Psyllid ID: psy16082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEEHHHHHHHHHHHHHHHHHHHHHHcccEcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mdtgdeyevgdsgqpddgnchagrrprcrrkkvhhstvvnpdsnlYFYWLLIITCCVLYNLWTLIVRQSfpelqengakfwffcdyttdtfIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLlpldllyfkigvnpmlrfprflkvyRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAegfygdwvypyrvgeFSTLTRKYLGSIYWSTLtlttigdlpqpetdve
Flexible Loop (DISEMBL)
mdtgdeyevgdsgqpddgnchagrrprcrrkkvhhstvvnpdsnlYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNpmlrfprflkVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTltlttigdlpqpetdve
Low Complexity Region (SEG)
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMldiisllpldllYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE
Disordered region (IsUnstruct)
**********************************HSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGD*********
Disordered Region (DISOPRED)
*********************************HHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGD**QP*****
Disordered Region (DISEMBL)
**************PDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE
Disordered Region (DISPRO)
*******************************KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q90805	735	Cyclic nucleotide-gated c	yes	N/A	0.853	0.292	0.490	1e-54
Q9JJZ8	631	Cyclic nucleotide-gated c	yes	N/A	0.920	0.367	0.463	6e-53
Q90980	645	Cyclic nucleotide-gated c	no	N/A	0.853	0.333	0.481	9e-53
Q29441	706	Cyclic nucleotide-gated c	yes	N/A	0.861	0.307	0.472	3e-52
Q16281	694	Cyclic nucleotide-gated c	yes	N/A	0.861	0.312	0.481	9e-52
P29973	690	cGMP-gated cation channel	no	N/A	0.853	0.311	0.463	2e-50
Q62927	683	cGMP-gated cation channel	no	N/A	0.853	0.314	0.463	2e-50
P29974	684	cGMP-gated cation channel	no	N/A	0.853	0.314	0.463	1e-49
Q28279	691	cGMP-gated cation channel	no	N/A	0.853	0.311	0.463	1e-49
Q00194	690	cGMP-gated cation channel	no	N/A	0.853	0.311	0.454	2e-48

>sp|Q90805|CNG1_CHICK Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 145/218 (66%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct: 202 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 261

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+FRTG+LEQGL+V +  KL  HY ++  F LD++SLLP DL Y K+G+N P LRF R L
Sbjct: 262 VRFRTGFLEQGLLVKDEKKLRDHYTQTVQFKLDVLSLLPTDLAYLKLGLNYPELRFNRLL 321

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           ++ R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF  D WVYP 
Sbjct: 322 RIARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKVIGFGTDSWVYPN 381

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
             + E+  L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 382 VSIPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 419

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors.
Gallus gallus (taxid: 9031)

>sp|Q9JJZ8|CNGA3_MOUSE Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/246 (46%), Positives = 149/246 (60%), Gaps = 14/246 (5%)

Query: 10  GDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQS 69
           G+   PD G    GR+            VV+P SN+Y+ WL  I   V YN   L+ R  
Sbjct: 84  GEQKPPDGGE---GRK--------EEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRAC 132

Query: 70  FPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFML 129
           F ELQ      W   DY+ D   VLD+LV+ RTG+LEQGLMV ++ +L  HY K+  F L
Sbjct: 133 FDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKL 192

Query: 130 DIISLLPLDLLYFKIGVN-PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILL 188
           DI+SL+P DL Y K+GVN P LRF R LK  R+++++   E+RT YPN++R+ NLV   L
Sbjct: 193 DILSLIPTDLAYLKLGVNYPELRFNRLLKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTL 252

Query: 189 IFAHWFGCFYYLLSQAEGFYGD-WVYPYRVG-EFSTLTRKYLGSIYWSTLTLTTIGDLPQ 246
           I  HW  C Y+ +S+  GF  D WVYP     E++ L+RKY+ S+YWSTLTLTTIG+ P 
Sbjct: 253 IIIHWNACIYFAISKFIGFGTDSWVYPNTSKPEYARLSRKYIYSLYWSTLTLTTIGETPP 312

Query: 247 PETDVE 252
           P  D E
Sbjct: 313 PVKDEE 318

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones (By similarity). Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3.

Mus musculus (taxid: 10090)

>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1

 Score =  206 bits (525), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 141/218 (64%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           +++P  N+Y+ WL  IT  V+YN   +I R  F ELQ +    WF  DY +D   + D+ 
Sbjct: 109 IIDPAGNMYYNWLFCITMPVMYNWTMIIARACFDELQNDYLAVWFIVDYVSDVIYIADMF 168

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V    KL   Y  S  F LD +S++P DLLYFK+G+N P LR  R L
Sbjct: 169 VRTRTGYLEQGLLVKEEQKLKEKYKSSLQFKLDFLSIIPTDLLYFKLGLNYPELRINRLL 228

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYPY 215
           +V R+++++   E+RT YPN++R+ NLV  ++I  HW  C YY +S+A GF  D WVYP 
Sbjct: 229 RVARMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGFGADTWVYPN 288

Query: 216 RV-GEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               EF+ LTRKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 289 TSHPEFARLTRKYVYSLYWSTLTLTTIGETPPPVRDSE 326

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Gallus gallus (taxid: 9031)

>sp|Q29441|CNGA3_BOVIN Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus GN=CNGA3 PE=2 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 145/220 (65%), Gaps = 3/220 (1%)

Query: 36  STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
           S V++P SN+Y++WL +I   V YN   L+ R  F ELQ      W   DY+ D    +D
Sbjct: 177 SVVMDPSSNMYYHWLTVIAVPVFYNWCLLVCRACFDELQSEHLMLWLVLDYSADILYGMD 236

Query: 96  ILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPR 154
           +LV+ RTG+LEQGLMV ++ +L  HY ++  F LD++SL+P DL YFK+G+N P LRF R
Sbjct: 237 MLVRARTGFLEQGLMVMDASRLWKHYTQTLHFKLDVLSLVPTDLAYFKLGMNYPELRFNR 296

Query: 155 FLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVY 213
            LK+ R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF  D WVY
Sbjct: 297 LLKLARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKFIGFGTDSWVY 356

Query: 214 PYRVG-EFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
           P     E+  L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 357 PNVSNPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 396

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3 (By similarity). Could be responsible for cGMP-induced calcium entry in cells other than sensory cells. Might be involved in chemotaxis of sperm.

Bos taurus (taxid: 9913)

>sp|Q16281|CNGA3_HUMAN Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2

 Score =  203 bits (517), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 141/220 (64%), Gaps = 3/220 (1%)

Query: 36  STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
           + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ D   VLD
Sbjct: 158 AIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLD 217

Query: 96  ILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPR 154
           +LV+ RTG+LEQGLMV ++ +L  HY  +  F LD++SL+P DL Y K+G N P +RF R
Sbjct: 218 VLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNR 277

Query: 155 FLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVY 213
            LK  R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF  D WVY
Sbjct: 278 LLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKFIGFGTDSWVY 337

Query: 214 P-YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
           P   + E   L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 338 PNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 377

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.

Homo sapiens (taxid: 9606)

>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1 SV=3

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 140/218 (64%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   ++D+ 
Sbjct: 157 VIDPSGNTYYNWLFCITLPVMYNWTMVIARACFDELQSDYLEYWLILDYVSDIVYLIDMF 216

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V   +KL   Y  +  F LD++SL+P DLLYFK+G N P +R  R L
Sbjct: 217 VRTRTGYLEQGLLVKEELKLINKYKSNLQFKLDVLSLIPTDLLYFKLGWNYPEIRLNRLL 276

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           +  R+++++   E+RT YPN++R+ NLV  ++I  HW  C +Y +S+A GF  D WVYP 
Sbjct: 277 RFSRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVFYSISKAIGFGNDTWVYPD 336

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               EF  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 337 INDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVRDSE 374

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Homo sapiens (taxid: 9606)

>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1 PE=2 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 141/218 (64%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N+Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   + D+ 
Sbjct: 148 VIDPSGNMYYNWLFCITLPVMYNWTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADMF 207

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V + +KL   Y  +  F LD++S++P DLLYFK G N P +R  R L
Sbjct: 208 VRTRTGYLEQGLLVKDELKLIEKYKANLQFKLDVLSVIPTDLLYFKFGWNYPEIRLNRLL 267

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           ++ R+++++   E+RT YPN++R+ NLV  ++I  HW  C YY +S+A GF  D WVYP 
Sbjct: 268 RISRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGFGNDTWVYPD 327

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               EF  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 328 VNDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVLDSE 365

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Rattus norvegicus (taxid: 10116)

>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2 SV=2

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 139/218 (63%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   + D+ 
Sbjct: 149 VIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADMF 208

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V + MKL   Y  +  F LD++S++P DLLY K G N P +R  R L
Sbjct: 209 VRTRTGYLEQGLLVKDRMKLIEKYKANLQFKLDVLSVIPTDLLYIKFGWNYPEIRLNRLL 268

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           ++ R+++++   E+RT YPN++R+ NLV  ++I  HW  C YY +S+A GF  D WVYP 
Sbjct: 269 RISRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGFGNDTWVYPD 328

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               EF  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 329 VNDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVLDSE 366

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Mus musculus (taxid: 10090)

>sp|Q28279|CNGA1_CANFA cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 140/218 (64%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N+Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   +LD+ 
Sbjct: 156 VIDPAGNMYYNWLFCITLPVMYNWTMVIARACFDELQSDYLEYWIIFDYLSDIVYLLDMF 215

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V    KL   Y  +  F LD +S++P DLLYFK+G N P +R  R L
Sbjct: 216 VRTRTGYLEQGLLVREEAKLIEKYKSNLQFKLDFLSVIPTDLLYFKLGWNYPEIRLNRLL 275

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           ++ R+++++   E+RT YPN++R+ NLV  ++I  HW  C Y+ +S+A GF  D WVYP 
Sbjct: 276 RISRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYFSISKAIGFGNDTWVYPD 335

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               EF  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 336 VNDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVRDSE 373

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Canis familiaris (taxid: 9615)

>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 138/218 (63%), Gaps = 3/218 (1%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   +LD+ 
Sbjct: 155 VIDPSGNTYYNWLFCITLPVMYNWTMIIARACFDELQSDYLEYWLAFDYLSDVVYLLDMF 214

Query: 98  VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-PMLRFPRFL 156
           V+ RTGYLEQGL+V    KL   Y  +  F LD++S++P DLLY K G N P +R  R L
Sbjct: 215 VRTRTGYLEQGLLVKEERKLIDKYKSTFQFKLDVLSVIPTDLLYIKFGWNYPEIRLNRLL 274

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
           ++ R+++++   E+RT YPN++R+ NLV  ++I  HW  C Y+ +S+A GF  D WVYP 
Sbjct: 275 RISRMFEFFQRTETRTNYPNIFRISNLVMYIIIIIHWNACVYFSISKAIGFGNDTWVYPD 334

Query: 215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               +F  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct: 335 VNDPDFGRLARKYVYSLYWSTLTLTTIGETPPPVRDSE 372

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
242025178	1908	Thyroid receptor-interacting protein, pu	0.988	0.130	0.686	1e-105
347969731	1790	AGAP003349-PB [Anopheles gambiae str. PE	0.964	0.135	0.680	1e-103
347969733	1391	AGAP003349-PA [Anopheles gambiae str. PE	0.964	0.174	0.680	1e-103
157103345	1328	cyclic-nucleotide-gated cation channel [	0.960	0.182	0.676	1e-102
170050110	1338	cyclic-nucleotide-gated cation channel [	0.960	0.180	0.672	1e-101
195432282	1812	GK20012 [Drosophila willistoni] gi|19416	0.964	0.134	0.661	1e-101
442616418	1825	CNG channel-like, isoform H [Drosophila	0.857	0.118	0.726	4e-99
442616416	1881	CNG channel-like, isoform G [Drosophila	0.857	0.114	0.726	4e-99
45549131	1453	CNG channel-like, isoform C [Drosophila	0.857	0.148	0.726	4e-99
45551460	1853	CNG channel-like, isoform B [Drosophila	0.857	0.116	0.726	4e-99

>gi|242025178|ref|XP_002433003.1| Thyroid receptor-interacting protein, putative [Pediculus humanus corporis] gi|212518512|gb|EEB20265.1| Thyroid receptor-interacting protein, putative [Pediculus humanus corporis]

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/252 (68%), Positives = 205/252 (81%), Gaps = 3/252 (1%)

Query: 1   MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYN 60
           +DTGD+ E  + G       H   R R +R+K    TVVNPD N YFYWL+ +T CVLYN
Sbjct: 9   VDTGDDTETANGGPQSH---HEVSRRRRKRRKELSKTVVNPDENFYFYWLMTVTVCVLYN 65

Query: 61  LWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGH 120
           +WTLIVRQSFPELQ+  + FW+  D  TD   + DI+VQFRTGYLEQGLMVY+S KLA H
Sbjct: 66  MWTLIVRQSFPELQKAASVFWYVGDGFTDVVFICDIMVQFRTGYLEQGLMVYDSKKLASH 125

Query: 121 YVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRV 180
           Y+KSRAF+ D++SLLPLD L   +GVNP+LRFPRF+K+YR+Y+YYY+VESRTVYPNLWRV
Sbjct: 126 YLKSRAFIFDMLSLLPLDFLQLNVGVNPILRFPRFMKIYRIYNYYYMVESRTVYPNLWRV 185

Query: 181 VNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTT 240
           VNL+HILLI AHWFGCFYYLLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTT
Sbjct: 186 VNLIHILLILAHWFGCFYYLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTT 245

Query: 241 IGDLPQPETDVE 252
           IGDLP PET+ E
Sbjct: 246 IGDLPTPETNAE 257

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969731|ref|XP_003436450.1| AGAP003349-PB [Anopheles gambiae str. PEST] gi|333469246|gb|EGK97223.1| AGAP003349-PB [Anopheles gambiae str. PEST]

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/244 (68%), Positives = 196/244 (80%), Gaps = 1/244 (0%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G     +     R R R  K+   TVVNPD N YFYWL+++T  +LYNLWTLIVRQ
Sbjct: 70  VEDTGSEGATDAEKTVRRRRRFAKIPR-TVVNPDENFYFYWLMLVTISILYNLWTLIVRQ 128

