Psyllid ID: psy160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| 281360224 | 840 | lethal (2) 01289, isoform H [Drosophila | 0.800 | 0.329 | 0.601 | 5e-84 | |
| 195581000 | 717 | GD10307 [Drosophila simulans] gi|1941923 | 0.800 | 0.386 | 0.601 | 7e-84 | |
| 281360230 | 1372 | lethal (2) 01289, isoform J [Drosophila | 0.786 | 0.198 | 0.597 | 8e-84 | |
| 24586058 | 1703 | lethal (2) 01289, isoform B [Drosophila | 0.786 | 0.159 | 0.597 | 9e-84 | |
| 6984072 | 758 | l(2)01289 long form, partial [Drosophila | 0.786 | 0.358 | 0.597 | 9e-84 | |
| 195149133 | 665 | GL10981 [Drosophila persimilis] gi|19410 | 0.800 | 0.416 | 0.597 | 5e-83 | |
| 58388720 | 1700 | AGAP006452-PA [Anopheles gambiae str. PE | 0.777 | 0.158 | 0.564 | 3e-82 | |
| 157127526 | 702 | hypothetical protein AaeL_AAEL010839 [Ae | 0.777 | 0.383 | 0.567 | 3e-82 | |
| 242018265 | 1887 | predicted protein [Pediculus humanus cor | 0.783 | 0.143 | 0.554 | 6e-82 | |
| 328777630 | 1761 | PREDICTED: hypothetical protein LOC41393 | 0.791 | 0.155 | 0.515 | 1e-81 |
| >gi|281360224|ref|NP_001036474.2| lethal (2) 01289, isoform H [Drosophila melanogaster] gi|272432353|gb|ABI31025.2| lethal (2) 01289, isoform H [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/281 (60%), Positives = 213/281 (75%), Gaps = 4/281 (1%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A +Y + LP++V+F+ +
Sbjct: 286 IFYSDE-CKQCPRVLAEVEHIDDEADKAGIDFVKIDDKQMAKEYGVFALPAIVFFKPTSK 344
Query: 59 VPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKD 118
P++Y GDL++EE+ILTWL +Q + IE++ L L+EE+ + V+FY +
Sbjct: 345 EPVIYAGDLYEEEQILTWLITQKD-PSGDVIEDLEGERLVHLIEESGSIAVYFYADGCEQ 403
Query: 119 SVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 178
KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G+LSEE
Sbjct: 404 CTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEGELSEE 463
Query: 179 EEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC 238
EEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE +DDEC
Sbjct: 464 EEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLELIDDEC 523
Query: 239 DIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
D++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 524 DVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 564
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195581000|ref|XP_002080322.1| GD10307 [Drosophila simulans] gi|194192331|gb|EDX05907.1| GD10307 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/281 (60%), Positives = 213/281 (75%), Gaps = 4/281 (1%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A +Y + LP++V+F+ +
Sbjct: 154 IFYSDE-CKQCPRVLAEVEHIDDEADKAGIDFVKIDDKQMAKEYGVFALPAIVFFKPTSK 212
Query: 59 VPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKD 118
P++Y GDL++EE+ILTWL +Q + IE++ L L+EE+ + V+FY +
Sbjct: 213 EPVIYAGDLYEEEQILTWLITQKD-PSGDVIEDLEGERLVHLIEESGSIAVYFYADGCEQ 271
Query: 119 SVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 178
KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G+LSEE
Sbjct: 272 CTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEGELSEE 331
Query: 179 EEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC 238
EEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE +DDEC
Sbjct: 332 EEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLELIDDEC 391
Query: 239 DIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
D++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 392 DVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 432
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|281360230|ref|NP_001163066.1| lethal (2) 01289, isoform J [Drosophila melanogaster] gi|272432356|gb|ACZ94346.1| lethal (2) 01289, isoform J [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 214/286 (74%), Gaps = 14/286 (4%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A +Y + LP++V+F+ +
Sbjct: 818 IFYSDE-CKQCPRVLAEVEHIDDEADKAGIDFVKIDDKQMAKEYGVFALPAIVFFKPTSK 876
Query: 59 VPLLYDGDLFDEEKILTWLTSQ-----DVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYE 113
P++Y GDL++EE+ILTWL +Q DV IE++ L L+EE+ + V+FY
Sbjct: 877 EPVIYAGDLYEEEQILTWLITQKDPSGDV------IEDLEGERLVHLIEESGSIAVYFYA 930
Query: 114 TDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRG 173
+ KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G
Sbjct: 931 DGCEQCTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEG 990
Query: 174 DLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK 233
+LSEEEEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE
Sbjct: 991 ELSEEEEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLEL 1050
Query: 234 VDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+DDECD++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 1051 IDDECDVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 1096
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24586058|ref|NP_724492.1| lethal (2) 01289, isoform B [Drosophila melanogaster] gi|6984065|gb|AAF34746.1| l(2)01289 long form [Drosophila melanogaster] gi|23240199|gb|AAN16126.1| lethal (2) 01289, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 214/286 (74%), Gaps = 14/286 (4%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A +Y + LP++V+F+ +
Sbjct: 1149 IFYSDE-CKQCPRVLAEVEHIDDEADKAGIDFVKIDDKQMAKEYGVFALPAIVFFKPTSK 1207
Query: 59 VPLLYDGDLFDEEKILTWLTSQ-----DVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYE 113
P++Y GDL++EE+ILTWL +Q DV IE++ L L+EE+ + V+FY
Sbjct: 1208 EPVIYAGDLYEEEQILTWLITQKDPSGDV------IEDLEGERLVHLIEESGSIAVYFYA 1261
Query: 114 TDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRG 173
+ KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G
Sbjct: 1262 DGCEQCTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEG 1321
Query: 174 DLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK 233
+LSEEEEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE
Sbjct: 1322 ELSEEEEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLEL 1381
Query: 234 VDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+DDECD++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 1382 IDDECDVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 1427
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|6984072|gb|AAF34750.1| l(2)01289 long form, partial [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 214/286 (74%), Gaps = 14/286 (4%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A +Y + LP++V+F+ +
Sbjct: 336 IFYSDE-CKQCPRVLAEVEHIDDEADKAGIDFVKIDDKQMAKEYGVFALPAIVFFKPTSK 394
Query: 59 VPLLYDGDLFDEEKILTWLTSQ-----DVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYE 113
P++Y GDL++EE+ILTWL +Q DV IE++ L L+EE+ + V+FY
Sbjct: 395 EPVIYAGDLYEEEQILTWLITQKDPSGDV------IEDLEGERLVHLIEESGSIAVYFYA 448
Query: 114 TDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRG 173
+ KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G
Sbjct: 449 DGCEQCTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEG 508
Query: 174 DLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK 233
+LSEEEEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE
Sbjct: 509 ELSEEEEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLEL 568
Query: 234 VDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+DDECD++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 569 IDDECDVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 614
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195149133|ref|XP_002015512.1| GL10981 [Drosophila persimilis] gi|194109359|gb|EDW31402.1| GL10981 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/281 (59%), Positives = 213/281 (75%), Gaps = 4/281 (1%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQ 58
++ +DE C +C +L E+EHID +AD+ GID VKI D + A ++ + LP++V+F+ +
Sbjct: 111 IFYSDE-CKQCPRVLVEVEHIDDEADKAGIDFVKIDDKQMAKEFGVFALPAIVFFKPTSK 169
Query: 59 VPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKD 118
P++Y GDL++EE+ILTWL +Q + IE++ L L+EE+ + V+FY +
Sbjct: 170 EPVIYAGDLYEEEQILTWLITQKD-PSGDVIEDLEGERLVHLIEESGSIAVYFYADGCEQ 228
Query: 119 SVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 178
KVLE LE ID + D ITFVK D A +GV + PA+VYF P+++ G+LSEE
Sbjct: 229 CTKVLEELENIDDDCDKHGITFVKTRDFSVADGYGVHEYPALVYFEGGIPNVFEGELSEE 288
Query: 179 EEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC 238
EEVLQWLITQKTEDRIELITR MLETMVEETQYLAVYFYK+NCNICDQILEGLE +DDEC
Sbjct: 289 EEVLQWLITQKTEDRIELITRQMLETMVEETQYLAVYFYKINCNICDQILEGLELIDDEC 348
Query: 239 DIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
D++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL+FEG+
Sbjct: 349 DVFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLFEGD 389
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|58388720|ref|XP_316491.2| AGAP006452-PA [Anopheles gambiae str. PEST] gi|55239222|gb|EAA11892.2| AGAP006452-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 158/280 (56%), Positives = 205/280 (73%), Gaps = 11/280 (3%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQVPLLY 63
++C +C +L E+EHID +AD GI+ VKI D + A + + LP +V+F+ + P++Y
Sbjct: 1150 DDCKQCPRVLAEIEHIDDEADGAGINFVKIDDKQMAKELGVYALPGIVFFKLSSKEPVIY 1209
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNE----IEEVNRRMLDKLLEENEFVTVFFYETDHKDS 119
GDL DE++IL WL +Q KN IE+++ L L+E++ + V+FY + +
Sbjct: 1210 AGDLNDEDEILNWLMTQ-----KNPGGDVIEDLDGPKLLALIEDSNALAVYFYTDECEQC 1264
Query: 120 VKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 179
VLE LE ID + D I FVK D A ++G+++ P +VYF P+++ G L EEE
Sbjct: 1265 SGVLESLENIDDDCDRHGIMFVKTDDLSIAEQYGISEYPVLVYFEDNVPNVFEGSLDEEE 1324
Query: 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD 239
EVLQWLITQKTEDRIELITRVMLE+MV+ETQYLAVYFYK+NCNICDQILEGLE +DDE D
Sbjct: 1325 EVLQWLITQKTEDRIELITRVMLESMVDETQYLAVYFYKINCNICDQILEGLEVIDDELD 1384
Query: 240 IYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLI+EG+
Sbjct: 1385 VFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIYEGD 1424
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157127526|ref|XP_001661073.1| hypothetical protein AaeL_AAEL010839 [Aedes aegypti] gi|108872902|gb|EAT37127.1| AAEL010839-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 202/280 (72%), Gaps = 11/280 (3%)
Query: 6 ENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQVPLLY 63
E+C +C +L E+EHID +AD GI+ VKI D + A + + LP +V+F+ + P++Y
Sbjct: 152 EDCKQCPRVLAEIEHIDDEADGAGINFVKIDDKQMAKELGVYALPGIVFFKLSSKDPVIY 211
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNE----IEEVNRRMLDKLLEENEFVTVFFYETDHKDS 119
GDL +E++IL WL +Q KN IE+++ L L+E++ + V+FY + +
Sbjct: 212 AGDLNNEDEILNWLMTQ-----KNPGGDVIEDLDGSKLLALIEDSSALAVYFYADNCEQC 266
Query: 120 VKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 179
VLE LE ID + D I FVK D A +G+T P +VYF P+++ G L EEE
Sbjct: 267 SSVLESLENIDDDCDRHGIMFVKTDDLTIAEHYGITDYPVLVYFEDNIPNVFEGSLDEEE 326
Query: 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD 239
EVLQWLITQKTEDRIELITRVMLE MVEETQYLAVYFYK+NCNICDQILEGLE +DDE D
Sbjct: 327 EVLQWLITQKTEDRIELITRVMLEDMVEETQYLAVYFYKINCNICDQILEGLEVIDDELD 386
Query: 240 IYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
++GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPL++EG+
Sbjct: 387 VFGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLLYEGD 426
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018265|ref|XP_002429599.1| predicted protein [Pediculus humanus corporis] gi|212514566|gb|EEB16861.1| predicted protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/274 (55%), Positives = 203/274 (74%), Gaps = 3/274 (1%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQVPLLYDG 65
C +CD +L ELEHID DA GI VKI+D + A + I LP++ +++ + P++Y G
Sbjct: 1345 CKQCDRVLMELEHIDDDAANAGIKFVKINDKKMAKEMGIFALPAVAFYKMGSKEPVIYAG 1404
Query: 66 DLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER 125
DL+DEE+IL WL +Q + IEE++ L K++ +++++ V+F + ++E
Sbjct: 1405 DLYDEEQILQWLLTQKD-PSGDAIEELDGENLKKIIRDSDYLAVYFCSENCGQCQIIVEE 1463
Query: 126 LEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185
LE ID + D I FVK D A+++GV + P++VYF P+++ GDL EEEEVLQWL
Sbjct: 1464 LENIDDDCDRHGIQFVKTQDLEVAKEFGVIEFPSLVYFEKGVPNVFEGDLMEEEEVLQWL 1523
Query: 186 ITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHM 245
ITQKTEDRIELITRVMLE MV+ETQYLAVYFYKLNC+ICD++LEGLE +DDECD++GIH+
Sbjct: 1524 ITQKTEDRIELITRVMLEDMVQETQYLAVYFYKLNCHICDELLEGLENIDDECDVFGIHL 1583
Query: 246 VKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
VKIQDP LAKRY IKTFPALVYFRNGNPL++EG+
Sbjct: 1584 VKIQDPPLAKRYGIKTFPALVYFRNGNPLLYEGD 1617
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328777630|ref|XP_397374.4| PREDICTED: hypothetical protein LOC413936 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 214/316 (67%), Gaps = 42/316 (13%)
Query: 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFR--KQV 59
Y ND C +C +L E+EHID +AD GI VKI D + + +Y + LP++++F+ +
Sbjct: 1174 YSND--CKQCSRVLTEIEHIDDEADSVGIKFVKIDDKQLSKQYGVFALPAILFFKMSSKE 1231
Query: 60 PLLYDGDLFDEEKILTWLTSQDVFEIKNE-IEEVNRRMLDKLLEENEFVTVFFY------ 112
P++Y GDL+DE++IL WL +Q + E IE++ L L+ E+E + V+F+
Sbjct: 1232 PVIYAGDLYDEDQILQWLLTQK--DPSGEVIEDLEGEELLHLIRESESLAVYFWNRTLCD 1289
Query: 113 ---------ETDHKDS--------------------VKVLERLEKIDGETDNMDITFVKM 143
+T HK+ + +LE LE ID + D ITF+K
Sbjct: 1290 LCQAKYQRKQTRHKERRIVEHDAAEELDDAEDCEQCMGILEELENIDDDCDRHGITFIKT 1349
Query: 144 ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLE 203
D + A +GVT P +VYF ++ P+++ GDL EEEVLQWLITQKTEDRIELITR+MLE
Sbjct: 1350 QDFKVAEDYGVTDFPVLVYFENQIPNVFEGDLKVEEEVLQWLITQKTEDRIELITRMMLE 1409
Query: 204 TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFP 263
T VEETQYLAVYFYKLNC+ICD+ILEGLEK+DDECD++GIH+VKIQDPQLAKRYSIKTFP
Sbjct: 1410 TSVEETQYLAVYFYKLNCHICDEILEGLEKIDDECDVFGIHLVKIQDPQLAKRYSIKTFP 1469
Query: 264 ALVYFRNGNPLIFEGE 279
ALVYFRNGNPL+FEG+
Sbjct: 1470 ALVYFRNGNPLLFEGD 1485
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| FB|FBgn0010482 | 1786 | l(2)01289 "lethal (2) 01289" [ | 0.534 | 0.103 | 0.724 | 8.5e-72 | |
| WB|WBGene00017065 | 363 | D2092.4 [Caenorhabditis elegan | 0.343 | 0.327 | 0.319 | 1.1e-10 | |
| DICTYBASE|DDB_G0295811 | 303 | DDB_G0295811 "thioredoxin fold | 0.482 | 0.551 | 0.263 | 1.4e-05 | |
| UNIPROTKB|Q81Z85 | 104 | BAS0373 "Uncharacterized prote | 0.219 | 0.730 | 0.311 | 1.6e-05 | |
| TIGR_CMR|BA_0387 | 104 | BA_0387 "conserved hypothetica | 0.219 | 0.730 | 0.311 | 1.6e-05 | |
| CGD|CAL0000819 | 103 | TRX1 [Candida albicans (taxid: | 0.219 | 0.737 | 0.304 | 0.00025 | |
| UNIPROTKB|Q5ACN1 | 103 | TRX1 "Thioredoxin" [Candida al | 0.219 | 0.737 | 0.304 | 0.00025 |
| FB|FBgn0010482 l(2)01289 "lethal (2) 01289" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 8.5e-72, P = 8.5e-72
Identities = 134/185 (72%), Positives = 159/185 (85%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVP 60
++ D++C EC++ILEELE IDG+AD +GID VKI+ +AA KY I+N+PSLVYFRKQVP
Sbjct: 1553 VFFYDDDCAECEEILEELEEIDGEADMFGIDFVKIASIQAAKKYEIVNIPSLVYFRKQVP 1612
Query: 61 LLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSV 120
+LYDGDL +K++TWLTSQDVFEIKNEIEEVNR+MLDKLLEENEF+ VFFYE + DS
Sbjct: 1613 VLYDGDLHQHDKVITWLTSQDVFEIKNEIEEVNRKMLDKLLEENEFLAVFFYEHNQPDST 1672
Query: 121 KVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180
LE+LE ID ETDN+DITFVKMAD RYA+KWGVTKLPA+VYFR RFPSIYRGDL E+E
Sbjct: 1673 AALEKLENIDSETDNLDITFVKMADSRYAKKWGVTKLPAMVYFRRRFPSIYRGDLLSEDE 1732
Query: 181 VLQWL 185
VL+WL
Sbjct: 1733 VLEWL 1737
|
|
| WB|WBGene00017065 D2092.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 1 MYINDENCPECDDILEELEHIDGDADQYG-IDMVKISDTEAAAKYNIINLPSLVYFRKQV 59
+Y CP C + L E+E ID D + G + +VK +D A + I PSLVY+R++
Sbjct: 100 LYDGKVPCPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLVYYRRKN 159
Query: 60 PLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVT--VFFYETDHK 117
P+LYDGD D E +L WL + + + ++ D + + V FY+ D
Sbjct: 160 PILYDGDFKDSETLLRWLRAHEEVATWDLTDDTFESRTDSHSPDEGSIDWFVMFYDADEG 219
Query: 118 DS 119
+S
Sbjct: 220 NS 221
|
|
| DICTYBASE|DDB_G0295811 DDB_G0295811 "thioredoxin fold domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 48/182 (26%), Positives = 81/182 (44%)
Query: 7 NCPECDDILEEL-EHIDGDADQYGIDMVKISDTEAAA---KYNIINLPSLVYFRKQVPLL 62
+C + +LE L +H + D + + + ++ E + KYNII PSLV+F +
Sbjct: 20 HCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKH 79
Query: 63 YDGD-LFD--EEKILTWLTSQDVFEIKNE---IEEVNRRMLDKLLEENEFVTVFFYETDH 116
Y G LF+ +E I L + V +N+ I + LD LL N V + H
Sbjct: 80 YRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLH 139
Query: 117 -KDSVKVLERL-EKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIY 171
K VLE L + + + +N + ++ D +K+ +T P++V+F Y
Sbjct: 140 CKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHY 199
Query: 172 RG 173
G
Sbjct: 200 TG 201
|
|
| UNIPROTKB|Q81Z85 BAS0373 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ-LAKRYSIK 260
L T +EE Q + ++ NC +CD +L + V + D + +QD Q +A RY++
Sbjct: 10 LATYIEEQQLVLLFIKTENCGVCDVMLRNVNYVLENYDYVEKIEILLQDMQEVAGRYAVF 69
Query: 261 TFPALVYFRNGNPLIFE 277
T P ++ F NG ++ E
Sbjct: 70 TGPTILLFHNGKEILRE 86
|
|
| TIGR_CMR|BA_0387 BA_0387 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ-LAKRYSIK 260
L T +EE Q + ++ NC +CD +L + V + D + +QD Q +A RY++
Sbjct: 10 LATYIEEQQLVLLFIKTENCGVCDVMLRNVNYVLENYDYVEKIEILLQDMQEVAGRYAVF 69
Query: 261 TFPALVYFRNGNPLIFE 277
T P ++ F NG ++ E
Sbjct: 70 TGPTILLFHNGKEILRE 86
|
|
| CGD|CAL0000819 TRX1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 194 IELITRVM-LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ 252
+ ++T V +T+++E + V F+ C C I LEK +E I +KI Q
Sbjct: 2 VHVVTEVNEFQTLLKENNLVIVDFFATWCGPCKMIAPLLEKFQNEYS--NIKFLKIDVDQ 59
Query: 253 L---AKRYSIKTFPALVYFRNG 271
L A+ Y++ + P L+ F+NG
Sbjct: 60 LGSLAQEYNVSSMPTLILFKNG 81
|
|
| UNIPROTKB|Q5ACN1 TRX1 "Thioredoxin" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 194 IELITRVM-LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQ 252
+ ++T V +T+++E + V F+ C C I LEK +E I +KI Q
Sbjct: 2 VHVVTEVNEFQTLLKENNLVIVDFFATWCGPCKMIAPLLEKFQNEYS--NIKFLKIDVDQ 59
Query: 253 L---AKRYSIKTFPALVYFRNG 271
L A+ Y++ + P L+ F+NG
Sbjct: 60 LGSLAQEYNVSSMPTLILFKNG 81
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.141 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 346 346 0.00098 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 602 (64 KB)
Total size of DFA: 236 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.97u 0.10s 31.07t Elapsed: 00:00:19
Total cpu time: 30.97u 0.10s 31.07t Elapsed: 00:00:19
Start: Thu Aug 15 13:28:56 2013 End: Thu Aug 15 13:29:15 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 346 | |||
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 1e-05 | |
| pfam13848 | 183 | pfam13848, Thioredoxin_6, Thioredoxin-like domain | 5e-04 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 0.003 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYS 258
E +++ + + V F+ C C I LE++ +E + VK+ ++P+LA+ Y
Sbjct: 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDENPELAEEYG 60
Query: 259 IKTFPALVYFRNG 271
+++ P ++F+NG
Sbjct: 61 VRSIPTFLFFKNG 73
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 17/161 (10%)
Query: 35 ISDTEAAAKYNIINLPSLVYFRKQ--VPLLYDGDL-FDEEKILTWLTSQDVFEIKNEIEE 91
D E A KY I P+++ FRK + Y G+ + + ++ + E
Sbjct: 28 TFDKEVAKKYGI-KEPTILLFRKFDEKQVTYPGEDKTTFDDLKKFIQKN----SLPLVGE 82
Query: 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDG-ETDNMDITFVKMAD-PRYA 149
++L E + + + F + D +++ K+ R+E++ ++ V R
Sbjct: 83 FTPENAEELFESGKPL-LLFIKKDSEETEKLKNRVEEVAKKFKGKINFATVDGKSFGRVL 141
Query: 150 RKWGVT--KLPAVVY---FRHRFPSIYRGDLSEEEEVLQWL 185
G++ LP +V H+ + S E + ++L
Sbjct: 142 EYLGLSSADLPVIVIVDSASHKKKYFPEDEFS-PESLKEFL 181
|
Length = 183 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI---QDPQ 252
+T + +V++++ + V FY C C + EK+ E G + + K+ +
Sbjct: 3 LTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND 62
Query: 253 LAKRYSIKTFPALVYFRNG--NPLIFEGE 279
L Y ++ +P + F NG P+ +EG
Sbjct: 63 LCSEYGVRGYPTIKLFPNGSKEPVKYEGP 91
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| KOG0190|consensus | 493 | 100.0 | ||
| PTZ00102 | 477 | disulphide isomerase; Provisional | 100.0 | |
| KOG0191|consensus | 383 | 100.0 | ||
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 100.0 | |
| KOG0190|consensus | 493 | 99.95 | ||
| KOG0191|consensus | 383 | 99.94 | ||
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.93 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.92 | |
| KOG4277|consensus | 468 | 99.9 | ||
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.88 | |
| KOG4277|consensus | 468 | 99.88 | ||
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.85 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.82 | |
| KOG0912|consensus | 375 | 99.82 | ||
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.79 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.78 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 99.77 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.77 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.77 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.77 | |
| KOG0912|consensus | 375 | 99.77 | ||
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.75 | |
| KOG0910|consensus | 150 | 99.73 | ||
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.73 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.71 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.71 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.7 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.7 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.69 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.69 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.69 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.69 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.69 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.68 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.68 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.68 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.68 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.66 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.66 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.65 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.65 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.65 | |
| KOG0910|consensus | 150 | 99.65 | ||
| PHA02278 | 103 | thioredoxin-like protein | 99.64 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.64 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.63 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.63 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.63 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.62 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.62 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.61 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.61 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.61 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.6 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.6 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.6 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 99.6 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.6 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.6 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 99.6 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.59 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.59 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.59 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.59 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.59 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.59 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.59 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.58 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.57 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.57 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.57 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.57 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 99.57 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.56 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 99.56 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.56 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.56 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.56 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.55 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.55 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.55 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.53 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.53 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.53 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.53 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.52 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.52 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.52 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.52 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.51 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 99.51 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.51 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.5 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.48 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.48 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.48 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.46 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 99.46 | |
| KOG0907|consensus | 106 | 99.45 | ||
| PTZ00051 | 98 | thioredoxin; Provisional | 99.45 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.45 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.45 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 99.44 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.44 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.42 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.42 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.41 | |
| KOG1731|consensus | 606 | 99.41 | ||
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.4 | |
| KOG0907|consensus | 106 | 99.4 | ||
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.39 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.38 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.38 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.37 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.37 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.35 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.32 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.32 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.31 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.3 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.3 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 99.28 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.26 | |
| KOG0908|consensus | 288 | 99.25 | ||
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.25 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.23 | |
| KOG0908|consensus | 288 | 99.23 | ||
| KOG1731|consensus | 606 | 99.22 | ||
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.22 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 99.21 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.18 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.17 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.15 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.13 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.11 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.08 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.06 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.01 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.95 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.92 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.91 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 98.9 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.86 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.82 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.79 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.79 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.78 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 98.75 | |
| KOG0913|consensus | 248 | 98.74 | ||
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 98.74 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.73 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 98.73 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 98.73 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 98.72 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 98.72 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 98.71 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 98.69 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 98.69 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 98.68 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 98.68 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 98.68 | |
| KOG0913|consensus | 248 | 98.68 | ||
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.65 | |
| KOG0914|consensus | 265 | 98.65 | ||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 98.64 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 98.64 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.63 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 98.6 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 98.6 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 98.57 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 98.57 | |
| KOG0914|consensus | 265 | 98.57 | ||
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.57 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 98.56 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 98.55 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 98.55 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 98.53 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 98.53 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.51 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 98.49 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 98.48 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 98.48 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 98.48 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 98.46 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.43 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.43 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.42 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 98.41 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 98.39 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 98.37 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 98.37 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 98.36 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.32 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.31 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 98.28 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 98.28 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 98.28 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.28 | |
| smart00594 | 122 | UAS UAS domain. | 98.28 | |
| cd02981 | 97 | PDI_b_family Protein Disulfide Isomerase (PDIb) fa | 98.26 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 98.25 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.23 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 98.22 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 98.21 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.18 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.14 | |
| smart00594 | 122 | UAS UAS domain. | 98.12 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 98.11 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 98.1 | |
| cd02981 | 97 | PDI_b_family Protein Disulfide Isomerase (PDIb) fa | 98.1 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 98.07 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.05 | |
| KOG2501|consensus | 157 | 97.99 | ||
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.99 | |
| cd03067 | 112 | PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin | 97.98 | |
| KOG2501|consensus | 157 | 97.91 | ||
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 97.91 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.9 | |
| KOG0911|consensus | 227 | 97.9 | ||
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 97.89 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 97.89 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 97.88 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.85 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.83 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.82 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.82 | |
| PF07912 | 126 | ERp29_N: ERp29, N-terminal domain; InterPro: IPR01 | 97.81 | |
| KOG1672|consensus | 211 | 97.79 | ||
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 97.78 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.78 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.78 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.77 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.76 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 97.74 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 97.74 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.71 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.69 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.65 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 97.65 | |
| PF07912 | 126 | ERp29_N: ERp29, N-terminal domain; InterPro: IPR01 | 97.64 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 97.64 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.62 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 97.6 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 97.6 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.59 | |
| KOG0911|consensus | 227 | 97.57 | ||
| PLN02412 | 167 | probable glutathione peroxidase | 97.56 | |
| KOG1672|consensus | 211 | 97.56 | ||
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 97.52 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 97.5 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 97.48 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.48 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.46 | |
| cd03069 | 104 | PDI_b_ERp57 PDIb family, ERp57 subfamily, first re | 97.46 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 97.45 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 97.44 | |
| KOG3425|consensus | 128 | 97.43 | ||
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 97.43 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.39 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 97.39 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.38 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 97.37 | |
| cd03066 | 102 | PDI_b_Calsequestrin_middle PDIb family, Calsequest | 97.37 | |
| KOG3414|consensus | 142 | 97.37 | ||
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.36 | |
| cd03069 | 104 | PDI_b_ERp57 PDIb family, ERp57 subfamily, first re | 97.35 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 97.28 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.28 | |
| cd03066 | 102 | PDI_b_Calsequestrin_middle PDIb family, Calsequest | 97.26 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 97.23 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.23 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 97.2 | |
| KOG3425|consensus | 128 | 97.2 | ||
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 97.19 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 97.14 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 97.14 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 97.1 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 97.09 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 97.08 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 97.07 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.05 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 97.02 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 97.01 | |
| KOG2603|consensus | 331 | 96.98 | ||
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 96.96 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.92 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 96.91 | |
| PLN02412 | 167 | probable glutathione peroxidase | 96.91 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 96.9 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 96.89 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.86 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 96.84 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.84 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 96.83 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.81 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 96.81 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 96.8 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.8 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 96.79 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 96.79 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 96.77 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 96.74 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.72 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 96.72 | |
| KOG3414|consensus | 142 | 96.72 | ||
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 96.71 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.71 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 96.71 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.7 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 96.66 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 96.64 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 96.63 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 96.59 | |
| cd03068 | 107 | PDI_b_ERp72 PDIb family, ERp72 subfamily, first re | 96.49 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 96.47 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.41 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 96.4 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 96.37 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.37 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 96.26 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 96.25 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.22 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 96.2 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.14 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 96.14 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.09 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 96.06 | |
| cd03068 | 107 | PDI_b_ERp72 PDIb family, ERp72 subfamily, first re | 96.04 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 95.99 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 95.98 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 95.95 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 95.93 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 95.91 | |
| PRK15000 | 200 | peroxidase; Provisional | 95.89 | |
| PRK15000 | 200 | peroxidase; Provisional | 95.85 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 95.76 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 95.75 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 95.7 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.58 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 95.57 | |
| KOG2640|consensus | 319 | 95.57 | ||
| KOG2640|consensus | 319 | 95.55 | ||
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 95.54 | |
| KOG3171|consensus | 273 | 95.52 | ||
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 95.45 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.38 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 95.36 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 95.34 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 95.14 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.1 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 95.04 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 94.91 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 94.86 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 94.82 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.81 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 94.76 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 94.75 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 94.7 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 94.67 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 94.66 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.63 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 94.62 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 94.62 | |
| KOG3170|consensus | 240 | 94.6 | ||
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 94.58 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 94.57 | |
| KOG3170|consensus | 240 | 94.54 | ||
| cd03067 | 112 | PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin | 94.53 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.38 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 94.31 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 94.26 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 94.24 | |
| KOG2603|consensus | 331 | 94.2 | ||
| PRK10638 | 83 | glutaredoxin 3; Provisional | 94.13 | |
| PF13743 | 176 | Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C. | 94.13 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 94.12 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 94.07 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 93.94 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 93.91 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 93.87 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 93.85 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 93.84 | |
| KOG3171|consensus | 273 | 93.15 | ||
| KOG1752|consensus | 104 | 93.05 | ||
| PRK10824 | 115 | glutaredoxin-4; Provisional | 93.03 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 93.01 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 92.42 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 92.27 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 91.64 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 90.76 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 90.69 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 89.35 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 88.92 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 88.9 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 88.24 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 88.15 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 87.87 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 87.63 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 87.12 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 86.13 | |
| KOG1752|consensus | 104 | 85.97 | ||
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 83.78 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 82.03 | |
| cd02974 | 94 | AhpF_NTD_N Alkyl hydroperoxide reductase F subunit | 81.75 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 80.95 | |
| cd02974 | 94 | AhpF_NTD_N Alkyl hydroperoxide reductase F subunit | 80.44 |
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=304.91 Aligned_cols=281 Identities=17% Similarity=0.378 Sum_probs=224.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhccc--CCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc-eeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQY--GIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV-PLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~-~~~y~G~~~~~~~i~ 74 (346)
|.||||||+||++++|+|+++|+.|... .|.++++| +.++|++|+|++||||.+|++|. +..|.|.+.. ++|+
T Consensus 47 VeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~a-dgIv 125 (493)
T KOG0190|consen 47 VEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREA-DGIV 125 (493)
T ss_pred EEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccH-HHHH
Confidence 6899999999999999999999999655 68999987 57999999999999999999998 5899999888 6999
Q ss_pred HHHhccCCccccCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhC
Q psy160 75 TWLTSQDVFEIKNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWG 153 (346)
Q Consensus 75 ~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~ 153 (346)
.|+.++..| .+..+. .+.++.++...+.++|-|+..--+.- ..+-.+|..+.. ++.|+..+..+++.+++
T Consensus 126 ~wl~kq~gP----a~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~----~~~~~~a~~l~~-d~~F~~ts~~~~~~~~~ 196 (493)
T KOG0190|consen 126 KWLKKQSGP----ASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA----ESFFDAASKLRD-DYKFAHTSDSDVAKKLE 196 (493)
T ss_pred HHHHhccCC----CceecccHHHHHhhccCCceEEEEEecccccch----HHHHHHHHhccc-cceeeccCcHhHHhhcc
Confidence 999999999 888886 68888888887777777776543332 233344444432 37888777889999888
Q ss_pred CC--CcceEEEEecCC--cceecCCcchhHHHHHHHhhcc----------------------------------------
Q psy160 154 VT--KLPAVVYFRHRF--PSIYRGDLSEEEEVLQWLITQK---------------------------------------- 189 (346)
Q Consensus 154 i~--~~Ptl~~~~~g~--~~~y~g~~~~~~~i~~fi~~~~---------------------------------------- 189 (346)
.. +.|-+.+++... ...|+|....+ .|.+|+..+.
T Consensus 197 ~~~~~~~~i~l~kk~d~~~~~~~~~~~~~-~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 275 (493)
T KOG0190|consen 197 LNTEGTFPIVLFKKFDELLVKYDGSFTPE-LLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRK 275 (493)
T ss_pred CCCCCcceEEeccccccchhhcccccCHH-HHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHH
Confidence 75 355677777643 45578888855 6888998621
Q ss_pred --------------------------------------------------------------------------------
Q psy160 190 -------------------------------------------------------------------------------- 189 (346)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T Consensus 276 ~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~k 355 (493)
T KOG0190|consen 276 KFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLK 355 (493)
T ss_pred HHHHHHHhcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccc
Confidence
Q ss_pred --------ccCcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE--cChhhhhhC
Q psy160 190 --------TEDRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI--QDPQLAKRY 257 (346)
Q Consensus 190 --------~~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i--~~~~~~~~~ 257 (346)
..+.|..+.+++|+++ +++++.+||.||||||+||+++.|.|++||+.+++. ++.++++ ...++ ..+
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-~~~ 434 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-PSL 434 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-ccc
Confidence 0146889999999996 678999999999999999999999999999999864 5999999 23333 345
Q ss_pred CCccccEEEEEeCCe---EEEeecCccccccchhhhhhhccC
Q psy160 258 SIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~ 296 (346)
.+.+||||++|+.|. ++.|+|+|+.+. +..|+....
T Consensus 435 ~~~~fPTI~~~pag~k~~pv~y~g~R~le~---~~~fi~~~a 473 (493)
T KOG0190|consen 435 KVDGFPTILFFPAGHKSNPVIYNGDRTLED---LKKFIKKSA 473 (493)
T ss_pred cccccceEEEecCCCCCCCcccCCCcchHH---HHhhhccCC
Confidence 788899999999774 899999997544 666666554
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=275.02 Aligned_cols=289 Identities=15% Similarity=0.312 Sum_probs=216.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc--cCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ--YGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
|+||||||+||+++.|+|.++++.+.. .++.++.+| +.++|.+|+|++|||+++|++|.+..|.|.++. +++.+
T Consensus 54 v~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~-~~l~~ 132 (477)
T PTZ00102 54 VKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTA-DGIVS 132 (477)
T ss_pred EEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCH-HHHHH
Confidence 689999999999999999999998843 347787765 689999999999999999999988899998776 58999
Q ss_pred HHhccCCcccc---------------------------------------------------------------------
Q psy160 76 WLTSQDVFEIK--------------------------------------------------------------------- 86 (346)
Q Consensus 76 ~i~~~~~p~~~--------------------------------------------------------------------- 86 (346)
|+.+...|...
T Consensus 133 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~ 212 (477)
T PTZ00102 133 WIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVE 212 (477)
T ss_pred HHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcc
Confidence 99876554100
Q ss_pred -------------------CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---
Q psy160 87 -------------------NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--- 144 (346)
Q Consensus 87 -------------------~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--- 144 (346)
..+.+++.+++..++.+.... +.|. ..+.....+.+.++++|+.+++. +.|+.+|
T Consensus 213 ~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~ 289 (477)
T PTZ00102 213 LFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFC-GTTEDYDKYKSVVRKVARKLREK-YAFVWLDTEQ 289 (477)
T ss_pred cCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEe-cCHHHHHHHHHHHHHHHHhccCc-eEEEEEechh
Confidence 011222333333333333332 2222 24566678899999999999654 6777776
Q ss_pred Chh-hHHhhCCCCcceEEEEecCCcceecCC----cchhHHHHHHHhhccc----------------cCcEEEccHHHHH
Q psy160 145 DPR-YARKWGVTKLPAVVYFRHRFPSIYRGD----LSEEEEVLQWLITQKT----------------EDRIELITRVMLE 203 (346)
Q Consensus 145 ~~~-l~~~~~i~~~Ptl~~~~~g~~~~y~g~----~~~~~~i~~fi~~~~~----------------~~~v~~l~~~~~~ 203 (346)
.+. ++..+|+..+|++++...+..+.+.+. ++ .++|.+|+.+... ...+..+++++|+
T Consensus 290 ~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~-~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~ 368 (477)
T PTZ00102 290 FGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDS-VEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFE 368 (477)
T ss_pred cchhHHHhcCcccCceEEEEcCCcccCCCccccccCC-HHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchH
Confidence 332 788999999999988874434445443 34 5589999986331 2357788999999
Q ss_pred HH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE---cChhhhhhCCCccccEEEEEeCCe--EEEe
Q psy160 204 TM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN--PLIF 276 (346)
Q Consensus 204 ~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~--~~~y 276 (346)
+. ++++++++|.|||+||++|+.+.|.|+++|+.+++. .+.++.+ .+...++.++++++||+++|++|+ +..|
T Consensus 369 ~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 369 EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEe
Confidence 86 677889999999999999999999999999988642 4788888 466678999999999999999875 4579
Q ss_pred ecCccccccchhhhhhhccCC
Q psy160 277 EGENKILKGTYIGTYISTKAF 297 (346)
Q Consensus 277 ~g~~~~~~~~~~~~~i~~~~~ 297 (346)
.|.++.+. +..|++....
