|++| +++.|+|.|
T Consensus 216 ~g~~~~l~eiP~~-~~~~D~p~~~f~~-~~---~~~~g~~~~~~~~~~l~~~Fd~~y~~~~~~~~~i~lH-~~~~g~p~r 289 (326)
T 3qbu_A 216 RGVETNLVEIPAN-WYLDDLPPMMFIK-KS---PNSFGFVSPRDIGQMWIDQFDWVYREMDYAVFSMTIH-PDVSARPQV 289 (326)
T ss_dssp CCEEEEEEECCCC-GGGBSHHHHCCCT-TC---TTCCCCSCHHHHHHHHHHHHHHHHHHCSEEEEEEEEC-HHHHTSHHH
T ss_pred CCCCCCeEEEcCc-cccCcchhhhccc-cc---cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-ccccCCHHH
Confidence 54 3469999998 4544545443210 00 01123478999999999999999995 5789999999 557889999
Q ss_pred HHHHHHHHHHHHcCCCeEEEeHHHHHHHhhCCchhhh
Q psy16054 462 KDELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTELTS 498 (563)
Q Consensus 462 ~~al~~fl~~i~~~~dVwfvT~~ei~~w~~~p~~~~~ 498 (563)
+++|++||++|++++||||||.+|||+||+++.|.++
T Consensus 290 ~~~le~fl~~i~~~~~Vw~~t~~eia~~~~~~~p~~~ 326 (326)
T 3qbu_A 290 LLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK 326 (326)
T ss_dssp HHHHHHHHHHHTTSTTEEECCHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHhCCCEEEEcHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999998888653
|
| >3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 | Back alignment and structure |
|---|
| >3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A | Back alignment and structure |
|---|
| >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 | Back alignment and structure |
|---|
| >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
| >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} | Back alignment and structure |
|---|
| >2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} | Back alignment and structure |
|---|
| >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A | Back alignment and structure |
|---|
| >2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A | Back alignment and structure |
|---|
| >3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
| >3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
| >4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus} | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
| >2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 | Back alignment and structure |
|---|
| >3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A | Back alignment and structure |
|---|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 | Back alignment and structure |
|---|
| >3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... | Back alignment and structure |
|---|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 563 | ||||
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 7e-09 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-08 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-08 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 2e-08 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-08 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-08 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 5e-08 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 3e-07 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 2e-06 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-06 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 6e-06 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 1e-05 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 2e-05 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 2e-05 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 4e-05 | |
| d2iw0a1 | 220 | c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthra | 0.002 | |
| d2c1ia1 | 196 | c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetyla | 0.002 | |
| d1dqca_ | 73 | g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple | 0.004 |
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (118), Expect = 7e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSV 179
C + + C +G+CI + CD DC D SDE +C V
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 39
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
| >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Length = 220 | Back information, alignment and structure |
|---|
| >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 | Back information, alignment and structure |
|---|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| d1z7aa1 | 301 | Hypothetical protein PA1517 {Pseudomonas aeruginos | 100.0 | |
| d2cc0a1 | 192 | Acetyl-xylan esterase {Streptomyces lividans [TaxI | 99.91 | |
| d2iw0a1 | 220 | Chitin deacetylase {Bean anthracnose fungus (Colle | 99.9 | |
| d2c1ia1 | 196 | Peptidoglycan GlcNAc deacetylase C-terminal domain | 99.89 | |
| d2j13a1 | 235 | Putative polysaccharide deacetylase BA0424 {Bacill | 99.89 | |
| d2c71a1 | 204 | Xylanase XynA C-terminal domain {Clostridium therm | 99.89 | |
| d1ny1a_ | 235 | Probable polysaccharide deacetylase PdaA {Bacillus | 99.89 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.19 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 99.14 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 99.14 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 99.09 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 99.06 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 99.02 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 99.02 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 99.02 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.0 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.97 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.95 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.93 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.81 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.8 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.79 | |