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFM 128
           SFPELQ N ++FW  CD  TD   + D+ VQ RTGYLEQGLMVY+S KLAGHY++SRAF+
Sbjct: 129 SFPELQSNASRFWLSCDCFTDIVFIFDVAVQLRTGYLEQGLMVYDSRKLAGHYLRSRAFL 188

Query: 129 LDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILL 188
           LD+ +L+PLD+L F++G  PMLRFPRF KVYR   YYYIVESRTV+PNLWRVVNL+HILL
Sbjct: 189 LDLAALVPLDILQFRLGSQPMLRFPRFFKVYRAVKYYYIVESRTVWPNLWRVVNLIHILL 248

Query: 189 IFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPE 248
           I AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTIGDLP PE
Sbjct: 249 ILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTIGDLPTPE 308

Query: 249 TDVE 252
           T+ E
Sbjct: 309 TNAE 312

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969733|ref|XP_314248.5| AGAP003349-PA [Anopheles gambiae str. PEST] gi|333469245|gb|EAA09666.5| AGAP003349-PA [Anopheles gambiae str. PEST]

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/244 (68%), Positives = 196/244 (80%), Gaps = 1/244 (0%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G     +     R R R  K+   TVVNPD N YFYWL+++T  +LYNLWTLIVRQ
Sbjct: 70  VEDTGSEGATDAEKTVRRRRRFAKIPR-TVVNPDENFYFYWLMLVTISILYNLWTLIVRQ 128

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFM 128
           SFPELQ N ++FW  CD  TD   + D+ VQ RTGYLEQGLMVY+S KLAGHY++SRAF+
Sbjct: 129 SFPELQSNASRFWLSCDCFTDIVFIFDVAVQLRTGYLEQGLMVYDSRKLAGHYLRSRAFL 188

Query: 129 LDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILL 188
           LD+ +L+PLD+L F++G  PMLRFPRF KVYR   YYYIVESRTV+PNLWRVVNL+HILL
Sbjct: 189 LDLAALVPLDILQFRLGSQPMLRFPRFFKVYRAVKYYYIVESRTVWPNLWRVVNLIHILL 248

Query: 189 IFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPE 248
           I AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTIGDLP PE
Sbjct: 249 ILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTIGDLPTPE 308

Query: 249 TDVE 252
           T+ E
Sbjct: 309 TNAE 312

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103345|ref|XP_001647938.1| cyclic-nucleotide-gated cation channel [Aedes aegypti] gi|108884770|gb|EAT48995.1| AAEL000014-PA [Aedes aegypti]

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/244 (67%), Positives = 196/244 (80%), Gaps = 2/244 (0%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G   +G   A +  R RR+     TVVNPD N YFYWL+++T  +LYNLWTLIVRQ
Sbjct: 42  VEDTGS--EGATDADKTARRRRRLKIPKTVVNPDENFYFYWLMVVTIGILYNLWTLIVRQ 99

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFM 128
           SFPELQ N +KFW  CD  TD   +LD++VQ RTGYLEQGLMVY+S KLAGHY+ S  F+
Sbjct: 100 SFPELQTNASKFWLSCDCLTDVVFILDVVVQLRTGYLEQGLMVYDSRKLAGHYLHSSEFL 159

Query: 129 LDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILL 188
           LD+ +L+PLD+L  ++G  P+LRFPRF KVYR   YYYIVESRTV+PNLWRVVNL+HILL
Sbjct: 160 LDLATLVPLDILQIRLGTQPLLRFPRFFKVYRAIKYYYIVESRTVWPNLWRVVNLIHILL 219

Query: 189 IFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPE 248
           I AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTIGDLP PE
Sbjct: 220 ILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTIGDLPTPE 279

Query: 249 TDVE 252
           T+ E
Sbjct: 280 TNAE 283

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050110|ref|XP_001859381.1| cyclic-nucleotide-gated cation channel [Culex quinquefasciatus] gi|167871677|gb|EDS35060.1| cyclic-nucleotide-gated cation channel [Culex quinquefasciatus]

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/244 (67%), Positives = 194/244 (79%), Gaps = 2/244 (0%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G   +G   A +  R RR+     TVVNPD N YFYWL+ +T  +LYNLWTLIVRQ
Sbjct: 51  VEDTGS--EGATDADKTVRRRRRLKIPKTVVNPDENFYFYWLMTVTISILYNLWTLIVRQ 108

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFM 128
           SFPELQEN ++FW  CD  TD   ++D+ VQ RTGYLEQGLMVY+S KLAGHY+ S  F+
Sbjct: 109 SFPELQENASRFWLSCDCLTDFVFIVDVAVQLRTGYLEQGLMVYDSKKLAGHYLHSSEFL 168

Query: 129 LDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILL 188
            D+ SL+PLD+L  ++G  P+LRFPRF KVYR   YYYIVESRTV+PNLWRVVNL+HILL
Sbjct: 169 FDLASLVPLDILQIRLGAQPLLRFPRFFKVYRAIKYYYIVESRTVWPNLWRVVNLIHILL 228

Query: 189 IFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPE 248
           I AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTIGDLP PE
Sbjct: 229 ILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTIGDLPTPE 288

Query: 249 TDVE 252
           T+ E
Sbjct: 289 TNAE 292

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432282|ref|XP_002064152.1| GK20012 [Drosophila willistoni] gi|194160237|gb|EDW75138.1| GK20012 [Drosophila willistoni]

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/251 (66%), Positives = 197/251 (78%), Gaps = 8/251 (3%)

Query: 2   DTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNL 61
           DTG E   GD     D +    RR   ++++    +VVNPD N YFYWL+++T CVLYNL
Sbjct: 95  DTGSESASGDV----DKSVKRSRRRYLQKRR----SVVNPDENFYFYWLMMLTVCVLYNL 146

Query: 62  WTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHY 121
           WTLIVRQSFPELQ++   FW  CD  TD   +LDI+VQ RTGYLEQGLMVY+  KLA HY
Sbjct: 147 WTLIVRQSFPELQQSVPTFWLVCDSITDVVFILDIIVQLRTGYLEQGLMVYDDKKLACHY 206

Query: 122 VKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVV 181
           V SR F+ D+I+L+PLDLL  K+G +P+LRF RF KVYR   +YYIVESRTV+PNLWRVV
Sbjct: 207 VHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFFKVYRSVRFYYIVESRTVWPNLWRVV 266

Query: 182 NLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTI 241
           NL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTI
Sbjct: 267 NLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTI 326

Query: 242 GDLPQPETDVE 252
           GDLP PET+ E
Sbjct: 327 GDLPTPETNAE 337

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616418|ref|NP_001259571.1| CNG channel-like, isoform H [Drosophila melanogaster] gi|440216795|gb|AGB95413.1| CNG channel-like, isoform H [Drosophila melanogaster]

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/216 (72%), Positives = 183/216 (84%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFL 156
           +VQ RTGYLEQGLMVY+  KLA HYV SR F+ D+I+L+PLDLL  K+G +P+LRF RF 
Sbjct: 176 IVQLRTGYLEQGLMVYDDRKLACHYVHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFF 235

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYR 216
           KVYR   +YYIVESRTV+PNLWRVVNL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR
Sbjct: 236 KVYRSVRFYYIVESRTVWPNLWRVVNLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYR 295

Query: 217 VGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
            G+++TLTRKYLGS+YWSTLTLTTIGDLP PET+ E
Sbjct: 296 PGDYATLTRKYLGSLYWSTLTLTTIGDLPTPETNAE 331

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616416|ref|NP_001259570.1| CNG channel-like, isoform G [Drosophila melanogaster] gi|440216794|gb|AGB95412.1| CNG channel-like, isoform G [Drosophila melanogaster]

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/216 (72%), Positives = 183/216 (84%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFL 156
           +VQ RTGYLEQGLMVY+  KLA HYV SR F+ D+I+L+PLDLL  K+G +P+LRF RF 
Sbjct: 176 IVQLRTGYLEQGLMVYDDRKLACHYVHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFF 235

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYR 216
           KVYR   +YYIVESRTV+PNLWRVVNL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR
Sbjct: 236 KVYRSVRFYYIVESRTVWPNLWRVVNLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYR 295

Query: 217 VGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
            G+++TLTRKYLGS+YWSTLTLTTIGDLP PET+ E
Sbjct: 296 PGDYATLTRKYLGSLYWSTLTLTTIGDLPTPETNAE 331

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45549131|ref|NP_511163.3| CNG channel-like, isoform C [Drosophila melanogaster] gi|45446960|gb|AAN09666.2| CNG channel-like, isoform C [Drosophila melanogaster]

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/216 (72%), Positives = 183/216 (84%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFL 156
           +VQ RTGYLEQGLMVY+  KLA HYV SR F+ D+I+L+PLDLL  K+G +P+LRF RF 
Sbjct: 176 IVQLRTGYLEQGLMVYDDRKLACHYVHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFF 235

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYR 216
           KVYR   +YYIVESRTV+PNLWRVVNL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR
Sbjct: 236 KVYRSVRFYYIVESRTVWPNLWRVVNLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYR 295

Query: 217 VGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
            G+++TLTRKYLGS+YWSTLTLTTIGDLP PET+ E
Sbjct: 296 PGDYATLTRKYLGSLYWSTLTLTTIGDLPTPETNAE 331

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45551460|ref|NP_727848.2| CNG channel-like, isoform B [Drosophila melanogaster] gi|45446959|gb|AAF48450.3| CNG channel-like, isoform B [Drosophila melanogaster]

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/216 (72%), Positives = 183/216 (84%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFL 156
           +VQ RTGYLEQGLMVY+  KLA HYV SR F+ D+I+L+PLDLL  K+G +P+LRF RF 
Sbjct: 176 IVQLRTGYLEQGLMVYDDRKLACHYVHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFF 235

Query: 157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYR 216
           KVYR   +YYIVESRTV+PNLWRVVNL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR
Sbjct: 236 KVYRSVRFYYIVESRTVWPNLWRVVNLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYR 295

Query: 217 VGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
            G+++TLTRKYLGS+YWSTLTLTTIGDLP PET+ E
Sbjct: 296 PGDYATLTRKYLGSLYWSTLTLTTIGDLPTPETNAE 331

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0263257	1853	cngl "CNG channel-like" [Droso	0.960	0.130	0.633	1.5e-82
UNIPROTKB|E9PF93	698	CNGA3 "Cyclic nucleotide-gated	0.888	0.320	0.440	1.5e-49
UNIPROTKB|F1NEW7	731	CNGA3 "Uncharacterized protein	0.853	0.294	0.454	2.4e-48
UNIPROTKB|Q90805	735	Q90805 "Cyclic nucleotide-gate	0.853	0.292	0.454	2.6e-48
UNIPROTKB|Q90980	645	Q90980 "Cyclic nucleotide-gate	0.849	0.331	0.456	1.2e-47
UNIPROTKB|Q29441	706	CNGA3 "Cyclic nucleotide-gated	0.892	0.318	0.441	3.6e-47
UNIPROTKB|Q16281	694	CNGA3 "Cyclic nucleotide-gated	0.888	0.322	0.440	1.4e-46
ZFIN|ZDB-GENE-090312-121	718	cnga3b "cyclic nucleotide gate	0.880	0.309	0.435	2.4e-46
MGI|MGI:1341818	631	Cnga3 "cyclic nucleotide gated	0.849	0.339	0.465	3e-46
RGD|621815	683	Cnga1 "cyclic nucleotide gated	0.900	0.332	0.420	4.8e-46

FB|FBgn0263257 cngl "CNG channel-like" [Drosophila melanogaster (taxid:7227)]

 Score = 840 (300.8 bits), Expect = 1.5e-82, P = 1.5e-82
 Identities = 159/251 (63%), Positives = 185/251 (73%)

Query:     2 DTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNL 61
             DTG E   GD  +         RR R  +K+    +VVNPD N YFYWL+++T CVLYNL
Sbjct:    90 DTGSESASGDVDKS------VKRRRRYLQKR---RSVVNPDENFYFYWLMMLTVCVLYNL 140

Query:    62 WTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHY 121
             WTLIVRQSFPELQ++   FW  CD  TD   +LDI+VQ RTGYLEQGLMVY+  KLA HY
Sbjct:   141 WTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDIIVQLRTGYLEQGLMVYDDRKLACHY 200

Query:   122 VKSRAFMXXXXXXXXXXXXYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVV 181
             V SR F+              K+G +P+LRF RF KVYR   +YYIVESRTV+PNLWRVV
Sbjct:   201 VHSRDFIFDMIALIPLDLLQLKMGTHPLLRFTRFFKVYRSVRFYYIVESRTVWPNLWRVV 260

Query:   182 NLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTI 241
             NL+HILLI AHWFGCFY+LLS+AEGF GDWVYPYR G+++TLTRKYLGS+YWSTLTLTTI
Sbjct:   261 NLIHILLILAHWFGCFYFLLSEAEGFQGDWVYPYRPGDYATLTRKYLGSLYWSTLTLTTI 320

Query:   242 GDLPQPETDVE 252
             GDLP PET+ E
Sbjct:   321 GDLPTPETNAE 331

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E9PF93 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
 Identities = 100/227 (44%), Positives = 134/227 (59%)

Query:    29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTT 88
             ++ K   + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ 
Sbjct:   155 KKTKKKDAIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSA 214

Query:    89 DTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN- 147
             D   VLD+LV+ RTG+LEQGLMV ++ +L  HY  +  F             Y K+G N 
Sbjct:   215 DVLYVLDVLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNY 274

Query:   148 PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGF 207
             P +RF R LK  R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF
Sbjct:   275 PEVRFNRLLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKFIGF 334

Query:   208 YGD-WVYP-YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               D WVYP   + E   L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   335 GTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 381

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NEW7 CNGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 506 (183.2 bits), Expect = 2.4e-48, P = 2.4e-48
 Identities = 99/218 (45%), Positives = 135/218 (61%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
             V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct:   198 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 257

Query:    98 VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN-PMLRFPRFL 156
             V+FRTG+LEQGL+V +  KL  HY ++  F             Y K+G+N P LRF R L
Sbjct:   258 VRFRTGFLEQGLLVKDEKKLRDHYTQTVQFKLDVLSLLPTDLAYLKLGLNYPELRFNRLL 317

Query:   157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
             ++ R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF  D WVYP 
Sbjct:   318 RIARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKVIGFGTDSWVYPN 377

Query:   215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               + E+  L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   378 VSIPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 415

GO:0016021 "integral to membrane" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

UNIPROTKB|Q90805 Q90805 "Cyclic nucleotide-gated channel cone photoreceptor subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 506 (183.2 bits), Expect = 2.6e-48, P = 2.6e-48
 Identities = 99/218 (45%), Positives = 135/218 (61%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
             V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct:   202 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 261

Query:    98 VQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN-PMLRFPRFL 156
             V+FRTG+LEQGL+V +  KL  HY ++  F             Y K+G+N P LRF R L
Sbjct:   262 VRFRTGFLEQGLLVKDEKKLRDHYTQTVQFKLDVLSLLPTDLAYLKLGLNYPELRFNRLL 321

Query:   157 KVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP- 214
             ++ R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF  D WVYP 
Sbjct:   322 RIARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKVIGFGTDSWVYPN 381

Query:   215 YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               + E+  L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   382 VSIPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 419

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

UNIPROTKB|Q90980 Q90980 "Cyclic nucleotide-gated channel rod photoreceptor subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 100/219 (45%), Positives = 134/219 (61%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
             +++P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +    WF  DY +D   + D+
Sbjct:   109 IIDPAGNMYYNWLFCITMPVMYN-WTMIIARACFDELQNDYLAVWFIVDYVSDVIYIADM 167

Query:    97 LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN-PMLRFPRF 155
              V+ RTGYLEQGL+V    KL   Y  S  F             YFK+G+N P LR  R 
Sbjct:   168 FVRTRTGYLEQGLLVKEEQKLKEKYKSSLQFKLDFLSIIPTDLLYFKLGLNYPELRINRL 227

Query:   156 LKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP 214
             L+V R+++++   E+RT YPN++R+ NLV  ++I  HW  C YY +S+A GF  D WVYP
Sbjct:   228 LRVARMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSISKAIGFGADTWVYP 287

Query:   215 YRVG-EFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
                  EF+ LTRKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   288 NTSHPEFARLTRKYVYSLYWSTLTLTTIGETPPPVRDSE 326

GO:0005216 "ion channel activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

UNIPROTKB|Q29441 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Bos taurus (taxid:9913)]

 Score = 494 (179.0 bits), Expect = 3.6e-47, P = 3.6e-47
 Identities = 102/231 (44%), Positives = 141/231 (61%)

Query:    26 PRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFC 84
             P+   KK   S V++P SN+Y++WL +I   V YN W L+V R  F ELQ      W   
Sbjct:   168 PKKEEKK-KDSVVMDPSSNMYYHWLTVIAVPVFYN-WCLLVCRACFDELQSEHLMLWLVL 225

Query:    85 DYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKI 144
             DY+ D    +D+LV+ RTG+LEQGLMV ++ +L  HY ++  F             YFK+
Sbjct:   226 DYSADILYGMDMLVRARTGFLEQGLMVMDASRLWKHYTQTLHFKLDVLSLVPTDLAYFKL 285

Query:   145 GVN-PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQ 203
             G+N P LRF R LK+ R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+
Sbjct:   286 GMNYPELRFNRLLKLARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISK 345

Query:   204 AEGFYGD-WVYPYRVG-EFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               GF  D WVYP     E+  L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   346 FIGFGTDSWVYPNVSNPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 396

GO:0046549 "retinal cone cell development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q16281 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 100/227 (44%), Positives = 134/227 (59%)

Query:    29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTT 88
             ++ K   + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ 
Sbjct:   151 KKTKKKDAIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSA 210

Query:    89 DTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN- 147
             D   VLD+LV+ RTG+LEQGLMV ++ +L  HY  +  F             Y K+G N 
Sbjct:   211 DVLYVLDVLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNY 270

Query:   148 PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGF 207
             P +RF R LK  R+++++   E+RT YPN++R+ NLV  +LI  HW  C Y+ +S+  GF
Sbjct:   271 PEVRFNRLLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKFIGF 330

Query:   208 YGD-WVYP-YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
               D WVYP   + E   L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   331 GTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 377

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

GO:0006810 "transport" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0015276 "ligand-gated ion channel activity" evidence=TAS

ZFIN|ZDB-GENE-090312-121 cnga3b "cyclic nucleotide gated channel alpha 3b" [Danio rerio (taxid:7955)]

 Score = 488 (176.8 bits), Expect = 2.4e-46, P = 2.4e-46
 Identities = 98/225 (43%), Positives = 134/225 (59%)

Query:    31 KKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDT 90
             +K  H  +++P ++LY++WL I+   V YNL  L+ R  F ELQ++    W   DYT+D 
Sbjct:   184 EKPKHVWIMDPATDLYYHWLTIVAIPVFYNLMLLVTRACFNELQDDYTILWMVLDYTSDV 243

Query:    91 FIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN-PM 149
                LD  V+ RTG+LEQGL+V  S KL  HY KS  F               K+G N P 
Sbjct:   244 IYYLDTFVRSRTGFLEQGLLVRESKKLWEHYKKSPQFKFDIFSMIPTDILMLKVGYNNPE 303

Query:   150 LRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYG 209
             LRF R  K+ R+++Y+   E+RT +PN++R+ NLV  +LI  HW GC ++ +S+  GF  
Sbjct:   304 LRFNRLFKMARLFEYFDRTETRTNFPNIFRISNLVLYILIIIHWNGCIFFAISKTLGFGS 363

Query:   210 D-WVYP-YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
             D WVYP     EF  L RKY+  +YWSTLTLTTIG+ P P  D+E
Sbjct:   364 DSWVYPNISDPEFGRLGRKYIYCLYWSTLTLTTIGETPPPVRDIE 408

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1341818 Cnga3 "cyclic nucleotide gated channel alpha 3" [Mus musculus (taxid:10090)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 102/219 (46%), Positives = 133/219 (60%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
             VV+P SN+Y+ WL  I   V YN W L+V R  F ELQ      W   DY+ D   VLD+
Sbjct:   101 VVDPSSNIYYRWLTAIALPVFYN-WCLLVCRACFDELQSEHLTLWLVLDYSADVLYVLDM 159

Query:    97 LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYFKIGVN-PMLRFPRF 155
             LV+ RTG+LEQGLMV ++ +L  HY K+  F             Y K+GVN P LRF R 
Sbjct:   160 LVRARTGFLEQGLMVRDTKRLWKHYTKTLHFKLDILSLIPTDLAYLKLGVNYPELRFNRL 219

Query:   156 LKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGD-WVYP 214
             LK  R+++++   E+RT YPN++R+ NLV   LI  HW  C Y+ +S+  GF  D WVYP
Sbjct:   220 LKFSRLFEFFDRTETRTNYPNVFRIGNLVLYTLIIIHWNACIYFAISKFIGFGTDSWVYP 279

Query:   215 YRVG-EFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
                  E++ L+RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   280 NTSKPEYARLSRKYIYSLYWSTLTLTTIGETPPPVKDEE 318

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=ISO;IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IPI

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IPI

GO:0007601 "visual perception" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0030553 "cGMP binding" evidence=ISO

GO:0032026 "response to magnesium ion" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO;IPI

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0046549 "retinal cone cell development" evidence=IMP

GO:0050896 "response to stimulus" evidence=IEA

GO:0051591 "response to cAMP" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

RGD|621815 Cnga1 "cyclic nucleotide gated channel alpha 1" [Rattus norvegicus (taxid:10116)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 98/233 (42%), Positives = 140/233 (60%)

Query:    25 RPRCRRKKVHHSTVV-NPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWF 82
             +P+ ++++     VV +P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +  ++W 
Sbjct:   134 KPKEKKEEEKKEVVVIDPSGNMYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWL 192

Query:    83 FCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMXXXXXXXXXXXXYF 142
               DY +D   + D+ V+ RTGYLEQGL+V + +KL   Y  +  F             YF
Sbjct:   193 IFDYVSDVVYLADMFVRTRTGYLEQGLLVKDELKLIEKYKANLQFKLDVLSVIPTDLLYF 252

Query:   143 KIGVN-PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLL 201
             K G N P +R  R L++ R+++++   E+RT YPN++R+ NLV  ++I  HW  C YY +
Sbjct:   253 KFGWNYPEIRLNRLLRISRMFEFFQRTETRTNYPNIFRISNLVMYIVIIIHWNACVYYSI 312

Query:   202 SQAEGFYGD-WVYP-YRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE 252
             S+A GF  D WVYP     EF  L RKY+ S+YWSTLTLTTIG+ P P  D E
Sbjct:   313 SKAIGFGNDTWVYPDVNDPEFGRLARKYVYSLYWSTLTLTTIGETPPPVLDSE 365

GO:0001750 "photoreceptor outer segment" evidence=ISO

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=TAS

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007283 "spermatogenesis" evidence=IEP

GO:0007601 "visual perception" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0017071 "intracellular cyclic nucleotide activated cation channel complex" evidence=IDA

GO:0030553 "cGMP binding" evidence=IDA

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0043195 "terminal bouton" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

GO:0051480 "cytosolic calcium ion homeostasis" evidence=IDA

GO:0051899 "membrane depolarization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-16
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	3e-09

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           +++P  + Y +W  ++   V Y+ W      +F              D   D F  +DI+
Sbjct: 53  IISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRG--LEIADNVVDLFFAVDIV 110

Query: 98  VQFRTGYLEQ--GLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLL-YFKIG------VNP 148
           + F   Y++    L+V +  K+A  Y+ S  F++D+ S +P   L Y   G         
Sbjct: 111 LTFFVAYIDPRTQLLVRDRKKIAVRYL-STWFLMDVASTIPFQALAYLITGTVKLNLSYS 169

Query: 149 MLRFPRFLKVYRVYDYYYIVESRTVYPNLW-RVVNLVHILLIFAHWFGCFYYLLS----- 202
           +L   RF ++ RV   +  +E    +   W R   L+ + L   H  GC YYL++     
Sbjct: 170 LLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPH 229

Query: 203 QAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG 242
           Q + + G  +  +R    ++L  +Y+ +IYWS  T+TT+G
Sbjct: 230 QGKTWIGAVIPNFRE---TSLWIRYISAIYWSITTMTTVG 266

Length = 823

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 85  DYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKI 144
           DY       L++L++F                    Y +S   +LD + +LP  +     
Sbjct: 3   DYVFTVIFTLEMLLKFIALGF------------KRKYFRSPWNILDFLVVLPSLVSLILF 50

Query: 145 GVNPM---LRFPRFLKVYRVYDYYYIVES-RTVYPNLWR----VVNLVHILLIFAHWFGC 196
            +      LR  R L++ R+          RT+  +L R    ++NL+ +LL+    F  
Sbjct: 51  LLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAI 110

Query: 197 FYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGD 243
               L   E               ++    Y  ++ W   TLTT G 
Sbjct: 111 IGVQLFGGE-LDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGW 156

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498|consensus	727		100.0
KOG0500|consensus	536		100.0
KOG0501|consensus	971		100.0
KOG0499|consensus	815		99.97
KOG3713|consensus	477		99.82
KOG1545|consensus	507		99.74
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.32
KOG4390|consensus	632		99.22
KOG1419|consensus	654		99.16
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	98.84
KOG2302|consensus	1956		97.7
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	97.57
KOG1420|consensus	1103		97.44
PRK10537	393	voltage-gated potassium channel; Provisional	96.33
KOG2301|consensus	1592		96.07
KOG2301|consensus	1592		94.9
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	93.13
KOG2302|consensus	1956		91.0
KOG4404|consensus	350		88.75
KOG3193|consensus	1087		87.66
PLN03223	1634	Polycystin cation channel protein; Provisional	83.28
KOG3614|consensus	1381		83.13

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=4.7e-38  Score=300.50  Aligned_cols=217  Identities=25%  Similarity=0.472  Sum_probs=180.9

Q ss_pred             ccCCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeC--Ce
Q psy16082         32 KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQ--GL  109 (252)
Q Consensus        32 ~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~--g~  109 (252)
                      .+.++++|+|++++++.||.+++++.+|+++++|+.++|...  .....+.++|.+++++|++|++++|+|+|+++  +.
T Consensus        47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~--~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~  124 (823)
T PLN03192         47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA--SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQL  124 (823)
T ss_pred             cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC--CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcE
Confidence            357789999999999999999999999999999999999432  23345778999999999999999999999986  57


Q ss_pred             EeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhCC-------cchhHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHH
Q psy16082        110 MVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGV-------NPMLRFPRFLKVYRVYDYYYIVESRTVY-PNLWRVV  181 (252)
Q Consensus       110 ~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~-------~~~l~~lrllr~~rl~~~~~~~~~~~~~-~~~~~l~  181 (252)
                      +|.|+++|+++|+|+ ||++|+++++|+.++......       ..+++++|++|+.|+.+++.++++.... ...++++
T Consensus       125 lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~  203 (823)
T PLN03192        125 LVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCA  203 (823)
T ss_pred             EEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999998 899999999999876544321       1356777888888888888877765433 3456899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC-CCCCcccc-CCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCCC
Q psy16082        182 NLVHILLIFAHWFGCFYYLLSQAEG-FYGDWVYP-YRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDVE  252 (252)
Q Consensus       182 ~l~~~~l~~~H~~aC~~~~i~~~~~-~~~~W~~~-~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~E  252 (252)
                      ++++.+++++||+||+||+++.... .+.+|+.. .......+++.+|+.|+|||++||||||  |+ +|.|+.|
T Consensus       204 kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi-~p~t~~E  277 (823)
T PLN03192        204 RLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDL-HAVNTIE  277 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCc-CCCccch
Confidence            9999999999999999999997543 34589875 2233447899999999999999999998  77 9999887

>KOG0498|consensus

Probab=100.00  E-value=2.5e-37  Score=282.85  Aligned_cols=219  Identities=26%  Similarity=0.432  Sum_probs=178.2

Q ss_pred             cCCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccc-------cCCccchhhhHHHHHHHHHHHhHhcceeEe
Q psy16082         33 VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE-------NGAKFWFFCDYTTDTFIVLDILVQFRTGYL  105 (252)
Q Consensus        33 ~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~-------~~~~~~~~~~~~~~~if~~Di~l~f~t~~~  105 (252)
                      +...++++|+|++++.||.++++++++++++.|+.++|+..++       .....+.++|.++|++|++||+++|+|+|+
T Consensus        64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv  143 (727)
T KOG0498|consen   64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV  143 (727)
T ss_pred             cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence            4556699999999999999999999999999999999975432       145778899999999999999999999999