T Consensus 449 ~G~~~~~~---l~~~i~~~~~ 466 (477)
T PTZ00102 449 EGERTVEG---FKEFVNKHAT 466 (477)
T ss_pred cCcCCHHH---HHHHHHHcCC
Confidence 99886433 6666666543
|
|
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=264.49 Aligned_cols=269 Identities=16% Similarity=0.266 Sum_probs=211.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCC-ceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQ-VPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~-~~~~y~G~~~~~~~i~~~ 76 (346)
|+||+|||+||+++.|+|+++++.++. -+.++.+| +.++|.+|+|++|||+.+|.++ .+..|.|...+ +.+.+|
T Consensus 52 v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~-~~~~~~ 129 (383)
T KOG0191|consen 52 VEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNA-ESLAEF 129 (383)
T ss_pred EEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccH-HHHHHH
Confidence 689999999999999999999999854 34555555 7899999999999999999998 78899996666 589999
Q ss_pred HhccCCc---cccCc-eeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---Chh
Q psy160 77 LTSQDVF---EIKNE-IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPR 147 (346)
Q Consensus 77 i~~~~~p---~~~~~-v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~ 147 (346)
+.....+ ..... +.+++..+++..... +..|+|.||+|||+||+.+.|+|+++++.+. +..+.++.++ ...
T Consensus 130 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~ 209 (383)
T KOG0191|consen 130 LIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS 209 (383)
T ss_pred HHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH
Confidence 8776554 22334 888999999887644 5789999999999999999999999999885 3558888777 678
Q ss_pred hHHhhCCCCcceEEEEecCCc--ceecCCcchhHHHHHHHhhccccC----cEEEccH-----------HHHHHHHhccc
Q psy160 148 YARKWGVTKLPAVVYFRHRFP--SIYRGDLSEEEEVLQWLITQKTED----RIELITR-----------VMLETMVEETQ 210 (346)
Q Consensus 148 l~~~~~i~~~Ptl~~~~~g~~--~~y~g~~~~~~~i~~fi~~~~~~~----~v~~l~~-----------~~~~~~~~~~~ 210 (346)
+|++++|++|||+.+|++|.. ..|.|.++. +.+++|+.+...+. .+..... +++-.......
T Consensus 210 ~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~-~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 288 (383)
T KOG0191|consen 210 LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS-DSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKK 288 (383)
T ss_pred HhhhhcccCCceEEEecCCCcccccccccccH-HHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhh
Confidence 999999999999999998775 556777774 49999999865431 1111111 11111222445
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhh-cCc-CceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDE-CDI-YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~-~~~-~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
.+++.|+++||++|....|.++..+.. ... ..+.+.++ ....+|.+..++.+|++.+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 289 NKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred hhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 789999999999999999999999988 111 14666666 344488999999999999998875
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=259.19 Aligned_cols=289 Identities=18% Similarity=0.341 Sum_probs=214.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccC--CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCce--eeecCCCCCHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYG--IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVP--LLYDGDLFDEEKI 73 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~--i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~--~~y~G~~~~~~~i 73 (346)
|.||||||++|+++.|.+.++++.+...+ +.++.+| +.++|.+|+|.++||+++|++|.. ..|.|.++. +++
T Consensus 23 v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~-~~l 101 (462)
T TIGR01130 23 VEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDA-DGI 101 (462)
T ss_pred EEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCH-HHH
Confidence 68999999999999999999999885444 7777765 578999999999999999999875 789998877 589
Q ss_pred HHHHhccCCccccCceeecC-H----------------------------------------------------------
Q psy160 74 LTWLTSQDVFEIKNEIEEVN-R---------------------------------------------------------- 94 (346)
Q Consensus 74 ~~~i~~~~~p~~~~~v~~l~-~---------------------------------------------------------- 94 (346)
.+|+.+...| .+.+++ .
T Consensus 102 ~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (462)
T TIGR01130 102 VKYMKKQSGP----AVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF 177 (462)
T ss_pred HHHHHHhcCC----CceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCC
Confidence 9999776544 122221 1
Q ss_pred ---------------------------HHHHHHHhcC-------------------CcEEEEEE--CCCChhHHHHHHHH
Q psy160 95 ---------------------------RMLDKLLEEN-------------------EFVTVFFY--ETDHKDSVKVLERL 126 (346)
Q Consensus 95 ---------------------------~~~~~~~~~~-------------------~~~lv~F~--~~~C~~c~~~~~~~ 126 (346)
+++..++..+ ++.+++|+ ......|..+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (462)
T TIGR01130 178 PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRF 257 (462)
T ss_pred CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHH
Confidence 2222233211 13333333 23444568888899
Q ss_pred HHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEecC--CcceecC-CcchhHHHHHHHhhccc--------
Q psy160 127 EKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRHR--FPSIYRG-DLSEEEEVLQWLITQKT-------- 190 (346)
Q Consensus 127 ~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~g--~~~~y~g-~~~~~~~i~~fi~~~~~-------- 190 (346)
+++|+.+.+..+.|+.+| .+.+++.+|+. .+|+++++... ..+.+.+ ..+ .+.|.+|+.+...
T Consensus 258 ~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~-~~~i~~fi~~~~~g~~~~~~~ 336 (462)
T TIGR01130 258 LEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFS-SENLEAFVKDFLDGKLKPYLK 336 (462)
T ss_pred HHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCC-HHHHHHHHHHHhcCCCCeeec
Confidence 999988864347777766 56899999998 69999999753 2345555 455 4589999987431
Q ss_pred --------cCcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-C-ceEEEEE--cChhhhhhC
Q psy160 191 --------EDRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-Y-GIHMVKI--QDPQLAKRY 257 (346)
Q Consensus 191 --------~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~-~i~~~~i--~~~~~~~~~ 257 (346)
...+..++.++|++++ +.+++++|.||++||++|+.+.|.++++++.+++ . .+.++++ +..++.. +
T Consensus 337 se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~ 415 (462)
T TIGR01130 337 SEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-F 415 (462)
T ss_pred cCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-C
Confidence 2367788999999964 5688999999999999999999999999999985 2 5888988 3445555 9
Q ss_pred CCccccEEEEEeCCe---EEEeecCccccccchhhhhhhccCCCC
Q psy160 258 SIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTKAFSL 299 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~~~~ 299 (346)
+|+++|++++|++|. +..|.|.++.+. +..|+.......
T Consensus 416 ~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~---l~~~l~~~~~~~ 457 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKSEPVPYDGDRTLED---FSKFIAKHATFP 457 (462)
T ss_pred CccccCEEEEEeCCCCcCceEecCcCCHHH---HHHHHHhcCCCC
Confidence 999999999999884 468999876333 566666554433
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=221.50 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=190.8
Q ss_pred HHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHH
Q psy160 76 WLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYAR 150 (346)
Q Consensus 76 ~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~ 150 (346)
++.....|.....|..|+.+||+.++..++.++|.||||||+||+++.|+|+++|+.+... .+..+++| +.++|.
T Consensus 14 ~~~~a~~~~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~ 93 (493)
T KOG0190|consen 14 SSEAASVPKAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLAS 93 (493)
T ss_pred hhhhhhcCCcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHh
Confidence 3333333345679999999999999999999999999999999999999999999999654 68899988 788999
Q ss_pred hhCCCCcceEEEEecCC-cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHH
Q psy160 151 KWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILE 229 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~ 229 (346)
+|+|++|||+.+|++|+ +..|+|.+..+ +|+.|+.++..|.....-+.+.+..++..+..++|.|+..--+. . .
T Consensus 94 ~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad-gIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~--~--~ 168 (493)
T KOG0190|consen 94 KYEVRGYPTLKIFRNGRSAQDYNGPREAD-GIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESL--A--E 168 (493)
T ss_pred hhcCCCCCeEEEEecCCcceeccCcccHH-HHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccc--h--H
Confidence 99999999999999999 58999999955 99999999999988777778888888888788888888764432 1 4
Q ss_pred HHHHHHhhcCcCceEEEEEcChhhhhhCCCc--cccEEEEEeCCe--EEEeecCccccccchhhhhhhccCCCCCCcccC
Q psy160 230 GLEKVDDECDIYGIHMVKIQDPQLAKRYSIK--TFPALVYFRNGN--PLIFEGENKILKGTYIGTYISTKAFSLIPFCFS 305 (346)
Q Consensus 230 ~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~--~~Pti~~~~~g~--~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 305 (346)
.+..+|..+.+ ++.|+..++.+++++++.. +.|-+++++... ...|.|..+.+. +..|++.++.|++.+.|.
T Consensus 169 ~~~~~a~~l~~-d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~---l~~Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 169 SFFDAASKLRD-DYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPEL---LKKFIQENSLPLVTEFTV 244 (493)
T ss_pred HHHHHHHhccc-cceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHH---HHHHHHHhcccccceecc
Confidence 55556666664 7888866899999999874 356688887653 456778876443 899999999999999999
Q ss_pred CCCCCccch
Q psy160 306 EKHPGAFQT 314 (346)
Q Consensus 306 ~~~~~~~~~ 314 (346)
++...++++
T Consensus 245 ~~~~~~~~~ 253 (493)
T KOG0190|consen 245 ANNAKIYSS 253 (493)
T ss_pred cccceeecc
Confidence 998888877
|
|
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=214.76 Aligned_cols=204 Identities=20% Similarity=0.333 Sum_probs=165.4
Q ss_pred eeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
...++ .......+..+..++|+||+|||+||+++.|+|.+++..+++ .+.++.+| +..+|++|+|+++||+.+|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 33344 444455566778999999999999999999999999999977 47778777 88999999999999999999
Q ss_pred cC-CcceecCCcchhHHHHHHHhhcccc------Cc-EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHH
Q psy160 165 HR-FPSIYRGDLSEEEEVLQWLITQKTE------DR-IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVD 235 (346)
Q Consensus 165 ~g-~~~~y~g~~~~~~~i~~fi~~~~~~------~~-v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la 235 (346)
+| .++.|.|..+.+ .+.+|+.....+ .. +..++..+++.. .+.+..|+|.||+|||++|+.+.|.|++++
T Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a 188 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAE-SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLA 188 (383)
T ss_pred CCCceeeccCcccHH-HHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHH
Confidence 98 588899988754 899999876542 34 778888888885 566789999999999999999999999999
Q ss_pred hhcCc-CceEEEEEc---ChhhhhhCCCccccEEEEEeCCeE--EEeecCccccccchhhhhhhccCC
Q psy160 236 DECDI-YGIHMVKIQ---DPQLAKRYSIKTFPALVYFRNGNP--LIFEGENKILKGTYIGTYISTKAF 297 (346)
Q Consensus 236 ~~~~~-~~i~~~~i~---~~~~~~~~~i~~~Pti~~~~~g~~--~~y~g~~~~~~~~~~~~~i~~~~~ 297 (346)
..++. ..+.++.++ ...++++++|.++||+.+|++|.. ..|.|.|+.+. +..|+.....
T Consensus 189 ~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~---i~~~v~~~~~ 253 (383)
T KOG0191|consen 189 KLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDS---IVSFVEKKER 253 (383)
T ss_pred HHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHH---HHHHHHhhcC
Confidence 98863 368888874 678999999999999999998865 45666675333 5555555443
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=188.62 Aligned_cols=179 Identities=18% Similarity=0.276 Sum_probs=139.9
Q ss_pred CeecC---CCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee--eecCCCCCHHH
Q psy160 1 MYIND---ENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDEEK 72 (346)
Q Consensus 1 v~Fy~---~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~--~y~G~~~~~~~ 72 (346)
+.|++ +||++|+.+.|.++++++.++...+.++++| +++++.+|+|.++||+++|++|... .|.|.... +.
T Consensus 24 ~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~-~~ 102 (215)
T TIGR02187 24 VVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAG-YE 102 (215)
T ss_pred EEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCH-HH
Confidence 36888 9999999999999999998865456677775 6899999999999999999998764 58896665 47
Q ss_pred HHHHHhccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Chhh
Q psy160 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRY 148 (346)
Q Consensus 73 i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l 148 (346)
+.+|+.....- ......++++..+.+...++++ ++.|+++||++|+.+.+.+++++.... ++.+..+| ++.+
T Consensus 103 l~~~i~~~~~~--~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~~~~ 178 (215)
T TIGR02187 103 FAALIEDIVRV--SQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANENPDL 178 (215)
T ss_pred HHHHHHHHHHh--cCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCCHHH
Confidence 77777654322 1134567777677665545554 555999999999999999999987743 36665555 7889
Q ss_pred HHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 149 ARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+++|+|.++||++++.+|. .+.|... .+++.+|+.+
T Consensus 179 ~~~~~V~~vPtl~i~~~~~--~~~G~~~-~~~l~~~l~~ 214 (215)
T TIGR02187 179 AEKYGVMSVPKIVINKGVE--EFVGAYP-EEQFLEYILS 214 (215)
T ss_pred HHHhCCccCCEEEEecCCE--EEECCCC-HHHHHHHHHh
Confidence 9999999999999997765 3888777 4489998865
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=185.59 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=136.3
Q ss_pred CCcEEEEEEC---CCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcc--eecCCc
Q psy160 104 NEFVTVFFYE---TDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS--IYRGDL 175 (346)
Q Consensus 104 ~~~~lv~F~~---~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~--~y~g~~ 175 (346)
+...++.|++ +||++|+.+.|.++++++.+.+..+.++++| .++++++|+|.++||+++|++|+.. +|.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3455777888 9999999999999999998865557788876 7899999999999999999998853 688977
Q ss_pred chhHHHHHHHhhccc-cCcEEEccHHHHHHHHhccceEE-EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC
Q psy160 176 SEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQYLA-VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD 250 (346)
Q Consensus 176 ~~~~~i~~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~~l-v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~ 250 (346)
+.. ++.+|+..... ......++.+..+.+.+.++++. +.|+++||++|+.+.+.+++++.... .+.+..+ .+
T Consensus 99 ~~~-~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~ 175 (215)
T TIGR02187 99 AGY-EFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN 175 (215)
T ss_pred CHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC
Confidence 744 78888776532 11334566666666555455544 44999999999999999999998743 5777666 67
Q ss_pred hhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 251 PQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 251 ~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++++++|+|.++||++++++|+. +.|...
T Consensus 176 ~~~~~~~~V~~vPtl~i~~~~~~--~~G~~~ 204 (215)
T TIGR02187 176 PDLAEKYGVMSVPKIVINKGVEE--FVGAYP 204 (215)
T ss_pred HHHHHHhCCccCCEEEEecCCEE--EECCCC
Confidence 89999999999999999988863 778665
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >KOG4277|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-23 Score=175.10 Aligned_cols=260 Identities=16% Similarity=0.266 Sum_probs=191.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccC--CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYG--IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~--i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
|.||||||+||+++.|.|.++--++++.| |.+.++| -+.++++++|++|||+.+|+++....|.|++.. ++|++
T Consensus 48 VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K-d~iie 126 (468)
T KOG4277|consen 48 VDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK-DAIIE 126 (468)
T ss_pred EEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH-HHHHH
Confidence 68999999999999999999999997665 6777776 479999999999999999999999999999887 69999
Q ss_pred HHhccCCccccCceeecCH--HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CChhhHH-
Q psy160 76 WLTSQDVFEIKNEIEEVNR--RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--ADPRYAR- 150 (346)
Q Consensus 76 ~i~~~~~p~~~~~v~~l~~--~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~~~l~~- 150 (346)
|...-..| .+..+++ ..|+.+-..+.+.+|+|.+...+ +...+..+|... +.+++. ....++-
T Consensus 127 FAhR~a~a----iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fidAASe~----~~~a~FfSaseeVaPe 194 (468)
T KOG4277|consen 127 FAHRCAAA----IIEPINENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFIDAASEK----FSVARFFSASEEVAPE 194 (468)
T ss_pred HHHhcccc----eeeecChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHHHHhhhh----eeeeeeeccccccCCc
Confidence 99998887 7777775 45566656678889999875544 445566666552 322221 1223333
Q ss_pred hhCCCCcceEEEEecCC-cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcC-----CChhh
Q psy160 151 KWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-----NCNIC 224 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~-----~c~~c 224 (346)
.-..+..|.+.+|++.. .+..+|.. + .+.+|+++..-|..+ ..++..+.++-.+.+.+.+..-.. ...+.
T Consensus 195 ~~~~kempaV~VFKDetf~i~de~dd--~-dLseWinRERf~~fL-a~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh 270 (468)
T KOG4277|consen 195 ENDAKEMPAVAVFKDETFEIEDEGDD--E-DLSEWINRERFPGFL-AADGFLLAEIGASGKLVALAVIDEKHKFNNSSEH 270 (468)
T ss_pred ccchhhccceEEEccceeEEEecCch--h-HHHHHHhHhhccchh-hcccchHHHhCcCCceEEEEEeccccccCCcchh
Confidence 23356779999998875 33345543 3 899999998877544 556667777766777766655432 34556
Q ss_pred HHHHHHHHHHHhhcCcC-----ceEEEEEcChhhhhhCCC--ccccEEEEEeCCeEEEee
Q psy160 225 DQILEGLEKVDDECDIY-----GIHMVKIQDPQLAKRYSI--KTFPALVYFRNGNPLIFE 277 (346)
Q Consensus 225 ~~~~~~~~~la~~~~~~-----~i~~~~i~~~~~~~~~~i--~~~Pti~~~~~g~~~~y~ 277 (346)
..+..+.+++|+.+++. +++|+.++..+++...-+ -+.|++++|.-.+...|-
T Consensus 271 ~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~als~P~l~i~NtsnqeYfL 330 (468)
T KOG4277|consen 271 REFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMAALSEPHLFIFNTSNQEYFL 330 (468)
T ss_pred HHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHHhhcCCeEEEEecCchheee
Confidence 78899999999988532 588999977777766533 357999999866544443
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=186.85 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=174.3
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.|.+++.++|++++.+++.++|.||||||++|+++.|.|.++++.+.+. ++.++.+| +..+|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 5788999999999999999999999999999999999999999988543 48888876 678999999999999999
Q ss_pred EecCCc--ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc
Q psy160 163 FRHRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 240 (346)
Q Consensus 163 ~~~g~~--~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~ 240 (346)
|++|.. ..|.|.++.. +|.+|+.+...+.....-+.++++.++..+...+|.|+..- -......+.++|..+..
T Consensus 82 ~~~g~~~~~~~~g~~~~~-~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~---~~~~~~~~~~~a~~~~~ 157 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDAD-GIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDL---DSELNDTFLSVAEKLRD 157 (462)
T ss_pred EeCCccceeEecCCCCHH-HHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCC---CcHHHHHHHHHHHHhhh
Confidence 999885 7899999855 89999999988766555568999998888888888887642 23677889999999875
Q ss_pred CceE-EEEEcChhhhhhCCCccccEEEEEeCC-e---EEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccch
Q psy160 241 YGIH-MVKIQDPQLAKRYSIKTFPALVYFRNG-N---PLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQT 314 (346)
Q Consensus 241 ~~i~-~~~i~~~~~~~~~~i~~~Pti~~~~~g-~---~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
... ++...+..+.+.+++. -|++++|+.. . ...|.|....+. ..|..|+.....|.+++++.++...++..
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~fi~~~~~p~v~~~~~~~~~~~~~~ 233 (462)
T TIGR01130 158 -VYFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDV-SDLEKFIRAESLPLVGEFTQETAAKYFES 233 (462)
T ss_pred -ccceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCH-HHHHHHHHHcCCCceEeeCCcchhhHhCC
Confidence 333 4444666777888765 3666666532 1 235777664322 23888999999999999999876655543
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG4277|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-22 Score=169.81 Aligned_cols=212 Identities=16% Similarity=0.262 Sum_probs=148.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
+..|..|+++-.+. +....|+|.||||||+||+++.|.|.++.-.++.. .|.+++.| .+.++.++||++||||
T Consensus 27 pt~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 27 PTAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred chhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 34555555443221 34578999999999999999999999999998554 47778776 7899999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccH--HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhc
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITR--VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDEC 238 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~--~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~ 238 (346)
.+|+++..+.|.|.+.++ +|++|..+-..+ .+..++. ..+..+.+.+++.+|.|.+.- + .+...+.++|...
T Consensus 105 k~~kgd~a~dYRG~R~Kd-~iieFAhR~a~a-iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge-~---PL~d~fidAASe~ 178 (468)
T KOG4277|consen 105 KFFKGDHAIDYRGGREKD-AIIEFAHRCAAA-IIEPINENQIEFEHLQARHQPFFVFFGTGE-G---PLFDAFIDAASEK 178 (468)
T ss_pred EEecCCeeeecCCCccHH-HHHHHHHhcccc-eeeecChhHHHHHHHhhccCceEEEEeCCC-C---cHHHHHHHHhhhh
Confidence 999999999999999965 999999998766 5555654 455556778899999887533 3 2345556665542
Q ss_pred CcCceEEEEEcChhhhhhCCCccccEEEEEeCCeEEEe-ecCccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 239 DIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIF-EGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 239 ~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~~~~y-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
-. -..|...++.-....-..+..|.+.+|++.....| +|.. ..+..|++++++|.+-..+.-...++
T Consensus 179 ~~-~a~FfSaseeVaPe~~~~kempaV~VFKDetf~i~de~dd-----~dLseWinRERf~~fLa~dgflL~Ei 246 (468)
T KOG4277|consen 179 FS-VARFFSASEEVAPEENDAKEMPAVAVFKDETFEIEDEGDD-----EDLSEWINRERFPGFLAADGFLLAEI 246 (468)
T ss_pred ee-eeeeeccccccCCcccchhhccceEEEccceeEEEecCch-----hHHHHHHhHhhccchhhcccchHHHh
Confidence 11 23333322222222233456799999999875444 4442 22888999999886655555443333
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=179.34 Aligned_cols=213 Identities=15% Similarity=0.224 Sum_probs=162.6
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
++.+..++.++|++++.+++.++|.||+|||++|+++.|.|.++++.+.. .++.++.+| +..+|++|+|+++||+
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 45789999999999999999999999999999999999999999988843 358888876 7899999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 240 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~ 240 (346)
++|++|....|.|.++.+ +|.+|+.+...|.....-+.+......+....+++.++.. ....+...+.++|..+++
T Consensus 111 ~~~~~g~~~~y~g~~~~~-~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~a~~~~~ 186 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTAD-GIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTS---KDSELYKKFEEVADKHRE 186 (477)
T ss_pred EEEECCceEEecCCCCHH-HHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEecc---CCcHHHHHHHHHHHhccc
Confidence 999999877999999855 9999999998886554444555554444555555555543 234677888999999876
Q ss_pred CceEEEEEcChhhhhhCCCccccEEEEEeCC-eEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccchh
Q psy160 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFRNG-NPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQTE 315 (346)
Q Consensus 241 ~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g-~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
...|+.+.+. ..|.+.+++.. ....+.++.+ . .-+..|++....|.+.+++.++...++.++
T Consensus 187 -~~~F~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~ 249 (477)
T PTZ00102 187 -HAKFFVKKHE---------GKNKIYVLHKDEEGVELFMGKT--K-EELEEFVSTESFPLFAEINAENYRRYISSG 249 (477)
T ss_pred -cceEEEEcCC---------CCCcEEEEecCCCCcccCCCCC--H-HHHHHHHHHcCCCceeecCccchHHHhcCC
Confidence 5666654222 23667777653 3333333332 2 227889999999999999999877666543
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-20 Score=140.47 Aligned_cols=97 Identities=13% Similarity=0.262 Sum_probs=85.1
Q ss_pred CceeecCHHHHHHH---HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhH-HhhCCCCcce
Q psy160 87 NEIEEVNRRMLDKL---LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA-RKWGVTKLPA 159 (346)
Q Consensus 87 ~~v~~l~~~~~~~~---~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~-~~~~i~~~Pt 159 (346)
..|.++++++|++. +.+++.++|.||||||++|+.+.|.|+++|+.+++. +.++++| +.++| ++|+|+++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCE
Confidence 47999999999987 567789999999999999999999999999998653 7778776 66799 5899999999
Q ss_pred EEEEecCC-cceecCCcchhHHHHHHH
Q psy160 160 VVYFRHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+++|++|+ +..|.|.++.+ .|+.|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~-~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP-YMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHH-HHHhhC
Confidence 99999987 77899999865 888874
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >KOG0912|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=153.54 Aligned_cols=220 Identities=19% Similarity=0.194 Sum_probs=156.7
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc----CCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD----NMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~----~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
++.+|++.++.++..++|.|||.||+.++.+.|.|+++|..++ ..++.++++| +..++.+|.|+.|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4678899999999999999999999999999999999999882 2358888887 77899999999999999999
Q ss_pred cCCc--ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC
Q psy160 165 HRFP--SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY 241 (346)
Q Consensus 165 ~g~~--~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~ 241 (346)
+|.. ..|.|.++.+ ++.+|++.+.+.+.-.-.+..+++.+.. +++.++..|-....+. ...+.++|..+++
T Consensus 81 nG~~~~rEYRg~RsVe-aL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspe----y~~~~kva~~lr~- 154 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVE-ALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPE----YDNLRKVASLLRD- 154 (375)
T ss_pred ccchhhhhhccchhHH-HHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCch----HHHHHHHHHHHhh-
Confidence 9993 3699999955 9999999998764222223344444433 4555655565455443 4577788888875
Q ss_pred ceEEEEEcChhhhhhCCCccccEEEEEeCCeE---EEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccchhhHH
Q psy160 242 GIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP---LIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQTELVL 318 (346)
Q Consensus 242 ~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~~---~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (346)
+..|.-- -.++.....-.+.+ +++|+++.. ..|.|.+++-+ .+..||+....|++.|+|-+|..++ +.
T Consensus 155 dc~f~V~-~gD~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~--el~~Wi~dKcvpLVREiTFeN~EEL-----tE 225 (375)
T KOG0912|consen 155 DCVFLVG-FGDLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFD--ELKQWIQDKCVPLVREITFENAEEL-----TE 225 (375)
T ss_pred ccEEEee-ccccccCCCCCCCc-eEEeCCCcCCcCcccccccccHH--HHHHHHHhcchhhhhhhhhccHHHH-----hh
Confidence 5444321 11222222222333 455555432 25999988533 3889999999999999999985544 44
Q ss_pred hhcceeEE
Q psy160 319 RSLKIKII 326 (346)
Q Consensus 319 ~~~~~~~~ 326 (346)
.++|..|.
T Consensus 226 EGlPflIL 233 (375)
T KOG0912|consen 226 EGLPFLIL 233 (375)
T ss_pred cCCceEEE
Confidence 45555543
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=133.60 Aligned_cols=96 Identities=24% Similarity=0.381 Sum_probs=85.0
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++.+.++++++|.||+|||++|+.+.|.|+++++.+++. +.|+.+| ++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 5788999999999988899999999999999999999999999998654 7777766 77899999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHH
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+|+ ...|.|.++.+ +|.+|.
T Consensus 81 ~g~~~~~~~G~~~~~-~l~~f~ 101 (101)
T cd03003 81 SGMNPEKYYGDRSKE-SLVKFA 101 (101)
T ss_pred CCCCcccCCCCCCHH-HHHhhC
Confidence 987 56799998855 888773
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=132.61 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=84.6
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-----CCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-----MDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-----~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.|.+++.++|++.+.++++++|.||+|||++|+++.|.|+++++.+++ ..+.++.+| ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998889999999999999999999999999987632 137777765 789999999999999
Q ss_pred EEEEecCC--cceecCCcchhHHHHHHH
Q psy160 160 VVYFRHRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~--~~~y~g~~~~~~~i~~fi 185 (346)
+++|++|+ ...|.|.++.+ +|.+|+
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~-~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVE-ALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHH-HHHhhC
Confidence 99999998 36799988855 899885
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=131.01 Aligned_cols=95 Identities=11% Similarity=0.235 Sum_probs=83.3
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEEC--CCCh---hHHHHHHHHHHHHhhccCCCcEEEEeC--------ChhhHHhhCC
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYE--TDHK---DSVKVLERLEKIDGETDNMDITFVKMA--------DPRYARKWGV 154 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~--~~C~---~c~~~~~~~~~~a~~~~~~~i~~~~~~--------~~~l~~~~~i 154 (346)
.+.+|+++||++.+.+++.+||.||| |||+ ||+++.|++.+++.. +.++.+| +.+||++|+|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCC
Confidence 46789999999999999999999999 9999 999999999988864 6666665 3789999999
Q ss_pred C--CcceEEEEecCC---cceecCC-cchhHHHHHHHhhc
Q psy160 155 T--KLPAVVYFRHRF---PSIYRGD-LSEEEEVLQWLITQ 188 (346)
Q Consensus 155 ~--~~Ptl~~~~~g~---~~~y~g~-~~~~~~i~~fi~~~ 188 (346)
+ +||||++|++|. +..|+|. ++.+ +|++|++++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~-~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVD-ALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHH-HHHHHHHhc
Confidence 9 999999999884 6789996 8855 999999875
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=129.82 Aligned_cols=98 Identities=20% Similarity=0.462 Sum_probs=88.1
Q ss_pred eeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.+|++|+|+++||+++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 568899999999987 79999999999999999999999999999876 68888877 77899999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHhhc
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+ ...|.|.++.+ +|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~~-~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAE-SLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHH-HHHHHHHHH
T ss_pred CCcEEEEEECCCCHH-HHHHHHHcC
Confidence 998 44799998844 999999864
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=131.55 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=80.4
Q ss_pred CcEEEccHHHHHHH---HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh-hhCCCccccE
Q psy160 192 DRIELITRVMLETM---VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA-KRYSIKTFPA 264 (346)
Q Consensus 192 ~~v~~l~~~~~~~~---~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~-~~~~i~~~Pt 264 (346)
+.|..++.++|+++ ++++++++|.||||||++|+.+.|.++++|+.+++ .+.|+++ .+.++| ++|+|.++||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCE
Confidence 46779999999986 57889999999999999999999999999999986 6889999 467788 5899999999
Q ss_pred EEEEeCCe-EEEeecCcccc
Q psy160 265 LVYFRNGN-PLIFEGENKIL 283 (346)
Q Consensus 265 i~~~~~g~-~~~y~g~~~~~ 283 (346)
+++|++|+ +..|.|.++.+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~ 107 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAP 107 (113)
T ss_pred EEEEECCccceEEeCCCCHH
Confidence 99999986 67899998743
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=129.16 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=84.2
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.|.+++.++|++.++. .++|.||++||++|+.+.|.|+++++.+...++.++.+| ++.+|++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 5788999999998743 389999999999999999999999998765567778776 67899999999999999999
Q ss_pred cCCcceecCCcchhHHHHHHHhh
Q psy160 165 HRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+|+...|.|.++.+ +|.+|+++
T Consensus 80 ~g~~~~~~G~~~~~-~l~~~i~~ 101 (101)
T cd02994 80 DGVFRRYQGPRDKE-DLISFIEE 101 (101)
T ss_pred CCCEEEecCCCCHH-HHHHHHhC
Confidence 99877899998854 89999864
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >KOG0912|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=144.12 Aligned_cols=224 Identities=17% Similarity=0.183 Sum_probs=156.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhc----ccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee--eecCCCCCHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDAD----QYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDEE 71 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~----~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~--~y~G~~~~~~ 71 (346)
|.|||+||+-++.+.|.|+++|..+. +..+.++.+| +..++++|.|.+|||+.+|++|.-. .|.|.++. +
T Consensus 18 v~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsV-e 96 (375)
T KOG0912|consen 18 VNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSV-E 96 (375)
T ss_pred eeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhH-H
Confidence 67999999999999999999999882 2347777776 5689999999999999999999643 69999988 4
Q ss_pred HHHHHHhccCCccccCceeecC-HHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhH
Q psy160 72 KILTWLTSQDVFEIKNEIEEVN-RRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149 (346)
Q Consensus 72 ~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~ 149 (346)
++++|+.++..- .+.+.. .+.+..+...+ ..++.+|-....+.-. .++++|..++.. ..|.. -..++.
T Consensus 97 aL~efi~kq~s~----~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~----~~~kva~~lr~d-c~f~V-~~gD~~ 166 (375)
T KOG0912|consen 97 ALIEFIEKQLSD----PINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYD----NLRKVASLLRDD-CVFLV-GFGDLL 166 (375)
T ss_pred HHHHHHHHHhcc----HHHHHHhHHHHHhhhccccceEEEEeccCCCchHH----HHHHHHHHHhhc-cEEEe-eccccc
Confidence 999999998775 566664 35555555433 4555556555655443 455666665332 22221 111122
Q ss_pred HhhCCCCcceEEEEecCCc---ceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHH
Q psy160 150 RKWGVTKLPAVVYFRHRFP---SIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQ 226 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~g~~---~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~ 226 (346)
....-.+.+ +++|+.+.. ..|.|..+.-+.+.+|+.+..-| -|.++|-+|.+++..+..|.+|+|+.+.-...
T Consensus 167 ~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvp-LVREiTFeN~EELtEEGlPflILf~~kdD~~s-- 242 (375)
T KOG0912|consen 167 KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVP-LVREITFENAEELTEEGLPFLILFRKKDDKES-- 242 (375)
T ss_pred cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchh-hhhhhhhccHHHHhhcCCceEEEEecCCcccH--
Confidence 211112222 455554432 25999999888999999999887 77899999999999999999999998754332
Q ss_pred HHHHHHHHHhhcC
Q psy160 227 ILEGLEKVDDECD 239 (346)
Q Consensus 227 ~~~~~~~la~~~~ 239 (346)
....-..+++++.
T Consensus 243 ~k~F~~aI~ReL~ 255 (375)
T KOG0912|consen 243 EKIFKNAIARELD 255 (375)
T ss_pred HHHHHHHHHHHhh
Confidence 2222334566654
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=127.27 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=82.6
Q ss_pred ceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+.+++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+| ++++|++++|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 5778999999998754 57899999999999999999999999999854 37777776 6789999999999999999
Q ss_pred ecC-C-cceecCCcchhHHHHHHH
Q psy160 164 RHR-F-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g-~-~~~y~g~~~~~~~i~~fi 185 (346)
++| + ...|.|..++.++|.+|+
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 987 5 667999876234888875
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >KOG0910|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=130.60 Aligned_cols=98 Identities=20% Similarity=0.362 Sum_probs=83.6
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++ +++++.|++|.|||+||+||+.+.|.+++++..+.+ .+.++++ ++.+++.+|+|+.+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 455778899988 578899999999999999999999999999999987 8999999 78899999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhhc
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|+.. ++-|..+. +.+..+++.
T Consensus 123 knGe~~d~~vG~~~~---~~l~~~i~k 146 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPK---EQLRSLIKK 146 (150)
T ss_pred ECCEEeeeecccCCH---HHHHHHHHH
Confidence 999876 56666643 225555543
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=124.73 Aligned_cols=89 Identities=21% Similarity=0.406 Sum_probs=79.6
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++|++.++++++++|.||++||++|+.+.|.++++|+.+++ .+.|+++ .++.+|++++|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 456889999999888889999999999999999999999999999986 6889888 678999999999999999999
Q ss_pred CCe-EEEeecCccc
Q psy160 270 NGN-PLIFEGENKI 282 (346)
Q Consensus 270 ~g~-~~~y~g~~~~ 282 (346)
+|+ ...|.|.++.
T Consensus 81 ~g~~~~~~~G~~~~ 94 (101)
T cd03003 81 SGMNPEKYYGDRSK 94 (101)
T ss_pred CCCCcccCCCCCCH
Confidence 996 4568888763
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=123.47 Aligned_cols=97 Identities=13% Similarity=0.312 Sum_probs=80.8
Q ss_pred ceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHH-hhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYAR-KWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~-~~~i~~~Pt 159 (346)
.|.+++.++|+.++. ++++++|.||++||++|+++.|.|+++++.+++.++.++.++ ...+|. .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 578999999999984 458999999999999999999999999999875557676654 356786 599999999
Q ss_pred EEEEecCC--cceecCC-cchhHHHHHHH
Q psy160 160 VVYFRHRF--PSIYRGD-LSEEEEVLQWL 185 (346)
Q Consensus 160 l~~~~~g~--~~~y~g~-~~~~~~i~~fi 185 (346)
+++|.+|. +..|.|. ++.+ +|+.|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~-~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVD-SLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHH-HHHhhC
Confidence 99998764 6789995 6644 898885
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=124.41 Aligned_cols=103 Identities=14% Similarity=0.335 Sum_probs=84.1
Q ss_pred ccCceeecCHHHHHHHHhcCC-cEEEEEECCCChh--HH--HHHHHHHHHHhhc-cCCCcEEEEeC---ChhhHHhhCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEENE-FVTVFFYETDHKD--SV--KVLERLEKIDGET-DNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~-~~lv~F~~~~C~~--c~--~~~~~~~~~a~~~-~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
+.+.|.++|++||++.+.+++ ++++.|+++||++ |+ .+.|.+.++|.++ +..++.++++| ++.+|++|||+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 445889999999999887775 5666667777765 99 6777777777765 34458888876 88999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++||+++|++|+.+.|.|.++.+ .|.+|+.+.
T Consensus 87 ~iPTl~lfk~G~~v~~~G~~~~~-~l~~~l~~~ 118 (120)
T cd03065 87 EEDSIYVFKDDEVIEYDGEFAAD-TLVEFLLDL 118 (120)
T ss_pred cccEEEEEECCEEEEeeCCCCHH-HHHHHHHHH
Confidence 99999999999977899999855 899998753
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=123.01 Aligned_cols=90 Identities=21% Similarity=0.409 Sum_probs=78.6
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-----CceEEEEE---cChhhhhhCCCccccE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-----YGIHMVKI---QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-----~~i~~~~i---~~~~~~~~~~i~~~Pt 264 (346)
.+..++.++|++.++++++++|.||+|||++|+.+.|.|+++++.+++ ..+.++.+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 466889999999998899999999999999999999999999988642 14888888 5789999999999999
Q ss_pred EEEEeCCe--EEEeecCccc
Q psy160 265 LVYFRNGN--PLIFEGENKI 282 (346)
Q Consensus 265 i~~~~~g~--~~~y~g~~~~ 282 (346)
+++|++|+ ...|.|.++.