| d1k1xa3 | 310 | 4-alpha-glucanotransferase, N-terminal domain {Arc | 98.26 | |
| d1dqca_ | 73 | Tachycitin {Horseshoe crab (Tachypleus tridentatus | 98.03 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 97.81 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 97.8 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 97.73 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 97.64 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 97.63 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 97.59 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 97.56 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 97.5 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 97.48 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 97.48 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 97.45 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 97.3 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 97.22 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 97.21 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 97.2 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 97.0 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 96.58 | |
| d2nlya1 | 224 | Hypothetical protein BH1492 {Bacillus halodurans [ | 96.38 | |
| d1dqca_ | 73 | Tachycitin {Horseshoe crab (Tachypleus tridentatus | 92.48 | |
| g1o7d.3 | 330 | Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax | 88.56 |
| >d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: PA1517-like domain: Hypothetical protein PA1517 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.8e-37 Score=310.00 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=173.8
Q ss_pred chHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHHH
Q psy16054 234 SDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLI 311 (563)
Q Consensus 234 ~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~~ 311 (563)
...+++||++ ++||+||||++... .+++|++|.++|||||+|||.|... ..++.++++++|.++.++
T Consensus 80 ~~Rll~ll~~-------~~i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG~~h~~~----~~l~~~~e~~~i~~~~~~ 148 (301)
T d1z7aa1 80 VWRLLKLFKR-------RNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWIDY----QYMDEAQEREHMLEAIRI 148 (301)
T ss_dssp HHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCC----TTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-------hCCCcccchhHHHHHHChHHHHHHHHcCceeecCccccccc----ccCCHHHHHHHHHHHHHH
Confidence 4557888874 79999999999985 6699999999999999999999876 369999999999999999
Q ss_pred HHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCCcCCCCCCCCCCCCCcEE
Q psy16054 312 IERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPTWE 391 (563)
Q Consensus 312 l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~c~~~~~pcp~~~~~lwe 391 (563)
|++++| ++++|||+|.++. +++..+|+++||+|+||++++ +.||| +.. .+...++++
T Consensus 149 l~~~tG---~~p~G~~~p~~~~--~~t~~lL~e~Gf~Y~sd~~~d--D~Py~---~~~-------------~~~~~~~l~ 205 (301)
T d1z7aa1 149 LTELTG---QRPVGWYTGRTGP--NTRRLVMEEGGFLYDSDTYDD--DLPYW---DPA-------------STAEKPHLV 205 (301)
T ss_dssp HHHHHS---SCCCEECCSSCCT--THHHHHHHHCCCSEECCCCCC--SSCEE---CTT-------------CCSSSCCEE
T ss_pred HHHhcc---CCcccccCCCCCC--ccHHHHHHhcCCEEECCCCCC--CCccc---eec-------------cCCCCCeEE
Confidence 999888 4689999999874 358889999999999999875 44444 211 122346999
Q ss_pred EeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccC-Cc--ceEEeeccccccCchhHHHHHHHH
Q psy16054 392 MVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTN-RA--PLGLHFHASWLKSKKEFKDELIKF 468 (563)
Q Consensus 392 iP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~n-ra--p~~l~lH~~~l~g~p~r~~al~~f 468 (563)
||++. ..+|.+.+. ..+..++++++++++++|+++|++. ++ .|+|.|| +|++|+|+|+.+|++|
T Consensus 206 iP~~~-~~~D~~~~~-----------~~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lH-P~i~G~P~Ri~~Le~~ 272 (301)
T d1z7aa1 206 IPYTL-DTNDMRFTQ-----------VQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLH-CRLIGRPARMAALERF 272 (301)
T ss_dssp CCCCS-SSBGGGGGS-----------TTCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEE-TTTTTSHHHHHHHHHH
T ss_pred ecccc-ccchhhhhh-----------cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeeC-CcccCCHHHHHHHHHH
Confidence 99874 443433220 1124578899999999999999753 22 5789999 8899999999999999
Q ss_pred HHHHHcCCCeEEEeHHHHHHHhhCC
Q psy16054 469 IEEMLDRNDVYFVTMLQVIQWMQNP 493 (563)
Q Consensus 469 l~~i~~~~dVwfvT~~ei~~w~~~p 493 (563)
|+||++++||||+|.+||++|++..
T Consensus 273 l~~i~~~~dVW~at~~eIA~~~~~~ 297 (301)
T d1z7aa1 273 IQYAQSHDKVWFARREDIARHWHRE 297 (301)
T ss_dssp HHHHHTSSSEEECCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCHHHHHHHHHHH
Confidence 9999999999999999999988543
|
| >d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
| >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} | Back information, alignment and structure |
|---|
| >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
| >d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
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| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
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| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
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