Q ss_pred             eC-C-eEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhC---------C---cchhHHHHHHHHHHHHHHHHHHHhh
Q psy16082        106 EQ-G-LMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIG---------V---NPMLRFPRFLKVYRVYDYYYIVESR  171 (252)
Q Consensus       106 ~~-g-~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~---------~---~~~l~~lrllr~~rl~~~~~~~~~~  171 (252)
                      ++ + ++|.||++|+.+|+|+ ||++|++|++|++++.....         .   ..++.+.|+.|+.|+.++++++++.
T Consensus       144 ~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~  222 (727)
T KOG0498|consen  144 DPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD  222 (727)
T ss_pred             CCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86 4 5999999999999998 89999999999998876533         1   1356777888888888888888764


Q ss_pred             hh--h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-C-CccccC------CC----CCCCchHHHHHHHHHHH
Q psy16082        172 TV--Y-PNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGF--Y-G-DWVYPY------RV----GEFSTLTRKYLGSIYWS  234 (252)
Q Consensus       172 ~~--~-~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~--~-~-~W~~~~------~~----~~~~~~~~~Y~~slywa  234 (252)
                      ..  . ..+.-+.+++..+++++||.||+||+++.....  . . +|+...      ..    -...+++.+|++|+||+
T Consensus       223 ~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~  302 (727)
T KOG0498|consen  223 TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWG  302 (727)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHH
Confidence            32  2 223337799999999999999999999987652  2 2 787742      22    11256788999999999


Q ss_pred             HHHhhhcC-CCCCCCCCCC
Q psy16082        235 TLTLTTIG-DLPQPETDVE  252 (252)
Q Consensus       235 i~tlttvG-d~~~P~t~~E  252 (252)
                      +++|||+| +..+|+|+.|
T Consensus       303 l~tLstvG~g~~~s~~~~E  321 (727)
T KOG0498|consen  303 LSTLSTVGYGLVHANNMGE  321 (727)
T ss_pred             hhHhhhccCCccCCCCcHH
Confidence            99999999 5558888766

>KOG0500|consensus

Probab=100.00  E-value=5.1e-35  Score=251.20  Aligned_cols=198  Identities=52%  Similarity=0.911  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHh
Q psy16082         55 CCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISL  134 (252)
Q Consensus        55 ~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~  134 (252)
                      +.++|++++++...+|++.+......|..+|+++|++|++|++++.+|+|+++|..|.|..+.++||..+..|.+|++|+
T Consensus         5 ~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~l   84 (536)
T KOG0500|consen    5 LGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSL   84 (536)
T ss_pred             EehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhh
Confidence            45789999999988998877777888999999999999999999999999999999999999999999998899999999


Q ss_pred             hhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cccc
Q psy16082        135 LPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYG-DWVY  213 (252)
Q Consensus       135 lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~-~W~~  213 (252)
                      +|+.++....+.....|+.|++|+.|+..++++.+.++.++.++|+++++.+.+++.||.||++|+++..++.+. +|+.
T Consensus        85 iP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY  164 (536)
T KOG0500|consen   85 IPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVY  164 (536)
T ss_pred             cchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCcccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988864 6987


Q ss_pred             cC-CCCCCCc-----hHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy16082        214 PY-RVGEFST-----LTRKYLGSIYWSTLTLTTIGDLPQPETDVE  252 (252)
Q Consensus       214 ~~-~~~~~~~-----~~~~Y~~slywai~tlttvGd~~~P~t~~E  252 (252)
                      +. ...+.++     ...+|+.|+||+.-||||+|+-++|.|+.|
T Consensus       165 ~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~e  209 (536)
T KOG0500|consen  165 PKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSE  209 (536)
T ss_pred             CCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCCCcCch
Confidence            53 2334455     899999999999999999998889999987

>KOG0501|consensus

Probab=100.00  E-value=2.5e-34  Score=250.85  Aligned_cols=214  Identities=23%  Similarity=0.383  Sum_probs=169.6

Q ss_pred             cCCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeC-CeEe
Q psy16082         33 VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQ-GLMV  111 (252)
Q Consensus        33 ~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~-g~~i  111 (252)
                      |-++++|-.++.|+..||++++++.+|..+++||.++|...+ .....|..+|-++|++|++||++||+|.++-. |++|
T Consensus       204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~-~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVv  282 (971)
T KOG0501|consen  204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQ-RNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVV  282 (971)
T ss_pred             CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccc-cCceeEEEecchhhhhhhhhhhhhcceeeecCCCcee
Confidence            456788888999999999999999999999999999996533 34567889999999999999999999999987 8999


Q ss_pred             eeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhCCc----c---hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy16082        112 YNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN----P---MLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLV  184 (252)
Q Consensus       112 ~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~----~---~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~  184 (252)
                      .||+.|+.||+|+ ||++|+++++|+..+...-+..    +   .+++.|++|+-|+.|.++   .+.-+. ..-++.++
T Consensus       283 sdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD---~YlEYG-AA~LvLLl  357 (971)
T KOG0501|consen  283 SDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLD---HYLEYG-AAVLVLLL  357 (971)
T ss_pred             cChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-HHHHHHHH
Confidence            9999999999999 8999999999999877764432    3   445555555555555443   332222 23567778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC--------CCCccccCCC---------C-------CCCchHHHHHHHHHHHHHHhhh
Q psy16082        185 HILLIFAHWFGCFYYLLSQAEGF--------YGDWVYPYRV---------G-------EFSTLTRKYLGSIYWSTLTLTT  240 (252)
Q Consensus       185 ~~~l~~~H~~aC~~~~i~~~~~~--------~~~W~~~~~~---------~-------~~~~~~~~Y~~slywai~tltt  240 (252)
                      +.+.+++||.||+||.+|.++..        .++|+-...+         .       ...+.-+-|+.|+|+.++.|||
T Consensus       358 C~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mtt  437 (971)
T KOG0501|consen  358 CVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTT  437 (971)
T ss_pred             HHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhc
Confidence            88899999999999999987632        2478742211         0       1134456799999999999999


Q ss_pred             cC-CCCCCCCCCC
Q psy16082        241 IG-DLPQPETDVE  252 (252)
Q Consensus       241 vG-d~~~P~t~~E  252 (252)
                      || ++++|+|+.|
T Consensus       438 vGFGNiA~~TD~E  450 (971)
T KOG0501|consen  438 VGFGNIAPNTDNE  450 (971)
T ss_pred             ccccccCCCccHH
Confidence            99 6669999976

>KOG0499|consensus

Probab=99.97  E-value=5.1e-30  Score=224.21  Aligned_cols=210  Identities=35%  Similarity=0.667  Sum_probs=192.6

Q ss_pred             CeeEcCCC-hhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhH-hcceeEeeCCeEeee
Q psy16082         36 STVVNPDS-NLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILV-QFRTGYLEQGLMVYN  113 (252)
Q Consensus        36 ~~ii~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l-~f~t~~~~~g~~i~~  113 (252)
                      ...|||+. +++..|-.+..++..++++++|+..+|+.+...+...|++.|++||+++++|+.+ +=+.-|...|.+|.|
T Consensus       217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~  296 (815)
T KOG0499|consen  217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKD  296 (815)
T ss_pred             CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEe
Confidence            44789998 9999999999999999999999999999877778889999999999999999985 667788889999999


Q ss_pred             HHHHHHHHhcccchHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy16082        114 SMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHW  193 (252)
Q Consensus       114 ~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~H~  193 (252)
                      .+..++||+++..|-+|++|++|+.+++..++...++|+.|++|+-..+.++..+++.....++.|+.+...++++++|+
T Consensus       297 kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHi  376 (815)
T KOG0499|consen  297 KNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHI  376 (815)
T ss_pred             chHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhh
Confidence            99999999999889999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCC-CccccCCCCCCCchHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy16082        194 FGCFYYLLSQAEGFYG-DWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIGDLPQPETDVE  252 (252)
Q Consensus       194 ~aC~~~~i~~~~~~~~-~W~~~~~~~~~~~~~~~Y~~slywai~tlttvGd~~~P~t~~E  252 (252)
                      .||++|..+.+++.+. .|+...+       ...|++|+|||+-|+||+|+.+.|.|-.|
T Consensus       377 nacvYY~~SayqglG~~rWVydg~-------Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E  429 (815)
T KOG0499|consen  377 NACVYYWASAYQGLGTTRWVYDGE-------GNEYIRCYYFAVKTLITIGGLPEPQTLFE  429 (815)
T ss_pred             hHHHHHHHHhhcccccceeEEcCC-------CCceeeehhhHHHHHHHhcCCCCcchHHH
Confidence            9999999999998875 5987544       23699999999999999998888987543

>KOG3713|consensus

Probab=99.82  E-value=9.6e-20  Score=158.27  Aligned_cols=194  Identities=19%  Similarity=0.294  Sum_probs=138.0

Q ss_pred             ccccCCCeeEcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----------------CCccchhhhHHHHHH
Q psy16082         30 RKKVHHSTVVNPD-SNLYFYWLLIITCCVLYNLWTLIVRQSFPELQEN-----------------GAKFWFFCDYTTDTF   91 (252)
Q Consensus        30 ~~~~~~~~ii~P~-s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~-----------------~~~~~~~~~~~~~~i   91 (252)
                      .+++.+..+-+|+ |...++...+.+++.+.+.+.+.+. +.++++..                 ....+..+|.+|.++
T Consensus       174 ~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~-T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~W  252 (477)
T KOG3713|consen  174 LRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLG-TLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAW  252 (477)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHH
Confidence            5566777788998 4557777777766666666655554 44433211                 223466899999999


Q ss_pred             HHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhh--hCC------c---chhHHHHHHHHHH
Q psy16082         92 IVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFK--IGV------N---PMLRFPRFLKVYR  160 (252)
Q Consensus        92 f~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~--~~~------~---~~l~~lrllr~~r  160 (252)
                      |.+++++||..+            .-+.+++|++-.++|++|++|+++-...  .+.      .   ..+|++|++|++|
T Consensus       253 FT~E~llR~~~~------------P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~R  320 (477)
T KOG3713|consen  253 FTFEYLLRFLVA------------PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILR  320 (477)
T ss_pred             HHHHHHHHHHcC------------chHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHH
Confidence            999999999987            6667899998899999999999864333  221      0   2455556665555


Q ss_pred             HHHHHHH---HHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHH
Q psy16082        161 VYDYYYI---VES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWST  235 (252)
Q Consensus       161 l~~~~~~---~~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai  235 (252)
                      ++|+-.+   ++.  .+..+..-.+..+++++.+.+-++|-+-|++...++..              .+.....|+|||+
T Consensus       321 I~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~--------------~FtSIPa~~WWai  386 (477)
T KOG3713|consen  321 IFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT--------------KFTSIPAGFWWAV  386 (477)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--------------CCccccchhheee
Confidence            5555443   332  34555666788888888999999999999998743221              1444555999999


Q ss_pred             HHhhhcC--CCCCCCCCC
Q psy16082        236 LTLTTIG--DLPQPETDV  251 (252)
Q Consensus       236 ~tlttvG--d~~~P~t~~  251 (252)
                      +||||||  |+ +|.|..
T Consensus       387 VTMTTVGYGDm-~P~T~~  403 (477)
T KOG3713|consen  387 VTMTTVGYGDM-VPVTVL  403 (477)
T ss_pred             EEEeeecccCc-cccccc
Confidence            9999999  76 999964

>KOG1545|consensus

Probab=99.74  E-value=3.2e-19  Score=148.80  Aligned_cols=198  Identities=17%  Similarity=0.302  Sum_probs=130.7

Q ss_pred             cccccccccCCCeeEcCCChh-HHHHHHHHHHHHHHHHHHHHHhhccccccc----------------------------
Q psy16082         25 RPRCRRKKVHHSTVVNPDSNL-YFYWLLIITCCVLYNLWTLIVRQSFPELQE----------------------------   75 (252)
Q Consensus        25 ~~~~~~~~~~~~~ii~P~s~~-~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~----------------------------   75 (252)
                      -|+...+++.+--.-.|+|+- .+.-.++.+++++.+.++..+. +.+.+.+                            
T Consensus       168 lP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClE-TlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~  246 (507)
T KOG1545|consen  168 LPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLE-TLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDL  246 (507)
T ss_pred             CCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHH-hCchhhhhccccccccccCCCcccCCCCCcccccc
Confidence            444566777777778898764 4444555555555554444433 3332111                            


Q ss_pred             ---cCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhh--C---C-
Q psy16082         76 ---NGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKI--G---V-  146 (252)
Q Consensus        76 ---~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~--~---~-  146 (252)
                         ....+++++|.+|.++|..+.+++|..+            ..+..+.|+-..++|++|++|+..-+..-  .   . 
T Consensus       247 ~~~~f~dPFFiVEt~CIiWFtfEllvRf~aC------------PsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g  314 (507)
T KOG1545|consen  247 GDTKFTDPFFIVETLCIIWFTFELLVRFFAC------------PSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGG  314 (507)
T ss_pred             cccccCCchHhHHHHHHHHHhHHHHHHHhcC------------ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC
Confidence               1356788999999999999999999988            44456677667899999999987643321  0   0 


Q ss_pred             --------cchhHHHHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy16082        147 --------NPMLRFPRFLKVYRVYDYYYIVES-----RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVY  213 (252)
Q Consensus       147 --------~~~l~~lrllr~~rl~~~~~~~~~-----~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~  213 (252)
                              ..+||++||+|++|++|+..+-+.     ++....+..+..|+++++..+-+++..-|+...          
T Consensus       315 ~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa----------  384 (507)
T KOG1545|consen  315 GQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA----------  384 (507)
T ss_pred             ccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec----------
Confidence                    126788888888888777654332     345556667777777777666666665444433          


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        214 PYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       214 ~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                          ++..+.+.....|+|||++||||||  |. .|.|.
T Consensus       385 ----de~~S~F~SIPdaFWwavVTMTTVGYGDm-~P~Tv  418 (507)
T KOG1545|consen  385 ----DEPESHFSSIPDAFWWAVVTMTTVGYGDM-VPVTV  418 (507)
T ss_pred             ----CCCccCCCcCcccceEEEEEEEeeccccc-eeccc
Confidence                1223344555569999999999999  66 88874