T Consensus 82 l~~~~~g~~~~~~~~g~~~~ 101 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSV 101 (108)
T ss_pred EEEEeCCcCcceecCCCCCH
Confidence 99999997 3678898763
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=120.91 Aligned_cols=95 Identities=22% Similarity=0.405 Sum_probs=80.1
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.|..++.++|++++++. ++|.||++||++|+.+.|.|+++++.+++.++.++.+ .++.++++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 46688999999987543 7899999999999999999999999876546888888 578899999999999999999
Q ss_pred CCeEEEeecCccccccchhhhhh
Q psy160 270 NGNPLIFEGENKILKGTYIGTYI 292 (346)
Q Consensus 270 ~g~~~~y~g~~~~~~~~~~~~~i 292 (346)
+|+...|.|.++.+. +..|+
T Consensus 80 ~g~~~~~~G~~~~~~---l~~~i 99 (101)
T cd02994 80 DGVFRRYQGPRDKED---LISFI 99 (101)
T ss_pred CCCEEEecCCCCHHH---HHHHH
Confidence 998778999876432 44444
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=121.93 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=80.8
Q ss_pred eeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
|.+++.++|++.+.++ ++++|.||++||++|+++.|.|+++++.+.+. +.++.++ +..+|++|+|+++||+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 6789999999988654 56999999999999999999999999998542 5555443 567999999999999999
Q ss_pred EecCC------cceecCCcchhHHHHHHHh
Q psy160 163 FRHRF------PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 163 ~~~g~------~~~y~g~~~~~~~i~~fi~ 186 (346)
|++|. ...|.|.++.+ +|.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~-~l~~fi~ 109 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAK-AIVDFVL 109 (109)
T ss_pred EeCCCcccccccccccCccCHH-HHHHHhC
Confidence 99874 46799998855 8999973
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=135.21 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=87.2
Q ss_pred cCceeecCHHHHHHHHhc-----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCc
Q psy160 86 KNEIEEVNRRMLDKLLEE-----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 157 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~-----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~ 157 (346)
.+.+.++|+++|+++++. .++|+|+||+|||++|+++.|.|+++++.+++. +.++.+| ++.+|++|+|+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcccHHHHHHcCCCcC
Confidence 357999999999998864 378999999999999999999999999998653 7777766 7789999999999
Q ss_pred ceEEEEecCCcceec-CCcchhHHHHHHHhhcc
Q psy160 158 PAVVYFRHRFPSIYR-GDLSEEEEVLQWLITQK 189 (346)
Q Consensus 158 Ptl~~~~~g~~~~y~-g~~~~~~~i~~fi~~~~ 189 (346)
||+++|++|+...|. |.++ .++|.+|+.+..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s-~e~L~~fi~~~~ 139 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRS-TEKLAAFALGDF 139 (224)
T ss_pred CEEEEEECCEEEEeeCCCCC-HHHHHHHHHHHH
Confidence 999999999877664 5566 448999988754
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=119.76 Aligned_cols=96 Identities=25% Similarity=0.570 Sum_probs=83.9
Q ss_pred EEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|..+|.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+ .++.++++|+|+++|++++|+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 457899999998776 89999999999999999999999999999987 8999999 678999999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhh
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.. .|.|.++.+. |..|++
T Consensus 80 ~g~~~~~~~g~~~~~~---l~~~i~ 101 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAES---LIEFIE 101 (103)
T ss_dssp TTEEEEEEESSSSHHH---HHHHHH
T ss_pred CCcEEEEEECCCCHHH---HHHHHH
Confidence 99854 7899876333 666654
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=119.70 Aligned_cols=95 Identities=14% Similarity=0.264 Sum_probs=81.6
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
+.+++.++|++.+.++ .++|.||++||++|+.+.|.|.++++.+.+ .++.++.+| +..+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5688999999999765 599999999999999999999999999854 347777766 6689999999999999999
Q ss_pred ecCC-cceecCCcchhHHHHHHH
Q psy160 164 RHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
++|+ ...|.|.++.+ +|.+|+
T Consensus 81 ~~g~~~~~~~G~~~~~-~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLD-SLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHH-HHHhhC
Confidence 9887 45699998854 788775
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=118.92 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=81.5
Q ss_pred eeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|.+++++++++.+.++ ++++|+||++||++|+++.|.|.++++.+.+ .+.++.+| +..++++|+|+++|++++|.
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 6789999999988665 4599999999999999999999999998754 36666655 77899999999999999999
Q ss_pred cCC--cceecCCcchhHHHHHHH
Q psy160 165 HRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 ~g~--~~~y~g~~~~~~~i~~fi 185 (346)
+|. ...|.|.++.+ +|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~-~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAK-AIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHH-HHHHHh
Confidence 883 67899998855 899986
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=122.77 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=81.5
Q ss_pred CcEEEccHHHHHHHHh-ccceEEEEEEcCCChh--hH--HHHHHHHHHHhhc--CcCceEEEEE---cChhhhhhCCCcc
Q psy160 192 DRIELITRVMLETMVE-ETQYLAVYFYKLNCNI--CD--QILEGLEKVDDEC--DIYGIHMVKI---QDPQLAKRYSIKT 261 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~--c~--~~~~~~~~la~~~--~~~~i~~~~i---~~~~~~~~~~i~~ 261 (346)
..+..+|.++|++.+. ++.++++.|+++||++ |+ .+.|.+.++|.++ .+ ++.|+++ .+++++++|+|++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHHHHHHcCCcc
Confidence 4677889999998655 5568888888888877 99 8899999998887 54 7999999 6899999999999
Q ss_pred ccEEEEEeCCeEEEeecCccccccchhhhhhh
Q psy160 262 FPALVYFRNGNPLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 262 ~Pti~~~~~g~~~~y~g~~~~~~~~~~~~~i~ 293 (346)
+||+++|++|+.+.|.|.++.+. +..|+.
T Consensus 88 iPTl~lfk~G~~v~~~G~~~~~~---l~~~l~ 116 (120)
T cd03065 88 EDSIYVFKDDEVIEYDGEFAADT---LVEFLL 116 (120)
T ss_pred ccEEEEEECCEEEEeeCCCCHHH---HHHHHH
Confidence 99999999999888999986433 555554
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=121.38 Aligned_cols=97 Identities=10% Similarity=0.139 Sum_probs=79.9
Q ss_pred eecCHHHHHHHH-h--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 90 EEVNRRMLDKLL-E--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 90 ~~l~~~~~~~~~-~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
..++.++|++.+ . .+++++|.||+|||++|+.+.|.|+++++.+.+.++.++.+| .+.++++++|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 346778887644 2 468999999999999999999999999999965457777776 6789999999999999999
Q ss_pred ecCCcc-eecCCcchhHHHHHHHhh
Q psy160 164 RHRFPS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 164 ~~g~~~-~y~g~~~~~~~i~~fi~~ 187 (346)
++|+.. .+.|..+ .+.|.+|+.+
T Consensus 87 ~~g~~~~~~~G~~~-~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFT-KQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCC-HHHHHHHHhc
Confidence 999854 4578777 4489999875
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=120.01 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=76.9
Q ss_pred cEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++.+ +++++++|.||++||++|+.+.|.|+++++++.+ .+.++++ .++++|++++|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 45688999999975 5567999999999999999999999999999875 6889988 57889999999999999999
Q ss_pred eCC-e-EEEeecCcc
Q psy160 269 RNG-N-PLIFEGENK 281 (346)
Q Consensus 269 ~~g-~-~~~y~g~~~ 281 (346)
++| + ...|.|..+
T Consensus 81 ~~g~~~~~~~~G~~~ 95 (104)
T cd03004 81 PGNASKYHSYNGWHR 95 (104)
T ss_pred cCCCCCceEccCCCC
Confidence 987 4 567888765
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=119.06 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=70.4
Q ss_pred HHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 199 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 199 ~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.+++++.+. ++++++|.|||+||++|+.|.|.+++++.++.+ .+.|+++ ++++++++|+|++.||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 467788765 577999999999999999999999999999986 5788888 7889999999999999999999986
Q ss_pred EE-eecCcc
Q psy160 274 LI-FEGENK 281 (346)
Q Consensus 274 ~~-y~g~~~ 281 (346)
+. ..|...
T Consensus 81 v~~~~G~~~ 89 (114)
T cd02954 81 MKIDLGTGN 89 (114)
T ss_pred EEEEcCCCC
Confidence 54 335443
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=117.67 Aligned_cols=97 Identities=18% Similarity=0.325 Sum_probs=82.8
Q ss_pred ceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC--ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA--DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~--~~~l~~~~~i~~~Ptl~~~ 163 (346)
+|.+|+.++|++.+.+. ++++|+||++||++|+.+.|.|.++++.+.+ ..+.++.+| ..+++..+++.++||+++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37789999999987654 7899999999999999999999999999865 457777766 5578899999999999999
Q ss_pred ecCC---cceecCCcchhHHHHHHH
Q psy160 164 RHRF---PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 164 ~~g~---~~~y~g~~~~~~~i~~fi 185 (346)
++|. ...|.|..+.. +|.+|+
T Consensus 81 ~~~~~~~~~~~~g~~~~~-~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLE-DLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHH-HHHhhC
Confidence 9876 56799998855 888885
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=117.06 Aligned_cols=80 Identities=15% Similarity=0.351 Sum_probs=69.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEE 178 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 178 (346)
++++++|.|||+||++|+.+.|.|+++++.+.+ +.++.+| ++.++++|+|+++||+++|++|....|.|.++.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~ 94 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLD 94 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCHH
Confidence 468899999999999999999999999998865 4455544 5789999999999999999999777899998854
Q ss_pred HHHHHHH
Q psy160 179 EEVLQWL 185 (346)
Q Consensus 179 ~~i~~fi 185 (346)
+|.+|+
T Consensus 95 -~l~~f~ 100 (100)
T cd02999 95 -SLAAFY 100 (100)
T ss_pred -HHHhhC
Confidence 898885
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=116.57 Aligned_cols=96 Identities=17% Similarity=0.333 Sum_probs=82.8
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
+.++++.+|++.++++++++|.||++||++|+++.|.+.++++.+.. ..+.++.+| +..++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 67889999999999999999999999999999999999999998852 346666554 568999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHH
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
|++|+ ...|.|..+.+ ++.+|+
T Consensus 82 ~~~g~~~~~~~g~~~~~-~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAE-DIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHH-HHHhhC
Confidence 99988 66799988855 888875
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=115.29 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=77.5
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--eCChhhHHhhCCCCcceEEEEecCCcc
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--MADPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
-|.++|+.++.++++++|.|||+||++|+.+.|.++++++.+.+..+.|+. +|..+++++|+|+++||+++|++|+..
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 478999999988899999999999999999999999999988643355555 457789999999999999999999854
Q ss_pred -eecCCcchhHHHHHHHhh
Q psy160 170 -IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~ 187 (346)
...|. + .+.+.+++.+
T Consensus 85 ~~~~G~-~-~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRGA-N-APLLNKTITE 101 (102)
T ss_pred EEEecC-C-hHHHHHHHhh
Confidence 45564 4 3378887754
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=115.85 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=84.2
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
|+.++|++.+.++++++|+||++||++|+.+.|.|+++++.+++. ++.++.+| ++.++++|+|+++|++++|.+|.
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 578899999988899999999999999999999999999998653 37777765 77899999999999999999887
Q ss_pred -cceecCCcchhHHHHHHHhhc
Q psy160 168 -PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 168 -~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+..|.|..+.+ +|..|+.++
T Consensus 81 ~~~~~~g~~~~~-~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLE-AIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHH-HHHHHHHhc
Confidence 78899998855 899998864
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >KOG0910|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-16 Score=120.28 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=83.9
Q ss_pred ceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+..++.++|++.+ +++.+++|.|||+||++|+.+.|.+++++..+.+. +.++++| +.+++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccccccchHhhcceeeeeEEEEE
Confidence 56677888998865 55689999999999999999999999999998553 7777776 7899999999999999999
Q ss_pred ecCCcc-eecCCcchhHHHHHHHhhc
Q psy160 164 RHRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+.. .+-|..+.+ .+.+++++.
T Consensus 123 knGe~~d~~vG~~~~~-~l~~~i~k~ 147 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKE-QLRSLIKKF 147 (150)
T ss_pred ECCEEeeeecccCCHH-HHHHHHHHH
Confidence 999966 577877744 788888764
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=114.43 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=68.5
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C----hhhhhhCCCccccEEEEEeC
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D----PQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~----~~~~~~~~i~~~Pti~~~~~ 270 (346)
+.++|++.++++++++|.|||+||++|+.+.|.++++++++.. .+.++++ + + ++++++|+|.+.||+++|++
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 4577888888889999999999999999999999999988543 4556655 3 2 68999999999999999999
Q ss_pred CeEEE-eecCcc
Q psy160 271 GNPLI-FEGENK 281 (346)
Q Consensus 271 g~~~~-y~g~~~ 281 (346)
|+.+. ..|..+
T Consensus 82 G~~v~~~~G~~~ 93 (103)
T PHA02278 82 GQLVKKYEDQVT 93 (103)
T ss_pred CEEEEEEeCCCC
Confidence 98664 556544
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=114.25 Aligned_cols=91 Identities=8% Similarity=0.137 Sum_probs=73.5
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeCC-----hhhHHhhCCCCcceEEEEecC
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD-----PRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~~-----~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+.++|.+.+.++++++|.|||+||++|+.+.|.++++++.+.. ..+..+++|. +.++++|+|.+.||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 4678888888889999999999999999999999999987532 2355556663 589999999999999999999
Q ss_pred Ccc-eecCCcchhHHHHHH
Q psy160 167 FPS-IYRGDLSEEEEVLQW 184 (346)
Q Consensus 167 ~~~-~y~g~~~~~~~i~~f 184 (346)
+.+ +..|..+.+ .+.++
T Consensus 83 ~~v~~~~G~~~~~-~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPM-QLQEL 100 (103)
T ss_pred EEEEEEeCCCCHH-HHHhh
Confidence 844 577866633 56554
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=122.81 Aligned_cols=169 Identities=14% Similarity=0.232 Sum_probs=114.9
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCc-c
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFP-S 169 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~-~ 169 (346)
.+.++++++++++ ...+++|+|+||++|+.+.|.+.++++++.. +.|+.++.. |+|.++||+++|++|+. -
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA-----DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence 3578888888765 7789999999999999999999999998743 889998854 99999999999999984 4
Q ss_pred eecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEE---EcCCChhhHHHHHHHHHHHhhcCcCceEEE
Q psy160 170 IYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYF---YKLNCNICDQILEGLEKVDDECDIYGIHMV 246 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F---~~~~c~~c~~~~~~~~~la~~~~~~~i~~~ 246 (346)
++.|... . .+..++.+...+.... ...+-+++++++++.++..= +.|+|++|+++...|.+..-. ....
T Consensus 77 r~~G~~~-~-~~~~~~~~~~~~~~~~-~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~-----y~~~ 148 (204)
T PTZ00062 77 SLEGCNT-S-TLVSFIRGWAQKGSSE-DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK-----YETY 148 (204)
T ss_pred eeeCCCH-H-HHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC-----EEEE
Confidence 5777654 3 6888888776543321 12233445555654433222 237999999988888876322 2233
Q ss_pred EE-cChhhh----hhCCCccccEEEEEeCCeEEEeecCc
Q psy160 247 KI-QDPQLA----KRYSIKTFPALVYFRNGNPLIFEGEN 280 (346)
Q Consensus 247 ~i-~~~~~~----~~~~i~~~Pti~~~~~g~~~~y~g~~ 280 (346)
.+ .+.++. +.-|-..+|.+ |-+|+.+ |+.
T Consensus 149 DI~~d~~~~~~l~~~sg~~TvPqV--fI~G~~I---GG~ 182 (204)
T PTZ00062 149 NIFEDPDLREELKVYSNWPTYPQL--YVNGELI---GGH 182 (204)
T ss_pred EcCCCHHHHHHHHHHhCCCCCCeE--EECCEEE---cCh
Confidence 34 333332 22344456655 4566543 554
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=112.77 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=72.5
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEEEEeCCeE
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.-+.++++++++++++++|.|||+||++|+.+.|.++++++.+.+..+.|+.+ ++++++++|+|+++||+++|++|+.
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 35778999998889999999999999999999999999999987534777777 6778999999999999999999987
Q ss_pred EEeecC
Q psy160 274 LIFEGE 279 (346)
Q Consensus 274 ~~y~g~ 279 (346)
+....+
T Consensus 84 ~~~~~G 89 (102)
T cd02948 84 VAVIRG 89 (102)
T ss_pred EEEEec
Confidence 654333
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=114.95 Aligned_cols=93 Identities=14% Similarity=0.264 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
+++|++. .+++.++|.||++||++|+.+.|.|+++++.++. .++.++.+| .+.++++++|+++||+++|++|..
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 3778875 4567999999999999999999999999998843 346676655 678999999999999999988777
Q ss_pred ceecCCcchhHHHHHHHhhc
Q psy160 169 SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 169 ~~y~g~~~~~~~i~~fi~~~ 188 (346)
..|.|..+. ++|.+|+++.
T Consensus 85 ~~~~G~~~~-~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTK-DDIVEFANRV 103 (104)
T ss_pred eeecCCCCH-HHHHHHHHhh
Confidence 779998874 4899998763
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-15 Score=118.62 Aligned_cols=99 Identities=18% Similarity=0.371 Sum_probs=85.4
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++++.++++++|.||++||++|+.+.|.+.++++.+.. ++.++.+| .+.++++|+|.++||+++|+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 566789999999998889999999999999999999999999988754 37777766 77899999999999999999
Q ss_pred cCCcc-eecCCcchhHHHHHHHhhc
Q psy160 165 HRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+.. .+.|..+ .+.+.+|+.+.
T Consensus 115 ~G~~v~~~~G~~~-~e~l~~~l~~~ 138 (139)
T PRK10996 115 NGQVVDMLNGAVP-KAPFDSWLNEA 138 (139)
T ss_pred CCEEEEEEcCCCC-HHHHHHHHHHh
Confidence 99844 5788877 44899998764
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=115.91 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=75.5
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c--ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q--DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~--~~~~~~~~~i~~~Pti~~ 267 (346)
+..++.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+ . +.+++++|+|+++||+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 56789999999764 567799999999999999999999999999885 6777777 3 678999999999999999
Q ss_pred EeCCe------EEEeecCccc
Q psy160 268 FRNGN------PLIFEGENKI 282 (346)
Q Consensus 268 ~~~g~------~~~y~g~~~~ 282 (346)
|++|+ ...|.|.++.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~ 101 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSA 101 (109)
T ss_pred EeCCCcccccccccccCccCH
Confidence 99885 4678888763
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=113.73 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=84.0
Q ss_pred cCceeecCHHHHHHH-HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVNRRMLDKL-LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
++.|.+++.++|++. ++.+++++|.||+|||++|+.+.|.|+++++.+.+. +.++.+| .+.++++|+|+++||++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 457889999999875 555789999999999999999999999999998543 6666654 67899999999999999
Q ss_pred EEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 162 YFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 162 ~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|++|+. ..+.|..+.+ .|.+++...
T Consensus 81 ~~~~G~~~~~~~G~~~~~-~l~~~i~~~ 107 (109)
T PRK09381 81 LFKNGEVAATKVGALSKG-QLKEFLDAN 107 (109)
T ss_pred EEeCCeEEEEecCCCCHH-HHHHHHHHh
Confidence 9999984 4678887744 788888764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=131.19 Aligned_cols=100 Identities=21% Similarity=0.458 Sum_probs=86.0
Q ss_pred CcEEEccHHHHHHH-Hhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 192 DRIELITRVMLETM-VEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~~~~~~~-~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
..+.++|..||++. +.+ ..||+|+||+|||++|+.+.|.+++++..++| .+.++++ .++.++..|||+++||+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 35789999999884 443 45999999999999999999999999999998 8999999 78999999999999999
Q ss_pred EEEeCCeEEE-eecCccccccchhhhhhhcc
Q psy160 266 VYFRNGNPLI-FEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 266 ~~~~~g~~~~-y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|++|+++. |.|....+. +..|+.+.
T Consensus 102 ~af~dGqpVdgF~G~qPesq---lr~~ld~~ 129 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQ---LRQFLDKV 129 (304)
T ss_pred EEeeCCcCccccCCCCcHHH---HHHHHHHh
Confidence 9999999886 888775322 66676654
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=114.47 Aligned_cols=74 Identities=14% Similarity=0.344 Sum_probs=63.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
|.|||+||++|+++.|.|+++++.+.. +.++.+| +++++.+|+|+++||+++|++|....|.|..+. +++.+|
T Consensus 23 V~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~-~~l~~f 99 (100)
T cd02999 23 VLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL-DSLAAF 99 (100)
T ss_pred EEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCH-HHHHhh
Confidence 689999999999999999999998853 5555543 478999999999999999999976789998766 588888
Q ss_pred H
Q psy160 77 L 77 (346)
Q Consensus 77 i 77 (346)
+
T Consensus 100 ~ 100 (100)
T cd02999 100 Y 100 (100)
T ss_pred C
Confidence 5
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=112.91 Aligned_cols=96 Identities=22% Similarity=0.413 Sum_probs=81.6
Q ss_pred eeecCHHHHHHHHhcCC-cEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC----ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEENE-FVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~-~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+++++++++.+.+.+ ++++.||++||++|+++.|.|..+++.+. ..++.++.+| +.++|++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56789999999887654 89999999999999999999999999985 3357887776 468999999999999999
Q ss_pred EecCC--cceecCCcchhHHHHHHH
Q psy160 163 FRHRF--PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 163 ~~~g~--~~~y~g~~~~~~~i~~fi 185 (346)
|.+|. ...|.|.++.+ +|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~-~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLE-DLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHH-HHHhhC
Confidence 99773 66799998854 888875
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=138.41 Aligned_cols=102 Identities=14% Similarity=0.264 Sum_probs=84.2
Q ss_pred ccCceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-C-hhhH-HhhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-D-PRYA-RKWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~-~~l~-~~~~i~~ 156 (346)
.+..|.+||.+||+++++ .+++++|.||+|||++|+.+.|.|+++++.+.+.++.++.+ | + ..++ ++|+|++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 345899999999999986 56899999999999999999999999999986545666655 4 2 2454 6899999
Q ss_pred cceEEEEecCC--cceecC-CcchhHHHHHHHhh
Q psy160 157 LPAVVYFRHRF--PSIYRG-DLSEEEEVLQWLIT 187 (346)
Q Consensus 157 ~Ptl~~~~~g~--~~~y~g-~~~~~~~i~~fi~~ 187 (346)
+||+++|++|. +..|.| .++ .++|+.|++.
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~-~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRD-VDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCC-HHHHHHHHHh
Confidence 99999999875 678985 677 4499999874
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=110.56 Aligned_cols=89 Identities=27% Similarity=0.432 Sum_probs=73.9
Q ss_pred HHHHHHh-c-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc-c
Q psy160 96 MLDKLLE-E-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-S 169 (346)
Q Consensus 96 ~~~~~~~-~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~ 169 (346)
+|++.+. + +++++|.||++||++|+.+.|.++++++.+.+ .+.++.+| .+.++++|+|.++||+++|++|+. .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 5666664 4 46999999999999999999999999998854 36677766 789999999999999999998874 4
Q ss_pred eecCCcchhHHHHHHHh
Q psy160 170 IYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~ 186 (346)
.|.|..+.+ +|.+|++
T Consensus 81 ~~~g~~~~~-~l~~~l~ 96 (96)
T cd02956 81 GFQGAQPEE-QLRQMLD 96 (96)
T ss_pred eecCCCCHH-HHHHHhC
Confidence 588988744 8888863
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=128.24 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=89.2
Q ss_pred ceeecCHHHHHHHHhc-C--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEVNRRMLDKLLEE-N--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~-~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.|.++|+.||+..+.. + .+++|+||+|||++|+.+.|.+++++..+++. +.++++| ++.++.+|||++.||++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 5999999999986633 2 58999999999999999999999999998764 7777765 88999999999999999
Q ss_pred EEecCCcce-ecCCcchhHHHHHHHhhcccc
Q psy160 162 YFRHRFPSI-YRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 162 ~~~~g~~~~-y~g~~~~~~~i~~fi~~~~~~ 191 (346)
.|.+|+|+. |.|... ++.+.+|+.+...+
T Consensus 103 af~dGqpVdgF~G~qP-esqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQP-ESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCc-HHHHHHHHHHhcCh
Confidence 999999876 999888 55899999987643
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=113.79 Aligned_cols=93 Identities=15% Similarity=0.373 Sum_probs=76.3
Q ss_pred EEEccHHHHHHHHhccceEEEEEEc--CCCh---hhHHHHHHHHHHHhhcCcCceEEEEE--------cChhhhhhCCCc
Q psy160 194 IELITRVMLETMVEETQYLAVYFYK--LNCN---ICDQILEGLEKVDDECDIYGIHMVKI--------QDPQLAKRYSIK 260 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~--~~c~---~c~~~~~~~~~la~~~~~~~i~~~~i--------~~~~~~~~~~i~ 260 (346)
+..|+.++|++++++++.+||.||| |||+ +|+.+.|.+.+.+.. +.+++| .+.++|++|+|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHhCCC
Confidence 5689999999999999999999999 9999 888888888777643 667777 247899999999
Q ss_pred --cccEEEEEeCCe---EEEeecC-ccccccchhhhhhhc
Q psy160 261 --TFPALVYFRNGN---PLIFEGE-NKILKGTYIGTYIST 294 (346)
Q Consensus 261 --~~Pti~~~~~g~---~~~y~g~-~~~~~~~~~~~~i~~ 294 (346)
+||||.+|++|. +..|.|+ |+.+. |..|++.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~---lv~~v~~ 114 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDA---LQRFLKG 114 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHH---HHHHHHh
Confidence 999999999884 6789996 86433 5555554
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-15 Score=111.55 Aligned_cols=88 Identities=17% Similarity=0.436 Sum_probs=75.7
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+..++.++|++.++++ +++|.||++||++|+.+.|.+.++++.+++ ..+.++.+ .+..++++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 4578999999988765 599999999999999999999999999864 25888888 56789999999999999999
Q ss_pred eCCeE-EEeecCccc
Q psy160 269 RNGNP-LIFEGENKI 282 (346)
Q Consensus 269 ~~g~~-~~y~g~~~~ 282 (346)
++|+. ..|.|.++.
T Consensus 81 ~~g~~~~~~~G~~~~ 95 (102)
T cd03005 81 KDGEKVDKYKGTRDL 95 (102)
T ss_pred eCCCeeeEeeCCCCH
Confidence 99974 468898763
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-15 Score=111.93 Aligned_cols=88 Identities=19% Similarity=0.368 Sum_probs=76.5
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++.+++++.+. .+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+ .+++++++|+|+++|++++|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 46788999999765 455699999999999999999999999999876 6888888 577899999999999999999
Q ss_pred CC--eEEEeecCccc
Q psy160 270 NG--NPLIFEGENKI 282 (346)
Q Consensus 270 ~g--~~~~y~g~~~~ 282 (346)
+| ....|.|+++.
T Consensus 81 ~~~~~~~~~~g~~~~ 95 (103)
T cd03001 81 AGKNSPQDYQGGRTA 95 (103)
T ss_pred CCCcceeecCCCCCH
Confidence 88 46789998763
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-15 Score=138.28 Aligned_cols=103 Identities=14% Similarity=0.252 Sum_probs=86.8
Q ss_pred ccCceeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHH-hhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLE---ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYAR-KWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~-~~~i~~ 156 (346)
.+..|.+++.++|++++. .+++++|.||+|||++|+.+.|.|+++++.+.+.++.|+.+| +..+|. +|+|++
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 345889999999999874 568999999999999999999999999999866568888775 457886 699999
Q ss_pred cceEEEEecCC--cceecC-CcchhHHHHHHHhhc
Q psy160 157 LPAVVYFRHRF--PSIYRG-DLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~~g~--~~~y~g-~~~~~~~i~~fi~~~ 188 (346)
+||+++|++|. +..|.| .++ .++|+.|++..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~-~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRD-VDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcC-HHHHHHHHHHh
Confidence 99999999875 678986 566 45999999763
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=109.97 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=81.8
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---ChhhHHhhCCCCcceEEEEecC
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+++.++|.+.+.++++++|+||++||++|+.+.|.|.++++.++ ..++.++.++ +..++++|+|+++||+++|.++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 57889999999998899999999999999999999999999884 3458888776 5789999999999999999987
Q ss_pred --CcceecCCcchhHHHHHHH
Q psy160 167 --FPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 167 --~~~~y~g~~~~~~~i~~fi 185 (346)
....|.|..+ .+++.+|+
T Consensus 82 ~~~~~~~~g~~~-~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRT-LESLVEFI 101 (101)
T ss_pred CcccccCCCCcC-HHHHHhhC
Confidence 4777999886 44788774
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-15 Score=112.95 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=75.9
Q ss_pred EccHHHHHH-HHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 196 LITRVMLET-MVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 196 ~l~~~~~~~-~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.++.++|++ ++. .+++++|.||++||++|+.+.|.++++++++.+.++.++++ .++.++++++|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 456677875 443 57899999999999999999999999999997645888888 567899999999999999999
Q ss_pred CCeEEEe-ecCccccccchhhhhhh
Q psy160 270 NGNPLIF-EGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~~y-~g~~~~~~~~~~~~~i~ 293 (346)
+|+...+ .|..+.+. +..+++
T Consensus 88 ~g~~~~~~~G~~~~~~---l~~~i~ 109 (111)
T cd02963 88 NGQVTFYHDSSFTKQH---VVDFVR 109 (111)
T ss_pred CCEEEEEecCCCCHHH---HHHHHh
Confidence 9986554 67664322 555554
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=116.97 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=77.7
Q ss_pred ccccCceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC-
Q psy160 83 FEIKNEIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK- 156 (346)
Q Consensus 83 p~~~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~- 156 (346)
+..+..+.++++++|++.+..+ ++++|.||+|||++|+.+.|.|+++++.+.+.++.|+.+| +++++++|+|.+
T Consensus 24 ~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 24 YMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred cCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 4556789999999999988543 5899999999999999999999999999865558888776 788999999988
Q ss_pred -----cceEEEEecCCcc-eecC
Q psy160 157 -----LPAVVYFRHRFPS-IYRG 173 (346)
Q Consensus 157 -----~Ptl~~~~~g~~~-~y~g 173 (346)
+||+++|++|+.+ ++.|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 9999999999844 4555
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=112.17 Aligned_cols=89 Identities=19% Similarity=0.471 Sum_probs=74.6
Q ss_pred cEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-Chhhhh-hCCCccccE
Q psy160 193 RIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-DPQLAK-RYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-~~~~~~-~~~i~~~Pt 264 (346)
.|..++.++|+.+.. ++++++|.||++||++|+.+.|.|.++++.+++.++.++.+ . +..++. .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 466889999998763 46899999999999999999999999999998645888888 2 456776 499999999
Q ss_pred EEEEeCC--eEEEeecC-cc
Q psy160 265 LVYFRNG--NPLIFEGE-NK 281 (346)
Q Consensus 265 i~~~~~g--~~~~y~g~-~~ 281 (346)
+++|++| ....|.|. ++
T Consensus 82 i~~f~~~~~~~~~y~g~~~~ 101 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRD 101 (109)
T ss_pred EEEEcCCCCCceeccCCCCC
Confidence 9999876 36789985 54
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=125.22 Aligned_cols=90 Identities=23% Similarity=0.482 Sum_probs=78.6
Q ss_pred cCcEEEccHHHHHHHHhc-----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccc
Q psy160 191 EDRIELITRVMLETMVEE-----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~-----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~ 262 (346)
++.+..++.++|+++++. +++++|.||++||++|+.+.|.|+++++++++ .+.++.+ .+++++++|+|+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcC
Confidence 346789999999997653 47999999999999999999999999999986 6888887 67889999999999
Q ss_pred cEEEEEeCCeEEEeec-Ccc
Q psy160 263 PALVYFRNGNPLIFEG-ENK 281 (346)
Q Consensus 263 Pti~~~~~g~~~~y~g-~~~ 281 (346)
||+++|++|+.+.|.+ .++
T Consensus 108 PTl~~f~~G~~v~~~~G~~s 127 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRS 127 (224)
T ss_pred CEEEEEECCEEEEeeCCCCC
Confidence 9999999999887764 454
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=110.97 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
.+++++.+. ++++++|.|||+||++|+.+.|.+++++.++.+. +.|+++| .++++++|+|.+.||+++|++|+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 467888886 4578999999999999999999999999998653 5666665 889999999999999999999984
Q ss_pred ce-ecCCc
Q psy160 169 SI-YRGDL 175 (346)
Q Consensus 169 ~~-y~g~~ 175 (346)
.. ..|..
T Consensus 81 v~~~~G~~ 88 (114)
T cd02954 81 MKIDLGTG 88 (114)
T ss_pred EEEEcCCC
Confidence 43 44543
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=109.91 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=73.1
Q ss_pred CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C---hhhHHhhCCCCcceEEEEe
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D---PRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~---~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+. ++.|+.+| + ..++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788888865 6899999999999999999999999999983 36777665 2 3799999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHh
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~ 186 (346)
+|+ ...+.|... . ++.+-+.
T Consensus 80 ~G~~v~~~~G~~~-~-~l~~~~~ 100 (103)
T cd02985 80 DGEKIHEEEGIGP-D-ELIGDVL 100 (103)
T ss_pred CCeEEEEEeCCCH-H-HHHHHHH
Confidence 998 456888654 3 5665543
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=109.31 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=77.0
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCC--ChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETD--HKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
...+++.+||++.+..+...+|.||++| |++|..+.|.+.++++++.+. +.|+++| ++.++.+|+|++.||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 3567899999999988899999999997 999999999999999998653 5666554 789999999999999999
Q ss_pred EecCCcc-eecCCcchh
Q psy160 163 FRHRFPS-IYRGDLSEE 178 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~ 178 (346)
|++|+.. ...|..+..
T Consensus 90 fkdGk~v~~~~G~~~~~ 106 (111)
T cd02965 90 FRDGRYVGVLAGIRDWD 106 (111)
T ss_pred EECCEEEEEEeCccCHH
Confidence 9999844 567876643
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=107.96 Aligned_cols=80 Identities=21% Similarity=0.467 Sum_probs=68.8
Q ss_pred HHHHHH-hc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-
Q psy160 201 MLETMV-EE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL- 274 (346)
Q Consensus 201 ~~~~~~-~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~- 274 (346)
+|++.+ ++ +++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .+..++++|+|.++|++++|++|+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 466654 44 57999999999999999999999999999986 6888888 67899999999999999999999764
Q ss_pred EeecCcc
Q psy160 275 IFEGENK 281 (346)
Q Consensus 275 ~y~g~~~ 281 (346)
.+.|..+
T Consensus 81 ~~~g~~~ 87 (96)
T cd02956 81 GFQGAQP 87 (96)
T ss_pred eecCCCC
Confidence 5778765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=114.59 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=75.3
Q ss_pred CcEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcc-----
Q psy160 192 DRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKT----- 261 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~----- 261 (346)
..+..++.++|++.+.. +++++|.||++||++|+.+.|.++++++++.+.++.|+++ .+++++++|+|++
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 46778999999997643 4689999999999999999999999999987546999999 6789999999988
Q ss_pred -ccEEEEEeCCeEEE-eec
Q psy160 262 -FPALVYFRNGNPLI-FEG 278 (346)
Q Consensus 262 -~Pti~~~~~g~~~~-y~g 278 (346)
+||+++|++|+.+. +.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 99999999998653 444
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=110.11 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred ceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-----ChhhHHhhCCCCcce
Q psy160 88 EIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-----DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-----~~~l~~~~~i~~~Pt 159 (346)
.+.+++.++|++.+.++ ++++|.||++||++|+.+.|.|+++++.++.. .+.++.+| ...+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 68899999999998765 58999999999999999999999999988432 37777665 457999999999999
Q ss_pred EEEEecCCc-----ceecCCc
Q psy160 160 VVYFRHRFP-----SIYRGDL 175 (346)
Q Consensus 160 l~~~~~g~~-----~~y~g~~ 175 (346)
+++|++|.. ..|+|..
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~ 102 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPE 102 (114)
T ss_pred EEEECCCCccCCCCCcccCCc
Confidence 999998763 3466663
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=109.19 Aligned_cols=88 Identities=23% Similarity=0.436 Sum_probs=76.3
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---c--ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q--DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~--~~~~~~~~~i~~~Pti~~ 267 (346)
+..++..+++++++++++++|.||++||++|+.+.|.+.++++.+.+ ..+.++.+ . +..++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 56788899999888888999999999999999999999999998863 25778777 3 788999999999999999
Q ss_pred EeCCe-EEEeecCcc
Q psy160 268 FRNGN-PLIFEGENK 281 (346)
Q Consensus 268 ~~~g~-~~~y~g~~~ 281 (346)
|++|+ ...|.|..+
T Consensus 82 ~~~g~~~~~~~g~~~ 96 (104)
T cd02997 82 FENGKFVEKYEGERT 96 (104)
T ss_pred EeCCCeeEEeCCCCC
Confidence 99997 456788765
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-13 Score=112.43 Aligned_cols=167 Identities=23% Similarity=0.430 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeC--CceeeecCCCCCHHHHHHHHhccCCccccCcee
Q psy160 13 DILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIE 90 (346)
Q Consensus 13 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~--~~~~~y~G~~~~~~~i~~~i~~~~~p~~~~~v~ 90 (346)
.....|.++|+.+.. .+.|+.+.+.++|+++++.. |++++|++ +.+..|.|.....++|.+||..+..| .+.
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P----~v~ 80 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP----LVP 80 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST----SCE
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc----ccc
Confidence 456678999998853 28999999999999999999 99999998 45789999833446999999999999 999
Q ss_pred ecCHHHHHHHHhcCCc-EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEe
Q psy160 91 EVNRRMLDKLLEENEF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFR 164 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~-~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~ 164 (346)
++|.+++..+...+.+ ++++|+.........+...++.+|+.+++. +.|+.+| .+++++.+|++ .+|+++++.
T Consensus 81 ~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 81 ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 9999999999988765 788888777788889999999999998653 6666655 67899999998 899999998
Q ss_pred c-CCcce--ecCCcchhHHHHHHHhh
Q psy160 165 H-RFPSI--YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~-g~~~~--y~g~~~~~~~i~~fi~~ 187 (346)
. +..+. +.|..+. ++|.+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~-~~i~~Fl~d 184 (184)
T PF13848_consen 160 SNKGKYYYLPEGEITP-ESIEKFLND 184 (184)
T ss_dssp TTTSEEEE--SSCGCH-HHHHHHHHH
T ss_pred CCCCcEEcCCCCCCCH-HHHHHHhcC
Confidence 3 22222 4777774 499999864
|
... |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=109.22 Aligned_cols=88 Identities=17% Similarity=0.473 Sum_probs=75.3
Q ss_pred EEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE--cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|..++.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+++ ..+.++.+ +..+++..+++.++|++++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFP 81 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEc
Confidence 56889999999765 458999999999999999999999999999875 35888888 445788899999999999999
Q ss_pred CCe---EEEeecCcc
Q psy160 270 NGN---PLIFEGENK 281 (346)
Q Consensus 270 ~g~---~~~y~g~~~ 281 (346)
+|+ ...|.|..+
T Consensus 82 ~~~~~~~~~~~g~~~ 96 (104)
T cd02995 82 AGDKSNPIKYEGDRT 96 (104)
T ss_pred CCCcCCceEccCCcC
Confidence 876 567888875
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-13 Score=117.75 Aligned_cols=235 Identities=17% Similarity=0.300 Sum_probs=157.1
Q ss_pred cccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHH---H--HHH-HHHHHHhhccCCCcEEEEeC---ChhhHHhhCC
Q psy160 84 EIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSV---K--VLE-RLEKIDGETDNMDITFVKMA---DPRYARKWGV 154 (346)
Q Consensus 84 ~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~---~--~~~-~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i 154 (346)
++.+.|+.||.+||.+.+++.+..+|+|+.|--.+-. + +.. .++-+|+.+...+|+|+.+| ..++++++|+
T Consensus 31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 4667999999999999999999999999988643321 1 122 45666777777789999887 7789999999
Q ss_pred CCcceEEEEecCCcceecCCcchhHHHHHHHhhccccCcEEEc-cHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHH
Q psy160 155 TKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELI-TRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLE 232 (346)
Q Consensus 155 ~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l-~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~ 232 (346)
...++|.+|++|+.+.|+|.++.. .+++|+......+ |..+ +..+++.+-+ +..+.+|.|+.+.-+ .....|+
T Consensus 111 ~E~~SiyVfkd~~~IEydG~~saD-tLVeFl~dl~edP-VeiIn~~~e~~~Fe~ied~~klIGyFk~~~s---~~yk~Fe 185 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYDGERSAD-TLVEFLLDLLEDP-VEIINNKHELKAFERIEDDIKLIGYFKSEDS---EHYKEFE 185 (383)
T ss_dssp -STTEEEEEETTEEEEE-S--SHH-HHHHHHHHHHSSS-EEEE-SHHHHHHHHH--SS-EEEEE-SSTTS---HHHHHHH
T ss_pred cccCcEEEEECCcEEEecCccCHH-HHHHHHHHhcccc-hhhhcChhhhhhhhhcccceeEEEEeCCCCc---HHHHHHH
Confidence 999999999999999999999954 9999999988764 5444 4556655533 446888888876422 3467899
Q ss_pred HHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCC
Q psy160 233 KVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPG 310 (346)
Q Consensus 233 ~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 310 (346)
++|..++. .+.|+.+-++.+|+++++. .-.+-+|+. .+|+...|.... + .-+..|++..+-|.+.+++.++...
T Consensus 186 eAAe~F~p-~IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~-e-~e~~~fi~~h~rptlrkl~~~~m~e 261 (383)
T PF01216_consen 186 EAAEHFQP-YIKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYT-E-EELVEFIEEHKRPTLRKLRPEDMFE 261 (383)
T ss_dssp HHHHHCTT-TSEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS---H-HHHHHHHHHT-S-SEEE--GGGHHH
T ss_pred HHHHhhcC-ceeEEEEecchhhhhcCcc-ccceeeeccccCCCccCCCCCCC-H-HHHHHHHHHhchhHhhhCChhhhhh
Confidence 99999996 8999999999999999996 777888875 357777765432 2 2288889988888888887776322
Q ss_pred ccchhhHHhhcceeEEeeccc
Q psy160 311 AFQTELVLRSLKIKIIGKCED 331 (346)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~ 331 (346)
.-... -.-+.|+.|++.
T Consensus 262 ~Wedd----~~g~hIvaFaee 278 (383)
T PF01216_consen 262 TWEDD----IDGIHIVAFAEE 278 (383)
T ss_dssp HHHSS----SSSEEEEEE--T
T ss_pred hhccc----CCCceEEEEecC
Confidence 22221 235667777763
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=113.50 Aligned_cols=97 Identities=19% Similarity=0.411 Sum_probs=81.5
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++++++++++++++|.||++||++|+.+.|.+.++++++.+ ++.++++ .+++++++|+|+++|++++|+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 445678899999988899999999999999999999999999999876 7888888 678999999999999999999
Q ss_pred CCeEEE-eecCccccccchhhhhhh
Q psy160 270 NGNPLI-FEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~~-y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.+. +.|..+.+. +..|++
T Consensus 115 ~G~~v~~~~G~~~~e~---l~~~l~ 136 (139)
T PRK10996 115 NGQVVDMLNGAVPKAP---FDSWLN 136 (139)
T ss_pred CCEEEEEEcCCCCHHH---HHHHHH
Confidence 998654 567654322 555554
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=108.20 Aligned_cols=81 Identities=15% Similarity=0.348 Sum_probs=68.3
Q ss_pred cHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC---hhhhhhCCCccccEEEEEe
Q psy160 198 TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD---PQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~---~~~~~~~~i~~~Pti~~~~ 269 (346)
+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. ++.|+.+ .+ .+++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 45788887654 7899999999999999999999999999983 6888888 23 3789999999999999999
Q ss_pred CCeEE-EeecCc
Q psy160 270 NGNPL-IFEGEN 280 (346)
Q Consensus 270 ~g~~~-~y~g~~ 280 (346)
+|+.+ .+.|..
T Consensus 80 ~G~~v~~~~G~~ 91 (103)
T cd02985 80 DGEKIHEEEGIG 91 (103)
T ss_pred CCeEEEEEeCCC
Confidence 99854 567754
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=107.60 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=77.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCC--ChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLN--CNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++..+|++.++.+.+++|.||++| |++|..+.|.+.++++++.+ .+.|+++ .++.++.+|+|+++||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 3457888999998888899999999997 99999999999999999986 6888888 7889999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
|++|+.+ ...|..+
T Consensus 90 fkdGk~v~~~~G~~~ 104 (111)
T cd02965 90 FRDGRYVGVLAGIRD 104 (111)
T ss_pred EECCEEEEEEeCccC
Confidence 9999866 3566554
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=108.50 Aligned_cols=88 Identities=26% Similarity=0.453 Sum_probs=76.2
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++ +++.+++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .++.++++|+|+++|++++|
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 566788889987 566788999999999999999999999999999986 6888888 57888999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 83 ~~G~~~~~~~G~~~ 96 (109)
T PRK09381 83 KNGEVAATKVGALS 96 (109)
T ss_pred eCCeEEEEecCCCC
Confidence 999854 5667754
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=109.38 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=72.0
Q ss_pred CcEEEccHHHHHHHHhcc---ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 192 DRIELITRVMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~---~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
+.+..++.++|.+.+.+. ++++|.||+|||++|+.+.|.++++|+++. ++.|+++ .+ .++++|+|+++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 356678889998876654 799999999999999999999999999986 5788888 33 89999999999999
Q ss_pred EEEeCCeEE-EeecC
Q psy160 266 VYFRNGNPL-IFEGE 279 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~ 279 (346)
++|++|+.+ .+.|.
T Consensus 81 ~~f~~G~~v~~~~G~ 95 (113)
T cd02957 81 LVYKNGELIDNIVGF 95 (113)
T ss_pred EEEECCEEEEEEecH
Confidence 999999865 34453
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=106.23 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=67.1
Q ss_pred HHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 199 RVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 199 ~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.+++++.+. ++++++|.|+|+||++|+.|.|.++++|+++++ .+.|+++ +.+++++.|+|++.||+++|++|+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356777544 578999999999999999999999999999984 3888888 7899999999999999999999986
Q ss_pred EEe
Q psy160 274 LIF 276 (346)
Q Consensus 274 ~~y 276 (346)
+.-
T Consensus 81 ~~~ 83 (114)
T cd02986 81 MKV 83 (114)
T ss_pred EEE
Confidence 654
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=109.39 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=72.2
Q ss_pred CceeecCHHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcceEE
Q psy160 87 NEIEEVNRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~ 161 (346)
+.+.++++++|.+.+.+. ++++|.||+|||++|+.+.|.++++++.+.+ +.|+++| ...++++|+|+++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKAFLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhhHHHHhcCCCcCCEEE
Confidence 468889999999988765 7899999999999999999999999998754 6677776 22899999999999999
Q ss_pred EEecCCcc-eecC
Q psy160 162 YFRHRFPS-IYRG 173 (346)
Q Consensus 162 ~~~~g~~~-~y~g 173 (346)
+|++|+.. .+.|
T Consensus 82 ~f~~G~~v~~~~G 94 (113)
T cd02957 82 VYKNGELIDNIVG 94 (113)
T ss_pred EEECCEEEEEEec
Confidence 99999843 3444
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-14 Score=107.78 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=72.7
Q ss_pred cEEEccH-HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITR-VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~-~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++. ++|.+.++++++++|.||++||++|+.+.|.++++++++. ++.|+++ .+++++++|+|.+.||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3445554 8999988888999999999999999999999999999886 5788888 67789999999999999999
Q ss_pred eCCeEE-EeecC
Q psy160 269 RNGNPL-IFEGE 279 (346)
Q Consensus 269 ~~g~~~-~y~g~ 279 (346)
++|+.+ ++.|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999865 34443
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=108.10 Aligned_cols=91 Identities=13% Similarity=0.288 Sum_probs=73.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
++|+++ .++++++|.||++||++|+.+.|.++++++.+++ ..+.++.+ ..+.++++|+|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 567765 4567999999999999999999999999999853 24778777 56889999999999999999988777
Q ss_pred EeecCccccccchhhhhhhc
Q psy160 275 IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 275 ~y~g~~~~~~~~~~~~~i~~ 294 (346)
.|.|.++.+. +..|+++
T Consensus 86 ~~~G~~~~~~---l~~~~~~ 102 (104)
T cd03000 86 NYRGPRTKDD---IVEFANR 102 (104)
T ss_pred eecCCCCHHH---HHHHHHh
Confidence 7888775332 5555543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-14 Score=107.13 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEEEe
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.|++.++++++++|.||++||++|+.+.+.+ .++++.+.+ ++.++.+| ...++++|+|.++||+++|.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 56888888999999999999999999999988 577777754 57777665 25789999999999999998
Q ss_pred --cCC-cceecCCcchhHHHHHHH
Q psy160 165 --HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 165 --~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+|+ +..+.|..+.+ +|.+++
T Consensus 81 ~~~g~~~~~~~G~~~~~-~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTAD-EFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHH-HHHHHh
Confidence 566 56788988844 788776
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=106.42 Aligned_cols=94 Identities=24% Similarity=0.512 Sum_probs=79.1
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
++.++|++.+.++++++|.||++||++|+.+.+.++++++.+++. .+.++.+ .++.++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 467889998888889999999999999999999999999998753 3888887 678899999999999999999887
Q ss_pred -EEEeecCccccccchhhhhhh
Q psy160 273 -PLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 273 -~~~y~g~~~~~~~~~~~~~i~ 293 (346)
...|.|..+.+. +..|+.
T Consensus 81 ~~~~~~g~~~~~~---l~~~i~ 99 (102)
T TIGR01126 81 KPVDYEGGRDLEA---IVEFVN 99 (102)
T ss_pred cceeecCCCCHHH---HHHHHH
Confidence 778999876332 455544
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=103.79 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=78.3
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.+++.+.+.++ ++++|.||++||++|+.+.|.++++++.+.+ ++.++.+| +..++++|+|.++||+++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4677888877664 5999999999999999999999999988753 37777765 66899999999999999999887
Q ss_pred c-ceecCCcchhHHHHHHHhhc
Q psy160 168 P-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 168 ~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
. ..+.|..+. +.+.+|+.+.
T Consensus 80 ~~~~~~g~~~~-~~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSVGALPK-AALKQLINKN 100 (101)
T ss_pred EeeeecCCCCH-HHHHHHHHhh
Confidence 4 456787764 4899998764
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=103.40 Aligned_cols=90 Identities=17% Similarity=0.342 Sum_probs=73.6
Q ss_pred CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 93 NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 93 ~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+.+++++.+.+. ++++|.||++||++|+.+.|.++++++.+ ..++.++.+| .+.++++|+|+++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 467888888877 89999999999999999999999999986 3358888877 66899999999999999999988
Q ss_pred cce-ecCCcchhHHHHHHH
Q psy160 168 PSI-YRGDLSEEEEVLQWL 185 (346)
Q Consensus 168 ~~~-y~g~~~~~~~i~~fi 185 (346)
... +.|... + +|.+.+
T Consensus 80 ~~~~~~g~~~-~-~l~~~~ 96 (97)
T cd02984 80 IVDRVSGADP-K-ELAKKV 96 (97)
T ss_pred EEEEEeCCCH-H-HHHHhh
Confidence 543 556433 3 566554
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-14 Score=118.01 Aligned_cols=142 Identities=10% Similarity=0.183 Sum_probs=96.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCcee-eecCCCCCHHHHHHHHhc
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPL-LYDGDLFDEEKILTWLTS 79 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~-~y~G~~~~~~~i~~~i~~ 79 (346)
++|+|+||++|+.+.|.+.++++++. ++.|+.++.. |+|.+.||+++|++|..+ .+.|. +. ..+..++..
T Consensus 22 l~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~r~~G~-~~-~~~~~~~~~ 92 (204)
T PTZ00062 22 LYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA-----DANNEYGVFEFYQNSQLINSLEGC-NT-STLVSFIRG 92 (204)
T ss_pred EEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-----cCcccceEEEEEECCEEEeeeeCC-CH-HHHHHHHHH
Confidence 47889999999999999999999874 5889888744 999999999999999765 35563 23 367777766
Q ss_pred cCCccccCceeecCHHHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hH
Q psy160 80 QDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YA 149 (346)
Q Consensus 80 ~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~ 149 (346)
...+.. .+-..+-.++++.+++. +.|.. |+|++|++....|.+..-. .....++ .++ +.
T Consensus 93 ~~~~~~----~~~~~~~v~~li~~~~V--vvf~Kg~~~~p~C~~C~~~k~~L~~~~i~-----y~~~DI~~d~~~~~~l~ 161 (204)
T PTZ00062 93 WAQKGS----SEDTVEKIERLIRNHKI--LLFMKGSKTFPFCRFSNAVVNMLNSSGVK-----YETYNIFEDPDLREELK 161 (204)
T ss_pred HcCCCC----HHHHHHHHHHHHhcCCE--EEEEccCCCCCCChhHHHHHHHHHHcCCC-----EEEEEcCCCHHHHHHHH
Confidence 554311 11123456666666554 45543 7999999888777754322 2223332 222 33
Q ss_pred HhhCCCCcceEEE
Q psy160 150 RKWGVTKLPAVVY 162 (346)
Q Consensus 150 ~~~~i~~~Ptl~~ 162 (346)
+.-|-..+|.+.+
T Consensus 162 ~~sg~~TvPqVfI 174 (204)
T PTZ00062 162 VYSNWPTYPQLYV 174 (204)
T ss_pred HHhCCCCCCeEEE
Confidence 3446667787775
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=106.28 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=71.3
Q ss_pred CceeecCH-HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNR-RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~-~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++. ++|++.+.+++.++|+||+|||++|+.+.|.++++++.+.+ +.|+++| .+.++++|+|.+.||+++
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 46777776 99999999889999999999999999999999999998754 6777776 667999999999999999
Q ss_pred EecCCcc
Q psy160 163 FRHRFPS 169 (346)
Q Consensus 163 ~~~g~~~ 169 (346)
|++|+.+
T Consensus 82 fk~G~~v 88 (113)
T cd02989 82 FKNGKTV 88 (113)
T ss_pred EECCEEE
Confidence 9999743
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=106.71 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=164.5
Q ss_pred HHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhccCCccccCceeecC-
Q psy160 18 LEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVN- 93 (346)
Q Consensus 18 ~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~~~p~~~~~v~~l~- 93 (346)
++-+|+.+...||+|+.+| +.++++++|+..-+++.+|++|..+.|.|.+++ +-+++||.+-... +|..++
T Consensus 79 LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~sa-DtLVeFl~dl~ed----PVeiIn~ 153 (383)
T PF01216_consen 79 LELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSA-DTLVEFLLDLLED----PVEIINN 153 (383)
T ss_dssp HHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SH-HHHHHHHHHHHSS----SEEEE-S
T ss_pred HHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCH-HHHHHHHHHhccc----chhhhcC
Confidence 4444555577788887775 679999999999999999999999999999888 6999999987765 787776
Q ss_pred HHHHHHHHh-cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec--CCcc
Q psy160 94 RRMLDKLLE-ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH--RFPS 169 (346)
Q Consensus 94 ~~~~~~~~~-~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~ 169 (346)
..++..+-. ...+-+|-|+.+. ..| ..+|+.+|..+... |.|..+-++.+|++++++ .=.+-+|+. .+|+
T Consensus 154 ~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p~-IkFfAtfd~~vAk~L~lK-~nev~fyepF~~~pi 227 (383)
T PF01216_consen 154 KHELKAFERIEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQPY-IKFFATFDKKVAKKLGLK-LNEVDFYEPFMDEPI 227 (383)
T ss_dssp HHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHHHHHHHCTTT-SEEEEE-SHHHHHHHT-S-TT-EEEE-TTSSSEE
T ss_pred hhhhhhhhhcccceeEEEEeCCCCcHH----HHHHHHHHHhhcCc-eeEEEEecchhhhhcCcc-ccceeeeccccCCCc
Confidence 444544433 2356778877764 333 45788999999776 999999999999999997 778888886 4588
Q ss_pred eecCCcchhHHHHHHHhhccccCcEEEccHHHHHHH-Hh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEE
Q psy160 170 IYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETM-VE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMV 246 (346)
Q Consensus 170 ~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~-~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~ 246 (346)
...|...++.+|++|+.++..| .+..++.+++-+. -. -++.-+|.|...--+.-..+...++++|+.... .++.+.
T Consensus 228 ~ip~~p~~e~e~~~fi~~h~rp-tlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~Lsiv 306 (383)
T PF01216_consen 228 TIPGKPYTEEELVEFIEEHKRP-TLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIV 306 (383)
T ss_dssp EESSSS--HHHHHHHHHHT-S--SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EE
T ss_pred cCCCCCCCHHHHHHHHHHhchh-HhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEE
Confidence 8888777788999999999988 8889998886554 33 245666777666667778999999999998753 257777
Q ss_pred EE---cC----hhhhhhCCCc-cccEEEEEe
Q psy160 247 KI---QD----PQLAKRYSIK-TFPALVYFR 269 (346)
Q Consensus 247 ~i---~~----~~~~~~~~i~-~~Pti~~~~ 269 (346)
.| +. +-+.+.|+|. .-|.|-+..
T Consensus 307 wIDPD~fPllv~yWE~tF~Idl~~PqIGvVn 337 (383)
T PF01216_consen 307 WIDPDDFPLLVPYWEKTFGIDLSRPQIGVVN 337 (383)
T ss_dssp EE-GGG-HHHHHHHHHHHTT-TTS-EEEEEE
T ss_pred EECCCCCchhHHHHHhhcCccccCCceeEEe
Confidence 77 22 2346678875 349998885
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=102.37 Aligned_cols=81 Identities=21% Similarity=0.458 Sum_probs=69.3
Q ss_pred cHHHHHHHHhcc--ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 198 TRVMLETMVEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 198 ~~~~~~~~~~~~--~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
+.+++++++.+. ++++|.||++||++|+.+.+.++++++.+.. .+.++.+ ..++++++|+|+++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 457788887766 9999999999999999999999999999743 7888888 567899999999999999999998
Q ss_pred EEEe-ecC
Q psy160 273 PLIF-EGE 279 (346)
Q Consensus 273 ~~~y-~g~ 279 (346)
.+.. .|.
T Consensus 80 ~~~~~~g~ 87 (97)
T cd02984 80 IVDRVSGA 87 (97)
T ss_pred EEEEEeCC
Confidence 6544 443
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.8e-14 Score=105.70 Aligned_cols=88 Identities=25% Similarity=0.528 Sum_probs=74.5
Q ss_pred EEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---c-ChhhhhhCCCccccEEEE
Q psy160 194 IELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---Q-DPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~-~~~~~~~~~i~~~Pti~~ 267 (346)
+..++.+++++.+++ +++++|.||++||++|+.+.|.+.++++.++. ..+.++.+ . +++++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 457788899887764 45899999999999999999999999999872 25888888 4 688999999999999999
Q ss_pred EeCC--eEEEeecCcc
Q psy160 268 FRNG--NPLIFEGENK 281 (346)
Q Consensus 268 ~~~g--~~~~y~g~~~ 281 (346)
|++| ....|.|.++
T Consensus 82 ~~~~~~~~~~~~g~~~ 97 (105)
T cd02998 82 FPKGSTEPVKYEGGRD 97 (105)
T ss_pred EeCCCCCccccCCccC
Confidence 9877 3566888765
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=128.64 Aligned_cols=101 Identities=14% Similarity=0.425 Sum_probs=81.5
Q ss_pred cCcEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C-hhhh-hhCCCccc
Q psy160 191 EDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D-PQLA-KRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~-~~~~-~~~~i~~~ 262 (346)
...|..++.++|+++++ .+++++|.||+|||++|+.|.|.|+++|+++.+.++.|+.+ + + ..++ ++|+|+++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 45778899999999875 67899999999999999999999999999998645788877 2 2 2444 68999999
Q ss_pred cEEEEEeCCe--EEEeec-Cccccccchhhhhhhc
Q psy160 263 PALVYFRNGN--PLIFEG-ENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~~~g~--~~~y~g-~~~~~~~~~~~~~i~~ 294 (346)
||+++|++|+ ++.|.| .++.+. |..|++.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~---L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDS---LMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHH---HHHHHHh
Confidence 9999999884 678985 675433 6666654
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=105.44 Aligned_cols=80 Identities=14% Similarity=0.341 Sum_probs=68.4
Q ss_pred cEEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE-----cChhhhhhCCCccccE
Q psy160 193 RIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI-----QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i-----~~~~~~~~~~i~~~Pt 264 (346)
.+..++.++|++.+++ +++++|.||++||++|+.+.|.|+++++.+++. .+.++.+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4678899999997654 569999999999999999999999999988532 3778777 2457899999999999
Q ss_pred EEEEeCCe
Q psy160 265 LVYFRNGN 272 (346)
Q Consensus 265 i~~~~~g~ 272 (346)
+++|++|.
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999886
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=102.72 Aligned_cols=86 Identities=23% Similarity=0.502 Sum_probs=75.2
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE---cChhhhhhCCCccccEEEEEeCC
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
.++.+++.+.+++.++++|.||++||++|+.+.+.+.++++.++ +..+.++.+ .+..++++|+|+++|++++|+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 46788999988888899999999999999999999999999984 237889988 46899999999999999999988
Q ss_pred --eEEEeecCcc
Q psy160 272 --NPLIFEGENK 281 (346)
Q Consensus 272 --~~~~y~g~~~ 281 (346)
....|.|..+
T Consensus 82 ~~~~~~~~g~~~ 93 (101)
T cd02961 82 SKEPVKYEGPRT 93 (101)
T ss_pred CcccccCCCCcC
Confidence 4667888764
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-13 Score=99.71 Aligned_cols=83 Identities=23% Similarity=0.461 Sum_probs=71.5
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
..+.++++++++.+++++|.||++||++|+.+.+.++++++.+. ++.++.+ .+..++++|+|+++||+++|++|+
T Consensus 5 i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 5 VTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred ecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 44568888999999999999999999999999999999999875 4777777 567899999999999999999998
Q ss_pred EE-EeecCc
Q psy160 273 PL-IFEGEN 280 (346)
Q Consensus 273 ~~-~y~g~~ 280 (346)
.+ .+.|..
T Consensus 83 ~~~~~~G~~ 91 (98)
T PTZ00051 83 VVDTLLGAN 91 (98)
T ss_pred EEEEEeCCC
Confidence 65 466653
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=126.97 Aligned_cols=101 Identities=15% Similarity=0.437 Sum_probs=82.4
Q ss_pred cCcEEEccHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--Chhhhh-hCCCccc
Q psy160 191 EDRIELITRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAK-RYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~-~~~i~~~ 262 (346)
...|..++.++++++++ .+++++|.||+|||++|+.|.|.|+++++.+.+.++.|+++ + +.++++ +|+|+++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 34777899999999763 67899999999999999999999999999997656999998 2 457786 6999999
Q ss_pred cEEEEEeCCe--EEEeec-Cccccccchhhhhhhc
Q psy160 263 PALVYFRNGN--PLIFEG-ENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~~~g~--~~~y~g-~~~~~~~~~~~~~i~~ 294 (346)
||+++|++|. ++.|.| .++.+. |..|++.
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~---L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDS---LLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHH---HHHHHHH
Confidence 9999998774 678986 465332 6666654
|
|
| >KOG0907|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=101.31 Aligned_cols=71 Identities=24% Similarity=0.572 Sum_probs=62.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-EeecCc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~-~y~g~~ 280 (346)
.+++++|.|||+|||||+.+.|.+.+||.+|. ++.|+++ +..++++.++|+..||+++|++|+.+ .+-|..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC--CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCC
Confidence 46899999999999999999999999999998 4889988 45889999999999999999999754 455654
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=99.86 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=71.4
Q ss_pred eec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 90 EEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 90 ~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.++ +.+++++++..++.+++.||++||++|+.+.|.++++++.+.+ +.++.+| ...++++|+|.++||+++|++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 444 4688999999889999999999999999999999999997643 6666665 568999999999999999999
Q ss_pred CCcc-eecCCcc
Q psy160 166 RFPS-IYRGDLS 176 (346)
Q Consensus 166 g~~~-~y~g~~~ 176 (346)
|+.. .+.|...
T Consensus 81 g~~~~~~~G~~~ 92 (98)
T PTZ00051 81 GSVVDTLLGAND 92 (98)
T ss_pred CeEEEEEeCCCH
Confidence 9844 5777643
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=104.67 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred ccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE-EEeC
Q psy160 197 ITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV-YFRN 270 (346)
Q Consensus 197 l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~-~~~~ 270 (346)
-+.+++++.+. ++++++|.|||+||++|+.+.|.++++|+++.+ .+.|+++ +++++++.|+|++.|+++ +|++
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 35688888764 577999999999999999999999999999985 5777888 688999999999777766 9999
Q ss_pred Ce-EEEe-ec
Q psy160 271 GN-PLIF-EG 278 (346)
Q Consensus 271 g~-~~~y-~g 278 (346)
|+ .+.+ .|
T Consensus 88 g~~~vd~~tG 97 (142)
T PLN00410 88 KHIMIDLGTG 97 (142)
T ss_pred CeEEEEEecc
Confidence 98 5544 44
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=106.68 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeCC---hhhHHhhCCCCcceEEEEe-cCCc
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMAD---PRYARKWGVTKLPAVVYFR-HRFP 168 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~~---~~l~~~~~i~~~Ptl~~~~-~g~~ 168 (346)
...++..+.++++++|.||++||++|+.+.|.+.++++.+.. ..+..+.++. ..++++|+|.++||+++|. +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 355777778889999999999999999999999999998843 3355555553 4789999999999999995 6774
Q ss_pred -ceecCCcchhHHHHHHHhhcc
Q psy160 169 -SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 169 -~~y~g~~~~~~~i~~fi~~~~ 189 (346)
..+.|.... ++|.+++....
T Consensus 90 v~~~~G~~~~-~~l~~~l~~l~ 110 (142)
T cd02950 90 EGQSIGLQPK-QVLAQNLDALV 110 (142)
T ss_pred EEEEeCCCCH-HHHHHHHHHHH
Confidence 357787763 36777776644
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-12 Score=104.66 Aligned_cols=144 Identities=20% Similarity=0.382 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC--CcceecCC-cchhHHHHHHHhhccccCcEEEc
Q psy160 121 KVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR--FPSIYRGD-LSEEEEVLQWLITQKTEDRIELI 197 (346)
Q Consensus 121 ~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g--~~~~y~g~-~~~~~~i~~fi~~~~~~~~v~~l 197 (346)
.....|.++|+.+.+. +.|+.+.+.++++++++.. |++++|+++ ++..|.|. .+ .++|.+|+..+..| .+..+
T Consensus 7 ~~~~~f~~~A~~~~~~-~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~-~~~l~~fI~~~~~P-~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD-YQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFT-PEELKKFIKKNSFP-LVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTS-HHHHHHHHHHHSST-SCEEE
T ss_pred HHHHHHHHHHHhCcCC-cEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCC-HHHHHHHHHHhccc-ccccc
Confidence 5667899999998654 9999999999999999998 999999984 36889998 55 55999999999998 57799
Q ss_pred cHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--cccEEEEEe
Q psy160 198 TRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~Pti~~~~ 269 (346)
|.+++..+.....+ +++.|..........+...++.+|+.+++ .+.|+.+ ..+.+++.+|++ .+|+++++.
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 99999999888765 77777766666778889999999999987 7888888 467899999998 899999998
|
... |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=101.92 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=76.8
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC------------hhhHHhhC--
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWG-- 153 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------------~~l~~~~~-- 153 (346)
.+..++.+++.+.+++++..+|+|+++||++|+.+.|.+.++++. .+..+.+++++. .++.++++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 567789999999999999999999999999999999999999988 344577777762 14456655
Q ss_pred --CCCcceEEEEecCCcc-eecCCcchhHHHHHHHh
Q psy160 154 --VTKLPAVVYFRHRFPS-IYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 154 --i~~~Ptl~~~~~g~~~-~y~g~~~~~~~i~~fi~ 186 (346)
|.+.||+++|++|+.+ ...|...+.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999844 45675444557887753
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=98.34 Aligned_cols=93 Identities=24% Similarity=0.469 Sum_probs=74.5
Q ss_pred ccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 197 ITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 197 l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
++.+++.+.+++ .++++|.||++||++|+.+.+.++++++.+.+ ++.++.+ .+..++++|+|.++|++++|++|+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 356778886655 55999999999999999999999999988875 6888888 577899999999999999999997
Q ss_pred EE-EeecCccccccchhhhhhh
Q psy160 273 PL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 273 ~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
.. .+.|..+.+. +..+++
T Consensus 80 ~~~~~~g~~~~~~---l~~~l~ 98 (101)
T TIGR01068 80 EVDRSVGALPKAA---LKQLIN 98 (101)
T ss_pred EeeeecCCCCHHH---HHHHHH
Confidence 54 4556654222 555554
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-13 Score=101.61 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=68.0
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE---c----ChhhhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI---Q----DPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i---~----~~~~~~~~~i~~~Pti~~~~ 269 (346)
+.+++.++++++++|.||++||++|+.+.+.+ .++++.+.+ ++.++.+ . ...++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 46778888999999999999999999999988 578888875 7888877 2 46789999999999999998
Q ss_pred --CCe-EEEeecCccc
Q psy160 270 --NGN-PLIFEGENKI 282 (346)
Q Consensus 270 --~g~-~~~y~g~~~~ 282 (346)
+|+ ..++.|..+.
T Consensus 81 ~~~g~~~~~~~G~~~~ 96 (104)
T cd02953 81 PGGEPEPLRLPGFLTA 96 (104)
T ss_pred CCCCCCCcccccccCH
Confidence 566 4556777653
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=106.69 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=70.2
Q ss_pred CcEEEccH-HHHHHHHhcc---ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELITR-VMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~~-~~~~~~~~~~---~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
..+..++. ++|.+.+... .+++|.||++||++|+.+.|.+.++|..+. .+.|++| +...++.+|+|.++||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCEE
Confidence 56777877 9998876543 389999999999999999999999999985 6899999 22378999999999999
Q ss_pred EEEeCCeEEE
Q psy160 266 VYFRNGNPLI 275 (346)
Q Consensus 266 ~~~~~g~~~~ 275 (346)
++|++|+.+.
T Consensus 140 llyk~G~~v~ 149 (175)
T cd02987 140 LVYKGGELIG 149 (175)
T ss_pred EEEECCEEEE
Confidence 9999998653
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG1731|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-13 Score=124.99 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=113.7
Q ss_pred ccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC-----ChhhHHhhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA-----DPRYARKWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~-----~~~l~~~~~i~~ 156 (346)
..+.|.+|+.++|...+..+ +.++|.||++|||||++++|.|+++|+.+.+= -+.++.+| +..+|++|+|.+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 34789999999999988665 48999999999999999999999999998431 14455555 788999999999
Q ss_pred cceEEEEecCC-c----ceecCCcchhHHHHHHHhhcc-----------ccC--cEEEc-cHHHHHHHHh-ccceEEEEE
Q psy160 157 LPAVVYFRHRF-P----SIYRGDLSEEEEVLQWLITQK-----------TED--RIELI-TRVMLETMVE-ETQYLAVYF 216 (346)
Q Consensus 157 ~Ptl~~~~~g~-~----~~y~g~~~~~~~i~~fi~~~~-----------~~~--~v~~l-~~~~~~~~~~-~~~~~lv~F 216 (346)
||+|.+|..+. . ..+.|+.... ++.+.+.+.. -|. .+..- +.+.+.+-+. ....+.|.|
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~-ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~ 195 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPS-EIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF 195 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchh-hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence 99999997642 1 2345544323 4555544311 121 11111 1222322222 233555656
Q ss_pred EcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 217 YKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 217 ~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
-.... .=.++.+-..+....+.+..+ ....+.+ ++++.+|+.+++++|+..
T Consensus 196 e~~~s------~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q 249 (606)
T KOG1731|consen 196 ETEPS------DLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ 249 (606)
T ss_pred ecCCc------ccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccc
Confidence 33211 112333333332223444433 3334445 889999999999999743
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=96.99 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=70.2
Q ss_pred HHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-cceecCCc
Q psy160 100 LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIYRGDL 175 (346)
Q Consensus 100 ~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~ 175 (346)
+.+.+++++++|+++||+.|+.+.|.++++++.+.+ ++.+..+| .++++.+++|.++||+++|++|+ ...+.|..
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 345668899999999999999999999999988754 36677665 67899999999999999999887 44577877
Q ss_pred chhHHHHHHHh
Q psy160 176 SEEEEVLQWLI 186 (346)
Q Consensus 176 ~~~~~i~~fi~ 186 (346)
..+ ++.+|++
T Consensus 88 ~~~-~~~~~l~ 97 (97)
T cd02949 88 MKS-EYREFIE 97 (97)
T ss_pred cHH-HHHHhhC
Confidence 744 7888763
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >KOG0907|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=97.30 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=65.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-cceecCCcchhH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIYRGDLSEEE 179 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~ 179 (346)
++.++|.|||+||++|+.+.|.+.+++.++.+ +.|.++| ..+++++++|+..||+.+|++|+ ...+-|... .
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~-~- 96 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK-A- 96 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH-H-
Confidence 47889999999999999999999999999866 7777766 48899999999999999999998 455777655 2
Q ss_pred HHHHHHh
Q psy160 180 EVLQWLI 186 (346)
Q Consensus 180 ~i~~fi~ 186 (346)
.+.+.+.
T Consensus 97 ~l~~~i~ 103 (106)
T KOG0907|consen 97 ELEKKIA 103 (106)
T ss_pred HHHHHHH
Confidence 4555544
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=97.42 Aligned_cols=76 Identities=12% Similarity=0.297 Sum_probs=63.9
Q ss_pred HHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 94 RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 94 ~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
.+.+++.+. ++++++|.|+++||++|+.+.|.++++|+++.+. +.|..+| .++++++|+|...||+++|++|++
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356666665 4689999999999999999999999999998653 5566655 789999999999999999999985
Q ss_pred ce
Q psy160 169 SI 170 (346)
Q Consensus 169 ~~ 170 (346)
..
T Consensus 81 ~~ 82 (114)
T cd02986 81 MK 82 (114)
T ss_pred EE
Confidence 54
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=103.63 Aligned_cols=95 Identities=16% Similarity=0.280 Sum_probs=71.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c---ChhhhhhCCCccccEEEEEe-CCeE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q---DPQLAKRYSIKTFPALVYFR-NGNP 273 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~---~~~~~~~~~i~~~Pti~~~~-~g~~ 273 (346)
..+++.+..+++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.+ + ...++++|+|+++|++++|. +|+.
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 45667777889999999999999999999999999999875 5666665 2 24789999999999999995 7875
Q ss_pred E-EeecCccccc-cchhhhhhhcc
Q psy160 274 L-IFEGENKILK-GTYIGTYISTK 295 (346)
Q Consensus 274 ~-~y~g~~~~~~-~~~~~~~i~~~ 295 (346)
+ .+.|....++ ...+..+++..
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 5 4667654322 22344444433
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=100.15 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=64.1
Q ss_pred CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-ChhhHHhhCCCCcceEE-EEecC
Q psy160 93 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-DPRYARKWGVTKLPAVV-YFRHR 166 (346)
Q Consensus 93 ~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~~l~~~~~i~~~Ptl~-~~~~g 166 (346)
+.+++++.+. .+++++|.|||+||++|+.+.|.++++++.+.+. +.++++ | .++++++|+|++.||++ +|++|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 4788888885 4578999999999999999999999999998653 444554 4 78999999999776666 89888
Q ss_pred C-cce-ecC
Q psy160 167 F-PSI-YRG 173 (346)
Q Consensus 167 ~-~~~-y~g 173 (346)
+ ... ..|
T Consensus 89 ~~~vd~~tG 97 (142)
T PLN00410 89 HIMIDLGTG 97 (142)
T ss_pred eEEEEEecc
Confidence 7 433 345
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-12 Score=94.73 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=65.9
Q ss_pred HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-EeecCc
Q psy160 205 MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 205 ~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~-~y~g~~ 280 (346)
+.+.+++++|.|+++||++|+.+.|.++++++++.+ ++.++.+ .+++++++++|.++|++++|++|+.+ .+.|..
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 466788999999999999999999999999999875 6888888 57789999999999999999999754 356665
Q ss_pred c
Q psy160 281 K 281 (346)
Q Consensus 281 ~ 281 (346)
+
T Consensus 88 ~ 88 (97)
T cd02949 88 M 88 (97)
T ss_pred c
Confidence 4
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=98.08 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC---cce
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF---PSI 170 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~---~~~ 170 (346)
+.+.+.+...++|.||++||++|+.+.|.+++++..... +.+..+| .+.++.+|+|.+.||+++|++|. ...
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~--i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK--LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCc--eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 444455566788999999999999999999999987633 5555554 78899999999999999998754 346
Q ss_pred ecCCcchhHHHHHHHhh
Q psy160 171 YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 y~g~~~~~~~i~~fi~~ 187 (346)
|.|..... ++.+|+..
T Consensus 93 ~~G~~~~~-el~~~i~~ 108 (113)
T cd02975 93 YYGLPAGY-EFASLIED 108 (113)
T ss_pred EEecCchH-HHHHHHHH
Confidence 88876644 78888764
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-12 Score=92.27 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=72.0
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC-ccee
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF-PSIY 171 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~-~~~y 171 (346)
+|++.+..+++++++||++||++|..+.+.+.++++. ..++.++.++ ...+++++++.++|++++|++|+ ...+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 5677777779999999999999999999999999987 3346666655 57899999999999999999887 4557
Q ss_pred cCCcchhHHHHHHH
Q psy160 172 RGDLSEEEEVLQWL 185 (346)
Q Consensus 172 ~g~~~~~~~i~~fi 185 (346)
.|..+ .+.|.+|+
T Consensus 80 ~g~~~-~~~l~~~i 92 (93)
T cd02947 80 VGADP-KEELEEFL 92 (93)
T ss_pred ecCCC-HHHHHHHh
Confidence 78766 34788776
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=104.07 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=70.7
Q ss_pred cCceeecCH-HHHHHHHhcCC---cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCCh--hhHHhhCCCCcce
Q psy160 86 KNEIEEVNR-RMLDKLLEENE---FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP--RYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~~-~~~~~~~~~~~---~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~--~l~~~~~i~~~Pt 159 (346)
.+.+.+++. ++|.+.+.... +++|.||++||++|+.+.|.++++|..+. .+.|++++.. .++.+|+|...||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhCCCCCCCE
Confidence 468889988 99999886543 89999999999999999999999999875 3788887733 6899999999999
Q ss_pred EEEEecCCcc
Q psy160 160 VVYFRHRFPS 169 (346)
Q Consensus 160 l~~~~~g~~~ 169 (346)
+++|++|+.+
T Consensus 139 lllyk~G~~v 148 (175)
T cd02987 139 LLVYKGGELI 148 (175)
T ss_pred EEEEECCEEE
Confidence 9999999844
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=95.39 Aligned_cols=78 Identities=18% Similarity=0.407 Sum_probs=63.6
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe---EEE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN---PLI 275 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~---~~~ 275 (346)
+.+.+.....++|.|+++||++|+.+.|.+++++..+. .+.+..+ .+++++++|+|++.||+++|++|. .+.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 44445566678888999999999999999999998863 5777777 678999999999999999999763 346
Q ss_pred eecCcc
Q psy160 276 FEGENK 281 (346)
Q Consensus 276 y~g~~~ 281 (346)
|.|-..