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.32  E-value=4e-12  Score=101.29  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhCCc-----chhHHHHHHHH
Q psy16082         84 CDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGVN-----PMLRFPRFLKV  158 (252)
Q Consensus        84 ~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~-----~~l~~lrllr~  158 (252)
                      +|.+++++|.+|+++++.+....           +++|++++|.++|+++++|...........     ..+++.|++|.
T Consensus         2 ~~~~~~~~f~~e~~l~~~~~~~~-----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (200)
T PF00520_consen    2 LEIIFDVIFILEIVLRFFALGFK-----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRL   70 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCG------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhccH-----------HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecc
Confidence            68999999999999999976322           678999988999999999995433332211     23444444444


Q ss_pred             HHHHHHHHHH---Hh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cc-cccCCCCCCCchHHHHHHHH
Q psy16082        159 YRVYDYYYIV---ES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYG-DW-VYPYRVGEFSTLTRKYLGSI  231 (252)
Q Consensus       159 ~rl~~~~~~~---~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~-~W-~~~~~~~~~~~~~~~Y~~sl  231 (252)
                      .|+.+..+..   +.  ....+...++.+.+..+.++.|.+||+++.+.......+ .+ ....+.....+.++.|..|+
T Consensus        71 ~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~  150 (200)
T PF00520_consen   71 LRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESL  150 (200)
T ss_dssp             HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccc
Confidence            4444444332   22  123355557888999999999999999998887643221 11 01111223345677899999


Q ss_pred             HHHHHHhhhcC
Q psy16082        232 YWSTLTLTTIG  242 (252)
Q Consensus       232 ywai~tlttvG  242 (252)
                      ||++.++|+.|
T Consensus       151 ~~~~~~~t~~~  161 (200)
T PF00520_consen  151 YWLFQTMTGEG  161 (200)
T ss_dssp             HHHHHHHTTTT
T ss_pred             cccccccccCC
Confidence            99999999998

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG4390|consensus

Probab=99.22  E-value=1.8e-13  Score=115.83  Aligned_cols=196  Identities=14%  Similarity=0.197  Sum_probs=120.7

Q ss_pred             ccccccCCCeeEcCCChh-HHHHHHHHHHHHHHHHH-----HHHHhhccccc-----cccCCccchhhhHHHHHHHHHHH
Q psy16082         28 CRRKKVHHSTVVNPDSNL-YFYWLLIITCCVLYNLW-----TLIVRQSFPEL-----QENGAKFWFFCDYTTDTFIVLDI   96 (252)
Q Consensus        28 ~~~~~~~~~~ii~P~s~~-~~~w~~~~~~~~~~~~~-----~~p~~~~f~~~-----~~~~~~~~~~~~~~~~~if~~Di   96 (252)
                      ...+++.++-.-+|+.+- ..++-.+.-+++.++.+     ++|..-.-...     .+.....++.+|..|.++|..++
T Consensus       165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY  244 (632)
T KOG4390|consen  165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY  244 (632)
T ss_pred             chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence            345667777788887553 33333333222222222     23332111100     11234567789999999999999


Q ss_pred             hHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhCC---cchhHHHHHHHHHHHHHHHHHHHhhhh
Q psy16082         97 LVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGV---NPMLRFPRFLKVYRVYDYYYIVESRTV  173 (252)
Q Consensus        97 ~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~---~~~l~~lrllr~~rl~~~~~~~~~~~~  173 (252)
                      ++++..+            ..+.+++++-.-++|+++++|+++-+.....   +..+-.+|++|++|++++-.+-+...+
T Consensus       245 lLRL~aA------------PsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRI  312 (632)
T KOG4390|consen  245 LLRLFAA------------PSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRI  312 (632)
T ss_pred             HHHHHcC------------chHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccch
Confidence            9999987            6667889988889999999999764433322   345555666666666666554444322


Q ss_pred             -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCC
Q psy16082        174 -----YPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQ  246 (252)
Q Consensus       174 -----~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~  246 (252)
                           .+..-.+--+++.+-+.+-++|-+.|+...              +.+++.+.....++|+.++||||.|  |. .
T Consensus       313 LGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK--------------g~~at~FTsIPaaFWYTIVTmTTLGYGDM-V  377 (632)
T KOG4390|consen  313 LGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK--------------GSSATKFTSIPAAFWYTIVTMTTLGYGDM-V  377 (632)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc--------------cccccccccCcHhHhhheeeeeecccccc-c
Confidence                 223333333444444455556666666543              2335566677779999999999999  66 8


Q ss_pred             CCCC
Q psy16082        247 PETD  250 (252)
Q Consensus       247 P~t~  250 (252)
                      |+|.
T Consensus       378 p~TI  381 (632)
T KOG4390|consen  378 PSTI  381 (632)
T ss_pred             hHHH
Confidence            8774

>KOG1419|consensus

Probab=99.16  E-value=8e-11  Score=103.83  Aligned_cols=195  Identities=18%  Similarity=0.280  Sum_probs=115.1

Q ss_pred             CCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeE----ee--C
Q psy16082         34 HHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGY----LE--Q  107 (252)
Q Consensus        34 ~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~----~~--~  107 (252)
                      ....+-.|..=-...+..++ +++++.+.++....++++++.......+++|++..++|.++++++...+=    |.  .
T Consensus        81 vYN~LERPrGWkaf~YH~~V-FllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~  159 (654)
T KOG1419|consen   81 VYNFLERPRGWKAFLYHFFV-FLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWY  159 (654)
T ss_pred             HHHHHhCCCcchHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccce
Confidence            33444455543355555555 55666666777777777766666777889999999999999999987652    11  2


Q ss_pred             CeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhCC------cchhHHHHHHHHHHHHHHH---HHHHh--hhhhhh
Q psy16082        108 GLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIGV------NPMLRFPRFLKVYRVYDYY---YIVES--RTVYPN  176 (252)
Q Consensus       108 g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~------~~~l~~lrllr~~rl~~~~---~~~~~--~~~~~~  176 (252)
                      |.+         +|.+++..++|++.++.-...+ ..+.      .+.+|-+|+++++|+++.-   ..++.  ..+...
T Consensus       160 GRL---------rFarkp~cvIDiivi~Asi~vl-~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH  229 (654)
T KOG1419|consen  160 GRL---------RFARKPFCVIDIIVIIASIAVL-AAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAH  229 (654)
T ss_pred             eeE---------EeecCCceEEEEeeeeeeeeEE-EecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhh
Confidence            333         5777877888988665542211 1221      1345555555555554442   22221  111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        177 LWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       177 ~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      -..+ ....++-++.-+++....|++.-...+         .+..+.+.-|-+|+||++.|+||+|  |. +|+|-
T Consensus       230 ~~EL-iTt~YIGFL~LIfsSflVYLaEKd~~~---------e~~n~~F~TyADALWWG~ITltTIGYGDk-~P~TW  294 (654)
T KOG1419|consen  230 SKEL-ITTWYIGFLVLIFSSFLVYLAEKDAQG---------EGTNDEFPTYADALWWGVITLTTIGYGDK-TPQTW  294 (654)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhhccccc---------ccccccchhHHHHHHhhheeEEeeccCCc-Ccccc
Confidence            1122 222344455555666666665532221         1113346778889999999999999  77 99984

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=98.84  E-value=3.4e-09  Score=70.90  Aligned_cols=44  Identities=34%  Similarity=0.581  Sum_probs=40.1

Q ss_pred             cccccCCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy16082         29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPE   72 (252)
Q Consensus        29 ~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~   72 (252)
                      +|+++.+.++|||+|++|.+||++++++.+++++++|+.++|..
T Consensus        29 ~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~   72 (77)
T PF08412_consen   29 ERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFS   72 (77)
T ss_pred             HHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEec
Confidence            45667788999999999999999999999999999999999954

>KOG2302|consensus

Probab=97.70  E-value=0.00021  Score=67.98  Aligned_cols=88  Identities=11%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCeeEcCCChhHHH---------HHHHHHHHHHHHHHHHHHhhccccccccCCccchhhh-HHHHHHHHHHHhHhcce-
Q psy16082         34 HHSTVVNPDSNLYFY---------WLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCD-YTTDTFIVLDILVQFRT-  102 (252)
Q Consensus        34 ~~~~ii~P~s~~~~~---------w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~-~~~~~if~~Di~l~f~t-  102 (252)
                      +-.+++.|+++||..         .|.+++++++.+++++..+ .+.....+.-..+..++ ++..++|++++.++-.. 
T Consensus      1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale-rp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVAL 1180 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE-RPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVAL 1180 (1956)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc-ccccccCcceEEEEEecchHHHHHHHHHHHHHHHhh
Confidence            346789999999864         5566677777787777765 34322222222333444 88999999999986432 


Q ss_pred             eEeeCCeEeeeHHHHHHHHhcccchHhHHH
Q psy16082        103 GYLEQGLMVYNSMKLAGHYVKSRAFMLDII  132 (252)
Q Consensus       103 ~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dli  132 (252)
                      |.+          .--..|+++.|..+|.+
T Consensus      1181 Gl~----------fge~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1181 GLY----------FGEQAYLRSSWNVLDGF 1200 (1956)
T ss_pred             hhc----------cchHHHHHHHHHhhhHH
Confidence            111          11146888888888854

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=97.57  E-value=0.00023  Score=48.21  Aligned_cols=46  Identities=33%  Similarity=0.794  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        187 LLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       187 ~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      +++..+..|++++....  .           .+    ...|.+|+||+++++||+|  |. .|+|+
T Consensus         2 ~~~~~l~~~~~~~~~~~--~-----------~~----~~~~~da~yfs~~t~tTvGyGDi-~p~t~   49 (79)
T PF07885_consen    2 ILLLVLAFGAIFFYISE--G-----------SE----KWSFIDALYFSFVTITTVGYGDI-VPQTP   49 (79)
T ss_dssp             HHHHHHHHHHHHHHHTT--S-----------SS----TTSHHHHHHHHHHHHTT---SSS-STSSH
T ss_pred             EEEeeeHHHHHHHHHHH--h-----------cc----cCCHHHHHHHHHHHHhcccCCCc-cCCcc
Confidence            45667778888888711  0           01    1235569999999999999  77 99875

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1420|consensus

Probab=97.44  E-value=8.5e-06  Score=73.12  Aligned_cols=184  Identities=17%  Similarity=0.240  Sum_probs=94.1

Q ss_pred             CCCeeEcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccc-----hhhhHHHHHHHHHHHhHhcceeEeeCC
Q psy16082         34 HHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFW-----FFCDYTTDTFIVLDILVQFRTGYLEQG  108 (252)
Q Consensus        34 ~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~-----~~~~~~~~~if~~Di~l~f~t~~~~~g  108 (252)
                      +-.-+|..++-..++--.+..++.+-.+++..+..+++.  .+....|     ..+|+...++|++=.+++|..+-    
T Consensus       114 wagelisgqtltgr~lvvlvfilsigsliiyf~das~~~--ve~cq~w~~~~tqqidlafnifflvyffirfiaas----  187 (1103)
T KOG1420|consen  114 WAGELISGQTLTGRVLVVLVFILSIGSLIIYFIDASNPI--VETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAAS----  187 (1103)
T ss_pred             hhcceeecccccceeeehhHHHHhhhceEEEEEcCCChH--HHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhcc----
Confidence            344466666666555444444444444444444444432  2222333     46899999999999999998661    


Q ss_pred             eEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhC-----C-c---chhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy16082        109 LMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIG-----V-N---PMLRFPRFLKVYRVYDYYYIVESRTVYPNLWR  179 (252)
Q Consensus       109 ~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~-----~-~---~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~  179 (252)
                          |          +-||++.+-+.+-+.-+...+.     . .   +++|.+|+..+..+.++.+.++.    ..-+|
T Consensus       188 ----d----------klwf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmtvpdilqylnilkt----sssir  249 (1103)
T KOG1420|consen  188 ----D----------KLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMTVPDILQYLNILKT----SSSIR  249 (1103)
T ss_pred             ----c----------ceeeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhccHHHHHHHHHHHhc----cchhh
Confidence                1          1255555555544433222211     1 1   23333344444444555444332    23345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        180 VVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       180 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      +.+++-.++-+.--.|.+-+++.   +.++.|-...+ ..    --.|-.|.|+.++||+|||  |+ +-.|.
T Consensus       250 l~qlvsifisvwltaag~ihlle---nsgdp~~~f~n-~h----rltyw~cvyfl~vtmstvgygdv-yc~t~  313 (1103)
T KOG1420|consen  250 LVQLVSIFISVWLTAAGFIHLLE---NSGDPWENFQN-NH----RLTYWECVYFLMVTMSTVGYGDV-YCKTT  313 (1103)
T ss_pred             HHHHHHHHHHHHHhhcceeehhh---cCCChhHhccC-cc----cchhhheeeeeEEEeeeccccce-eehhh
Confidence            66655443333333333333333   23334422111 11    2235569999999999999  65 76664

>PRK10537 voltage-gated potassium channel; Provisional

Probab=96.33  E-value=0.027  Score=50.05  Aligned_cols=23  Identities=30%  Similarity=0.704  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      +..|+||+++|+||+|  |+ .|.|.
T Consensus       169 ~~dA~y~svvt~tTvGyGdi-~p~t~  193 (393)
T PRK10537        169 LSTAFYFSIVTMSTVGYGDI-VPVSE  193 (393)
T ss_pred             HHHHHHhhheeeecccCCCC-CCCCH
Confidence            4459999999999999  77 88875

>KOG2301|consensus

Probab=96.07  E-value=0.12  Score=53.22  Aligned_cols=108  Identities=12%  Similarity=0.142  Sum_probs=67.9

Q ss_pred             CCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhh-hCCcchhHHHHH
Q psy16082         77 GAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFK-IGVNPMLRFPRF  155 (252)
Q Consensus        77 ~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~-~~~~~~l~~lrl  155 (252)
                      ........|.+...+|+++++++...-          . .  ..|.++.|.+.|++.+.-...-... .......|.+|.
T Consensus       870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia~----------G-f--~~y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~  936 (1592)
T KOG2301|consen  870 INGILEYADYIFTYIFTFEMLLKWIAY----------G-F--FFYFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRI  936 (1592)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh----------H-H--HHHHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHH
Confidence            345556899999999999999987641          1 1  1299999999999877654332222 222346677777