T Consensus 93 ~~G~~~ 98 (113)
T cd02975 93 YYGLPA 98 (113)
T ss_pred EEecCc
Confidence 777554
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=103.25 Aligned_cols=86 Identities=22% Similarity=0.371 Sum_probs=70.9
Q ss_pred cCcEEEccHHHHHHH-Hhcc--ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEE
Q psy160 191 EDRIELITRVMLETM-VEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~-~~~~--~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~ 267 (346)
-+.+..++.++|... .+.+ .+++|.||++||++|+.|.|.|++||.++. .+.|+++.....+..|++.+.||+++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTlli 158 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTILV 158 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEEE
Confidence 357778888888864 4433 489999999999999999999999999986 58999995445578999999999999
Q ss_pred EeCCeEEE-eec
Q psy160 268 FRNGNPLI-FEG 278 (346)
Q Consensus 268 ~~~g~~~~-y~g 278 (346)
|++|+.+. +.|
T Consensus 159 yk~G~~v~~ivG 170 (192)
T cd02988 159 YRNGDIVKQFIG 170 (192)
T ss_pred EECCEEEEEEeC
Confidence 99998553 444
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=102.20 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=71.1
Q ss_pred ccCceeecCHHHHHHHHhc-C--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEE
Q psy160 85 IKNEIEEVNRRMLDKLLEE-N--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVV 161 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~-~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~ 161 (346)
..+.+.+++.++|...+.. + .+++|.||++||++|+.+.|.|+++|..+. .+.|++++....+.+|+|+..||++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~~~~~~i~~lPTll 157 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQCIPNYPDKNLPTIL 157 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHhhCCCCCCCEEE
Confidence 3468999999999876543 3 378999999999999999999999999975 3889999866677899999999999
Q ss_pred EEecCCcc
Q psy160 162 YFRHRFPS 169 (346)
Q Consensus 162 ~~~~g~~~ 169 (346)
+|++|+.+
T Consensus 158 iyk~G~~v 165 (192)
T cd02988 158 VYRNGDIV 165 (192)
T ss_pred EEECCEEE
Confidence 99999843
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=91.76 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=73.0
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--CcceEEEEec--CCc
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KLPAVVYFRH--RFP 168 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~Ptl~~~~~--g~~ 168 (346)
++......+.++++.|+++||++|+.+.|.++++|+++++. +.|+.+| ++.+++.+||. ++|+++++++ |..
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence 34443334678999999999999999999999999999754 8888877 56799999999 9999999998 666
Q ss_pred ceecCCc-chhHHHHHHHhh
Q psy160 169 SIYRGDL-SEEEEVLQWLIT 187 (346)
Q Consensus 169 ~~y~g~~-~~~~~i~~fi~~ 187 (346)
+.+.+.. + .++|.+|+.+
T Consensus 83 ~~~~~~~~~-~~~l~~fi~~ 101 (103)
T cd02982 83 YLMPEEELT-AESLEEFVED 101 (103)
T ss_pred cCCCccccC-HHHHHHHHHh
Confidence 6665543 4 4589999875
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=87.35 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=59.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.||++||++|+.+.|.+++++++++. .+.++++++.+.+.+|++.+.||+++ +|..+ +.|.....+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHHHHh
Confidence 579999999999999999999998742 37888999888899999999999999 77655 778544434666664
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=93.23 Aligned_cols=86 Identities=15% Similarity=0.282 Sum_probs=66.4
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C-----------hhhhhhCC---
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D-----------PQLAKRYS--- 258 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~-----------~~~~~~~~--- 258 (346)
+..++.+++.+.+++++..+|+|+++||++|+.+.|.+++++++.+ ..+..+.++ + .++.++|+
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-CcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 4567888999999999999999999999999999999999999843 245555552 1 13446655
Q ss_pred -CccccEEEEEeCCeEEE-eecCc
Q psy160 259 -IKTFPALVYFRNGNPLI-FEGEN 280 (346)
Q Consensus 259 -i~~~Pti~~~~~g~~~~-y~g~~ 280 (346)
|.+.||+++|++|+.+. ..|..
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~ 110 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSS 110 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCC
Confidence 55699999999998665 44643
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >KOG0908|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=101.65 Aligned_cols=84 Identities=18% Similarity=0.365 Sum_probs=69.2
Q ss_pred EEEccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 194 IELITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 194 v~~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+..-+..+|+.-+. ..+.++|.|+|.||+||+.+.|.|+.++.+|. +..|+++ .....+..+||...||+++|
T Consensus 4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 33445677876443 46799999999999999999999999999997 5788888 56778889999999999999
Q ss_pred eCCeEEE-eecC
Q psy160 269 RNGNPLI-FEGE 279 (346)
Q Consensus 269 ~~g~~~~-y~g~ 279 (346)
++|..+. +.|.
T Consensus 82 ~ng~kid~~qGA 93 (288)
T KOG0908|consen 82 RNGVKIDQIQGA 93 (288)
T ss_pred ecCeEeeeecCC
Confidence 9997654 5564
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-11 Score=87.45 Aligned_cols=79 Identities=25% Similarity=0.581 Sum_probs=66.6
Q ss_pred HHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE-EEe
Q psy160 201 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP-LIF 276 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~-~~y 276 (346)
++++.++.+++++|.||++||++|..+.+.+.++++. .+ ++.++.+ .+..+++.|++.++|++++|++|+. ..+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4667777779999999999999999999999999988 33 6888887 4688999999999999999999974 346
Q ss_pred ecCcc
Q psy160 277 EGENK 281 (346)
Q Consensus 277 ~g~~~ 281 (346)
.|..+
T Consensus 80 ~g~~~ 84 (93)
T cd02947 80 VGADP 84 (93)
T ss_pred ecCCC
Confidence 66554
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=91.89 Aligned_cols=76 Identities=8% Similarity=0.123 Sum_probs=64.0
Q ss_pred ccHHHHHHHHhc--cceEEEEEEc-------CCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--------ChhhhhhC
Q psy160 197 ITRVMLETMVEE--TQYLAVYFYK-------LNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------DPQLAKRY 257 (346)
Q Consensus 197 l~~~~~~~~~~~--~~~~lv~F~~-------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------~~~~~~~~ 257 (346)
-+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++.++.+ ++.|+++ + +.++.+.+
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhcc
Confidence 355777777665 5799999999 9999999999999999999885 6778887 2 35889999
Q ss_pred CCc-cccEEEEEeCCeE
Q psy160 258 SIK-TFPALVYFRNGNP 273 (346)
Q Consensus 258 ~i~-~~Pti~~~~~g~~ 273 (346)
+|. ++||+++|++|+.
T Consensus 86 ~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR 102 (119)
T ss_pred CcccCCCEEEEEcCCce
Confidence 998 9999999987753
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >KOG0908|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=99.80 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=78.0
Q ss_pred eeec-CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEV-NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l-~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
|+.+ ++.+|..-+... +.++|.|+|.||++|+.+.|.|+.++.++.+ ..|.++| .+..+..+||+..||+++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 3444 477888877654 5899999999999999999999999999854 6677776 678899999999999999
Q ss_pred EecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|..+ .++|.-. ..|.+.+.++.
T Consensus 81 f~ng~kid~~qGAd~--~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADA--SGLEEKVAKYA 106 (288)
T ss_pred EecCeEeeeecCCCH--HHHHHHHHHHh
Confidence 9999854 4888643 35666666654
|
|
| >KOG1731|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=112.49 Aligned_cols=160 Identities=11% Similarity=0.220 Sum_probs=92.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhccc-C-CeEEEcC-----ChHHHHhcCCCCCCeEEEEeCCce-----eeecCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQY-G-IDMVKIS-----DTEAAAKYNIINLPSLVYFRKQVP-----LLYDGDLF 68 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~-~-i~~~~~~-----~~~~c~~~~i~~~Ptl~~f~~~~~-----~~y~G~~~ 68 (346)
|+||++|||||++|+|.|+++|+++..- . +.++.+| +.++|.+++|++||++.+|..+.. ..+.|...
T Consensus 62 VEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~ 141 (606)
T KOG1731|consen 62 VEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVI 141 (606)
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcc
Confidence 6899999999999999999999999432 2 2222332 689999999999999999986421 23455433
Q ss_pred CHHHHHHHHhc--------cCCcc--ccCceeecC-HHHHHHHHhcC-CcEEEEE-ECCCChhHHHHHHHHHHHHhhc--
Q psy160 69 DEEKILTWLTS--------QDVFE--IKNEIEEVN-RRMLDKLLEEN-EFVTVFF-YETDHKDSVKVLERLEKIDGET-- 133 (346)
Q Consensus 69 ~~~~i~~~i~~--------~~~p~--~~~~v~~l~-~~~~~~~~~~~-~~~lv~F-~~~~C~~c~~~~~~~~~~a~~~-- 133 (346)
. .++.+.+.. +..|. .=..+.+.+ .+.+.+-+.+. ..+-+.| ..+. .-.|+.+-..+
T Consensus 142 ~-~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~ 213 (606)
T KOG1731|consen 142 P-SEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETEPS-------DLGWANLLNDLPS 213 (606)
T ss_pred h-hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecCCc-------ccHHHHHHhhccC
Confidence 3 244443322 11210 001222222 22233322222 3444445 3322 12344444444
Q ss_pred cCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcc
Q psy160 134 DNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 134 ~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
+..++..+... ...+.. +++...|+..+|++|+..
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q 249 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQ 249 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCccc
Confidence 33334444433 223444 899999999999999843
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=92.17 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHH---HHHhhccCCCcEEEEeC--C--------------hhhHHhhCC
Q psy160 95 RMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLE---KIDGETDNMDITFVKMA--D--------------PRYARKWGV 154 (346)
Q Consensus 95 ~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~---~~a~~~~~~~i~~~~~~--~--------------~~l~~~~~i 154 (346)
+.+++..+++ ++++|.||++||++|+++.|.+. .+.+.+.+ ++.++.++ . ..++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 5567778888 99999999999999999999875 44444432 35555443 2 578999999
Q ss_pred CCcceEEEEecC--C-cceecCCcchhHHHHHHHhhc
Q psy160 155 TKLPAVVYFRHR--F-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 155 ~~~Ptl~~~~~g--~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++||+++|.++ + ...+.|..+.+ .+.++++..
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~-~~~~~l~~~ 118 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPD-EFLAYLEYV 118 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHH-HHHHHHHHH
Confidence 999999999874 5 34578877644 676666553
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=84.00 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=60.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
|.||++||++|+.+.|.++++++++.. .+.++++++.+.+.+||+.+.||+++ +|+.. +.|.....+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVTDMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHHHHh
Confidence 789999999999999999999998743 48899999888899999999999999 77654 778654444677665
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=88.73 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=61.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--cccEEEEEeC--CeEEEeecC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFRN--GNPLIFEGE 279 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~Pti~~~~~--g~~~~y~g~ 279 (346)
++++++.|+++||++|+.+.|.++++|+++++ .+.|+.+ .++.+++.|++. ++|+++++++ |+...+.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcc
Confidence 57899999999999999999999999999997 7999998 556799999999 9999999998 654444443
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=91.35 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=63.0
Q ss_pred HHHHHHHhcc-ceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE--c--------------ChhhhhhCCC
Q psy160 200 VMLETMVEET-QYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI--Q--------------DPQLAKRYSI 259 (346)
Q Consensus 200 ~~~~~~~~~~-~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i--~--------------~~~~~~~~~i 259 (346)
+.+++.++++ ++++|.||++||++|+.+.+.+. .+.+.+++ ++.++.+ + ..+++.+|+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 4566778888 99999999999999999999885 55555554 5667666 2 2578999999
Q ss_pred ccccEEEEEeC--CeEE-EeecCcc
Q psy160 260 KTFPALVYFRN--GNPL-IFEGENK 281 (346)
Q Consensus 260 ~~~Pti~~~~~--g~~~-~y~g~~~ 281 (346)
+++||+++|.+ |+.+ ++.|..+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCC
Confidence 99999999986 4644 4667654
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=82.54 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=61.6
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
.+..|+++||++|+.+.|.++++++.++. .+.+..+| ++++++++|+.++||+++ +|+ ..+.|..+.+ ++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~-~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKE-ELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHH-HHHH
Confidence 46799999999999999999999988753 26666665 778999999999999986 665 4778877644 7888
Q ss_pred HHhh
Q psy160 184 WLIT 187 (346)
Q Consensus 184 fi~~ 187 (346)
++..
T Consensus 77 ~l~~ 80 (82)
T TIGR00411 77 AIKK 80 (82)
T ss_pred HHHh
Confidence 7764
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=88.05 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=61.7
Q ss_pred CHHHHHHHHhc--CCcEEEEEEC-------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHHhhC
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYARKWG 153 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~~~~ 153 (346)
+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++..+.. ++.|+.+| +..++.+++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccC
Confidence 46778888876 5789999999 9999999999999999998852 26666654 258999999
Q ss_pred CC-CcceEEEEecCC
Q psy160 154 VT-KLPAVVYFRHRF 167 (346)
Q Consensus 154 i~-~~Ptl~~~~~g~ 167 (346)
|. +.||+++|++|.
T Consensus 87 I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 LTTGVPTLLRWKTPQ 101 (119)
T ss_pred cccCCCEEEEEcCCc
Confidence 98 999999997765
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=105.95 Aligned_cols=177 Identities=14% Similarity=0.219 Sum_probs=127.9
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc-CChHHHHhcCCCCCCeEEEEe-CCc--eeeecCCCCCHHHHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKI-SDTEAAAKYNIINLPSLVYFR-KQV--PLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~c~~~~i~~~Ptl~~f~-~~~--~~~y~G~~~~~~~i~~~i 77 (346)
.|+.+.|..|.++...++++++.-++..+.+... ++.++..+|+|...|++.+++ ++. -+.|.|-+..+ ++..|+
T Consensus 372 ~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~-Ef~s~i 450 (555)
T TIGR03143 372 LFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH-ELNSFI 450 (555)
T ss_pred EEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH-hHHHHH
Confidence 5778899999999888888887655433333333 367899999999999999985 443 37899988775 766666
Q ss_pred hccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCC
Q psy160 78 TSQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVT 155 (346)
Q Consensus 78 ~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~ 155 (346)
..-... +..-..|+++..+.+-.=++++ +-.|.+++|++|.+....+.+++....+....++.+. .++++++|+|.
T Consensus 451 ~~i~~~--~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~ 528 (555)
T TIGR03143 451 LALYNA--AGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIM 528 (555)
T ss_pred HHHHHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCce
Confidence 542221 1123356676666665444554 6667899999999999999999987544444455543 88999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+.|++++ ||+ ..+.|..+ .+++++++
T Consensus 529 ~vP~~~i--~~~-~~~~G~~~-~~~~~~~~ 554 (555)
T TIGR03143 529 SVPAIVV--DDQ-QVYFGKKT-IEEMLELI 554 (555)
T ss_pred ecCEEEE--CCE-EEEeeCCC-HHHHHHhh
Confidence 9999988 454 45778875 55888876
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-10 Score=80.26 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=55.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+..|+++||++|+.+.+.++++++.++. .+.+..+ .++++++++++.++|++++ +|+ ..+.|..+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~ 70 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPT 70 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCC
Confidence 5679999999999999999999999875 6888887 6788999999999999986 676 46778764
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-10 Score=86.51 Aligned_cols=74 Identities=12% Similarity=0.316 Sum_probs=54.6
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE-c-ChhhhhhCCCcc--ccEEEEEe-CCeE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI-Q-DPQLAKRYSIKT--FPALVYFR-NGNP 273 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i-~-~~~~~~~~~i~~--~Pti~~~~-~g~~ 273 (346)
+.+....+++++++|.|||+||++|+.+.|.+.+.+..... .++..+.+ . .......|++.+ +||+++|. +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 33444566789999999999999999999999998765432 13444455 2 224567888876 99999995 7764
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=83.36 Aligned_cols=75 Identities=4% Similarity=0.125 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC--ChhhHHhhCCCC--cceEEEEe-cCC
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKMA--DPRYARKWGVTK--LPAVVYFR-HRF 167 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~--~~~l~~~~~i~~--~Ptl~~~~-~g~ 167 (346)
.+.++....++++++|.||++||++|+.+.|.+.+.+.... ..++..++++ ......+|++.+ +||+++|. +|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 34455556677899999999999999999999999776542 2245555665 234567899986 99999996 676
Q ss_pred c
Q psy160 168 P 168 (346)
Q Consensus 168 ~ 168 (346)
.
T Consensus 89 ~ 89 (117)
T cd02959 89 V 89 (117)
T ss_pred C
Confidence 3
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=98.36 Aligned_cols=171 Identities=16% Similarity=0.298 Sum_probs=124.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe-cCC--cceecCCcchh
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR-HRF--PSIYRGDLSEE 178 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~-~g~--~~~y~g~~~~~ 178 (346)
+..++.|+.+.|..|.++...+++++..-.+ |.+...| +.+++++|++...|++.+.. +|+ .++|.|-..-.
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~--i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~ 444 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFASLSEK--LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGH 444 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHHhcCCc--EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccH
Confidence 4468889999999999888888888854333 5544433 67899999999999999995 454 47898876644
Q ss_pred HHHHHHHhhccccC-cEEEccHHHHHHHHhccceEEE-EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh
Q psy160 179 EEVLQWLITQKTED-RIELITRVMLETMVEETQYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK 255 (346)
Q Consensus 179 ~~i~~fi~~~~~~~-~v~~l~~~~~~~~~~~~~~~lv-~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~ 255 (346)
++-.|+.....-+ .-..++.+..+.+.+=++++-| .|.+++|++|......+.+++....+....+..+ ..+++++
T Consensus 445 -Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 523 (555)
T TIGR03143 445 -ELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKD 523 (555)
T ss_pred -hHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHH
Confidence 6777776543211 2235677766666554556544 4689999999999999999998865334455555 7889999
Q ss_pred hCCCccccEEEEEeCCeEEEeecCcc
Q psy160 256 RYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 256 ~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+|+|.+.|++++ +|+ +.+.|..+
T Consensus 524 ~~~v~~vP~~~i--~~~-~~~~G~~~ 546 (555)
T TIGR03143 524 EYGIMSVPAIVV--DDQ-QVYFGKKT 546 (555)
T ss_pred hCCceecCEEEE--CCE-EEEeeCCC
Confidence 999999999977 555 34667654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-09 Score=74.39 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=43.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee-eecCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL-LYDGD 66 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~-~y~G~ 66 (346)
|+||++||++|+.+.|.|++++ +.++++| +.+++.+|+|.++||++ +|..+ .+.|.
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 5899999999999999998663 2345554 57999999999999988 45433 45674
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-09 Score=73.54 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc-ceecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP-SIYRGD 174 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~-~~y~g~ 174 (346)
+++||++||++|+.+.|.+++++ +.++++| ..+++++|+|.++||++ +|+. -.+.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999997664 3355555 67899999999999998 4443 356674
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=80.88 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHH---HHhhccCCCcEEEEe--CC---------------------hhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEK---IDGETDNMDITFVKM--AD---------------------PRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~---~a~~~~~~~i~~~~~--~~---------------------~~l~~~~~i~~ 156 (346)
++++.+++|++|||++|+++.+++.. +...++. ++.++.+ +. ..+++++||++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 45789999999999999999999885 4444432 2444443 22 34889999999
Q ss_pred cceEEEEe-cCC-cceecCCcchhHHHHHHH
Q psy160 157 LPAVVYFR-HRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 157 ~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi 185 (346)
+||++++. +|+ ...+.|..+.+ +|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~-~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPE-ELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HH-HHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHH-HHHhhC
Confidence 99999996 577 44588988854 777664
|
... |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=99.77 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=71.3
Q ss_pred CHHHHHHHHh----cCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcc
Q psy160 93 NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 158 (346)
Q Consensus 93 ~~~~~~~~~~----~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~P 158 (346)
+.+++++.++ ++++++|.||++||++|+.+.+.. .++.+.+++ +.++++| ..+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 4677777664 357999999999999999998874 566666643 5666554 35789999999999
Q ss_pred eEEEEe-cCCc---ceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFR-HRFP---SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~-~g~~---~~y~g~~~~~~~i~~fi~~~ 188 (346)
|+++|. +|+. .++.|..+.+ ++.+++++.
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~~~-~f~~~L~~~ 569 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMDAA-AFAAHLRQL 569 (571)
T ss_pred EEEEECCCCCCcccccccCCCCHH-HHHHHHHHh
Confidence 999997 6765 4678888744 888888764
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=77.79 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=56.8
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHH-HH--HHHhhcCcCceEEEEE---cChhhhh--------hCCCcccc
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEG-LE--KVDDECDIYGIHMVKI---QDPQLAK--------RYSIKTFP 263 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~-~~--~la~~~~~~~i~~~~i---~~~~~~~--------~~~i~~~P 263 (346)
+.+.+++..+++++++|.|+++||++|+.|.+. +. ++++.+.. ++.++++ +.+++++ .|++.++|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 456777788899999999999999999999763 33 55665543 5666676 4445544 36899999
Q ss_pred EEEEEe-CCeEE
Q psy160 264 ALVYFR-NGNPL 274 (346)
Q Consensus 264 ti~~~~-~g~~~ 274 (346)
+++++. +|+++
T Consensus 83 t~vfl~~~G~~~ 94 (124)
T cd02955 83 LNVFLTPDLKPF 94 (124)
T ss_pred EEEEECCCCCEE
Confidence 999995 56654
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=68.40 Aligned_cols=61 Identities=26% Similarity=0.498 Sum_probs=48.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeec
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEG 278 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g 278 (346)
++.|+++||++|+.+.+.+++++.... ++.+..+ +++++++++++.++|++++ +|+ ..|.|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~-~~~~g 66 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK-VEFVG 66 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE-EEEec
Confidence 577999999999999999999987643 5666666 5678999999999999865 454 44544
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=76.30 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=56.0
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---ChhhHH--------hhCCCCc
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DPRYAR--------KWGVTKL 157 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~~l~~--------~~~i~~~ 157 (346)
-+++.+....+++++++|.|+++||+.|+.|.+. | .++++.+.. ++.++.+| .+++++ .||+.++
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3567788888889999999999999999999863 3 234444432 36666665 444544 3589999
Q ss_pred ceEEEEec-CCcc
Q psy160 158 PAVVYFRH-RFPS 169 (346)
Q Consensus 158 Ptl~~~~~-g~~~ 169 (346)
||++++.. |+++
T Consensus 82 Pt~vfl~~~G~~~ 94 (124)
T cd02955 82 PLNVFLTPDLKPF 94 (124)
T ss_pred CEEEEECCCCCEE
Confidence 99999975 6643
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=69.94 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=44.3
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
-++.|+++||++|+.+.+.+++++....+ +.+..+| ++++++++|+.+.||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPN--ISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCc--eEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 36899999999999999999999876433 5555444 678999999999999876
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=95.54 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=66.5
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------------C-ChhhHH
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------------A-DPRYAR 150 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------------~-~~~l~~ 150 (346)
.++++++|.|||+||++|++.+|.+++++++++..++.++.+ | ...+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 366899999999999999999999999999875333333211 1 456889
Q ss_pred hhCCCCcceEEEE-ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 151 KWGVTKLPAVVYF-RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~~~Ptl~~~-~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
.|+|.++||++++ ++|+. ..+.|....+ +|.++++..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~e-eL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEA-QALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHH-HHHHHHHHh
Confidence 9999999999766 56774 4578988744 899988843
|
|
| >KOG0913|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-09 Score=88.85 Aligned_cols=117 Identities=14% Similarity=0.272 Sum_probs=95.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.+|+.+++.. .|++.|++|||+.|+...+.|+..|.--.+..+.++.+ .++.+..+|-++..|||.-.+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 5667889999988764 58999999999999999999999998877667888877 799999999999999999999
Q ss_pred CCeEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCccch
Q psy160 270 NGNPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGAFQT 314 (346)
Q Consensus 270 ~g~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
+|.+-+|.|.|+..+ +..|+.......++-+....++..-.+
T Consensus 103 DGeFrrysgaRdk~d---fisf~~~r~w~~i~p~p~w~~p~S~~~ 144 (248)
T KOG0913|consen 103 DGEFRRYSGARDKND---FISFEEHREWQSIDPVPEWEKPDSTEM 144 (248)
T ss_pred ccccccccCcccchh---HHHHHHhhhhhccCCcchhcCCCchHH
Confidence 999999999997544 555666666666666666655554433
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-08 Score=86.70 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC------------hhhHHhhCCCCcceEEEEec-CCcc-
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------------PRYARKWGVTKLPAVVYFRH-RFPS- 169 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------------~~l~~~~~i~~~Ptl~~~~~-g~~~- 169 (346)
+++.+|.||++||++|+.+.|.+.++++++. ..+..+.+|. ..+++++||.++||++++.+ |..+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4789999999999999999999999999863 3355555542 46889999999999999986 4432
Q ss_pred -eecCCcchhHHHHHHHhhccc
Q psy160 170 -IYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~~~~ 190 (346)
...|..+ .++|.+.+.....
T Consensus 245 ~v~~G~~s-~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMS-ADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCC-HHHHHHHHHHHhc
Confidence 2457776 4478888766543
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-08 Score=97.35 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=62.8
Q ss_pred cHHHHHHHHh----ccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE--c-----ChhhhhhCCCcccc
Q psy160 198 TRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--Q-----DPQLAKRYSIKTFP 263 (346)
Q Consensus 198 ~~~~~~~~~~----~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~-----~~~~~~~~~i~~~P 263 (346)
+.+++++.++ ++++++|+||++||++|+.+.+.. .++.+.++ ++.++++ + +.+++++|++.++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 5577777543 368999999999999999998875 56767765 4666666 1 35789999999999
Q ss_pred EEEEEe-CCeE---EEeecCcc
Q psy160 264 ALVYFR-NGNP---LIFEGENK 281 (346)
Q Consensus 264 ti~~~~-~g~~---~~y~g~~~ 281 (346)
++++|+ +|+. .++.|..+
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~ 558 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMD 558 (571)
T ss_pred EEEEECCCCCCcccccccCCCC
Confidence 999996 7775 35667665
|
|
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-08 Score=78.43 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=51.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-------CceEEEEE--------------------------c--Chh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-------YGIHMVKI--------------------------Q--DPQ 252 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-------~~i~~~~i--------------------------~--~~~ 252 (346)
.+++++|.|||+||++|+...|.+.++.+.+++ .++.++.| . ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 458999999999999999999999988765532 13555554 0 124
Q ss_pred hhhhCCCccccEEEEEe-CCeEEEe
Q psy160 253 LAKRYSIKTFPALVYFR-NGNPLIF 276 (346)
Q Consensus 253 ~~~~~~i~~~Pti~~~~-~g~~~~y 276 (346)
+++.|++.++|+.+++. +|+.+.-
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 67788999999999996 6665533
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=76.51 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=51.0
Q ss_pred hccceEEEEEEcCCChhhHHHHHHHHH---HHhhcCcCceEEEEE--cC---------------------hhhhhhCCCc
Q psy160 207 EETQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI--QD---------------------PQLAKRYSIK 260 (346)
Q Consensus 207 ~~~~~~lv~F~~~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i--~~---------------------~~~~~~~~i~ 260 (346)
.+++++++.|+++||++|+.+.+.+.. +...++. ++.++.+ .. .++++.++|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 356899999999999999999998885 4444442 4555554 11 3588999999
Q ss_pred cccEEEEEe-CCeEE-EeecCccc
Q psy160 261 TFPALVYFR-NGNPL-IFEGENKI 282 (346)
Q Consensus 261 ~~Pti~~~~-~g~~~-~y~g~~~~ 282 (346)
++||++++. +|+.+ .+.|..+.
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--H
T ss_pred ccCEEEEEcCCCCEEEEecCCCCH
Confidence 999999995 78754 57787753
|
... |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=74.65 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=40.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------cChhhhhhCCCccccEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------~~~~~~~~~~i~~~Pti 265 (346)
..++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ ....+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 357999999999999999999999999888764 4555444 12234555555555543
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=75.69 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=60.1
Q ss_pred HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-------------hhhH-Hhh---CCCCcceEEEE
Q psy160 101 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-------------PRYA-RKW---GVTKLPAVVYF 163 (346)
Q Consensus 101 ~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-------------~~l~-~~~---~i~~~Ptl~~~ 163 (346)
+..++..+|.||++||++|++..|.+++++++++ ..+..+.+|. .... ..+ ++.++||.+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 3345677999999999999999999999998863 3344445542 2233 345 88999999999
Q ss_pred ec-CC-cc-eecCCcchhHHHHHHHhh
Q psy160 164 RH-RF-PS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 164 ~~-g~-~~-~y~g~~~~~~~i~~fi~~ 187 (346)
.. |. .. .+.|..+.+ ++.+.+.+
T Consensus 126 D~~G~~i~~~~~G~~s~~-~l~~~I~~ 151 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEA-ELANRMDE 151 (153)
T ss_pred eCCCCEEEEEeecccCHH-HHHHHHHH
Confidence 75 44 23 467888744 66666543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-08 Score=76.92 Aligned_cols=67 Identities=21% Similarity=0.436 Sum_probs=52.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE--c-C------------------------hhhhhhCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D------------------------PQLAKRYS 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~------------------------~~~~~~~~ 258 (346)
.+++++|.||++||++|+.+.|.+.++.+++.+. ++.++.+ + . ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3578999999999999999999999998887532 4555544 1 1 35678899
Q ss_pred CccccEEEEEe-CCeEE
Q psy160 259 IKTFPALVYFR-NGNPL 274 (346)
Q Consensus 259 i~~~Pti~~~~-~g~~~ 274 (346)
|.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999996 67654
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-08 Score=79.56 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=66.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------------------------ChhhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------------------------DPRYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------------------------~~~l~~~~~i~~~ 157 (346)
.+++++|.|+++||++|+...+.+.++++++.+.++.++.++ ...+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 457899999999999999999999999999865444444332 3467899999999
Q ss_pred ceEEEEe-cCCcc-eecCCcchhHHHHHHHhhc
Q psy160 158 PAVVYFR-HRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~-~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
|+++++. +|+.. .+.|..+.+ ++.+++.+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~-~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEE-QLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHH-HHHHHHHHh
Confidence 9998886 46633 578888744 788887653
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-08 Score=94.44 Aligned_cols=123 Identities=15% Similarity=0.294 Sum_probs=78.6
Q ss_pred hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhh
Q psy160 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAK 255 (346)
Q Consensus 207 ~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~ 255 (346)
+..++++|.|||+||++|+.+.|.+.+++++++..++.++.| .+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 367899999999999999999999999999886334444322 2445788
Q ss_pred hCCCccccEEEEE-eCCeEE-EeecCccccccchhhhhhhccCCC---CC-CcccCCCCCCccchhhHHhhcceeEEeec
Q psy160 256 RYSIKTFPALVYF-RNGNPL-IFEGENKILKGTYIGTYISTKAFS---LI-PFCFSEKHPGAFQTELVLRSLKIKIIGKC 329 (346)
Q Consensus 256 ~~~i~~~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (346)
.|+|.++|+++++ ++|+.+ .+.|..+.++ +..+++..+.. +. +-....+...-+ .......+.+.|+|
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~ee---L~a~Ie~~~~~~~~~~~~~~~~~~q~~d~---~~~~~~~~~~agGC 207 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQ---ALALIRNPNADLGSLKHSYYKPDGQKKDS---KIMNTRTIYLAGGC 207 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHH---HHHHHHHhhhhhHHhhhhhccccCCcccc---CCCCccEEEEecCC
Confidence 9999999999666 688764 4678775433 56666643321 11 000011111111 12234678888988
Q ss_pred ccccee
Q psy160 330 EDGVQK 335 (346)
Q Consensus 330 ~~~~~~ 335 (346)
==|++.
T Consensus 208 FWg~e~ 213 (521)
T PRK14018 208 FWGLEA 213 (521)
T ss_pred chhhHH
Confidence 655543
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-08 Score=74.98 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=58.1
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC---------------------CcEEEEeCChhhHHhhCCCCcceE
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM---------------------DITFVKMADPRYARKWGVTKLPAV 160 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~---------------------~i~~~~~~~~~l~~~~~i~~~Ptl 160 (346)
..+++++|.||++||++|..+.|.+.++++.+.-. .+.++.-.+..++++|+|.+.|++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 35588999999999999999999999888764211 011111124579999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHH
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~ 183 (346)
+++.++. ...+.|..+ .++|.+
T Consensus 98 ~vid~~gi~~~~~g~~~-~~~~~~ 120 (123)
T cd03011 98 VIVDPGGIVFVTTGVTS-EWGLRL 120 (123)
T ss_pred EEEcCCCeEEEEeccCC-HHHHHh
Confidence 9998655 334667666 335544
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.6e-08 Score=71.14 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=49.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE----------------------------cChhhhhhCCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI----------------------------QDPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i----------------------------~~~~~~~~~~i 259 (346)
+++++|.||++||++|+...|.+.++.++++ +.++.++.+ ....+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998 336887777 12346778888
Q ss_pred ccccEEEEEeC
Q psy160 260 KTFPALVYFRN 270 (346)
Q Consensus 260 ~~~Pti~~~~~ 270 (346)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999988853
|
... |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-08 Score=76.03 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=53.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE--c-C-------------------------hhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI--Q-D-------------------------PQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i--~-~-------------------------~~~~~~~ 257 (346)
.+++++|.||++||++|+...|.+.++++++++. ++.+..+ + . ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3589999999999999999999999998887642 4555544 1 1 1356679
Q ss_pred CCccccEEEEEe-CCeEEEeec
Q psy160 258 SIKTFPALVYFR-NGNPLIFEG 278 (346)
Q Consensus 258 ~i~~~Pti~~~~-~g~~~~y~g 278 (346)
+|.++|+++++. +|+.+..++
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999996 666554333
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >KOG0913|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-09 Score=86.47 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=89.3
Q ss_pred CccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 82 VFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 82 ~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
.|.....+..++++|...+++. -|+++|++|||+.|+.+.|+|+..|.--.+.++.++.+| ++-|.-+|=+...|
T Consensus 19 ~~~r~s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 19 TPRRSSKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred CccccceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 3444558889999999988654 599999999999999999999999987767777777776 88899999999999
Q ss_pred eEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
||.-.++|.--+|.|.++.. +++.|+...
T Consensus 97 tIYHvkDGeFrrysgaRdk~-dfisf~~~r 125 (248)
T KOG0913|consen 97 TIYHVKDGEFRRYSGARDKN-DFISFEEHR 125 (248)
T ss_pred eEEEeeccccccccCcccch-hHHHHHHhh
Confidence 99999999877899999955 899998765
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=69.21 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
++.-+..|+++||++|....+.+++++....+..+..++++ .++++.+|||.+.||+++ +|+ ..+.|..+ .++++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~-~~~~G~~~-~~e~~ 87 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE-LFGFGRMT-LEEIL 87 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE-EEEeCCCC-HHHHh
Confidence 35568999999999999999999999987654344444444 678999999999999975 665 34567554 33443
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >KOG0914|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-08 Score=81.76 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=72.7
Q ss_pred cccCceeec-CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--
Q psy160 84 EIKNEIEEV-NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT-- 155 (346)
Q Consensus 84 ~~~~~v~~l-~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~-- 155 (346)
.++..+.-+ +.+.+++.+..+ ..|+|.|++-|.+.|.++.|.+.+++.++......|+++| .++++.+|+|+
T Consensus 121 ~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 456777888 566667766655 5799999999999999999999999999977779999998 88999999986
Q ss_pred ----CcceEEEEecCCc
Q psy160 156 ----KLPAVVYFRHRFP 168 (346)
Q Consensus 156 ----~~Ptl~~~~~g~~ 168 (346)
..||+++|++|+.
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 6799999999873
|
|
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=75.54 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=51.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--C--cEEEEeC-C------------------------hhhHHhhC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--D--ITFVKMA-D------------------------PRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~--i~~~~~~-~------------------------~~l~~~~~ 153 (346)
.+++++|.||++||++|++..|.+.++++++... + +.++.+| . ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4578999999999999999999999998887432 3 3344443 1 35778999
Q ss_pred CCCcceEEEEe-cCCc
Q psy160 154 VTKLPAVVYFR-HRFP 168 (346)
Q Consensus 154 i~~~Ptl~~~~-~g~~ 168 (346)
|.++|+++++. +|+.
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 99999999997 5653
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=76.26 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-------CCcEEEEe--C--------------------------Chh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-------MDITFVKM--A--------------------------DPR 147 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-------~~i~~~~~--~--------------------------~~~ 147 (346)
++++++|.|+|+||++|++.+|.+.++++.+.+ .++.++.+ | ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 568999999999999999999999998775521 12333322 1 125
Q ss_pred hHHhhCCCCcceEEEEec-CCcce
Q psy160 148 YARKWGVTKLPAVVYFRH-RFPSI 170 (346)
Q Consensus 148 l~~~~~i~~~Ptl~~~~~-g~~~~ 170 (346)
++.+|++.++||++++.. |+...
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 788999999999999974 55433
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-07 Score=86.51 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=116.5
Q ss_pred ecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCC--ceeeecCCCCCHHHHHHHHhcc
Q psy160 3 INDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQ--VPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~--~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
++.+.|..|+++..-++++++..++ |.+...+.. ...|++.+.++| .-+.|.|-+..+ ++..|+..-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i 93 (517)
T PRK15317 25 ASLDDSEKSAELKELLEEIASLSDK--ITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGIPMGH-EFTSLVLAL 93 (517)
T ss_pred EEeCCCchHHHHHHHHHHHHHhCCc--eEEEEccCC--------CCCCEEEEEcCCccceEEEEecCccH-HHHHHHHHH
Confidence 3455799999998888888887643 443222211 346999998765 346799988775 777776543
Q ss_pred CCccccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC
Q psy160 81 DVFEIKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK 156 (346)
Q Consensus 81 ~~p~~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~ 156 (346)
... +..-..|+++..+.+-.=+ +..+..|+++.|++|......+.+++.... +|..-.+| +++++.+|+|.+
T Consensus 94 ~~~--~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~ 169 (517)
T PRK15317 94 LQV--GGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEARNIMA 169 (517)
T ss_pred HHh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcc
Confidence 221 1133456666666654434 445889999999999999999999887633 46655555 899999999999
Q ss_pred cceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.|++++ +|+ ..+.|.... +++++.+.+.