Q ss_pred             HHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16082        156 LKVYRVYDYYYIVESR-TVYPNLWRVVNLVHILLIFAHWFGCF  197 (252)
Q Consensus       156 lr~~rl~~~~~~~~~~-~~~~~~~~l~~l~~~~l~~~H~~aC~  197 (252)
                      +|..|-+|..++.+.. .+....+.-++.++..+++.+++=++
T Consensus       937 lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fi  979 (1592)
T KOG2301|consen  937 LRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFI  979 (1592)
T ss_pred             HHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776653 23344445555555444444443333

>KOG2301|consensus

Probab=94.90  E-value=0.12  Score=53.34  Aligned_cols=74  Identities=8%  Similarity=0.084  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082         48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF  127 (252)
Q Consensus        48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f  127 (252)
                      .++..++..++.+.+.+...  +.............+..+..++|.++.+++..-             .-.+.|.+.+|.
T Consensus      1158 ~F~~~i~~li~ln~i~l~~~--~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA-------------~~~~~yf~~~WN 1222 (1592)
T KOG2301|consen 1158 AFDYLIMLLIFLNTIIMMVE--TYDQSDTYTAILTILNAVFIVLFTIECILKVIA-------------LRFRGYFTSAWN 1222 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHhccccch
Confidence            46666777777776655544  322222233345578889999999999997652             223679999999


Q ss_pred             HhHHHHhhh
Q psy16082        128 MLDIISLLP  136 (252)
Q Consensus       128 ~~Dlis~lP  136 (252)
                      .+|++-++-
T Consensus      1223 ~FDfvvvIl 1231 (1592)
T KOG2301|consen 1223 VFDFVVTIL 1231 (1592)
T ss_pred             heEeeeeeH
Confidence            999876654

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=93.13  E-value=0.36  Score=41.99  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC--C----CCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC
Q psy16082        182 NLVHILLIFAHWFGCFYYLLSQAEGF--Y----GDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG  242 (252)
Q Consensus       182 ~l~~~~l~~~H~~aC~~~~i~~~~~~--~----~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG  242 (252)
                      -++..+++..-.+|++||.++...+.  .    .+|-. .. .+    ...+..++++++.|+||+|
T Consensus        40 ~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-Cv-~~----~~~f~~aF~FSveT~tTIG  100 (336)
T PF01007_consen   40 LFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-CV-SN----VNSFTSAFLFSVETQTTIG  100 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-SE-CT-----TTHHHHHHHHHHHHTT--
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-ce-ec----ccchhhheeEEEEEEEEec
Confidence            34456667777899999999875321  1    01100 00 11    2346669999999999999

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG2302|consensus

Probab=91.00  E-value=1.1  Score=43.98  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             cCCCeeEcCCChhHH---------HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhccee
Q psy16082         33 VHHSTVVNPDSNLYF---------YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTG  103 (252)
Q Consensus        33 ~~~~~ii~P~s~~~~---------~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~  103 (252)
                      ..+++...-++.+++         +-+.++.++...+.++...+- +.. ........-..++...++|+.+.++++...
T Consensus      1418 Aq~kpyyseyt~~rrlIh~~ctShyld~fit~ii~LnvVtms~eh-yqq-p~sldealkycny~ft~vfV~EaV~klvaf 1495 (1956)
T KOG2302|consen 1418 AQRKPYYSEYTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEH-YQQ-PTSLDEALKYCNYRFTAVFVLEAVLKLVAF 1495 (1956)
T ss_pred             ccCCcccccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HhC-cccHHHHhhhcceeeeehhHHHHHHHHHHH
Confidence            344555556677665         346667777777777666542 221 111223334566778888999998876542


Q ss_pred             EeeCCeEeeeHHHHHHHHhcccchHhHHHHhh----hHHHHHhhh----C-CcchhHHHHHHHHHHHHHHHHHH
Q psy16082        104 YLEQGLMVYNSMKLAGHYVKSRAFMLDIISLL----PLDLLYFKI----G-VNPMLRFPRFLKVYRVYDYYYIV  168 (252)
Q Consensus       104 ~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~l----P~~~~~~~~----~-~~~~l~~lrllr~~rl~~~~~~~  168 (252)
                                   -..++.|.-|.-+|+.-++    -+.+--...    + ...++|+.|++|+-|++|..+.-
T Consensus      1496 -------------G~rrFfkdrwnqldlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkma 1556 (1956)
T KOG2302|consen 1496 -------------GERRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMA 1556 (1956)
T ss_pred             -------------hHHHHHhhhhhhhhHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence                         1234444445666654333    221111111    1 12467788888877777776543

>KOG4404|consensus

Probab=88.75  E-value=0.24  Score=42.19  Aligned_cols=24  Identities=42%  Similarity=0.671  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPET  249 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t  249 (252)
                      .|.+|+|++++|+||+|  |.++-++
T Consensus       186 syfds~YyCFITltTIGFGDyValQ~  211 (350)
T KOG4404|consen  186 SYFDSYYYCFITLTTIGFGDYVALQQ  211 (350)
T ss_pred             chhhhhheeeeeeeeccccchhhhcc
Confidence            47889999999999998  7755444

>KOG3193|consensus

Probab=87.66  E-value=0.22  Score=45.33  Aligned_cols=110  Identities=21%  Similarity=0.312  Sum_probs=51.7

Q ss_pred             chHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy16082        126 AFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQA-  204 (252)
Q Consensus       126 ~f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~-  204 (252)
                      .|+++++..+|+.. ....++..++.++-++..+---...+..-+.........-..++-.++++.-..+|+-|.-.+. 
T Consensus       127 hfllelitsfpfii-~ifipsltylyvpvflncwlakgalqammndl~r~~~~s~sal~~ql~ll~s~l~clift~~c~i  205 (1087)
T KOG3193|consen  127 HFLLELITSFPFII-SIFIPSLTYLYVPVFLNCWLAKGALQAMMNDLNRKSFISSSALFRQLLLLFSVLACLIFTGMCSI  205 (1087)
T ss_pred             HHHHHHhhccccee-eeeccccceeechhhhhhhhhhhHHHHhhhhHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            68889999999843 3333444455555444433222222211111111111122223333444455567765543332 


Q ss_pred             cCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCC
Q psy16082        205 EGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQP  247 (252)
Q Consensus       205 ~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P  247 (252)
                      +..+      -..+..-+.++    |+|++++|.+|||  |- +|
T Consensus       206 ~h~q------ra~~k~i~lf~----s~y~v~vtfstvgygd~-~p  239 (1087)
T KOG3193|consen  206 EHLQ------RARGKRIDLFT----SFYFVMVTFSTVGYGDW-YP  239 (1087)
T ss_pred             HHHH------HccCceeeeee----eEEEEEEEEeecccccc-cc
Confidence            1111      00011123343    8999999999998  54 55

>PLN03223 Polycystin cation channel protein; Provisional

Probab=83.28  E-value=34  Score=35.42  Aligned_cols=59  Identities=10%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhhccc-----cccccCCccchhhhHHHHHHHHHHHhHhc
Q psy16082         42 DSNLYFYWLLIITCCVLYNLWTLIVRQSFP-----ELQENGAKFWFFCDYTTDTFIVLDILVQF  100 (252)
Q Consensus        42 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~-----~~~~~~~~~~~~~~~~~~~if~~Di~l~f  100 (252)
                      .+-++...+++.+++++|.++---..+.-.     .........|..+|++..++.++=+.+-|
T Consensus      1171 ~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223       1171 EDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence            344666666666666666655444332100     00012356888999988888777776643

>KOG3614|consensus

Probab=83.13  E-value=15  Score=37.43  Aligned_cols=87  Identities=17%  Similarity=0.346  Sum_probs=51.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHH
Q psy16082         42 DSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHY  121 (252)
Q Consensus        42 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Y  121 (252)
                      ..|...+|-.++..+.+..+++..+.+-|..    .++.+..+-++-.+.+++|.+=+..+.  +.+.+   +++++. |
T Consensus       789 sAPIvkFw~~~l~yi~FL~lftYvlLv~~~~----~Ps~~Ew~~~~~iftl~~E~vRq~~~s--e~~~l---~~kv~v-~  858 (1381)
T KOG3614|consen  789 SAPIVKFWLNVLSYIAFLLLFTYVLLVDFQP----SPSMWEWILFAWIFTLFLEEVRQIFIS--ESGLL---PQKVRV-Y  858 (1381)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHheeccCC----CCCccchhHHHHHHHHHHHHHHHHhcC--CCcch---hhHHHH-H
Confidence            4667778888877777777776666665532    223333333444455556666544433  22222   344544 4


Q ss_pred             hcccchHhHHHHhhhHH
Q psy16082        122 VKSRAFMLDIISLLPLD  138 (252)
Q Consensus       122 l~~~~f~~Dlis~lP~~  138 (252)
                      +...|+..|+++++-+.
T Consensus       859 f~d~wN~~d~~ai~~F~  875 (1381)
T KOG3614|consen  859 FADFWNLIDLLAILLFL  875 (1381)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44458999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.86
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.79
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.69
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.37
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.13
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.07
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	98.85
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.84
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	98.83
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	98.15
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	98.13
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	98.08
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	97.88
2q67_A	114	Potassium channel protein; inverted teepee, helix	97.87
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	97.69
3ouf_A	97	Potassium channel protein; ION channel, membrane,	97.68
1xl4_A	301	Inward rectifier potassium channel; integral membr	97.37
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.19
3sya_A	340	G protein-activated inward rectifier potassium CH;	96.91
1p7b_A	333	Integral membrane channel and cytosolic domains; t	96.78
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	96.58
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	96.49
3um7_A	309	Potassium channel subfamily K member 4; potassium	96.34
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	96.32
3um7_A	309	Potassium channel subfamily K member 4; potassium	95.66
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	95.58
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	95.58
1lnq_A	336	MTHK channels, potassium channel related protein;	94.37

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.86  E-value=1.7e-21  Score=158.57  Aligned_cols=174  Identities=17%  Similarity=0.243  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082         48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF  127 (252)
Q Consensus        48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f  127 (252)
                      .||.+++++++++.+.+.+.... ..+++....+..+|.+++++|.+|+++|+.++            +.+++|+|+  +
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------------~~~~~y~~~--~   73 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTM-QLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVKK--T   73 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHH-HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------------SCHHHHHHH--H
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------------ccHHHHHHH--h
Confidence            48889989999998887776332 22334566788999999999999999999987            224789986  7


Q ss_pred             HhHHHHhhhHHHHHhh-hC--CcchhHHHHHHHHHHHHHHHHHHHh---h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16082        128 MLDIISLLPLDLLYFK-IG--VNPMLRFPRFLKVYRVYDYYYIVES---R-TVYPNLWRVVNLVHILLIFAHWFGCFYYL  200 (252)
Q Consensus       128 ~~Dlis~lP~~~~~~~-~~--~~~~l~~lrllr~~rl~~~~~~~~~---~-~~~~~~~~l~~l~~~~l~~~H~~aC~~~~  200 (252)
                      ++|+++++|+...... .+  ....+|++|++|+.|+.|..+..++   . .......++..++..+++..|+.||++|.
T Consensus        74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (223)
T 1orq_C           74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI  153 (223)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999865421 11  1245666666666666665542111   0 00011124666777888889999999988


Q ss_pred             HHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        201 LSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       201 i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      +....          +    ++...+|..|+||+++||||+|  |+ +|.|..
T Consensus       154 ~e~~~----------~----~~~~~~~~~s~y~~~~t~tTvGyGdi-~P~t~~  191 (223)
T 1orq_C          154 VEYPD----------P----NSSIKSVFDALWWAVVTATTVGYGDV-VPATPI  191 (223)
T ss_dssp             TTSSS----------T----TCSCCSHHHHHHHHHHHHTTCCCCSS-CCCSHH
T ss_pred             HHhCC----------c----CCCcCcchhHHHhHHhHHhccCCCCC-CCCCHh
Confidence            74311          0    1113468889999999999999  66 998864

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.79  E-value=7.1e-20  Score=165.56  Aligned_cols=196  Identities=15%  Similarity=0.299  Sum_probs=129.7

Q ss_pred             cccccccCCCeeEcCC-ChhHHHHHHHHHHHHHHHHHHHHHhhccccccc--------------------------cCCc
Q psy16082         27 RCRRKKVHHSTVVNPD-SNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE--------------------------NGAK   79 (252)
Q Consensus        27 ~~~~~~~~~~~ii~P~-s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~--------------------------~~~~   79 (252)
                      +.+.|++.+..+-+|+ |...+.++.+++++++.+.+++.+. +++..+.                          ....
T Consensus       161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2r9r_B          161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTD  239 (514)
T ss_dssp             SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCC
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhh
Confidence            3344455555555686 5778999999999999998888776 4432111                          1234


Q ss_pred             cchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccchHhHHHHhhhHHHHHhhhC----------Ccch
Q psy16082         80 FWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAFMLDIISLLPLDLLYFKIG----------VNPM  149 (252)
Q Consensus        80 ~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~----------~~~~  149 (252)
                      .+..+|.++.++|++|+++|+.++            ..+.+|+|++|.++|+++++|+.+......          ....
T Consensus       240 ~l~~ie~i~~~iFtiE~ilR~~~~------------~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~  307 (514)
T 2r9r_B          240 PFFIVETLCIIWFSFEFLVRFFAC------------PSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRV  307 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS------------SCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------------CcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHH
Confidence            567899999999999999999976            112589999889999999999876443311          1224


Q ss_pred             hHHHHHHHHHHHHHHHHHHH---h--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchH
Q psy16082        150 LRFPRFLKVYRVYDYYYIVE---S--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLT  224 (252)
Q Consensus       150 l~~lrllr~~rl~~~~~~~~---~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~  224 (252)
                      +|++|++|++|++|..+..+   .  .........+..+++.+++..+++||+.|......          .    .+.+
T Consensus       308 lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~----------~----~~~F  373 (514)
T 2r9r_B          308 VQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADE----------R----DSQF  373 (514)
T ss_dssp             HHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------T----TCSC
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccC----------C----Cccc
Confidence            55555555555554433221   1  12223333455566667777888999888663210          1    1123


Q ss_pred             HHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        225 RKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       225 ~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      ..|..|+||+++||||+|  |+ .|.|.
T Consensus       374 ~s~~~a~y~~~vT~TTvGYGDi-~P~t~  400 (514)
T 2r9r_B          374 PSIPDAFWWAVVSMTTVGYGDM-VPTTI  400 (514)
T ss_dssp             SSHHHHHHHHHHHHTTCCCSSS-CCCSH
T ss_pred             cchhhhhheeeeEEEecccCCC-CCCCc
Confidence            346679999999999999  66 89874

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.69  E-value=7.3e-18  Score=146.17  Aligned_cols=179  Identities=10%  Similarity=0.142  Sum_probs=108.8

Q ss_pred             EcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHH
Q psy16082         39 VNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLA  118 (252)
Q Consensus        39 i~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~  118 (252)
                      ..|+|+..   +.+++++++.+.+.+... +.+.........+..++.++-++|++|+++++..+            +-.
T Consensus         3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~~   66 (355)
T 3beh_A            3 VLPFLRIY---APLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RAG   66 (355)
T ss_dssp             ----CCSS---SSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CSC
T ss_pred             CCchhHHH---HHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc------------ccc
Confidence            45777743   666666677777777766 45432222222234455565566899999988533            111


Q ss_pred             HHHhcccchHhHHHHh-hhHHHHHhhhCCcchhHHHHHHHHHHHHHH---HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy16082        119 GHYVKSRAFMLDIISL-LPLDLLYFKIGVNPMLRFPRFLKVYRVYDY---YYIVESRTVYPNLWRVVNLVHILLIFAHWF  194 (252)
Q Consensus       119 ~~Yl~~~~f~~Dlis~-lP~~~~~~~~~~~~~l~~lrllr~~rl~~~---~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~  194 (252)
                      ..|.++++.++|++++ +|+.....  ...+.+|++|++|++|+.|.   ++.+.. .......++..++..++++.|+.
T Consensus        67 ~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~~~~~  143 (355)
T 3beh_A           67 VVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGR-VLANEARNLIGVTTLFGVVLFAV  143 (355)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHH-HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            2355566899999999 68865432  22234444444444444443   333222 12223345667777788899999


Q ss_pred             HHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        195 GCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       195 aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      ||++|.+....              ..+.+..|..|+||+++||||+|  |+ +|.|+.
T Consensus       144 a~~~~~~e~~~--------------~~~~f~~~~~s~y~~~~t~ttvGygd~-~p~t~~  187 (355)
T 3beh_A          144 ALAAYVIERDI--------------QPEKFGSIPQAMWWAVVTLSTTGYGDT-IPQSFA  187 (355)
T ss_dssp             HHHHHHHHTTT--------------CHHHHSSHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred             HHHHHHhhcCC--------------CCcccccHHHHHHHHHhheeecCCCCC-CCCChh
Confidence            99999987521              12235568889999999999999  66 998854

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.37  E-value=3.8e-13  Score=113.02  Aligned_cols=173  Identities=12%  Similarity=0.119  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccc
Q psy16082         47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRA  126 (252)
Q Consensus        47 ~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~  126 (252)
                      ..++.+++++++.+.+.+.+.. ++.........+..+|.++.++|++|+++|+...          +    .+|++++|
T Consensus        30 ~~f~~~i~~li~l~~i~~~~~~-~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~----------~----~~y~~~~w   94 (285)
T 3rvy_A           30 SFFTKFIIYLIVLNGITMGLET-SKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH----------R----ISFFKDPW   94 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT----------G----GGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h----HHHHcCCh
Confidence            3678888888888888777663 3322333445567899999999999999999875          2    57999999


Q ss_pred             hHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16082        127 FMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQA  204 (252)
Q Consensus       127 f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~  204 (252)
                      .++|+++++|...  ...+.-+.+|++|++|++|+.++...++.  .......-.+..+...++++.-.+|++-+.+-..
T Consensus        95 n~~Dl~~v~~~~i--~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~  172 (285)
T 3rvy_A           95 SLFDFFVVAISLV--PTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE  172 (285)
T ss_dssp             HHHHHHHHHHHHS--CSSSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999988742  12222345566666666555555433332  1111222234444444444444555543333221


Q ss_pred             cCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC---CCCCCCCC
Q psy16082        205 EGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG---DLPQPETD  250 (252)
Q Consensus       205 ~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG---d~~~P~t~  250 (252)
                                    ...+.+..+..|+||+++++||+|   |++.|.+.
T Consensus       173 --------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~  207 (285)
T 3rvy_A          173 --------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLME  207 (285)
T ss_dssp             --------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHT
T ss_pred             --------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence                          012235556679999999999997   44346543

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.13  E-value=7.9e-11  Score=89.64  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=35.3

Q ss_pred             chHhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16082        126 AFMLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVESRTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAE  205 (252)
Q Consensus       126 ~f~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~  205 (252)
                      +-+.|+++++|..            |.+|++|++|++ +...  ........  +...++.+++..-+.|+++|.+....
T Consensus        15 ~~~~dli~~lp~l------------r~lRllRi~ril-l~r~--~~~l~~~~--~~~~~~~~~~~i~~~a~~~~~~E~~~   77 (155)
T 2a9h_A           15 EGRGRLIKHMPPM------------LSGLLARLVKLL-LGRH--GSALHWRA--AGAATVLLVIVLLAGSYLAVLAERGA   77 (155)
T ss_dssp             ----------------------------------------------CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHH------------HHHHHHHHHHHH-HHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4589999999983            455555555554 2111  11111111  11222223333445666666665321


Q ss_pred             CCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        206 GFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       206 ~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                                +    .+.+..|..|+||+++|+||+|  |+ +|.|+.
T Consensus        78 ----------~----~~~~~s~~~a~y~s~vTltTVGYGDi-~P~t~~  110 (155)
T 2a9h_A           78 ----------P----GAALISYPDALWWSVETATTVGYGDL-YPVTLW  110 (155)
T ss_dssp             ----------S----CSSTTSHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred             ----------C----CCccCcccceeheeeeeeecccCCCC-CCCChh
Confidence                      0    1223457779999999999999  77 998853

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.07  E-value=4.9e-10  Score=90.97  Aligned_cols=167  Identities=16%  Similarity=0.157  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082         48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF  127 (252)
Q Consensus        48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f  127 (252)
                      .++.++.++++.+.+....+. .+ ..+........+|.++.++|.+|+++|+...            .-.++|.+++|.
T Consensus        13 ~f~~~i~~~I~ln~i~l~~~~-~~-~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~~~y~~~~wn   78 (229)
T 4dxw_A           13 IFQFTVVSIIILNAVLIGATT-YE-LDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQKADFFKSGWN   78 (229)
T ss_dssp             HHHHHHHHHHHHHHHSTTTCC-SS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CchhHHhcCCcH
Confidence            567788888888877665442 32 1222234456799999999999999998764            234689999999


Q ss_pred             HhHHHHhhhHHHHHhhhCCcchhHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16082        128 MLDIISLLPLDLLYFKIGVNPMLRFPRFLKVYRVYDYYYIVES--RTVYPNLWRVVNLVHILLIFAHWFGCFYYLLSQAE  205 (252)
Q Consensus       128 ~~Dlis~lP~~~~~~~~~~~~~l~~lrllr~~rl~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~  205 (252)
                      ++|++.++|...-.........+|++|++|++|+.|..+.++.  .......-.+..+...++++...+|++-+.+-.. 
T Consensus        79 i~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~-  157 (229)
T 4dxw_A           79 IFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN-  157 (229)
T ss_dssp             HHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            9998877764321111112234566666666666665554443  2233344455566666666666666643333221 


Q ss_pred             CCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC
Q psy16082        206 GFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG  242 (252)
Q Consensus       206 ~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG  242 (252)
                               .++.+.++    ...|++|.+.++|+.|
T Consensus       158 ---------~~~~~F~~----~~~a~~~lf~~~t~~~  181 (229)
T 4dxw_A          158 ---------DDPSRWGD----LGISLITLFQVLTLSS  181 (229)
T ss_dssp             ---------TSCTTTSS----HHHHHHHHHHHHTTSS
T ss_pred             ---------CCcccccC----HHHHHHHHHHHHccCC
Confidence                     11123344    4449999999999998

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=98.85  E-value=3.9e-09  Score=79.46  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082         48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF  127 (252)
Q Consensus        48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f  127 (252)
                      .|+.++.++++.+.+.+.+....+. +.+....+..+|.++.++|++|+++++..+            +-.++|+++  -
T Consensus        22 ~f~~~i~~lil~sv~~v~~et~~~i-~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a------------~~k~~f~~~--~   86 (147)
T 2kyh_A           22 LVELGVSYAALLSVIVVVVEYTMQL-SGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVKK--T   86 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHH--S
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CcHHHHHHH--H
Confidence            4788888888888777777644322 222334567899999999999999999976            334578887  4


Q ss_pred             HhHHHHhhhHHHHH
Q psy16082        128 MLDIISLLPLDLLY  141 (252)
Q Consensus       128 ~~Dlis~lP~~~~~  141 (252)
                      ++|+++++|+....
T Consensus        87 iiDllailP~~~~~  100 (147)
T 2kyh_A           87 LYEIPALVPAGLLA  100 (147)
T ss_dssp             TTTHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999999997544

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.84  E-value=3.9e-09  Score=78.18  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccc
Q psy16082         47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRA  126 (252)
Q Consensus        47 ~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~  126 (252)
                      +.++.+++++++.+.+.+..+ ++++.+......+..+|.++.++|.+|+++|+..+            +-..+|++  +
T Consensus         6 ~~f~~~i~~lIlls~~~~~~e-t~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~------------~~~~~y~~--~   70 (132)
T 1ors_C            6 PLVELGVSYAALLSVIVVVVE-YTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVK--K   70 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSTTTTTT--T
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHH--H
Confidence            456888888888888777766 34332222334566899999999999999999875            22457888  6


Q ss_pred             hHhHHHHhhhHHHHH
Q psy16082        127 FMLDIISLLPLDLLY  141 (252)
Q Consensus       127 f~~Dlis~lP~~~~~  141 (252)
                      .++|+++++|+....
T Consensus        71 niiDllailp~~~~~   85 (132)
T 1ors_C           71 TLYEIPALVPAGLLA   85 (132)
T ss_dssp             CGGGTGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            799999999987543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=98.83  E-value=2.5e-09  Score=78.15  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      .|.+|+||+++|+||+|  |+ +|.|+.
T Consensus        61 ~~~~a~y~~~~T~tTvGyGDi-~P~t~~   87 (122)
T 2ih3_C           61 TYPRALWWACETATTVAYGDL-YPVTLW   87 (122)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred             ccccchhheeeeeeeeecCCC-CCCCcc
Confidence            47779999999999999  77 998853

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=98.15  E-value=1.3e-06  Score=65.03  Aligned_cols=58  Identities=24%  Similarity=0.243  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      .++..++.++...+..|++++.+.....              .+....|..|+||+++|+||+|  |+ .|.|+.
T Consensus         7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~--------------~~~~~~~~~a~yf~~~T~tTvGyGd~-~P~t~~   66 (139)
T 3eff_K            7 AAGAATVLLVIVLLAGSYLAVLAERGAP--------------GAQLITYPRALWWSVETATTVGYGDL-YPVTLW   66 (139)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTSSCT--------------TCCCCCHHHHHHHHHHHHTTCCCSSS-CCCSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------CcccCCHHHHHHHHheeeecccCCCC-cCCCcC
Confidence            3445555566666777777777654221              1112346779999999999999  77 998864

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=98.13  E-value=1.1e-06  Score=65.32  Aligned_cols=24  Identities=38%  Similarity=0.870  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      |.+|+||+++|+||||  |+ +|.|+.
T Consensus        44 ~~~a~y~~~~T~tTvGyGDi-~P~t~~   69 (137)
T 4h33_A           44 YPDALWWAIVTATTVGYGDI-VPVTPI   69 (137)
T ss_dssp             HHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred             HHHHHHHHHHHHHcccCCCC-CCCCHh
Confidence            7779999999999999  77 999864

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=98.08  E-value=7.2e-07  Score=62.95  Aligned_cols=59  Identities=20%  Similarity=0.141  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCCC
Q psy16082        179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDVE  252 (252)
Q Consensus       179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~E  252 (252)
                      +++..+..++.+....|++++.+....+              .+....|..|+||+++|+||+|  |+ .|.|..+
T Consensus         7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~--------------~~~~~~~~~a~y~~~~T~tTvGyGDi-~P~t~~g   67 (103)
T 2k1e_A            7 EAQKAEEELQKVLEEASKKAVEAERGAP--------------GAALISYPDAIWWSVETATTVGYGDR-YPVTEEG   67 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTST--------------TCCCCCGGGTTTTTTGGGGCCSCCSS-CCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCC--------------CcccccHHHHHHHHHHHHhcccCCCC-CCCChhH
Confidence            3444555666667778888888765211              1112246669999999999999  77 9998754

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=97.88  E-value=1.6e-05  Score=59.70  Aligned_cols=52  Identities=27%  Similarity=0.566  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        179 RVVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       179 ~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      +.+..++.++++.++.|++.|....      +|              .|..|+||+++|+||+|  |+ .|.|..
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~~~~~e------~~--------------~~~~a~y~~~~t~tTvGyGd~-~p~t~~   78 (148)
T 3vou_A           25 KEFQVLFVLTFLTLTSGTIFYSTVE------GL--------------RPLDALYFSVVTLTTVGDGNF-SPQTDF   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTS------CC--------------CHHHHHHHHHHHHTTCCCSSC-CCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CC--------------CHHHHHHHHHHHHHccCCCCC-CCCCcc
Confidence            3455566667777788888776421      12              36779999999999999  77 998753

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=97.87  E-value=8.1e-05  Score=53.27  Aligned_cols=24  Identities=42%  Similarity=0.887  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      .|.+|+||+++|+||+|  |+ .|.|+
T Consensus        49 ~~~~a~y~~~~T~tTvGyGdi-~P~t~   74 (114)
T 2q67_A           49 RPIDALYFSVVTLTTVGAGNF-SPQTD   74 (114)
T ss_dssp             CHHHHHHHHHHHHTSCCCSSC-CCCSH
T ss_pred             CHHHHHHHHHHHhcceeCCCC-ccCCH
Confidence            36679999999999999  77 89875