T Consensus 170 VP~~~i--~~~-~~~~g~~~~-~~~~~~~~~~ 197 (517)
T PRK15317 170 VPTVFL--NGE-EFGQGRMTL-EEILAKLDTG 197 (517)
T ss_pred cCEEEE--CCc-EEEecCCCH-HHHHHHHhcc
Confidence 999976 444 457788774 4888888764
|
|
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=74.54 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=51.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcE--EEEeCC--------------------------hhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DIT--FVKMAD--------------------------PRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~--~~~~~~--------------------------~~l~~~~ 152 (346)
.+++++|.|+++||++|+..+|.+.++++.++.. ++. ++.+|. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4688999999999999999999999998887432 333 334331 2456679
Q ss_pred CCCCcceEEEEe-cCCcc
Q psy160 153 GVTKLPAVVYFR-HRFPS 169 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~~~ 169 (346)
+|.++|+++++. +|+..
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999996 45543
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=71.12 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=76.1
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECC--CChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~--~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.++..+++.++......+++|-.. -++.+....-.+.++++++.+.++.++++| ++.++.+|||.++||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 345578888887777665555432 356777888889999999864446777665 889999999999999999999
Q ss_pred CCcc-eecCCcchhHHHHHHHhhccc
Q psy160 166 RFPS-IYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 166 g~~~-~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|+.. ...|..+.. .+.+++.+...
T Consensus 101 Gk~v~~i~G~~~k~-~l~~~I~~~L~ 125 (132)
T PRK11509 101 GNYRGVLNGIHPWA-ELINLMRGLVE 125 (132)
T ss_pred CEEEEEEeCcCCHH-HHHHHHHHHhc
Confidence 9954 577877754 89999887654
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=82.52 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=55.9
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc------------ChhhhhhCCCccccEEEEEeC-CeEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------DPQLAKRYSIKTFPALVYFRN-GNPLI 275 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------~~~~~~~~~i~~~Pti~~~~~-g~~~~ 275 (346)
+++++|.||++||++|+.+.|.+.++++++. ..+..+.++ +..+++++||.++|+++++++ |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999999999999999975 244444442 346889999999999999986 54332
Q ss_pred --eecCcc
Q psy160 276 --FEGENK 281 (346)
Q Consensus 276 --y~g~~~ 281 (346)
..|..+
T Consensus 245 ~v~~G~~s 252 (271)
T TIGR02740 245 PIGFGVMS 252 (271)
T ss_pred EEEeCCCC
Confidence 446554
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=68.44 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=48.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEe--C--------------------------ChhhHHhhCC
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKM--A--------------------------DPRYARKWGV 154 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~--~--------------------------~~~l~~~~~i 154 (346)
++++++.|+++||++|++..|.+.++.++++ +.++.++.+ | ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4688999999999999999999999999997 444655543 1 3457788899
Q ss_pred CCcceEEEEec
Q psy160 155 TKLPAVVYFRH 165 (346)
Q Consensus 155 ~~~Ptl~~~~~ 165 (346)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999988864
|
... |
| >KOG0914|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-08 Score=79.26 Aligned_cols=84 Identities=13% Similarity=0.341 Sum_probs=69.3
Q ss_pred cCcEEEc-cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCC-----
Q psy160 191 EDRIELI-TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSI----- 259 (346)
Q Consensus 191 ~~~v~~l-~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i----- 259 (346)
|..+..+ +.+.+++.++ ....|+|.||+.|.+.|....|.+.+|+.+|....++|+++ ..++.+.+|+|
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 4456666 4455555554 35689999999999999999999999999998767999998 68899999988
Q ss_pred -ccccEEEEEeCCeEE
Q psy160 260 -KTFPALVYFRNGNPL 274 (346)
Q Consensus 260 -~~~Pti~~~~~g~~~ 274 (346)
++.||+++|++|+.+
T Consensus 203 srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEV 218 (265)
T ss_pred cccCCeEEEEccchhh
Confidence 468999999999754
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-06 Score=80.65 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=110.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|.. .|+.|.++...+++++..-.+ |.+...+.. ...|++.+..+|+ .++|.|-..-. ++-
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~ 87 (517)
T PRK15317 20 PIELVASLD-DSEKSAELKELLEEIASLSDK--ITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGIPMGH-EFT 87 (517)
T ss_pred CEEEEEEeC-CCchHHHHHHHHHHHHHhCCc--eEEEEccCC--------CCCCEEEEEcCCccceEEEEecCccH-HHH
Confidence 334555655 799999888888888765333 544332211 3479999987665 57798876644 788
Q ss_pred HHHhhccc-cCcEEEccHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC
Q psy160 183 QWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257 (346)
Q Consensus 183 ~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 257 (346)
.|+..... ...-..++++..+.+.+-+++ -+..|.++.|++|......+.++|.... ++..-.+ ..++++++|
T Consensus 88 s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 88 SLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhc
Confidence 88766432 122335666666665543444 4667999999999999999999988644 5665555 789999999
Q ss_pred CCccccEEEEEeCCeEEEeecCcc
Q psy160 258 SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.+.|++++ +|+ ..+.|..+
T Consensus 166 ~v~~VP~~~i--~~~-~~~~g~~~ 186 (517)
T PRK15317 166 NIMAVPTVFL--NGE-EFGQGRMT 186 (517)
T ss_pred CCcccCEEEE--CCc-EEEecCCC
Confidence 9999999965 554 34677665
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=75.98 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=60.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcE---------------------E--EEeC-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDIT---------------------F--VKMA-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~---------------------~--~~~~-~~~l~~~~~i~~~P 158 (346)
.+++++|.||++||++|+++.|.+.++++. +..+. + +..| ...+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 568999999999999999999999988764 11111 1 1123 44677899999999
Q ss_pred eEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.+++ ++|+ ...+.|..+.+ ++.+++.+.
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~-~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNE-VWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHH-HHHHHHHHH
Confidence 66666 5677 45577887744 788877654
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-07 Score=71.00 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=40.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-C-----ChhhHHhhCCCCcceE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-A-----DPRYARKWGVTKLPAV 160 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-~-----~~~l~~~~~i~~~Ptl 160 (346)
++++++|.||++||++|+...|.++++++.+.+ ++.++.+ + ..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 467899999999999999999999999887633 2433332 1 2345566666666654
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=72.39 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=53.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEE-----------------------EEeC-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITF-----------------------VKMA-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~-----------------------~~~~-~~~l~~~~~i~~~P 158 (346)
++++++|.|+++||++|++..|.++++++... ..+.. +..| ...+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 36789999999999999999999999987652 11111 1122 45688899999999
Q ss_pred eEEEE-ecCC-cceecCCcc
Q psy160 159 AVVYF-RHRF-PSIYRGDLS 176 (346)
Q Consensus 159 tl~~~-~~g~-~~~y~g~~~ 176 (346)
+.+++ ++|+ ...+.|..+
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred eEEEECCCceEEEEEeccCC
Confidence 66655 5677 456788876
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=75.92 Aligned_cols=75 Identities=13% Similarity=0.376 Sum_probs=59.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------ChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------DPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------~~~~~~~~~i~~~ 262 (346)
.+++++|.||++||++|+...+.+.++++++.+.++.++.+ + +..+++.|++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 45789999999999999999999999999987545666666 1 2466889999999
Q ss_pred cEEEEEe-CCeEE-EeecCccc
Q psy160 263 PALVYFR-NGNPL-IFEGENKI 282 (346)
Q Consensus 263 Pti~~~~-~g~~~-~y~g~~~~ 282 (346)
|+++++. +|+.+ .+.|..+.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~ 161 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTE 161 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCH
Confidence 9988885 67654 46777653
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=74.16 Aligned_cols=76 Identities=9% Similarity=0.269 Sum_probs=51.5
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC-------------hHHH-Hhc---CCCCCCeEEEEeC-Cce-e
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD-------------TEAA-AKY---NIINLPSLVYFRK-QVP-L 61 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-------------~~~c-~~~---~i~~~Ptl~~f~~-~~~-~ 61 (346)
|.|||+||++|++.+|.+.+++++++ ..+..+.+|+ .... ..| ++.++||.+++.. |.. .
T Consensus 55 vnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 55 VFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 58999999999999999999998762 2233334442 2333 345 8899999999874 442 2
Q ss_pred -eecCCCCCHHHHHHHHh
Q psy160 62 -LYDGDLFDEEKILTWLT 78 (346)
Q Consensus 62 -~y~G~~~~~~~i~~~i~ 78 (346)
.+.|..+. +++.+.+.
T Consensus 134 ~~~~G~~s~-~~l~~~I~ 150 (153)
T TIGR02738 134 PVLQGAVDE-AELANRMD 150 (153)
T ss_pred EEeecccCH-HHHHHHHH
Confidence 46787655 45655543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.4e-07 Score=65.75 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.9
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCc
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGEN 280 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~ 280 (346)
..-+..|+++||++|....+.+++++..+. ++.+..+ ..++++++|+|.+.|++++ +|+. .+.|..
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~ 81 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRM 81 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCC
Confidence 345677899999999999999999998865 3555554 5678999999999999964 7764 456643
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=70.22 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=52.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--eCC------------------------hhhHHhhCCCCc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--MAD------------------------PRYARKWGVTKL 157 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~------------------------~~l~~~~~i~~~ 157 (346)
++++++.|+++||++|+...+.+.++.+.+...++.++. ++. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 578999999999999999999999999998544455554 443 678999999999
Q ss_pred ceEEEEe-cCC
Q psy160 158 PAVVYFR-HRF 167 (346)
Q Consensus 158 Ptl~~~~-~g~ 167 (346)
|+++++. +|+
T Consensus 99 P~~~l~d~~g~ 109 (116)
T cd02966 99 PTTFLIDRDGR 109 (116)
T ss_pred ceEEEECCCCc
Confidence 9999996 454
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-07 Score=74.70 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------~~~l~~~~~i~~~P 158 (346)
.+++++|.||++||++|++..|.+.++++. +..+..+..+ ...++..|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 568899999999999999999999988753 2222222211 22356689999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhh
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
+.+++. +|+ ...+.|..+.+ ++.+.++.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~-~l~~~i~~ 174 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPR-VWESEIKP 174 (185)
T ss_pred eEEEECCCceEEEEEecCCCHH-HHHHHHHH
Confidence 766664 677 55678888744 66666554
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=68.27 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=73.6
Q ss_pred HHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcC--CChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh
Q psy160 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA 254 (346)
Q Consensus 180 ~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~ 254 (346)
.+++-+... ....++..++++++......+|.|-.. -++.+....-.+.++++++.+.++.++++ .+++++
T Consensus 9 ~l~~rl~~~----g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA 84 (132)
T PRK11509 9 ALWQRMLAR----GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG 84 (132)
T ss_pred HHHHHHHHc----CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHH
Confidence 455555553 223556688888888777665555432 34666778889999999997545889998 789999
Q ss_pred hhCCCccccEEEEEeCCeEEE-eecCcc
Q psy160 255 KRYSIKTFPALVYFRNGNPLI-FEGENK 281 (346)
Q Consensus 255 ~~~~i~~~Pti~~~~~g~~~~-y~g~~~ 281 (346)
.+|||.++||+++|++|+.+. ..|.++
T Consensus 85 ~~fgV~siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 85 DRFGVFRFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred HHcCCccCCEEEEEECCEEEEEEeCcCC
Confidence 999999999999999999764 567655
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-07 Score=70.71 Aligned_cols=72 Identities=18% Similarity=0.397 Sum_probs=52.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEE---------------------EE--cChhhhhhCCCccccE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMV---------------------KI--QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~---------------------~i--~~~~~~~~~~i~~~Pt 264 (346)
..++++|.||++||++|..+.|.+.++++.+. -+.+. .+ .+..+++.|+|.+.|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 44799999999999999999999998887743 11111 11 3457899999999999
Q ss_pred EEEEeCCeE-EEeecCcc
Q psy160 265 LVYFRNGNP-LIFEGENK 281 (346)
Q Consensus 265 i~~~~~g~~-~~y~g~~~ 281 (346)
++++.+++. ..+.|..+
T Consensus 97 ~~vid~~gi~~~~~g~~~ 114 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTS 114 (123)
T ss_pred EEEEcCCCeEEEEeccCC
Confidence 999976552 23455554
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.3e-07 Score=69.61 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=52.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~~ 262 (346)
+++++|.||++||++|+.+.|.+.++++.+. +.++.+ .+..+++.|++.++
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 5789999999999999999999999987752 222222 34467888999999
Q ss_pred cEEEEE-eCCeE-EEeecCcc
Q psy160 263 PALVYF-RNGNP-LIFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~-~~y~g~~~ 281 (346)
|+.+++ ++|+. ..+.|..+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred CeEEEECCCceEEEEEeccCC
Confidence 966555 68874 34667664
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-06 Score=80.42 Aligned_cols=167 Identities=14% Similarity=0.202 Sum_probs=114.1
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCc--eeeecCCCCCHHHHHHHHhccC
Q psy160 4 NDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQV--PLLYDGDLFDEEKILTWLTSQD 81 (346)
Q Consensus 4 y~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~--~~~y~G~~~~~~~i~~~i~~~~ 81 (346)
+.+.|..|+++...++++++..++ |.+...+ .+....|++.+..+|. -+.|.|-+..+ ++..|+..-.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~s~k--i~~~~~~-------~~~~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~s~i~~i~ 95 (515)
T TIGR03140 26 SAGSHEKSKELLELLDEIASLSDK--ISLTQNT-------ADTLRKPSFTILRDGADTGIRFAGIPGGH-EFTSLVLAIL 95 (515)
T ss_pred EeCCCchhHHHHHHHHHHHHhCCC--eEEEEec-------CCcCCCCeEEEecCCcccceEEEecCCcH-HHHHHHHHHH
Confidence 344789999888888888776644 3332211 1113559999987653 47899988875 7777765422
Q ss_pred CccccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCc
Q psy160 82 VFEIKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 157 (346)
Q Consensus 82 ~p~~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~ 157 (346)
.. +..-..|+++..+.+-.=+ +..+-.|+++.|++|......+.+++.... +|..-.+| +++++.+|++.+.
T Consensus 96 ~~--~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~V 171 (515)
T TIGR03140 96 QV--GGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQGV 171 (515)
T ss_pred Hh--cCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCccc
Confidence 22 1123556777666655433 445889999999999998888888887643 35555555 8899999999999
Q ss_pred ceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 158 PAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++++ +|+ ..+.|..... .+++.+...
T Consensus 172 P~~~i--~~~-~~~~g~~~~~-~~~~~l~~~ 198 (515)
T TIGR03140 172 PAVFL--NGE-EFHNGRMDLA-ELLEKLEET 198 (515)
T ss_pred CEEEE--CCc-EEEecCCCHH-HHHHHHhhc
Confidence 99976 443 4577877744 777777654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=64.75 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=46.9
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+.+.+..+++++++|.|+++||++|+.|...+ .++.+.+.+ ++..+.+ +..+-...+...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 34455667899999999999999999998777 344443443 6777777 222211122226699999985
|
... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-07 Score=92.91 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=66.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----C-------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----A-------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----~-------------------------~~~l~~~~ 152 (346)
.+++++|.|||+||++|+...|.++++++++++.++.++.+ | ...+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 46899999999999999999999999999986555555433 1 23567899
Q ss_pred CCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 153 GVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 153 ~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.++|+++++ ++|+ ...+.|....+ .+.+++...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~-~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRK-DLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHH-HHHHHHHHH
Confidence 99999999999 5787 34577877644 777777653
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=66.15 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=54.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC------------------------hhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD------------------------PQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~------------------------~~~~~~~~i~~~ 262 (346)
+++++|.|+++||++|+...+.+.++.+++.+.++.++.+ +. ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6799999999999999999999999999986446777776 32 668899999999
Q ss_pred cEEEEEe-CCeE
Q psy160 263 PALVYFR-NGNP 273 (346)
Q Consensus 263 Pti~~~~-~g~~ 273 (346)
|+++++. +|+.
T Consensus 99 P~~~l~d~~g~v 110 (116)
T cd02966 99 PTTFLIDRDGRI 110 (116)
T ss_pred ceEEEECCCCcE
Confidence 9999885 5654
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=68.13 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=50.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------------~~~l~~~~ 152 (346)
++++++|.|+++||+.|...+|.+.++.++++..++.++.++ ...+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457899999999999999999999999999865555544321 23466778
Q ss_pred CCCCcceEEEEe-cCC
Q psy160 153 GVTKLPAVVYFR-HRF 167 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~ 167 (346)
++.++|+.+++. +|+
T Consensus 102 ~v~~~P~~~vid~~G~ 117 (126)
T cd03012 102 GNQYWPALYLIDPTGN 117 (126)
T ss_pred CCCcCCeEEEECCCCc
Confidence 888888888885 354
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=73.09 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=50.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-----------------------ChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-----------------------DPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-----------------------~~~~~~~~~i~~ 261 (346)
..++++|.||++||++|+...|.+.+++++ ++.+..+ + ...+++.|++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 567999999999999999999999998753 3334433 1 112445789999
Q ss_pred ccEEEEE-eCCeE-EEeecCccc
Q psy160 262 FPALVYF-RNGNP-LIFEGENKI 282 (346)
Q Consensus 262 ~Pti~~~-~~g~~-~~y~g~~~~ 282 (346)
+|+.+++ ++|+. ..+.|..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~ 165 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNP 165 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCH
Confidence 9976666 58873 446677653
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-06 Score=67.22 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=49.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~ 257 (346)
..++++|.||++||++|....|.+.++.+++++.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 45799999999999999999999999999997545666554 112345567
Q ss_pred CCccccEEEEEe-CCe
Q psy160 258 SIKTFPALVYFR-NGN 272 (346)
Q Consensus 258 ~i~~~Pti~~~~-~g~ 272 (346)
++.++|+.+++. +|+
T Consensus 102 ~v~~~P~~~vid~~G~ 117 (126)
T cd03012 102 GNQYWPALYLIDPTGN 117 (126)
T ss_pred CCCcCCeEEEECCCCc
Confidence 778888888884 565
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=71.59 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=50.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.|.+.++++. ++.+..+ .+..+.+.|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 467999999999999999999999988764 1222211 2345677889999
Q ss_pred ccEEEEE-eCCeEE-EeecCcc
Q psy160 262 FPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+|+.+++ ++|+.. .+.|..+
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCC
Confidence 9966655 688743 4567654
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=90.70 Aligned_cols=74 Identities=19% Similarity=0.402 Sum_probs=58.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc------------------------------ChhhhhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------------------------DPQLAKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------------------------~~~~~~~~ 257 (346)
..++++|.|||+||++|+...|.++++.+++++.++.++.+. +..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 368999999999999999999999999999976456665541 22466789
Q ss_pred CCccccEEEEE-eCCeEE-EeecCcc
Q psy160 258 SIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+|.++|+++++ ++|+.+ ++.|...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccC
Confidence 99999999999 688754 4566543
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-06 Score=63.12 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=63.0
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec--C
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH--R 166 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~--g 166 (346)
++...+++++++|+|+++||+.|+.+... | .++.+.++. +..+...| ...++..|++.++|++.++.. |
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC
Confidence 33444567899999999999999998764 3 334444433 24444444 447899999999999999974 5
Q ss_pred C-cceecCCcchhHHHHHHHhhc
Q psy160 167 F-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 167 ~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+ .....|..+.+ +++..+++.
T Consensus 89 ~~l~~~~G~~~~~-~f~~~L~~~ 110 (114)
T cd02958 89 EVLKVWSGNITPE-DLLSQLIEF 110 (114)
T ss_pred cEeEEEcCCCCHH-HHHHHHHHH
Confidence 5 44578888744 777766653
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=81.77 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred eecCHH-HHHHHHhcCC--cEEEEEECCCChhHHHHHHH-HHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcc
Q psy160 90 EEVNRR-MLDKLLEENE--FVTVFFYETDHKDSVKVLER-LEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 158 (346)
Q Consensus 90 ~~l~~~-~~~~~~~~~~--~~lv~F~~~~C~~c~~~~~~-~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~P 158 (346)
..++.. .+++.+.+++ ++++.|||+||-.||.+.+. +.+.....+-.++...+.| ..++-++||+-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 445544 8889888876 99999999999999988875 3333333333446666665 45678899999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++++|. +|+ +..-.|-++ ++.+++++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~-a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLT-ADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceec-HHHHHHHHHHh
Confidence 999998 454 455778877 44888888764
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=59.85 Aligned_cols=73 Identities=21% Similarity=0.505 Sum_probs=54.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHh
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
..++++|++|..+...+++++..++ ..+.+.++.+.+-+.+|||.+.|++++ ||. +.|.|...+.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHHhC
Confidence 4478899999999999999988874 456677777766669999999999966 554 567885444467877764
|
... |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=69.77 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=56.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---------------------ChhhHHhhCCCCcceEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---------------------DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---------------------~~~l~~~~~i~~~Ptl~ 161 (346)
.+++++|.|+++||+.|++..|.+.++.+.. +.++.++..+ ..++++.|++...|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5578999999999999999999999988654 3334444311 34677899999999888
Q ss_pred EEecCCcceecCCcchhHHHHHHHh
Q psy160 162 YFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 162 ~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
++.+...+.+.|.....+.+.+.++
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHH
Confidence 8754334455565433334444443
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=65.32 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE----cChhhhhhCCCccccEEEEEe-CCe
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFR-NGN 272 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pti~~~~-~g~ 272 (346)
++...+++++++|.|+++||++|+.|...+- ++.+.++. ++..+.+ .+.... ..+ .++||++++. +|+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCC
Confidence 3445567899999999999999999987653 44444432 4444444 111121 233 5799999995 554
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.9e-06 Score=63.31 Aligned_cols=86 Identities=15% Similarity=0.302 Sum_probs=59.8
Q ss_pred HHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec-C-C
Q psy160 98 DKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH-R-F 167 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~-g-~ 167 (346)
+...++++..+|+|+++||+.|..+.... .++.+.++. ++.+..+| ..+++.+|+++++|++.++.. | +
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 34445668999999999999999888652 233334433 35554443 557999999999999999964 3 1
Q ss_pred -----cceecCCcchhHHHHHHH
Q psy160 168 -----PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 168 -----~~~y~g~~~~~~~i~~fi 185 (346)
.....|..+.+ +++.++
T Consensus 100 ~~~~~~~~~~G~~~~~-~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPE-ELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHH-HHHHhh
Confidence 22467888744 777765
|
|
| >cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=59.63 Aligned_cols=89 Identities=25% Similarity=0.468 Sum_probs=72.7
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC--Ccce
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR--FPSI 170 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g--~~~~ 170 (346)
+.+.++.++..++.++|.|+.++++ .....|.++|..++. .+.|+.+.+.+++.++++. .|++.+|++. .+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTSDKEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEChHHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 3566777888889999999998877 567789999998865 3899999999999998876 4899999863 3677
Q ss_pred ecCCcchhHHHHHHHhh
Q psy160 171 YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 y~g~~~~~~~i~~fi~~ 187 (346)
|+|..+ .++|.+|+..
T Consensus 81 y~g~~~-~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFT-EESLVEFIKD 96 (97)
T ss_pred CCCCCC-HHHHHHHHHh
Confidence 999887 4589999875
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.2e-06 Score=67.88 Aligned_cols=79 Identities=8% Similarity=0.102 Sum_probs=56.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------ChhhHHhhCC--CCcceEEEEe-cCCcc-
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------DPRYARKWGV--TKLPAVVYFR-HRFPS- 169 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------~~~l~~~~~i--~~~Ptl~~~~-~g~~~- 169 (346)
+|.||++||++|++..|.+++++++++ ..+..+.+| ...+...|++ .++|+.+++. +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 788999999999999999999999863 222222222 2336678995 6999999995 46642
Q ss_pred -eecCCcchhHHHHHHHhhc
Q psy160 170 -IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 170 -~y~g~~~~~~~i~~fi~~~ 188 (346)
.+.|..+ ++++.+.+.+.
T Consensus 152 ~~~~G~~~-~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATD-AAGFMARMDTV 170 (181)
T ss_pred EEEECCCC-HHHHHHHHHHH
Confidence 4889887 43676666554
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.1e-06 Score=60.01 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcceEEEEe
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA--DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.+.+..+++++++|.|+++||+.|+.+...+ .++.+.+. .++..+.+| ..+--.++...++|+++++.
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 44555667889999999999999999998776 33333233 236666665 22211133237799999985
|
... |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-06 Score=66.41 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=52.2
Q ss_pred ccceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCc--
Q psy160 208 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 260 (346)
Q Consensus 208 ~~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~-- 260 (346)
..++++|.||+. ||++|....|.+.++.+.++..++.++.+ .+..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 457899999999 99999999999999988876545555544 234678888988
Q ss_pred -------cccEEEEE-eCCeEE
Q psy160 261 -------TFPALVYF-RNGNPL 274 (346)
Q Consensus 261 -------~~Pti~~~-~~g~~~ 274 (346)
++|+++++ ++|+.+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEE
T ss_pred cccccCCeecEEEEEECCCEEE
Confidence 99998777 566643
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-06 Score=68.45 Aligned_cols=74 Identities=11% Similarity=0.274 Sum_probs=52.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEE--cC------------C--hHHHHhcCC--CCCCeEEEEe-CCcee
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVK--IS------------D--TEAAAKYNI--INLPSLVYFR-KQVPL 61 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~------------~--~~~c~~~~i--~~~Ptl~~f~-~~~~~ 61 (346)
|.||++||++|++.+|.+.++++.+ |+.++. +| + ..+...|++ .++|+.++.. +|...
T Consensus 74 V~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 74 VLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 5799999999999999999999986 333322 21 1 236668885 6999999986 55542
Q ss_pred --eecCCCCCHHHHHHHHh
Q psy160 62 --LYDGDLFDEEKILTWLT 78 (346)
Q Consensus 62 --~y~G~~~~~~~i~~~i~ 78 (346)
.+.|..+. +++.+.+.
T Consensus 151 ~~~~~G~~~~-~~L~~~I~ 168 (181)
T PRK13728 151 LPLLQGATDA-AGFMARMD 168 (181)
T ss_pred EEEEECCCCH-HHHHHHHH
Confidence 57897765 35555444
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=62.16 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=55.8
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHH-HHH--HHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe--CCe
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--NGN 272 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~--~g~ 272 (346)
+...+++++++|+|+++||.+|+.+.. .|. ++.+.++. +..+..+ +...++..|++.++|+++++. +|+
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc
Confidence 334557899999999999999999865 343 45555553 4444444 345789999999999999996 466
Q ss_pred EE-EeecCcc
Q psy160 273 PL-IFEGENK 281 (346)
Q Consensus 273 ~~-~y~g~~~ 281 (346)
.+ +..|..+
T Consensus 90 ~l~~~~G~~~ 99 (114)
T cd02958 90 VLKVWSGNIT 99 (114)
T ss_pred EeEEEcCCCC
Confidence 43 4566665
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.9e-05 Score=73.00 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|.. .|+.|.++...+++++..-.+ |.+...+. +....|++.+..+|+ .++|.|-..-. ++-
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~k--i~~~~~~~-------~~~~~p~~~~~~~~~~~~i~f~g~P~g~-Ef~ 88 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASLSDK--ISLTQNTA-------DTLRKPSFTILRDGADTGIRFAGIPGGH-EFT 88 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHhCCC--eEEEEecC-------CcCCCCeEEEecCCcccceEEEecCCcH-HHH
Confidence 444666666 688898888777777765333 54433221 123569999987765 57898876644 777
Q ss_pred HHHhhccc-cCcEEEccHHHHHHHHhccce-EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC
Q psy160 183 QWLITQKT-EDRIELITRVMLETMVEETQY-LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257 (346)
Q Consensus 183 ~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~-~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 257 (346)
.|+..-.. ...-..++++..+.+.+=+++ -+-.|.++.|++|......+.+++.... ++..-.+ ..++++++|
T Consensus 89 s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~ 166 (515)
T TIGR03140 89 SLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEAL 166 (515)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhc
Confidence 77766332 112246677766666543344 4667999999999999999999987754 4554444 789999999
Q ss_pred CCccccEEEEEeCCeEEEeecCcc
Q psy160 258 SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.+.|++++ +|+. .+.|..+
T Consensus 167 ~v~~VP~~~i--~~~~-~~~g~~~ 187 (515)
T TIGR03140 167 GIQGVPAVFL--NGEE-FHNGRMD 187 (515)
T ss_pred CCcccCEEEE--CCcE-EEecCCC
Confidence 9999999976 4543 3666554
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=61.91 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=48.7
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHHHH-H--HHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILEGL-E--KVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~~~-~--~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+...++.|.++|+|+++||.+|..+.... . ++.+.++. ++.+..+ +...++..|+++++|+++++.
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 33455678999999999999999876543 2 44444543 4555444 456789999999999999994
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=67.40 Aligned_cols=71 Identities=13% Similarity=0.329 Sum_probs=52.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---------------------cChhhhhhCCCccccEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---------------------QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---------------------~~~~~~~~~~i~~~Pti~ 266 (346)
.+++++|.||++||++|+...|.+.++.+... .++.++.. ...++++.|++.+.|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 45789999999999999999999999876643 24444331 234677889999999887
Q ss_pred EEe-CCeEEEeecCc
Q psy160 267 YFR-NGNPLIFEGEN 280 (346)
Q Consensus 267 ~~~-~g~~~~y~g~~ 280 (346)
++. +|+ +.+.|..
T Consensus 152 lID~~G~-I~~~g~~ 165 (189)
T TIGR02661 152 LLDQDGK-IRAKGLT 165 (189)
T ss_pred EECCCCe-EEEccCC
Confidence 775 565 4566653
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=55.62 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=53.6
Q ss_pred EEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 110 FFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 110 ~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
.+++++|++|..+...+++++..++ ..+.+..+....-..+|||.+.|++++ +|+ ..+.|...+.+++.+|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHHhC
Confidence 3478889999999999999998873 446666665555559999999999965 554 678896555668888764
|
... |
| >cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=58.43 Aligned_cols=88 Identities=20% Similarity=0.356 Sum_probs=69.7
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEE
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLI 275 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~ 275 (346)
+.+.+++++..+++++|.|+.++++ .....|.++|..+++ .+.|+.+.+.++++++++.. |++++|++ ..+..
T Consensus 6 s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~~ 80 (97)
T cd02981 6 SKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTSDKEVAKKLKVKP-GSVVLFKPFEEEPVE 80 (97)
T ss_pred CHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEChHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence 4466777888889999999998876 567899999999986 78999998889999888764 99999976 34677
Q ss_pred eecCccccccchhhhhhh
Q psy160 276 FEGENKILKGTYIGTYIS 293 (346)
Q Consensus 276 y~g~~~~~~~~~~~~~i~ 293 (346)
|.|..+.+ . |..|+.
T Consensus 81 y~g~~~~~--~-l~~fi~ 95 (97)
T cd02981 81 YDGEFTEE--S-LVEFIK 95 (97)
T ss_pred CCCCCCHH--H-HHHHHH
Confidence 99987522 2 666664
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=63.72 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=51.6
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------CChhhHHhhCCC--
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM------------------------ADPRYARKWGVT-- 155 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------~~~~l~~~~~i~-- 155 (346)
++++++|.||+. ||++|...+|.+.++++.++..++.++-+ ....+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 567899999999 99999999999999988875544544432 145789999998
Q ss_pred -------CcceEEEEec-CC
Q psy160 156 -------KLPAVVYFRH-RF 167 (346)
Q Consensus 156 -------~~Ptl~~~~~-g~ 167 (346)
++|+++++.. |+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSB
T ss_pred cccccCCeecEEEEEECCCE
Confidence 9999888764 55
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=61.47 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHH---HHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEec-
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLE---KIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRH- 165 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~---~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~- 165 (346)
++.++...+++++++|.|++.||++|+.+....- ++.+.+++ ++..+.++ +..+. ..+ .++||++|+..
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~ 89 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCC
Confidence 3445555667899999999999999999987642 23333322 24433433 11111 234 68999999964
Q ss_pred CC
Q psy160 166 RF 167 (346)
Q Consensus 166 g~ 167 (346)
|+
T Consensus 90 g~ 91 (130)
T cd02960 90 LT 91 (130)
T ss_pred CC
Confidence 44
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >KOG2501|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-06 Score=65.85 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=52.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC----CcEEEEeC--------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM----DITFVKMA--------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~----~i~~~~~~--------------------------~~~l~~~~ 152 (346)
.++.+.++|.|.||++|+.|.|.+.+..+.++.. .|.|+..| ..+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4589999999999999999999999988888432 36666532 35688899
Q ss_pred CCCCcceEEEEec-CCcc
Q psy160 153 GVTKLPAVVYFRH-RFPS 169 (346)
Q Consensus 153 ~i~~~Ptl~~~~~-g~~~ 169 (346)
+|.+.|++++... |..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 9999999998864 5433
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.99 E-value=3e-05 Score=54.24 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=45.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
+.+|+++||++|++..+.+++. +..+..++++ + ..+++++++.++|++.+. |+. ..|. + .+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g~-~-~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVGF-D-PEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--EeeC-C-HHHHH
Confidence 5789999999999998888652 2223333333 2 235678999999999985 432 5553 3 34777
Q ss_pred HHHh
Q psy160 183 QWLI 186 (346)
Q Consensus 183 ~fi~ 186 (346)
++++
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 7763
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-05 Score=54.78 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=75.3
Q ss_pred eeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCC-cEEEEeC---ChhhHHhhCCC----Ccc-
Q psy160 89 IEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD-ITFVKMA---DPRYARKWGVT----KLP- 158 (346)
Q Consensus 89 v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~-i~~~~~~---~~~l~~~~~i~----~~P- 158 (346)
+..++ .++|.+++.....++|+|..+- ..-...+..+.++|+..++.+ +.++++. ..+||+++.|. .-|
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 34454 5899999999999999998765 334456678999999987654 6666654 56899999998 445
Q ss_pred eEEEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.-|++|. ...|+...+.. +++.|+++.
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~k-Smv~FlrDP 111 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFK-SMVAFLRDP 111 (112)
T ss_pred hhhcccCCCccccccchhhHH-HHHHHhhCC
Confidence 566788888 67799888855 999999864
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity. |
| >KOG2501|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.6e-06 Score=66.06 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=50.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc----cCCeEEEcC--------------------------ChHHHHhcCCCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ----YGIDMVKIS--------------------------DTEAAAKYNIINLP 50 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~----~~i~~~~~~--------------------------~~~~c~~~~i~~~P 50 (346)
++|.|.||++|++|.|.+.+..+.+++ ..|.|++.| -.+++.+|+|.+.|
T Consensus 38 lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 38 LYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred EEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 479999999999999999999999843 346777664 24788899999999
Q ss_pred eEEEEe-CCceeeecC
Q psy160 51 SLVYFR-KQVPLLYDG 65 (346)
Q Consensus 51 tl~~f~-~~~~~~y~G 65 (346)
++++-. +|+.+.-.|
T Consensus 118 ~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 118 ALVILKPDGTVVTEDA 133 (157)
T ss_pred eeEEecCCCCEehHhh
Confidence 998865 565554333
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.6e-05 Score=58.16 Aligned_cols=69 Identities=20% Similarity=0.484 Sum_probs=52.5
Q ss_pred ccceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCc--
Q psy160 208 ETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIK-- 260 (346)
Q Consensus 208 ~~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~-- 260 (346)
.+++++|.||+. ||++|....+.+.++..+++..++.++.+ .+..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 457999999999 99999999999999999887556777766 234566677777
Q ss_pred ----cccEEEEEeCCeEEEe
Q psy160 261 ----TFPALVYFRNGNPLIF 276 (346)
Q Consensus 261 ----~~Pti~~~~~g~~~~y 276 (346)
.+|++.++..+..+.|
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 7788777765444444
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=56.37 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=43.3
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc--C-Ch----HHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKI--S-DT----EAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~----~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
.|+++||++|+++.+.|++ .++.+..+ + +. +++..+++.+.|+++++ |.. ..| .+. +.|.
T Consensus 4 lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~-~~i~ 70 (74)
T TIGR02196 4 VYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDP-EKLD 70 (74)
T ss_pred EEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCH-HHHH
Confidence 6899999999999877764 34455443 3 22 36678999999999885 433 455 333 4777
Q ss_pred HHH
Q psy160 75 TWL 77 (346)
Q Consensus 75 ~~i 77 (346)
+++
T Consensus 71 ~~i 73 (74)
T TIGR02196 71 QLL 73 (74)
T ss_pred HHh
Confidence 775
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >KOG0911|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=61.48 Aligned_cols=174 Identities=14% Similarity=0.230 Sum_probs=106.3
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcc-
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPS- 169 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~- 169 (346)
.+.| +.++.+..++.|+++||..|+.+...+..+++.. .+..+++.+ .+.++..+.+...|...++..|+..
T Consensus 9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~ 84 (227)
T KOG0911|consen 9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD 84 (227)
T ss_pred HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh
Confidence 4555 5556678899999999999999999999999987 347777765 7789999999999999999877633
Q ss_pred eecCCcchh-HHHHHHHhhccc----c---CcEEEc---cHHHHHHHHh---ccceEEEEEE-----cCCChhhHHHHHH
Q psy160 170 IYRGDLSEE-EEVLQWLITQKT----E---DRIELI---TRVMLETMVE---ETQYLAVYFY-----KLNCNICDQILEG 230 (346)
Q Consensus 170 ~y~g~~~~~-~~i~~fi~~~~~----~---~~v~~l---~~~~~~~~~~---~~~~~lv~F~-----~~~c~~c~~~~~~ 230 (346)
+..|..... ....+.+..... . ..+... +...++..+. +.++ ++.|- .|.||..+++...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~-v~lFmKG~p~~P~CGFS~~~v~i 163 (227)
T KOG0911|consen 85 RLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKP-VMLFMKGTPEEPKCGFSRQLVGI 163 (227)
T ss_pred hhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCe-EEEEecCCCCcccccccHHHHHH
Confidence 344433211 012222222111 0 011110 0001222222 2223 34454 4689988888777
Q ss_pred HHHHHhhcCcCceEEEEE-cChhhhhhCC-CccccEE-EEEeCCeEEEeecCc
Q psy160 231 LEKVDDECDIYGIHMVKI-QDPQLAKRYS-IKTFPAL-VYFRNGNPLIFEGEN 280 (346)
Q Consensus 231 ~~~la~~~~~~~i~~~~i-~~~~~~~~~~-i~~~Pti-~~~~~g~~~~y~g~~ 280 (346)
+....- ++.+..| .+.++.+..+ .+..||+ -+|-+|+ |.|+.
T Consensus 164 L~~~nV-----~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE---FiGGl 208 (227)
T KOG0911|consen 164 LQSHNV-----NYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE---FIGGL 208 (227)
T ss_pred HHHcCC-----CeeEEeccCCHHHHHHhhhhcCCCCccceeECCE---eccCc
Confidence 776632 3555666 6777755443 2456776 5677776 44654
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.3e-05 Score=59.03 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=50.2
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCC--
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVT-- 155 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~-- 155 (346)
.+++++|.||+. ||++|...++.+.++..+++..++.++.+ + ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 458899999999 99999999999999999987555665543 2 44566677776
Q ss_pred ----CcceEEEEecCCcce
Q psy160 156 ----KLPAVVYFRHRFPSI 170 (346)
Q Consensus 156 ----~~Ptl~~~~~g~~~~ 170 (346)
.+|++.++..+..+.
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 667777766543333
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.2e-05 Score=62.09 Aligned_cols=71 Identities=24% Similarity=0.461 Sum_probs=54.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c------------------------------Chhhhh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q------------------------------DPQLAK 255 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~------------------------------~~~~~~ 255 (346)
.+++++|.||++||+.|....+.+.++.+++.+.++.++.+ + +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 45789999999999999999999999999987546776666 1 123456
Q ss_pred hCCCccccEEEEEeCCeEEEeec
Q psy160 256 RYSIKTFPALVYFRNGNPLIFEG 278 (346)
Q Consensus 256 ~~~i~~~Pti~~~~~g~~~~y~g 278 (346)
.|++...|+++++..+..+.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 77888899999996433455654
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=65.13 Aligned_cols=81 Identities=19% Similarity=0.367 Sum_probs=60.3
Q ss_pred CcEEEc-cHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
+.|..+ +.+.|-+.+.. ...++|.||.+.+..|..|...|..||.+|. .++|++| ..-.+...|.+...|||
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCPASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCCTTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccCcccCCcccCCCEE
Confidence 456666 45777776543 3468899999999999999999999999987 6999998 22237889999999999
Q ss_pred EEEeCCeEE
Q psy160 266 VYFRNGNPL 274 (346)
Q Consensus 266 ~~~~~g~~~ 274 (346)
++|++|..+
T Consensus 203 lvYk~G~l~ 211 (265)
T PF02114_consen 203 LVYKNGDLI 211 (265)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 999999743
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.5e-05 Score=57.99 Aligned_cols=64 Identities=23% Similarity=0.527 Sum_probs=53.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--ChhhhhhCC--CccccEEEEEeCCeE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--DPQLAKRYS--IKTFPALVYFRNGNP 273 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--~~~~~~~~~--i~~~Pti~~~~~g~~ 273 (346)
.+++++.||++||++|+.+.|.+.++++.+.. .+.+..+ . ...+...++ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 66888999999999999999999999999875 4555555 2 568888999 899999998888754
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.3e-05 Score=74.96 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=55.2
Q ss_pred EccHH-HHHHHHhccc--eEEEEEEcCCChhhHHHHHHHH-HHHhhcCcCceEEEEE-------cChhhhhhCCCccccE
Q psy160 196 LITRV-MLETMVEETQ--YLAVYFYKLNCNICDQILEGLE-KVDDECDIYGIHMVKI-------QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 196 ~l~~~-~~~~~~~~~~--~~lv~F~~~~c~~c~~~~~~~~-~la~~~~~~~i~~~~i-------~~~~~~~~~~i~~~Pt 264 (346)
.++.. .+++.+.+++ +++|+|||+||-.||.+.+..- +.....+-.++...+. ...++-++|++-+.|+
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE
Confidence 34443 7888887766 9999999999999998877554 2222222225666655 2345678999999999
Q ss_pred EEEEe-CCe
Q psy160 265 LVYFR-NGN 272 (346)
Q Consensus 265 i~~~~-~g~ 272 (346)
+++|. +|+
T Consensus 538 ~~ff~~~g~ 546 (569)
T COG4232 538 YLFFGPQGS 546 (569)
T ss_pred EEEECCCCC
Confidence 99997 554
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=57.47 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHH---HhhccCCCcEEEE-------------------eCChhhHHhh
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKI---DGETDNMDITFVK-------------------MADPRYARKW 152 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~---a~~~~~~~i~~~~-------------------~~~~~l~~~~ 152 (346)
++.+++...++..+++|-++.|..|.++....... .+.+.++ +.++. ....+|++.|
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 33444445668899999999999999988764332 2222221 22222 2256899999
Q ss_pred CCCCcceEEEEec-CC-cceecCCcchhH--HHHHHHhh
Q psy160 153 GVTKLPAVVYFRH-RF-PSIYRGDLSEEE--EVLQWLIT 187 (346)
Q Consensus 153 ~i~~~Ptl~~~~~-g~-~~~y~g~~~~~~--~i~~fi~~ 187 (346)
+|+++||+++|.. |+ .....|.+..++ .+++|+.+
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999975 56 334567766552 34555554
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.9e-05 Score=58.93 Aligned_cols=86 Identities=15% Similarity=0.336 Sum_probs=47.8
Q ss_pred ccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhC---CCccccEEEEEe-C
Q psy160 197 ITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRY---SIKTFPALVYFR-N 270 (346)
Q Consensus 197 l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~---~i~~~Pti~~~~-~ 270 (346)
++.+....+.. ..+.-++.|..+|||+|....|.+.++++...+..+.+... +++++...| |..++|+++++. +
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 34444444332 33455666889999999999999999999864323444333 455555544 678899999995 5
Q ss_pred CeEEEeecCccc
Q psy160 271 GNPLIFEGENKI 282 (346)
Q Consensus 271 g~~~~y~g~~~~ 282 (346)
|+.+.-=|++..
T Consensus 108 ~~~lg~wgerP~ 119 (129)
T PF14595_consen 108 GKELGRWGERPK 119 (129)
T ss_dssp --EEEEEESS-H
T ss_pred CCEeEEEcCCCH
Confidence 676655666653
|
|
| >PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00049 Score=52.41 Aligned_cols=97 Identities=15% Similarity=0.341 Sum_probs=68.6
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEEC--CCChhHHHHHHHHHHHHhhc--cCCCcEEEEe--------CChhhHHhhCC-
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYE--TDHKDSVKVLERLEKIDGET--DNMDITFVKM--------ADPRYARKWGV- 154 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~--~~C~~c~~~~~~~~~~a~~~--~~~~i~~~~~--------~~~~l~~~~~i- 154 (346)
....|++-+|++++.+.+.+||.|=. |+-.. ..+|.++|++. ...++.++.+ ++.+|+++|+|
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeK----hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAYPYGEK----HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS--CHH----HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred ceeeccceehhheeccCceEEEEEeccCCCcch----HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 46778999999999999999999954 44333 44566666332 2334666654 28899999999
Q ss_pred -CCcceEEEEecCC--ccee--cCCcchhHHHHHHHhhcc
Q psy160 155 -TKLPAVVYFRHRF--PSIY--RGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 155 -~~~Ptl~~~~~g~--~~~y--~g~~~~~~~i~~fi~~~~ 189 (346)
..||.+.+|..+. ++.| +|+.+. ++|..|+.+++
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~-~~l~~fvk~~t 119 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTA-DNLQRFVKSNT 119 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-H-HHHHHHHHHTS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccH-HHHHHHHHhCC
Confidence 5789999999544 7888 888885 49999999875
|
The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B. |
| >KOG1672|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.4e-05 Score=60.64 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=68.0
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
-++.+|-+....+.-+++.||-|.-..|+-|...++.||+.+- ...|.++ ..|=++.+++|.-+|++++|++|+.
T Consensus 72 ~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 72 ASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred ccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE
Confidence 3577887777777788899999999999999999999999976 5788888 5677899999999999999999987
Q ss_pred EEee
Q psy160 274 LIFE 277 (346)
Q Consensus 274 ~~y~ 277 (346)
+.|-
T Consensus 150 ~D~i 153 (211)
T KOG1672|consen 150 VDYV 153 (211)
T ss_pred EEEE
Confidence 7663
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=60.88 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=52.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------ChhhHH
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~l~~ 150 (346)
.+++++++|+++||+.|...++.+.++.+++.+.++.++.+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 557899999999999999999999999999864445544331 234567
Q ss_pred hhCCCCcceEEEEecCCcceecC
Q psy160 151 KWGVTKLPAVVYFRHRFPSIYRG 173 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~~~~y~g 173 (346)
.|++...|+++++..+..+.|.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEee
Confidence 88888889888886433344443
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.2e-05 Score=49.49 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=42.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhH---HhhCCCCcceEEEEecC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYA---RKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~---~~~~i~~~Ptl~~~~~g 166 (346)
++.|+++||++|.++.+.+.++. ....++.++.++ ..... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA--LLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH--hhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999882 223346666554 22232 47899999999999876
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.7e-05 Score=56.69 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=52.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC--ChhhHHhhC--CCCcceEEEEecCCc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA--DPRYARKWG--VTKLPAVVYFRHRFP 168 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~--~~~l~~~~~--i~~~Ptl~~~~~g~~ 168 (346)
++++++.|+++||++|+.+.|.+.++++.+.. ..+..+.+. .+.+...++ +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 56788888999999999999999999999854 223333342 568899999 999999998887763
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00024 Score=54.71 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=48.0
Q ss_pred HHHHHHHh----ccceEEEEEEc-------CCChhhHHHHHHHHHHHhhcCcCceEEEEE--------c--Chhhhh--h
Q psy160 200 VMLETMVE----ETQYLAVYFYK-------LNCNICDQILEGLEKVDDECDIYGIHMVKI--------Q--DPQLAK--R 256 (346)
Q Consensus 200 ~~~~~~~~----~~~~~lv~F~~-------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------~--~~~~~~--~ 256 (346)
+++.++++ ++++++|+|++ +||++|....|.++++-..... +..++.+ . +..+-+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 44555443 45788999985 4999999999999988777553 5666555 2 223444 5
Q ss_pred CCCccccEEEEEeCCeE
Q psy160 257 YSIKTFPALVYFRNGNP 273 (346)
Q Consensus 257 ~~i~~~Pti~~~~~g~~ 273 (346)
++++++||++-+..++.
T Consensus 85 ~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGER 101 (119)
T ss_dssp C---SSSEEEECTSS-E
T ss_pred eeeeecceEEEECCCCc
Confidence 89999999999987643
|
; PDB: 1V9W_A 1WOU_A. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=48.93 Aligned_cols=57 Identities=32% Similarity=0.630 Sum_probs=43.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh---hhCCCccccEEEEEeCC
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA---KRYSIKTFPALVYFRNG 271 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~---~~~~i~~~Pti~~~~~g 271 (346)
++.|+++||++|..+.+.+.++ +... .++.+..+ ...... ..+++.+.|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4679999999999999999998 3323 26777776 223322 47889999999999876
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=61.55 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PS 169 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~ 169 (346)
++.-|++||.+.|++|..+.|.+..+++.+ +..+..+.+| +..+++++||..+|++++...+. ..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 356699999999999999999999999986 4446666665 46799999999999999998643 22
Q ss_pred e-ecCCcchhHHHHH
Q psy160 170 I-YRGDLSEEEEVLQ 183 (346)
Q Consensus 170 ~-y~g~~~~~~~i~~ 183 (346)
. -.|..+ .++|.+
T Consensus 199 pv~~G~~s-~~~L~~ 212 (215)
T PF13728_consen 199 PVSQGFMS-LDELED 212 (215)
T ss_pred EEeeecCC-HHHHHH
Confidence 2 346665 446654
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=64.36 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=66.9
Q ss_pred cCceeecC-HHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCCh--hhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADP--RYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~--~l~~~~~i~~~Pt 159 (346)
-+.|.+++ .+.|-+.+... ..++|.||.+.++.|..+...|..+|.++.. +.|+++... .+..+|.+...||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccCcccCCcccCCCE
Confidence 35788885 57777776543 3579999999999999999999999998755 778876532 2678999999999
Q ss_pred EEEEecCCcc-ee------cCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFPS-IY------RGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~~-~y------~g~~~~~~~i~~fi~~~ 188 (346)
|++|++|..+ .+ -|.-....+|..|+.+.
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999998732 12 23222233666676654
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=57.24 Aligned_cols=92 Identities=15% Similarity=0.413 Sum_probs=61.3
Q ss_pred HHHHhccceEEEEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE-------------------cChhhhhhCCCc
Q psy160 203 ETMVEETQYLAVYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI-------------------QDPQLAKRYSIK 260 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i-------------------~~~~~~~~~~i~ 260 (346)
..+..+++..+++|-++.|..|..+...+. ++-+-+++ ++.++.+ +..+++++|+++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 334446788999999999999998876554 33333443 3444433 345899999999
Q ss_pred cccEEEEEe-CCeEEE-eecCccccccchhhhhhhcc
Q psy160 261 TFPALVYFR-NGNPLI-FEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 261 ~~Pti~~~~-~g~~~~-y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|++++|+ .|+.+- --|-...+.-..+..++...
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999996 456443 35666555444455555543
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=51.75 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=38.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh-----hCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK-----WGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~-----~~i~~~Ptl~~~~~g~ 167 (346)
+++|+++||++|+++.+.+.++... ...+.++ .+..... +++.+.|++ ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~-----~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA-----YEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc-----eEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe
Confidence 5789999999999999988776543 3345554 3333333 389999998 466664
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=51.71 Aligned_cols=56 Identities=27% Similarity=0.451 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhh-----CCCccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR-----YSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~-----~~i~~~Pti~~~~~g~~~ 274 (346)
++.|+++||++|+.+.+.+.+++..+ ....+ .++..... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~-----~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY-----EWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce-----EEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 46799999999999999998775443 23444 34444333 488999997 57777643
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00031 Score=59.77 Aligned_cols=41 Identities=5% Similarity=0.187 Sum_probs=35.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|.+.+|.+.++++++...++.++.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 46899999999999999999999999999996656665554
|
|
| >PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=50.49 Aligned_cols=98 Identities=14% Similarity=0.382 Sum_probs=69.2
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHH-hhc-CcCceEEEEE--------cChhhhhhCCC--cc
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVD-DEC-DIYGIHMVKI--------QDPQLAKRYSI--KT 261 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la-~~~-~~~~i~~~~i--------~~~~~~~~~~i--~~ 261 (346)
...++.-+|++++...+.+||.|-... |.-.-...|.++| +.. ...++-++.+ +|.+++++|++ ..
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 347888899999999999999997532 2224456777787 333 2236888888 68999999999 57
Q ss_pred ccEEEEEeCC--eEEEe--ecCccccccchhhhhhhccC
Q psy160 262 FPALVYFRNG--NPLIF--EGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 262 ~Pti~~~~~g--~~~~y--~g~~~~~~~~~~~~~i~~~~ 296 (346)
+|.+.+|..| .++.| .|+.+.+. +..|++.++
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~---l~~fvk~~t 119 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADN---LQRFVKSNT 119 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHH---HHHHHHHTS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHH---HHHHHHhCC
Confidence 9999999855 48888 77776433 777887764
|
The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B. |
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0005 Score=52.61 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=73.1
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhh---ccCCCcEEEEeC---ChhhHHhhCCCC--cceE
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE---TDNMDITFVKMA---DPRYARKWGVTK--LPAV 160 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~---~~~~~i~~~~~~---~~~l~~~~~i~~--~Ptl 160 (346)
|+++|.++.+.+..++-+..++|+.+ ..-..+.+.+.++|++ +++. +.|+.+| .....+.+|++. .|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 56889999999988887666666633 3346889999999999 7654 8888877 344889999997 8999
Q ss_pred EEEecCC--cce-ecCCcchhHHHHHHHhhcc
Q psy160 161 VYFRHRF--PSI-YRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 161 ~~~~~g~--~~~-y~g~~~~~~~i~~fi~~~~ 189 (346)
.+..... .+. +.+..+. ++|.+|+++..
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~-~~i~~Fv~~~~ 108 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVP-GKLKQFVLDLH 108 (111)
T ss_pred EEEcchhcCcCCCCccccCH-HHHHHHHHHHh
Confidence 9987643 344 4567764 48999988653
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00019 Score=56.52 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=47.3
Q ss_pred cCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh---hCCCCcceEEEEec-
Q psy160 92 VNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK---WGVTKLPAVVYFRH- 165 (346)
Q Consensus 92 l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~---~~i~~~Ptl~~~~~- 165 (346)
++++..+.+..-. +..++.|..+|||.|....|.+.++++...+..+.++..| +.++..+ .|....|+++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 4445444443333 4568888999999999999999999998644456666554 4444433 57889999999964
Q ss_pred CCcceecCCcc
Q psy160 166 RFPSIYRGDLS 176 (346)
Q Consensus 166 g~~~~y~g~~~ 176 (346)
|+...-=|++.
T Consensus 108 ~~~lg~wgerP 118 (129)
T PF14595_consen 108 GKELGRWGERP 118 (129)
T ss_dssp --EEEEEESS-
T ss_pred CCEeEEEcCCC
Confidence 55444445554
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0005 Score=59.80 Aligned_cols=40 Identities=3% Similarity=0.033 Sum_probs=34.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.+++++|.|+++||+.|....|.+.+++++++..++.++-
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIg 137 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILA 137 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4588999999999999999999999999998655555543
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00042 Score=55.75 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=31.3
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+..+++.|++.||++|+...+.+.++.+++...++.++.|
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 3344444559999999999999999999986546777777
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00063 Score=59.29 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=55.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE----------------------------------------Ee-
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV----------------------------------------KM- 143 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~----------------------------------------~~- 143 (346)
+..++.|..|.|++|+++.+++.++.+. +..+.+. .+
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 5679999999999999999998876531 1111110 00
Q ss_pred ----CChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 144 ----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 144 ----~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++..+++++||++.||++ +.+|+. ..|....+ .|.+++.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~--~~G~~~~~-~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTL--VPGYQGPK-EMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeE--eeCCCCHH-HHHHHHHHc
Confidence 166789999999999999 667763 46777644 788888754
|
|
| >KOG0911|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00089 Score=56.46 Aligned_cols=162 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceee-ecCCCCCH-HHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLL-YDGDLFDE-EKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~-y~G~~~~~-~~i~~ 75 (346)
+.|+++||..|+++...++.+++.. .+..+++.+ .+++|+.+.+...|.++++..|..+. ..|..... ....+
T Consensus 22 ~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~ 99 (227)
T KOG0911|consen 22 LHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLVSKVE 99 (227)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHHHHHHH
Confidence 3699999999999999999999987 567777775 57999999999999999998775543 23322221 11222
Q ss_pred HHhccCC----ccccCceeecC-------HHHHHHHHhcCCcEEEEEE-----CCCChhHHHHHHHHHHHHhhccCCCcE
Q psy160 76 WLTSQDV----FEIKNEIEEVN-------RRMLDKLLEENEFVTVFFY-----ETDHKDSVKVLERLEKIDGETDNMDIT 139 (346)
Q Consensus 76 ~i~~~~~----p~~~~~v~~l~-------~~~~~~~~~~~~~~lv~F~-----~~~C~~c~~~~~~~~~~a~~~~~~~i~ 139 (346)
.+..... +.....+.+.. .+-++++++++. ++.|- .|.|+..+++...++... +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~--v~lFmKG~p~~P~CGFS~~~v~iL~~~n-------V~ 170 (227)
T KOG0911|consen 100 KLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKP--VMLFMKGTPEEPKCGFSRQLVGILQSHN-------VN 170 (227)
T ss_pred HhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCe--EEEEecCCCCcccccccHHHHHHHHHcC-------CC
Confidence 2222211 11122222211 113334433333 45554 467998888777765543 33
Q ss_pred EEEeC---ChhhHHhhC-CCCcceE-EEEecCCcceecCCcc
Q psy160 140 FVKMA---DPRYARKWG-VTKLPAV-VYFRHRFPSIYRGDLS 176 (346)
Q Consensus 140 ~~~~~---~~~l~~~~~-i~~~Ptl-~~~~~g~~~~y~g~~~ 176 (346)
+...| +..+.+-.+ ....||+ .+|-+| .+.|..+
T Consensus 171 ~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G---EFiGGlD 209 (227)
T KOG0911|consen 171 YTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG---EFIGGLD 209 (227)
T ss_pred eeEEeccCCHHHHHHhhhhcCCCCccceeECC---EeccCcH
Confidence 44433 555554333 2334555 344566 3555543
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00036 Score=57.64 Aligned_cols=41 Identities=2% Similarity=0.029 Sum_probs=35.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|.+..|.+.++.+++++.++.++-+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 45789999999999999999999999999997666666654
|
|
| >KOG1672|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00038 Score=57.18 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=70.7
Q ss_pred cCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+...++. +.+|-+..+++..+++.||-|.-..|+-+-..++.+|+..-. ..|++++ .|=|+.+++|+-.|++.
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccCceeeeeeeeeEeeeEE
Confidence 34677775 788888888889999999999999999999999999987533 6677776 66799999999999999
Q ss_pred EEecCCccee
Q psy160 162 YFRHRFPSIY 171 (346)
Q Consensus 162 ~~~~g~~~~y 171 (346)
+|.+|....|
T Consensus 143 l~k~g~~~D~ 152 (211)
T KOG1672|consen 143 LFKNGKTVDY 152 (211)
T ss_pred EEEcCEEEEE
Confidence 9999985543
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=59.74 Aligned_cols=35 Identities=6% Similarity=0.313 Sum_probs=30.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKI 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 35 (346)
|.|+|+||+.|.+-+|.|.++.+.+...|+.++.+
T Consensus 44 v~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv 78 (199)
T PTZ00056 44 ITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF 78 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe
Confidence 57999999999999999999999997777777655
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00058 Score=54.39 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCCCc-
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVTKL- 157 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~~~- 157 (346)
+++++|.|+ +.||+.|....+.+.++.+.+...++.++.+ + ...+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678888998 5899999999999999998885444555543 1 3456677777766
Q ss_pred --------ceEEEEec-CC-cceecCCc
Q psy160 158 --------PAVVYFRH-RF-PSIYRGDL 175 (346)
Q Consensus 158 --------Ptl~~~~~-g~-~~~y~g~~ 175 (346)
|+.+++.. |+ ...|.|..
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCC
Confidence 67666653 54 33355544
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00053 Score=55.15 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.1
Q ss_pred CcEEEEE-ECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 105 EFVTVFF-YETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 105 ~~~lv~F-~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++++|.| .+.||+.|+..+|.+.++.+++...++.++.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 4455555 58999999999999999999986555666554
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=49.81 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=40.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc---Ch-----hhhhhCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ---DP-----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~---~~-----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
++.|+++||++|..+.+.+.+++ ..+ .+.+..++ +. .+.+..++.++|++ |-+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 36799999999999999999987 222 35666661 22 25666789999997 456754
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0003 Score=50.64 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=39.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Ch-----hhHHhhCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP-----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~-----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.|+++||++|.++.+.+.++.-. . .+.+..++ +. .+.+..|+..+|++.+ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~--~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK--P-AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC--C-CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 4789999999999999999887621 1 25555554 11 2666789999999843 553
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0019 Score=48.74 Aligned_cols=89 Identities=21% Similarity=0.397 Sum_probs=68.2
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec-------
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH------- 165 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~------- 165 (346)
+.+++++++..++..+|-|+..--+ .....|.++|..++.. ..|+......+...+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d-~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES-FRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc-CEEEEEChHHHHHhcCC--CCceEEEechhhhccc
Confidence 5678889888888888888765333 4677888999988443 78888888889999998 788888832
Q ss_pred -CCcceecCCcchhHHHHHHHhhc
Q psy160 166 -RFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 166 -g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.....|+|..+ .++|.+|+..+
T Consensus 81 de~~~~y~g~~~-~~~l~~fi~~~ 103 (104)
T cd03069 81 EDSSVKFDGDLD-SSKIKKFIREN 103 (104)
T ss_pred CcccccccCcCC-HHHHHHHHHhh
Confidence 22456999887 45999999764
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00065 Score=56.63 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=54.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhh-ccC--CCc-EEEE-----------------------------eC-Chhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGE-TDN--MDI-TFVK-----------------------------MA-DPRY 148 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~-~~~--~~i-~~~~-----------------------------~~-~~~l 148 (346)
.+++++|.|+|.||+.|+.-.|.+.+++.+ +.- ... ..++ .| ...+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 378999999999999999999999998753 211 000 1111 12 3356
Q ss_pred HHhhCCCCcceE-EEEe-cCC-cceecCCcchhHHHHH
Q psy160 149 ARKWGVTKLPAV-VYFR-HRF-PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 149 ~~~~~i~~~Ptl-~~~~-~g~-~~~y~g~~~~~~~i~~ 183 (346)
...||+.+.|+. +++. +|+ ...+.|..+.+ ++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS-DIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHH-HHHH
Confidence 779999999776 4554 466 45678887744 4443
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=50.85 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=67.5
Q ss_pred EEEcc-HHHHHHHHhccceEEEEEEcC--CChh-h-HHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--ccc
Q psy160 194 IELIT-RVMLETMVEETQYLAVYFYKL--NCNI-C-DQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFP 263 (346)
Q Consensus 194 v~~l~-~~~~~~~~~~~~~~lv~F~~~--~c~~-c-~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~P 263 (346)
+..++ .+.+++...+++.++|.|... .|.. + ......+.++|+++++..+.|+.+ ....+.+.||+. ++|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 34444 556676777777777777643 2322 2 467899999999999833888888 455699999995 499
Q ss_pred EEEEEeCCe--EEEeecCccccccchhhhhhhcc
Q psy160 264 ALVYFRNGN--PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 264 ti~~~~~g~--~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
+++++...+ +..+.|..+.+. +..|++.-
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~---i~~Fv~~~ 114 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDG---INEFLREL 114 (130)
T ss_pred EEEEEecccCccccccCccCHHH---HHHHHHHH
Confidence 999997543 322567776433 66666653
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >KOG3425|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=51.5
Q ss_pred HHHHHHHh---ccceEEEEEEc--------CCChhhHHHHHHHHHHHhhcCcCceEEEEE----------cChhhhhhCC
Q psy160 200 VMLETMVE---ETQYLAVYFYK--------LNCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQLAKRYS 258 (346)
Q Consensus 200 ~~~~~~~~---~~~~~lv~F~~--------~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~~~~~~ 258 (346)
++|++.++ +.+-++|+|++ +||+.|....|.+.++-+.... ++.|+.+ .+..+-+..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCC
Confidence 55666543 34558999995 5999999999999998876554 6777766 2344555666
Q ss_pred C-ccccEEEEEeC
Q psy160 259 I-KTFPALVYFRN 270 (346)
Q Consensus 259 i-~~~Pti~~~~~ 270 (346)
+ +++||++=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998874
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00037 Score=58.10 Aligned_cols=75 Identities=7% Similarity=0.100 Sum_probs=50.1
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhh-cCc--Cc-eEEEEE------------------------------cChhhh
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDE-CDI--YG-IHMVKI------------------------------QDPQLA 254 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~-~~~--~~-i~~~~i------------------------------~~~~~~ 254 (346)
.++++|.|||.||++|+.-.|.+.+++.+ +.- +. ...+.+ .+..+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 78999999999999999999999999754 221 00 011111 223456
Q ss_pred hhCCCccccEE-EEE-eCCeE-EEeecCcccc
Q psy160 255 KRYSIKTFPAL-VYF-RNGNP-LIFEGENKIL 283 (346)
Q Consensus 255 ~~~~i~~~Pti-~~~-~~g~~-~~y~g~~~~~ 283 (346)
..+++.+.|+. +++ ++|+. ..+.|..+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCCCHH
Confidence 68889999766 455 56764 4567876543
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=57.97 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=59.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cce
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PSI 170 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~~ 170 (346)
+.-|++||.+.|++|.++.|.+...++.+. ..+..+.+| +..+++++||..+|++++...+. ...
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 456999999999999999999999998863 335555555 34588999999999999997643 222
Q ss_pred -ecCCcchhHHHHHHHhh
Q psy160 171 -YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 -y~g~~~~~~~i~~fi~~ 187 (346)
=.|..+ .++|.+-+..
T Consensus 230 v~~G~iS-~deL~~Ri~~ 246 (256)
T TIGR02739 230 LAYGFIS-QDELKERILN 246 (256)
T ss_pred EeeccCC-HHHHHHHHHH
Confidence 236666 4467665544
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00071 Score=58.20 Aligned_cols=62 Identities=29% Similarity=0.562 Sum_probs=51.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|+.||.+.|+.|..+.|.+..+++++. ..+..+.+ .+.+++++++|..+|+++++..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG-FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 5677999999999999999999999999974 35555555 24788999999999999998654
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00073 Score=52.01 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHh----cCCcEEEEEEC-------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHH--h
Q psy160 95 RMLDKLLE----ENEFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYAR--K 151 (346)
Q Consensus 95 ~~~~~~~~----~~~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~--~ 151 (346)
++|.++++ ++++++|+|++ +||+.|....|.++++-..... +..++.+. +..... +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 34444443 34788899985 5999999999999988776532 35555432 223344 6
Q ss_pred hCCCCcceEEEEecC
Q psy160 152 WGVTKLPAVVYFRHR 166 (346)
Q Consensus 152 ~~i~~~Ptl~~~~~g 166 (346)
++++++|||+-+..+
T Consensus 85 ~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 85 LKLKGIPTLIRWETG 99 (119)
T ss_dssp C---SSSEEEECTSS
T ss_pred eeeeecceEEEECCC
Confidence 999999999999765
|
; PDB: 1V9W_A 1WOU_A. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00091 Score=53.25 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=32.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....+.+.++..++.+.++.++.+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 63 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 578889999 5899999999999999988886445666655
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0039 Score=46.91 Aligned_cols=95 Identities=20% Similarity=0.365 Sum_probs=70.8
Q ss_pred eeec-CHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec-
Q psy160 89 IEEV-NRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH- 165 (346)
Q Consensus 89 v~~l-~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~- 165 (346)
+..+ +.++++.++. +++..+|-|+..--+ .....|.++|..++. ...|+......+...+++. .|++.++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATFDSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEECcHHHHHHcCCC-CCcEEEeCCC
Confidence 3445 5678999998 777777877765333 456688999998854 3788888888888888875 799999976
Q ss_pred CC-ccee-cCCcchhHHHHHHHhhcc
Q psy160 166 RF-PSIY-RGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 166 g~-~~~y-~g~~~~~~~i~~fi~~~~ 189 (346)
.. ...| .|..+. +.|.+|+..+.
T Consensus 77 ~e~~~~y~~g~~~~-~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSE-EELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCH-HHHHHHHHHhc
Confidence 33 5669 777664 49999998653
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca |
| >KOG3414|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=49.86 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=61.1
Q ss_pred cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCc-eEEEEE-cChhhhhhCCCccccEEEEEeCCeE
Q psy160 198 TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKI-QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 198 ~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~-i~~~~i-~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
+....++.+. +.+.++|-|...|-+.|.+|...+..+++.+.+.. +.++.+ +-+++.+.|++...|++++|-+++.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 4456676543 46788888999999999999999999999988532 444444 5678899999999999999977765
Q ss_pred EE
Q psy160 274 LI 275 (346)
Q Consensus 274 ~~ 275 (346)
+.
T Consensus 90 mk 91 (142)
T KOG3414|consen 90 MK 91 (142)
T ss_pred EE
Confidence 44
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00053 Score=55.65 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHhhccccCcE--EEccHHHHHHHHhccceEEEEEEcCCChhhHHHHH-HHH--HHHhhcCcCceEEEEE---cChhh
Q psy160 182 LQWLITQKTEDRI--ELITRVMLETMVEETQYLAVYFYKLNCNICDQILE-GLE--KVDDECDIYGIHMVKI---QDPQL 253 (346)
Q Consensus 182 ~~fi~~~~~~~~v--~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~-~~~--~la~~~~~~~i~~~~i---~~~~~ 253 (346)
-.|+.++... .| ...+.+.++...+++++++|.++.+||..|..|.. .|+ ++|+.++. ++.-+++ +.+++
T Consensus 9 Spyl~~ha~~-~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 9 SPYLRQHAHN-PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDI 86 (163)
T ss_dssp -HHHHTTTTS-SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHH
T ss_pred CHHHHHhccC-CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccH
Confidence 3455555443 23 33456778888889999999999999999998865 443 56666654 5556666 56788
Q ss_pred hhhC--------CCccccEEEEEe-CCeEE
Q psy160 254 AKRY--------SIKTFPALVYFR-NGNPL 274 (346)
Q Consensus 254 ~~~~--------~i~~~Pti~~~~-~g~~~ 274 (346)
...| |..|+|+.++.. +|+++
T Consensus 87 d~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 87 DKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 7777 778999988874 66654
|
; PDB: 3IRA_A. |
| >cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=49.77 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=66.2
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC-------
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN------- 270 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~------- 270 (346)
+.+++++++..++.++|.|+..--. .....|.++|..++. +..|+...+..+.+.+++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~--~~~ivl~~p~~~~~k~ 80 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTSDKQLLEKYGY--GEGVVLFRPPRLSNKF 80 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEChHHHHHhcCC--CCceEEEechhhhccc
Confidence 5677888888888888888875433 567899999999975 788988888888899998 688998843
Q ss_pred -CeEEEeecCccccccchhhhhhhc
Q psy160 271 -GNPLIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 271 -g~~~~y~g~~~~~~~~~~~~~i~~ 294 (346)
.....|.|..+.+ .|..|++.
T Consensus 81 de~~~~y~g~~~~~---~l~~fi~~ 102 (104)
T cd03069 81 EDSSVKFDGDLDSS---KIKKFIRE 102 (104)
T ss_pred CcccccccCcCCHH---HHHHHHHh
Confidence 2345688876522 27777664
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=48.08 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=55.5
Q ss_pred ccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE-----cChhhhhhCCCc-cccEEEE
Q psy160 197 ITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI-----QDPQLAKRYSIK-TFPALVY 267 (346)
Q Consensus 197 l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i-----~~~~~~~~~~i~-~~Pti~~ 267 (346)
-+.++++++++. +++++|+=++..|+-.......|++......+ ..+.+..+ -...++++|||. .-|.+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 356889998876 78999988999999999999999988887664 23444444 345689999996 5799999
Q ss_pred EeCCeEE
Q psy160 268 FRNGNPL 274 (346)
Q Consensus 268 ~~~g~~~ 274 (346)
+++|+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999864
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0012 Score=47.81 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=50.4
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hhhHHhhC--CCCcceEEEEecCCcceecCCcchhH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWG--VTKLPAVVYFRHRFPSIYRGDLSEEE 179 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~~~~~ 179 (346)
.++.|+.+||++|++....++++...+.+..+..++++. ..+....+ +..+|+|++ +|+. -|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~---igg~~--- 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH---IGGCT--- 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE---EcCHH---
Confidence 478999999999999999999998765454455555542 23555455 478999864 5642 34332
Q ss_pred HHHHHHhhc
Q psy160 180 EVLQWLITQ 188 (346)
Q Consensus 180 ~i~~fi~~~ 188 (346)
++.+++..+
T Consensus 74 ~~~~~~~~~ 82 (85)
T PRK11200 74 DFEAYVKEN 82 (85)
T ss_pred HHHHHHHHh
Confidence 677776654
|
|
| >cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0028 Score=47.71 Aligned_cols=90 Identities=12% Similarity=0.238 Sum_probs=68.0
Q ss_pred cHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC-C-eEE
Q psy160 198 TRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN-G-NPL 274 (346)
Q Consensus 198 ~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~-g-~~~ 274 (346)
+.++++++++ ++...+|.|+..--+ .....|.++|..++. ++.|+...+.++.+.+++. .|+++++++ . ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~e~~~ 81 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATFDSKVAKKLGLK-MNEVDFYEPFMEEPV 81 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEECcHHHHHHcCCC-CCcEEEeCCCCCCCc
Confidence 6678899998 788888888876433 567889999999975 7888888888888888875 699999975 3 356
Q ss_pred Ee-ecCccccccchhhhhhhcc
Q psy160 275 IF-EGENKILKGTYIGTYISTK 295 (346)
Q Consensus 275 ~y-~g~~~~~~~~~~~~~i~~~ 295 (346)
.| .|..+.+ .|..|++.+
T Consensus 82 ~y~~g~~~~~---~l~~fi~~~ 100 (102)
T cd03066 82 TIPDKPYSEE---ELVDFVEEH 100 (102)
T ss_pred ccCCCCCCHH---HHHHHHHHh
Confidence 68 6655432 277787754
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00061 Score=55.32 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++||+ |....|.+.++.+++++.++.++.+
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v 60 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGF 60 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEe
Confidence 57899999999999 9999999999999997656777766
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0023 Score=55.83 Aligned_cols=81 Identities=14% Similarity=0.290 Sum_probs=58.4
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------ChhhHHhhCCCCcceEEEEecCC--cce
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------DPRYARKWGVTKLPAVVYFRHRF--PSI 170 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------~~~l~~~~~i~~~Ptl~~~~~g~--~~~ 170 (346)
+.-|++||.+.|++|.++.|.+...++.+. ..+..+.+| +...+.++||..+|++++...+. ...
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 456999999999999999999999999863 234445554 23467899999999999997643 222
Q ss_pred -ecCCcchhHHHHHHHhh
Q psy160 171 -YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 171 -y~g~~~~~~~i~~fi~~ 187 (346)
=.|..+ .++|.+-+..
T Consensus 223 v~~G~iS-~deL~~Ri~~ 239 (248)
T PRK13703 223 LSYGFIT-QDDLAKRFLN 239 (248)
T ss_pred EeeccCC-HHHHHHHHHH
Confidence 236666 4467665543
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00058 Score=55.47 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.+++++|.|+++||+ |...+|.++++++++++.++.++.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 368899999999999 99999999999999866666666653
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >KOG3425|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0023 Score=48.30 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=49.7
Q ss_pred HHHHHHHh---cCCcEEEEEEC--------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------ChhhHHhhC
Q psy160 95 RMLDKLLE---ENEFVTVFFYE--------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRYARKWG 153 (346)
Q Consensus 95 ~~~~~~~~---~~~~~lv~F~~--------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l~~~~~ 153 (346)
+.|++.++ +++.++|+|++ +||+.|.+..|.+.++-+... .++.|+.++ +.......+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCC
Confidence 44555543 44669999995 699999999999999888552 236666543 333555666
Q ss_pred C-CCcceEEEEec
Q psy160 154 V-TKLPAVVYFRH 165 (346)
Q Consensus 154 i-~~~Ptl~~~~~ 165 (346)
+ .+.|||+=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998864
|
|
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0044 Score=47.37 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=66.1
Q ss_pred eecCHHHHHHHHhcCCcEEEEEE----CCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---ChhhHHhhCCCC----c
Q psy160 90 EEVNRRMLDKLLEENEFVTVFFY----ETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTK----L 157 (346)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~lv~F~----~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~l~~~~~i~~----~ 157 (346)
-++|.+|..... . .+.++.|+ +..-..-..+.+.+.++|+.++ +. +.|+-+| .....+.||++. .
T Consensus 2 ~~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 356778887774 2 33444444 2343455689999999999998 44 8888887 345788999984 9
Q ss_pred ceEEEEecCC-cceecCCc-chhHHHHHHHhhc
Q psy160 158 PAVVYFRHRF-PSIYRGDL-SEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~~g~-~~~y~g~~-~~~~~i~~fi~~~ 188 (346)
|++.++..+. .+..++.. + .++|.+|+++.
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t-~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSD-VDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCC-HHHHHHHHHHh
Confidence 9999987433 33346666 5 45899998753
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0066 Score=47.84 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=70.9
Q ss_pred ceeecCHHHH-HHHHhcCCcEEEEEECC--CChh-H-HHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC--Cc
Q psy160 88 EIEEVNRRML-DKLLEENEFVTVFFYET--DHKD-S-VKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT--KL 157 (346)
Q Consensus 88 ~v~~l~~~~~-~~~~~~~~~~lv~F~~~--~C~~-c-~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~--~~ 157 (346)
.+.+|+.+++ ++.=.++..-+|.|... .|.. + ..+...+.++|+.+++..+.|+-+| +..+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 5677775544 54444444446666432 1322 2 4788899999999977557777665 55699999996 48
Q ss_pred ceEEEEecCC-cce-ecCCcchhHHHHHHHhhccc
Q psy160 158 PAVVYFRHRF-PSI-YRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 158 Ptl~~~~~g~-~~~-y~g~~~~~~~i~~fi~~~~~ 190 (346)
|++++++..+ .+. +.|..+.+ +|.+|+.+...