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=97.69  E-value=4.5e-05  Score=51.23  Aligned_cols=25  Identities=36%  Similarity=0.830  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      .|.+|+||+++|+||+|  |+ .|.|+.
T Consensus        28 ~~~~a~yf~~~T~tTvGyGdi-~P~t~~   54 (82)
T 3ldc_A           28 SWTVSLYWTFVTIATVGYGDY-SPHTPL   54 (82)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSS-CCCSHH
T ss_pred             CHHHHHHHHHHHhcccCCCCC-CCCCcc
Confidence            36669999999999999  77 998753

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=97.68  E-value=5.8e-05  Score=52.41  Aligned_cols=50  Identities=30%  Similarity=0.610  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        180 VVNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       180 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      .+...+.++++....+++.|....      +|              .|.+|+||+++|+||+|  |+ .|.|+
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e------~~--------------~~~~a~yf~~~T~tTvGyGdi-~P~t~   57 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVE------GL--------------RPIDALYFSVVTLTTVGYGDF-SPQTD   57 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS------CC--------------CHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc------CC--------------CHHHHHHHHHHHHHccCCCCC-CCCCc
Confidence            445555666667777777765431      12              36679999999999999  77 99875

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=97.37  E-value=0.00027  Score=59.31  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        185 HILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       185 ~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      ..+++...++|++|+..+..  .        ....    ...|..|+||+++|+||+|  |+ +|.|.
T Consensus        55 ~~~~~~~l~fa~ly~~~~~~--~--------~~~~----~~s~~~a~yfs~vT~tTvGYGDi-~P~t~  107 (301)
T 1xl4_A           55 GLYLVTNALFALAYLACGDV--I--------ENAR----PGSFTDAFFFSVQTMATIGYGKL-IPIGP  107 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTCSC--S--------TTSC----TTCHHHHHHHHHHHHTTCCCSSS-CCCHH
T ss_pred             HHHHHHHHHHHHHHHhhccc--c--------CCCC----cCCHHHHHHHhhhheeccCCCCC-cCCCH
Confidence            33445567889996665411  0        0011    2346679999999999999  76 89764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.19  E-value=0.00053  Score=62.52  Aligned_cols=58  Identities=28%  Similarity=0.540  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        176 NLWRVVNLVHILLIFAHWFGCFYYLLSQ-AEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       176 ~~~~l~~l~~~~l~~~H~~aC~~~~i~~-~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      ...++...++.++++.++.+|+++++.. .++.  .|              .|..|+||+++|+||+|  |+ +|.|.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~--------------~~~~~~y~~~~t~tTvGygd~-~p~~~   76 (565)
T 4gx0_A           16 NLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGR--AY--------------SFMAGIYWTITVMTTLGFGDI-TFESD   76 (565)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC--------------CHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CC--------------chhhhhheeeeeeeeecCCCc-CCCCc
Confidence            3445677777778888888888777654 2221  11              24569999999999999  77 88875

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=96.91  E-value=0.0042  Score=52.74  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC-----CCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCC
Q psy16082        183 LVHILLIFAHWFGCFYYLLSQAEGF-----YGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPET  249 (252)
Q Consensus       183 l~~~~l~~~H~~aC~~~~i~~~~~~-----~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t  249 (252)
                      ++..+++..-.+|++||.++...+.     +.+|..-.  .+..+    +..++||+++|+||+|  |+ +|.+
T Consensus        49 f~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv--~~~~s----f~~af~fSv~T~TTvGYGd~-~p~~  115 (340)
T 3sya_A           49 FVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV--TNLNG----FVSAFLFSIETETTIGYGYR-VITD  115 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB--SCCCS----TTHHHHHHHHHHSCCCCSSS-CBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchh--ccccC----HHHHHhhhheeeeeecCCCc-cCcC
Confidence            3334455556789999998854221     11221100  11233    3349999999999999  66 8863

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=96.78  E-value=0.00048  Score=58.51  Aligned_cols=23  Identities=39%  Similarity=0.878  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      |..|+||+++|+||+|  |+ +|.|.
T Consensus        97 ~~~a~yfs~vT~tTVGYGDi-~P~t~  121 (333)
T 1p7b_A           97 FVGAFFFSVETLATVGYGDM-HPQTV  121 (333)
T ss_dssp             THHHHHHHTTTTTTCCCSCC-CCCSH
T ss_pred             HHHhHhhhheeeeecCCCCC-cCCCH
Confidence            5569999999999999  76 99874

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=96.58  E-value=0.00025  Score=54.23  Aligned_cols=26  Identities=42%  Similarity=0.641  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETDVE  252 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~~E  252 (252)
                      .|..|+||+++|+||+|  |+ +|.|+.+
T Consensus        67 ~~~~a~yf~~~T~tTvGyGDi-~P~t~~~   94 (166)
T 3pjs_K           67 TYPRALWWSVETATTVGYGDL-YPVTLWG   94 (166)
T ss_dssp             STTTTTTTTHHHHSCCCCSSS-CCCSSTT
T ss_pred             CHHHHHHHHHHHhccccCCCC-CCCCHhH
Confidence            45669999999999999  77 9998764

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=96.49  E-value=0.0046  Score=52.51  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC------CCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCC
Q psy16082        182 NLVHILLIFAHWFGCFYYLLSQAEGF------YGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQP  247 (252)
Q Consensus       182 ~l~~~~l~~~H~~aC~~~~i~~~~~~------~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P  247 (252)
                      -++..+++..-.+|.+||+++...+.      +++|..-.  .+..+    +..++||+++|+||+|  |+ +|
T Consensus        50 ~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv--~~~~s----f~~af~fSv~T~TTvGYGd~-~p  116 (343)
T 3spc_A           50 LFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV--LQVNG----FVAAFLFSIETQTTIGYGFR-CV  116 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE--ETCCS----HHHHHHHHHHHHSCCCCSSS-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc--cccCC----HHHHhheeeeeeEeecCCCc-cC
Confidence            33345566677788999998765321      11231100  11233    4559999999999999  55 55

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=96.34  E-value=0.0092  Score=49.95  Aligned_cols=24  Identities=42%  Similarity=0.628  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      |++|+||+++|+||||  |+ .|.|+.
T Consensus       225 ~~da~y~~~vTltTvGyGd~-~p~t~~  250 (309)
T 3um7_A          225 KLEAIYFVIVTLTTVGFGDY-VAGADP  250 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCSSC-CTTCCT
T ss_pred             HHHHHHHHHhheeccccCCC-CCCCcc
Confidence            6679999999999999  77 898875

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=96.32  E-value=0.0097  Score=50.20  Aligned_cols=24  Identities=38%  Similarity=0.740  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      .|..|+||+++||||+|  |+ .|.|.
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi-~P~t~  103 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDM-HPQTV  103 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSS-CBCSH
T ss_pred             chhheeeeeeEEeccccCCCc-CcccH
Confidence            35669999999999999  77 89874

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=95.66  E-value=0.0057  Score=51.23  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      .|..|+||+++|+||+|  |+ +|.|+
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi-~P~T~  140 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNV-ALRTD  140 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSS-CCCSH
T ss_pred             ChhhhhHhhheeeeecccCCC-CCCCc
Confidence            58889999999999999  66 99985

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=95.58  E-value=0.0066  Score=50.08  Aligned_cols=24  Identities=38%  Similarity=0.731  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      |++|+||+++|+||+|  |+ .|.|+.
T Consensus       202 ~~da~y~~~iTltTvGyGD~-~p~t~~  227 (280)
T 3ukm_A          202 FLESFYFCFISLSTIGLGDY-VPGEGY  227 (280)
T ss_dssp             HHHHHHHHHHHHTTCCCCSC-CSSCSS
T ss_pred             hhhhhhheeeeeecccCCCC-CCCCCc
Confidence            5679999999999999  77 898863

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=95.58  E-value=0.0053  Score=50.66  Aligned_cols=24  Identities=21%  Similarity=0.573  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETD  250 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~  250 (252)
                      .|..|+||+++|+||+|  |+ +|.|+
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~-~P~T~  118 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHT-VPLSD  118 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSS-CCCSH
T ss_pred             ChhcchhheeeeeeccccCCc-CCCCc
Confidence            57789999999999999  66 99985

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.37  E-value=0.0084  Score=50.77  Aligned_cols=22  Identities=41%  Similarity=0.896  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        229 GSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       229 ~slywai~tlttvG--d~~~P~t~~  251 (252)
                      .|+||+++|+||+|  |+ .|.|..
T Consensus        48 ~a~y~~~~t~tTvGyGd~-~p~t~~   71 (336)
T 1lnq_A           48 VSLYWTFVTIATVGYGDY-SPSTPL   71 (336)
T ss_dssp             TTHHHHHHHHTTCCCSSC-CCCCSS
T ss_pred             HHHHHHHHHhhcccCCCC-CCCCcC
Confidence            39999999999999  66 898864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.73
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	98.24
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.19
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	98.19
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	97.89
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	97.23

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.73  E-value=5.5e-09  Score=75.53  Aligned_cols=107  Identities=18%  Similarity=0.173  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCccchhhhHHHHHHHHHHHhHhcceeEeeCCeEeeeHHHHHHHHhcccch
Q psy16082         48 YWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGLMVYNSMKLAGHYVKSRAF  127 (252)
Q Consensus        48 ~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~if~~Di~l~f~t~~~~~g~~i~~~~~i~~~Yl~~~~f  127 (252)
                      ..+..+.++++.+.+.+-++- .++..++....+..+|.++.++|.+|+++|+..+            .-..+|.+  +.
T Consensus         7 ~~e~~i~~lillnvi~~~let-~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~------------~~~~~~~~--~~   71 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEY-TMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVK--KT   71 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSTTTTTT--TC
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhC------------CccceeCC--cc
Confidence            457777788888887777663 3332334445567899999999999999999865            11234554  46


Q ss_pred             HhHHHHhhhHHHHHhhhCCc---chhHHHHHHHHHHHHHHHHHHH
Q psy16082        128 MLDIISLLPLDLLYFKIGVN---PMLRFPRFLKVYRVYDYYYIVE  169 (252)
Q Consensus       128 ~~Dlis~lP~~~~~~~~~~~---~~l~~lrllr~~rl~~~~~~~~  169 (252)
                      ++|+++++|........+..   +.+|++|++|++|+.++.+..+
T Consensus        72 ~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~  116 (132)
T d1orsc_          72 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS  116 (132)
T ss_dssp             GGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999987654443333   4555555555555555554433

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.24  E-value=2.5e-06  Score=58.43  Aligned_cols=25  Identities=44%  Similarity=0.678  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        226 KYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       226 ~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      .|.+|+||+++|+||+|  |+ +|.|+.
T Consensus        40 s~~~aly~~~vT~tTvGYGDi-~P~t~~   66 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDL-YPVTLW   66 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSS-CCCSHH
T ss_pred             chhhhhhhheeeecccccCcc-ccCChh
Confidence            36679999999999999  77 999853

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.19  E-value=4.7e-06  Score=50.02  Aligned_cols=48  Identities=21%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC
Q psy16082        181 VNLVHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG  242 (252)
Q Consensus       181 ~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG  242 (252)
                      ....+.++++.-.+|++.|+.....          ++.+..+..+    |+|||++||||||
T Consensus         9 ~~~~~~~~i~i~~~s~~~y~~E~~~----------~~~~f~sip~----a~WWaivT~TTVG   56 (57)
T d2h8pc1           9 GAATVLLVIVLLAGSYLAVLAERGA----------PGAQLITYPR----ALWWACETATTVG   56 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTS----------TTCCCCSHHH----HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC----------CCccccccch----hhhhheeeeeccc
Confidence            3344444555556788888887522          2223355444    9999999999999

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=98.19  E-value=3e-07  Score=64.63  Aligned_cols=53  Identities=19%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        184 VHILLIFAHWFGCFYYLLSQAEGFYGDWVYPYRVGEFSTLTRKYLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       184 ~~~~l~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      +...+.+.+++|++|+..+....              ......|.+|+||+++||||+|  |+ .|+|..
T Consensus        32 ~~~~~~~~~~fa~~y~~~~~~~~--------------~~~~~~~~~a~yfs~~T~tTvGYGDi-~P~t~~   86 (116)
T d1xl4a2          32 TGLYLVTNALFALAYLACGDVIE--------------NARPGSFTDAFFFSVQTMATIGYGKL-IPIGPL   86 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCST--------------TSCTTCHHHHHHHHHHHHTTCCCSSS-CCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC--------------CCCCCCHHHHHHHHHHHHccCCCCcc-ccCCcH
Confidence            33445666777777766543111              1112247779999999999999  76 998753

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=97.89  E-value=9.4e-07  Score=62.00  Aligned_cols=24  Identities=38%  Similarity=0.826  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      |.+|+||+++|+||+|  |+ +|.|..
T Consensus        62 ~~~a~yfs~~T~tTvGYGDi-~P~t~~   87 (116)
T d1p7ba2          62 FVGAFFFSVETLATVGYGDM-HPQTVY   87 (116)
T ss_dssp             THHHHHHHTTTTTTCCCSCC-CCCSHH
T ss_pred             HHHHHHHHHHHHHhcccccc-ccCCcH
Confidence            6679999999999999  77 998753

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.23  E-value=2.6e-05  Score=50.55  Aligned_cols=24  Identities=38%  Similarity=0.861  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCCCCCC
Q psy16082        227 YLGSIYWSTLTLTTIG--DLPQPETDV  251 (252)
Q Consensus       227 Y~~slywai~tlttvG--d~~~P~t~~  251 (252)
                      |.+|+||+++|+||+|  |. .|+|..
T Consensus        28 ~~dalyf~~~T~tTiGyGD~-~P~t~~   53 (80)
T d1lnqa2          28 WTVSLYWTFVTIATVGYGDY-SPSTPL   53 (80)
T ss_dssp             SSTTHHHHHHHHTTCCCSSC-CCCCSS
T ss_pred             HHHHHHHHhhheeeccCCCC-CCCCcc
Confidence            4449999999999998  77 999875