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e-~i~~Fv~~~l~ 116 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSED-GINEFLRELSY 116 (130)
T ss_pred CEEEEEecccCccccccCccCHH-HHHHHHHHHHc
Confidence 9999998654 444 67888854 99999988654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=47.72 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=58.4
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcC--CChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKL--NCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~--~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++.+++++++......++.|..+ .++.+....-.+-+|.+.+.+ .+..+-+ .+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 456778888999988877765554432 134445555567777777876 5555554 6778999999999999999
Q ss_pred EeCCeEEEe
Q psy160 268 FRNGNPLIF 276 (346)
Q Consensus 268 ~~~g~~~~y 276 (346)
+++|+++..
T Consensus 89 ~R~g~~lG~ 97 (107)
T PF07449_consen 89 FRDGRYLGA 97 (107)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 999987654
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00091 Score=54.37 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=34.6
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|+++||++|....|.+.++.+++++.++.+..+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 4678999999999999999999999999997656777665
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=51.02 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=32.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....|.+.++.+++.+.++.++.+
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 367777777 8999999999999999999886445666665
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00091 Score=58.20 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=35.2
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV 138 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAF 138 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5799999999999999999999999999998656776666
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00084 Score=54.58 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|...+|.+.+++++++..++.++.+
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i 61 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAF 61 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEE
Confidence 45778999999999999999999999999986656666554
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=56.76 Aligned_cols=72 Identities=14% Similarity=0.323 Sum_probs=50.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE------------------------------------------Ec---
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV------------------------------------------KI--- 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~------------------------------------------~~--- 35 (346)
+.|+.|.||+|+++.+++.++.+. ||.+. .+
T Consensus 112 ~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 112 TVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred EEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 469999999999999998876431 11110 00
Q ss_pred --CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhcc
Q psy160 36 --SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 36 --~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
.+.+++.++||++.|+++ |.+|..+ .|.... +.+.++|.+.
T Consensus 188 v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~-~~L~~~l~~~ 230 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGP-KEMKAFLDEH 230 (232)
T ss_pred HHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCH-HHHHHHHHHc
Confidence 156889999999999988 7777653 575554 4788877643
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0047 Score=50.12 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.8
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|++. ||+.|....+.+.++.+.+.+.++.++.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457889999875 78889999999999988886555655543
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=51.55 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++.++|.|| +.||+.|...++.+.++++++...++.++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv 67 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVL 67 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3578889998 89999999999999999998854444333
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >KOG2603|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0063 Score=53.90 Aligned_cols=103 Identities=12% Similarity=0.227 Sum_probs=76.6
Q ss_pred CceeecCHHHHHHHHhcCC---cEEEEEECC----CChhHHHHHHHHHHHHhhcc-------CCCcEEEEeC---ChhhH
Q psy160 87 NEIEEVNRRMLDKLLEENE---FVTVFFYET----DHKDSVKVLERLEKIDGETD-------NMDITFVKMA---DPRYA 149 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~---~~lv~F~~~----~C~~c~~~~~~~~~~a~~~~-------~~~i~~~~~~---~~~l~ 149 (346)
..|..+|++++..++.... ..+|+|.|- .|.-|.+...++.-+|.... +.++-|..+| .+++-
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 3899999999999997542 358888874 59999999999999998871 1246677776 67899
Q ss_pred HhhCCCCcceEEEEecCC--c---ceec---CCcchhHHHHHHHhhccc
Q psy160 150 RKWGVTKLPAVVYFRHRF--P---SIYR---GDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~g~--~---~~y~---g~~~~~~~i~~fi~~~~~ 190 (346)
++++++..|++.+|...+ + ..++ -... .+++.+|+.+.+.
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~-Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE-AEQIAQFVADRTK 167 (331)
T ss_pred HHhcccCCCeEEEeCCCccccccCccchhhhcchh-HHHHHHHHHHhhh
Confidence 999999999999996422 1 1121 1222 3489999988764
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.428 Sum_probs=33.6
Q ss_pred ccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++++|.|| +.||+.|....+.+.++.++++..++.++.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4678889999 7899999999999999999885435666666
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0025 Score=54.14 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE-----------------------------------------E
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV-----------------------------------------K 142 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~-----------------------------------------~ 142 (346)
.+..++.|+.|+|++|+++.+.+.+....+ .+.+. .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v---~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGV---TVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCce---EEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 367899999999999999999887511111 00000 0
Q ss_pred e-----CChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 143 M-----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 143 ~-----~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+ .+..+++++||++.|+++ +.+|.. ..|....+ .|.+++
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~-~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAA-QLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHH-HHHhhC
Confidence 0 055788999999999997 767753 56766533 666553
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0046 Score=49.09 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+ +.||+.|....|.+.+++++++..++.++.+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~i 62 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGV 62 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5677888888 7899999999999999999885444555543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0015 Score=53.88 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=35.5
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv 68 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAF 68 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEe
Confidence 4789999999999999999999999999998756777777
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0021 Score=53.05 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=36.9
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCC
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVT 155 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~ 155 (346)
.++++++.||+.| |+.|...+|.+.++++++.+..+.-+..| ....++++++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 4578999999999 99999999999999988743223333333 22344555554
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0047 Score=49.67 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=31.2
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 105 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++++|.|+ +.||+.|....|.+.++.+++.+.++.++.+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~v 68 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGI 68 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 66677776 8999999999999999999986545655543
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0037 Score=41.90 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=34.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
+++|..+||++|.+....|++.. .......++ . ..+.+..|..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~-----i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG-----IPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-----BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC-----CeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 57899999999999888885433 224444554 2 23444459999999986
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0066 Score=50.13 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=31.5
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+.| |++|....+.+.++++++. ++.++.+
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~v 82 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCI 82 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEE
Confidence 568999999999 9999999999999988874 4555555
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=34.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHh----hCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARK----WGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~----~~i~~~Ptl~~ 162 (346)
+++|+++||++|.++...+.+. +..+..+.++ ....... .++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988877663 2234455555 3333333 37889999976
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0076 Score=52.96 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=49.8
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|+.||...|+.|..+.|.+..+++++. ..+..+.+ .+...++++||+.+|++++....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 3477899999999999999999999999975 24444444 23557889999999999988644
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0019 Score=54.83 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=26.0
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
+.+++.++||++.|+++ |.+|.. ..|.... +.+.++
T Consensus 161 ~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~-~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIV-LADGRV--VPGAPPA-AQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEE-ECCCeE--ecCCCCH-HHHHhh
Confidence 45788999999999997 777765 4565443 355554
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0054 Score=51.67 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.6
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVK 247 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~ 247 (346)
.++++|.|| +.||+.|....+.+.++.+++.+.++.++.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~ 70 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYS 70 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 468899999 999999999999999888887543444433
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0059 Score=50.69 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=32.3
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.|| +.||++|....+.+.++.+++...++.++.|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~I 69 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGV 69 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 478889999 8999999999999999988886445555555
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0037 Score=45.23 Aligned_cols=59 Identities=25% Similarity=0.431 Sum_probs=41.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C----hhhhhhCC--CccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D----PQLAKRYS--IKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~----~~~~~~~~--i~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|.+....+++++.++.+..+....+. + .++.+..+ +.++|+++ .+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKH 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEE
Confidence 5778999999999999999999877654344444442 2 24544444 47899975 57764
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0075 Score=48.92 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=31.7
Q ss_pred cceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+. ||+.|....+.+.++.+++++.++.++.|
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46889999975 67889998899998988886545777666
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0043 Score=52.22 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.9
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCc
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDI 138 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i 138 (346)
.+++++|.|| +.||+.|..-++.+.++.+++.+.++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv 66 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGV 66 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCC
Confidence 3567899999 99999999999999999888854333
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0048 Score=46.45 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=50.1
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECC--CChhHHHHHHHHHHHHhhccCCCcEEEEe---CChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~--~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---~~~~l~~~~~i~~~Ptl~~ 162 (346)
....++.++++.++......+++|... -++.+....-.+=++.+.+.+. +..+.+ .+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~-~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGR-FRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS-EEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCc-cceEEECchhHHHHHHHhCCccCCeEEE
Confidence 456778889999998877665555432 1334444333344444455432 322222 3788999999999999999
Q ss_pred EecCCc
Q psy160 163 FRHRFP 168 (346)
Q Consensus 163 ~~~g~~ 168 (346)
+++|+.
T Consensus 89 ~R~g~~ 94 (107)
T PF07449_consen 89 FRDGRY 94 (107)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 999863
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0055 Score=53.53 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=49.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------cChhhhhhCCCccccEEEEEeCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
++.-|++||.+.|+.|..+.|.+..+++++. ..+..+.+ .+...+++++|..+|++++....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 3467899999999999999999999999975 24444444 23446778999999999998644
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=45.54 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=54.7
Q ss_pred hcCCcEEEEEECC----CChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEe--cCC---
Q psy160 102 EENEFVTVFFYET----DHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFR--HRF--- 167 (346)
Q Consensus 102 ~~~~~~lv~F~~~----~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~--~g~--- 167 (346)
++.+..+|++|++ ||..|++.+.. .++.+.++. ++.+...| ...++..+++.+||++.++. +++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 4558899999999 78888655421 222223322 24444333 35699999999999999983 233
Q ss_pred cceecCCcchhHHHHHHHhh
Q psy160 168 PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 168 ~~~y~g~~~~~~~i~~fi~~ 187 (346)
..+..|..+.+ +++..+..
T Consensus 93 v~~i~G~~~~~-~ll~~L~~ 111 (116)
T cd02991 93 VGRLEGLIQPE-DLINRLTF 111 (116)
T ss_pred EEEEeCCCCHH-HHHHHHHH
Confidence 33578988855 78777654
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0082 Score=48.82 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=54.2
Q ss_pred HHHHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---Ch
Q psy160 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DP 146 (346)
Q Consensus 73 i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~ 146 (346)
-.-|+...... +-.=...+++.++..-+++++++|.++.+||+.|..|..+ | .++|..++.. +.-+++| .+
T Consensus 8 ~Spyl~~ha~~--~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-FI~VkvDree~P 84 (163)
T PF03190_consen 8 KSPYLRQHAHN--PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-FIPVKVDREERP 84 (163)
T ss_dssp --HHHHTTTTS--SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH--EEEEEETTT-H
T ss_pred CCHHHHHhccC--CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-EEEEEeccccCc
Confidence 34466655543 1122355678899998999999999999999999988863 3 3455555332 4445555 57
Q ss_pred hhHHhh--------CCCCcceEEEEec-CCcc
Q psy160 147 RYARKW--------GVTKLPAVVYFRH-RFPS 169 (346)
Q Consensus 147 ~l~~~~--------~i~~~Ptl~~~~~-g~~~ 169 (346)
++...| |..++|+.+|... |+++
T Consensus 85 did~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 85 DIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred cHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 787777 7889999998875 5443
|
; PDB: 3IRA_A. |
| >KOG3414|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=43.91 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=59.2
Q ss_pred HHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcc
Q psy160 95 RMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 95 ~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
...++.+.+ .+.+++-|...|-+.|.++-..+.++++.+.+. .|..+.++ -+.+.+-|++...||+++|-+++..
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 445555533 367888999999999999999999999998554 35666666 5678889999999999999887743
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=49.96 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=37.8
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEE--eCCh----hhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVK--MADP----RYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~~----~l~~~~~i~~~P 158 (346)
.++++++.||+.| |++|...+|.+.++.+++.+ +.++. +|.. ...+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN--TVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC--CEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 4578999999998 69999999999999998754 44444 4432 233444554455
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.005 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C-h----hhHHhhCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D-P----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~-~----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.|+++||++|..+.+.+.++... ..+..++ . . .+.+..|..++|++ |-+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 5789999999999999999887653 3444433 2 1 24456788999997 33553
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0073 Score=46.18 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=59.8
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhh---cCcCceEEEEE---cChhhhhhCCCcc--ccEE
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE---CDIYGIHMVKI---QDPQLAKRYSIKT--FPAL 265 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~---~~~~~i~~~~i---~~~~~~~~~~i~~--~Pti 265 (346)
|.+++.++...+..+..+..+.|+.+ ..-..+.+.+.++|++ +++ ++.|+.+ ......+.||++. +|.+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 35678888888888877777777732 3346789999999999 997 7888888 2334888999986 8999
Q ss_pred EEEeCCeEEEe
Q psy160 266 VYFRNGNPLIF 276 (346)
Q Consensus 266 ~~~~~g~~~~y 276 (346)
++........|
T Consensus 78 ~i~~~~~~~Ky 88 (111)
T cd03072 78 AIDSFRHMYLF 88 (111)
T ss_pred EEEcchhcCcC
Confidence 99865432334
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0013 Score=47.04 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=43.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---C-h----HHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---D-T----EAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEK 72 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~-~----~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~ 72 (346)
+.|+++||++|+.+.+.|.++...+ .+..++ + . .+.+.+|+.++|++ |-+|.. -|+. ++
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~---igg~---~~ 69 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGVKP-----AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF---IGGC---DD 69 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCCc-----EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE---EcCH---HH
Confidence 4689999999999998888775533 233322 2 1 34456789999986 556654 2322 45
Q ss_pred HHHHHhcc
Q psy160 73 ILTWLTSQ 80 (346)
Q Consensus 73 i~~~i~~~ 80 (346)
+.+..++.
T Consensus 70 ~~~~~~~g 77 (82)
T cd03419 70 LMALHKSG 77 (82)
T ss_pred HHHHHHcC
Confidence 66665544
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0032 Score=52.87 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=31.7
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.++|+||++|....|.+.++.+++++.++.++.+
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~v 80 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAF 80 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 44556799999999999999999999997656777766
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=43.71 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=54.0
Q ss_pred CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC-----ChhhHHhhCCC-CcceEEEE
Q psy160 93 NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA-----DPRYARKWGVT-KLPAVVYF 163 (346)
Q Consensus 93 ~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~-----~~~l~~~~~i~-~~Ptl~~~ 163 (346)
+.+.+++++.. .++++++=.+..|+-+.....+|++....... ..+.++++- ...++.+|||. .-|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 57889999877 56777776888999999999999998887643 445555542 45688999996 77999999
Q ss_pred ecCCc
Q psy160 164 RHRFP 168 (346)
Q Consensus 164 ~~g~~ 168 (346)
++|+.
T Consensus 86 ~~g~~ 90 (105)
T PF11009_consen 86 KNGKV 90 (105)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 99974
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=49.29 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++++++.|| +.||+.|..-++.+.+..+++...++.++
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vi 69 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVY 69 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3467788888 99999999999999999999855444443
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0078 Score=43.69 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=47.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCC--CCcceEEEEecCCcceecCCcchhHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGV--TKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i--~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+++|+.+||++|.+....+.++.....+..+..+.++ ...+....|- ..+|+|++ +|+ +-|..+ +
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~---~igG~~---d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK---HVGGCT---D 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE---EecCHH---H
Confidence 6789999999999999988887654322223334443 1235556663 78999954 453 334432 6
Q ss_pred HHHHHhhc
Q psy160 181 VLQWLITQ 188 (346)
Q Consensus 181 i~~fi~~~ 188 (346)
|.+++.+.
T Consensus 74 l~~~~~~~ 81 (86)
T TIGR02183 74 FEQLVKEN 81 (86)
T ss_pred HHHHHHhc
Confidence 88887664
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.06 Score=40.79 Aligned_cols=94 Identities=9% Similarity=0.211 Sum_probs=67.4
Q ss_pred eec-CHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC-
Q psy160 90 EEV-NRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR- 166 (346)
Q Consensus 90 ~~l-~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g- 166 (346)
.++ +.++++.++... +..+|-|+..--+ .....+.++|..++.. ..|+.+....+..++++. .|++++|+..
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd-~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED-YKFHHTFDSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC-CEEEEEChHHHHHhcCCC-CCceEEECcHH
Confidence 344 567889988776 7777777765322 4567788999987543 788888888899999886 5778887432
Q ss_pred -------CcceecCC-cchhHHHHHHHhhc
Q psy160 167 -------FPSIYRGD-LSEEEEVLQWLITQ 188 (346)
Q Consensus 167 -------~~~~y~g~-~~~~~~i~~fi~~~ 188 (346)
....|+|. ...+++|..|+..+
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 14568887 66664599998753
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=48.70 Aligned_cols=64 Identities=14% Similarity=0.287 Sum_probs=46.0
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE----------------------------cChhhhhhCCC
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------QDPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------~~~~~~~~~~i 259 (346)
.++++|.|| +.||+.|....+.+.++..++...++.+..+ .+..+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 457888899 9999999999999999988886444444444 23456677777
Q ss_pred ----ccc--cEEEEEe-CCe
Q psy160 260 ----KTF--PALVYFR-NGN 272 (346)
Q Consensus 260 ----~~~--Pti~~~~-~g~ 272 (346)
.+. |+.+++. +|+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~ 130 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGI 130 (187)
T ss_pred CcccCCceeeEEEEECCCCE
Confidence 245 7777775 565
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=38.93 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=36.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cCh----hhhhhCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|......|.+..- ......+ .++ ++.+..+..++|++.+ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i-----~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI-----PYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB-----EEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC-----eeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 467899999999998888865531 3444555 232 2333448999999876 6653
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0053 Score=51.49 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=32.7
Q ss_pred cCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.++++ ++.++++||+.|.+.+|.++++.+++++.++.++.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 34544 5566899999999999999999999866566666553
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0092 Score=47.69 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=31.8
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+.| |++|....+.+.++.++++ ++.++.|
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~I 64 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTI 64 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEE
Confidence 568999999988 6999999999999998875 4666665
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0022 Score=44.43 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=31.5
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-ChHHH----HhcCCCCCCeEEE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DTEAA----AKYNIINLPSLVY 54 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~c----~~~~i~~~Ptl~~ 54 (346)
+.|+++||++|.++...+++.. ..+..+.++ +.+.. ...++.++|++++
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDERG-----IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEeCCCChhHHHHHHHHHHCC-----CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 4688999999999887666531 123334444 33333 3346889999876
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.096 Score=40.62 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=56.2
Q ss_pred cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcccc-EEEEEeCC
Q psy160 198 TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFP-ALVYFRNG 271 (346)
Q Consensus 198 ~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~P-ti~~~~~g 271 (346)
++-..++++. +++.++|-|..+|-+.|.++...+.++|+++++ -..++.+ +-+++.+.|.+. -| |+++|-++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 4567777543 467899999999999999999999999999986 3444444 567788899998 57 46666566
Q ss_pred eEEE
Q psy160 272 NPLI 275 (346)
Q Consensus 272 ~~~~ 275 (346)
+.+.
T Consensus 85 khm~ 88 (133)
T PF02966_consen 85 KHMM 88 (133)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.025 Score=42.93 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC--------hhhHHhhCCCCcceEEE
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--------PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~--------~~l~~~~~i~~~Ptl~~ 162 (346)
.++++.+++ ++.|..+|||+|.+....|.+..-.. ..+..+.++. ..+.+.-|-+.+|+|++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~--~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR--GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc--CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 445555543 78999999999999888887764321 1244555542 23555668889999954
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.022 Score=43.87 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHhccceEEEEEEcC----CChhhHHHH--HHHHHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe--C
Q psy160 204 TMVEETQYLAVYFYKL----NCNICDQIL--EGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--N 270 (346)
Q Consensus 204 ~~~~~~~~~lv~F~~~----~c~~c~~~~--~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~--~ 270 (346)
...++.|.++|++|++ ||..|+... |.+.+. ++. ++.+... +...++..++++++|+++++- +
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 3455678999999999 888886442 333333 333 4443333 345689999999999998882 3
Q ss_pred Ce---EEEeecCccc
Q psy160 271 GN---PLIFEGENKI 282 (346)
Q Consensus 271 g~---~~~y~g~~~~ 282 (346)
++ ..+..|..+.
T Consensus 88 ~~~~vv~~i~G~~~~ 102 (116)
T cd02991 88 NRMTIVGRLEGLIQP 102 (116)
T ss_pred CceEEEEEEeCCCCH
Confidence 33 2346777753
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.008 Score=47.84 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhccC
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDN 135 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~ 135 (346)
.+++++|.|+++||+. |...++.+.++.+.+..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 4678999999999997 99999999999998854
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.028 Score=49.68 Aligned_cols=80 Identities=8% Similarity=0.132 Sum_probs=52.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE------------------------------------------
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK------------------------------------------ 142 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~------------------------------------------ 142 (346)
+..++.|..|.|++|+++.+++....+. .+..+.+.-
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~ 196 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPAS 196 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcccc
Confidence 5679999999999999998887654332 111111110
Q ss_pred eC---------ChhhHHhhCCCCcceEEEEec-CCcceecCCcchhHHHHHHHh
Q psy160 143 MA---------DPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 143 ~~---------~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~~~i~~fi~ 186 (346)
.. +..+.+++||++.|++++-.. |......|....+ .|.+.+.
T Consensus 197 ~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~-~L~~~l~ 249 (251)
T PRK11657 197 IPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPA-QLAEIMG 249 (251)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHH-HHHHHhC
Confidence 00 233677899999999998753 5544567877633 6766653
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.01 Score=47.24 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=34.5
Q ss_pred ccceEEEEEEcCCChh-hHHHHHHHHHHHhhcCcC---ceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNI-CDQILEGLEKVDDECDIY---GIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~-c~~~~~~~~~la~~~~~~---~i~~~~i 248 (346)
..++++|.||++||++ |....+.+.++.+++... ++.++.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~v 65 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFI 65 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEE
Confidence 4578999999999998 999999999999988653 3777776
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.023 Score=38.89 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=34.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
++.|+++||++|++..+.+.+..- .+...+++ . ..+.+..+...+|++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGI-----EFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----cEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 578999999999999988877652 23444443 2 23444567778887743
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.018 Score=41.77 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=39.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-----ChhhhhhCCC--ccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-----DPQLAKRYSI--KTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-----~~~~~~~~~i--~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|.++...+.++.....+..+....+. ..++.+..+- .++|++. -+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE
Confidence 5678899999999999999998755432233334442 2245555563 7899983 46654
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.086 Score=39.94 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=58.2
Q ss_pred ccHHHHHHHHhcc-ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCC----
Q psy160 197 ITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG---- 271 (346)
Q Consensus 197 l~~~~~~~~~~~~-~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g---- 271 (346)
-+.+++++++... +..+|.|+..--+ .....|.++|..+++ +..|+.+.+..+.+++++. .|.+++|++.
T Consensus 6 ~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~~~~~~~~~~~~-~~~vvl~rp~~~~~ 80 (107)
T cd03068 6 QTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTFDSEIFKSLKVS-PGQLVVFQPEKFQS 80 (107)
T ss_pred CCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEChHHHHHhcCCC-CCceEEECcHHHhh
Confidence 3567788887766 7888888875433 567889999999975 7889888788888899886 4888888543
Q ss_pred ----eEEEeecC
Q psy160 272 ----NPLIFEGE 279 (346)
Q Consensus 272 ----~~~~y~g~ 279 (346)
+...|.|.
T Consensus 81 k~e~~~~~~~~~ 92 (107)
T cd03068 81 KYEPKSHVLNKK 92 (107)
T ss_pred hcCcceeeeecc
Confidence 24567665
|
It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.025 Score=40.19 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=43.8
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+.-+++|+.+||++|.+....|.+.. .....+.++ ...+....|...+|++.+ +|+ +-|..+ +
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~g-----i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~---~igG~~---~ 73 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKG-----YDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK---LIGGSD---E 73 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcC-----CCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE---EEcCHH---H
Confidence 44578999999999999888886532 223344444 124555678899999964 553 233332 5
Q ss_pred HHHHH
Q psy160 181 VLQWL 185 (346)
Q Consensus 181 i~~fi 185 (346)
|.+|+
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 66665
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.012 Score=49.20 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=33.1
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|+|+||+.|.. .+.++++.+++++.++.+..+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 479999999999999964 789999999997656777666
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.044 Score=46.71 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=25.5
Q ss_pred CCcEEE-EEECCCChhHHHHHHHHHHHHhhccCCC
Q psy160 104 NEFVTV-FFYETDHKDSVKVLERLEKIDGETDNMD 137 (346)
Q Consensus 104 ~~~~lv-~F~~~~C~~c~~~~~~~~~~a~~~~~~~ 137 (346)
++.+++ .|.+.||+.|..-++.+.++.+++++.+
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~ 61 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG 61 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 443433 5779999999999999999888874433
|
|
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.042 Score=41.95 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=52.1
Q ss_pred EccHHHHHHHHhccceEEEEEE----cCCChhhHHHHHHHHHHHhhcC-cCceEEEEE---cChhhhhhCCCcc----cc
Q psy160 196 LITRVMLETMVEETQYLAVYFY----KLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKRYSIKT----FP 263 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~----~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~~~i~~----~P 263 (346)
.++.++..... ..+.++.|+ +..-..-..+...+.++|+.++ + ++.|+.+ ......+.||+++ .|
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 45666666664 334455544 2222334678999999999999 6 7888888 3344788999974 99
Q ss_pred EEEEEeCCeEEEe
Q psy160 264 ALVYFRNGNPLIF 276 (346)
Q Consensus 264 ti~~~~~g~~~~y 276 (346)
++++..... .+|
T Consensus 80 ~~~i~~~~~-~KY 91 (111)
T cd03073 80 VVAIRTAKG-KKY 91 (111)
T ss_pred EEEEEeCCC-Ccc
Confidence 999986433 345
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.047 Score=46.56 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=41.9
Q ss_pred ceEEE-EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhhhCC
Q psy160 210 QYLAV-YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKRYS 258 (346)
Q Consensus 210 ~~~lv-~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~~~ 258 (346)
+.++| .|++.||+.|....+.+.++..+++..++.++.+ .+..+++.||
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg 107 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN 107 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC
Confidence 44444 5789999999988888888877775333333332 2345666777
Q ss_pred Cc------cccEEEEEe-CCe
Q psy160 259 IK------TFPALVYFR-NGN 272 (346)
Q Consensus 259 i~------~~Pti~~~~-~g~ 272 (346)
+. ..|+.+++. +|+
T Consensus 108 v~~~~~g~~~p~~fiId~~G~ 128 (202)
T PRK13190 108 LIDENSGATVRGVFIIDPNQI 128 (202)
T ss_pred CccccCCcEEeEEEEECCCCE
Confidence 63 478888885 554
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.042 Score=46.76 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=31.8
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.||+ .||+.|....+.+.++.++++..++.++.+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigv 74 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGV 74 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688999998 499999999999999988886545555554
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.031 Score=47.55 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=31.0
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++.+++.||+. ||+.|..-++.+.+.++++.+.++.++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vi 72 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVV 72 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 356788899985 899999999999999999855444444
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.03 Score=49.41 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=28.0
Q ss_pred HHHHhcCCCCCCeEEEEe-CCceeeecCCCCCHHHHHHHHh
Q psy160 39 EAAAKYNIINLPSLVYFR-KQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 39 ~~c~~~~i~~~Ptl~~f~-~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
++..++||++.|++++-. +|.+....|-... +.+.+.+.
T Consensus 210 ~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~-~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANATPAIYYMDKDGTLQQVVGLPDP-AQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEecCCCCH-HHHHHHhC
Confidence 467789999999988865 4665566786655 46766654
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.006 Score=41.94 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCce
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
+.|+++||++|+++...|++..- .+..+.++ +. .+....+....|++ |.+|..
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ 60 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESLGI-----EFEEIDILEDGELREELKELSGWPTVPQI--FINGEF 60 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC-----cEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 36888999999999887776531 12233333 22 33445677788876 445543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.061 Score=40.83 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=42.9
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc----C----hhhhhhCCCccccEEEEEeCCeE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ----D----PQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~----~----~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.++++++++ ++.|..+||++|......|.+..-... .+....++ . ..+.+.-|-+++|++ |-+|+.
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~ 79 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTS 79 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEE
Confidence 344555544 567899999999999999988864322 34444442 2 234555677889998 555654
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.035 Score=39.33 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=34.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~ 162 (346)
++.|..+||++|.+....+++.. ..+....++ .+ .+.+..|...+|++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 36788999999999998887643 234455554 22 3344557888999843
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.019 Score=48.07 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.++++||.|+|+||+.|++ .|.++++.++++..++.++.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 4588999999999999975 889999999986655555543
|
|
| >KOG2640|consensus | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.007 Score=53.62 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 179 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 179 (346)
..++-..||+.||+..+...|++.-....+.. |....++ -+++..++++.+.|++.+-...-+..|.|.++-.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~- 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLA- 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHH-
Confidence 45788999999999999999998888776642 3333343 5678899999999999998776688899998844
Q ss_pred HHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHH
Q psy160 180 EVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 180 ~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~l 234 (346)
+|++|..+...-.+. -++.+-.......+|.+||++-....|...-+
T Consensus 153 sLv~fy~~i~~~~v~--------ie~~d~~~~~~~~ry~~~~~~t~l~~p~~~~~ 199 (319)
T KOG2640|consen 153 SLVNFYTEITPMSVL--------IEILDCTSCLEPVRYVPEGGPTILLAPDGNLF 199 (319)
T ss_pred HHHHHHHhhccchhc--------ccccCcccceeeeEeccccCcccccCcCCCcc
Confidence 999998776532211 11222222567788999998765444444333
|
|
| >KOG2640|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.0037 Score=55.31 Aligned_cols=118 Identities=13% Similarity=0.173 Sum_probs=83.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC----ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS----DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
+.||+.||+-.+...|+++-....+. .|....++ -+++..+|++.+.|++.+-...-+..|.|.++- ++++.|
T Consensus 81 ~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l-~sLv~f 157 (319)
T KOG2640|consen 81 LLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL-ASLVNF 157 (319)
T ss_pred ccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH-HHHHHH
Confidence 36999999999999999988877764 24444454 357889999999999998888778889998877 489999
Q ss_pred HhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhh
Q psy160 77 LTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE 132 (346)
Q Consensus 77 i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~ 132 (346)
..+-..- ....+. +.-.......+|.|||++..-..|...-+...
T Consensus 158 y~~i~~~---~v~ie~--------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 158 YTEITPM---SVLIEI--------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred HHhhccc---hhcccc--------cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence 8765431 001111 11112467889999999877666665555444
|
|
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.041 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C---hh----hHHhhCCCCcceEEEEecC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D---PR----YARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~---~~----l~~~~~i~~~Ptl~~~~~g 166 (346)
++.|..|||++|.+....|.+..- ....+.++ . .+ +.+.-|-..+|+|+ -+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i-----~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGV-----NPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECC
Confidence 689999999999998887766432 24555555 1 12 33334678999983 355
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >KOG3171|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.083 Score=44.31 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=64.6
Q ss_pred cEEEc-cHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEEE
Q psy160 193 RIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~ 266 (346)
.|..+ +.+.|-+.++. .-.++|..|-+.-.-|..+...+.=||..+. .++|.++ .+.....+|....+|+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSNTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeeccccchhhhcccCCceEE
Confidence 45555 56778776653 3467788999998999999999999999987 6889988 667778899999999999
Q ss_pred EEeCCeE
Q psy160 267 YFRNGNP 273 (346)
Q Consensus 267 ~~~~g~~ 273 (346)
+|++|+.
T Consensus 217 iYkgGeL 223 (273)
T KOG3171|consen 217 IYKGGEL 223 (273)
T ss_pred EeeCCch
Confidence 9999974
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.05 Score=37.85 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH---hhCCCCcceEEE
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR---KWGVTKLPAVVY 162 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~---~~~i~~~Ptl~~ 162 (346)
.+|..++|++|.+....|.+. +..+....++ ++.... +.|...+|++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 578899999999988877653 2234444554 333443 348889999865
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.053 Score=37.84 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-hh----hHHhhCCC-CcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-PR----YARKWGVT-KLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-~~----l~~~~~i~-~~Ptl~~ 162 (346)
+++|+.++|++|.+....|.+.. ..+....++. +. +.+..+.. .+|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-----i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-----VDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-----CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 57899999999999888887632 2344445542 23 33345766 8998753
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.013 Score=40.97 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=34.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~ 162 (346)
+++|+.+||++|++....|++.. ..+....++ ...+.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~g-----i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKG-----LPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCC-----CceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 67899999999999888777632 224444444 223555667788898844
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.16 Score=36.24 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=51.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCC---cceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRF---PSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~---~~~y~g~~~~~~~i~~ 183 (346)
+++|..|.|+-|..+...+..+.... ...+..++++ ++.+..+|+. ..|.+.+=..+. .....+.++ .+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d-~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD-EEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB--HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCC-HHHHHH
Confidence 68999999999999999998876543 2335566665 6789999996 699877643111 233445565 447888
Q ss_pred HHh
Q psy160 184 WLI 186 (346)
Q Consensus 184 fi~ 186 (346)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 864
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.077 Score=38.55 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=40.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----c------------------------------ChhhhhhCC
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----Q------------------------------DPQLAKRYS 258 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~------------------------------~~~~~~~~~ 258 (346)
+.|+.+.|++|..+.+.+.++.....+ ++.+... . +...++.+|
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999998755443 5554443 1 123466788
Q ss_pred CccccEEEEEe
Q psy160 259 IKTFPALVYFR 269 (346)
Q Consensus 259 i~~~Pti~~~~ 269 (346)
+.+.|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998865
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.028 Score=39.09 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=40.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
+++|..+||++|.+....+.+.. .......++. ..+....|...+|.+. -+|+. -|.. ++|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~-----i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~---igg~---~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENG-----ISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL---IGGS---DDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE---EeCH---HHHHH
Confidence 68899999999999887776532 2233444442 2233345888999984 35542 2432 26777
Q ss_pred HH
Q psy160 184 WL 185 (346)
Q Consensus 184 fi 185 (346)
|+
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 65
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=44.96 Aligned_cols=38 Identities=3% Similarity=0.137 Sum_probs=28.4
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+|+.|++.||+.|....+.+.++..++...++.++.+
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigI 68 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGL 68 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34677889999999998899998888875434444443
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.11 Score=44.33 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=29.3
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.|++.||+.|....+.+.++.+++++.++.++.+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigv 65 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGL 65 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 44557889999999999999999998886545555544
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.11 Score=46.01 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=27.8
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCc
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDI 138 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i 138 (346)
++.+++.|| +.||+.|..-++.+.+.++++.+.++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv 133 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGV 133 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 456677777 79999999999999999888854433
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.13 Score=37.37 Aligned_cols=56 Identities=27% Similarity=0.238 Sum_probs=39.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----------------------------------ChhhHHhh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----------------------------------DPRYARKW 152 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----------------------------------~~~l~~~~ 152 (346)
++.|+++.|++|..+.+.+.++...... ++.+.... ...++.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999998633322 23333211 23456788
Q ss_pred CCCCcceEEEEe
Q psy160 153 GVTKLPAVVYFR 164 (346)
Q Consensus 153 ~i~~~Ptl~~~~ 164 (346)
|+.+.||+++..
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999999864
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.018 Score=40.88 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=32.1
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCc
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQV 59 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~ 59 (346)
.|..+||++|.+....|++..- ......++ ++ ++....+....|++ |-+|.
T Consensus 3 ly~~~~Cp~C~~a~~~L~~~~i-----~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSSKGV-----TFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred EEecCCChhHHHHHHHHHHcCC-----CcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 5778999999999887775421 12333443 22 34445678889986 44554
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.6 Score=36.30 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcEEEEeC-ChhhHHhhCCCCcc-eEEEEecCC
Q psy160 94 RRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DITFVKMA-DPRYARKWGVTKLP-AVVYFRHRF 167 (346)
Q Consensus 94 ~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~~~~~~-~~~l~~~~~i~~~P-tl~~~~~g~ 167 (346)
....++.+.+ ++.+++-|...|-+.|.++-..+.+++..+++. -|..+.++ -+++.+-|.+. -| |++||-+++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 4455665533 467889999999999999999999999998665 24444444 56788899999 56 577774555
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.15 Score=36.40 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=33.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chhh---HHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRY---ARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l---~~~~~i~~~Ptl~~ 162 (346)
+.+|..+||++|......|.+. +..+..+.++ .+.. .+..|...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 6789999999999888777542 3234444554 3332 23457788999965
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=44.66 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=27.8
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+|+.|++.||+.|....+.+.+++.+++..++.++.+
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vigv 75 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGL 75 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 44556779999999998889998888885434444433
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.021 Score=39.87 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE--EcC-Ch----HHHHhcCCCCCCeE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV--KIS-DT----EAAAKYNIINLPSL 52 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~--~~~-~~----~~c~~~~i~~~Ptl 52 (346)
+.|+.|||++|++....|++ .||.+. .++ ++ ++....+-...|++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 35788999999988776664 344443 333 22 45556677788976
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.16 Score=43.27 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=28.1
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.+|+.|.+.||+.|...++.+.++++++++.++.++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vi 63 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLI 63 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEE
Confidence 345567899999999999999999999855444444
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.038 Score=39.28 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=37.2
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC---hhhhhhCCCccccEEEEEeCCeE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD---PQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~---~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.-++.|..+||++|.+....|.+..-. .....+ .+ ..+.+..+..++|.+. .+|+.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~-----y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYD-----FEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCC-----cEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 446778999999999998888765322 223333 12 3455556888999985 46654
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.034 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.400 Sum_probs=38.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDM--VKISD----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
+.|..+||+.|.+....|.+. |+.+ ..++. ..+....|....|++ |.+|..+ |+ .++|.
T Consensus 4 ~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---gg---~~~l~ 68 (72)
T cd03029 4 SLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---GG---SDDLE 68 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---eC---HHHHH
Confidence 368889999999987766643 4443 33332 223344688899986 5566542 32 25777
Q ss_pred HHH
Q psy160 75 TWL 77 (346)
Q Consensus 75 ~~i 77 (346)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 775
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=44.68 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=43.9
Q ss_pred ceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhhhC
Q psy160 210 QYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKRY 257 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~~ 257 (346)
+.+++.|| +.||+.|....+.+.++.+++++.++.++.+ .+..+++.|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 46677777 7999999998898888888875333333333 234567777
Q ss_pred CCc-----cccEEEEEe-CCe
Q psy160 258 SIK-----TFPALVYFR-NGN 272 (346)
Q Consensus 258 ~i~-----~~Pti~~~~-~g~ 272 (346)
|+. ..|+..++. +|+
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~ 199 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGV 199 (261)
T ss_pred CCCCcCCceecEEEEECCCCE
Confidence 774 478888885 665
|
|
| >KOG3170|consensus | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=41.26 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=59.6
Q ss_pred CcEEEccHHHHHH-HH-hccc-eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLET-MV-EETQ-YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~-~~-~~~~-~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.|..+++.++.. +. .+.. .|+|..|...-+.|..+...++.||.+|. .++|+++....-...|-=...||+++|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTCIPNYPESNLPTLLVY 168 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEecccccccCCCcccCCCeEEEe
Confidence 5777888888865 43 3444 45566888888999999999999999997 689999833333344555678999999
Q ss_pred eCCe
Q psy160 269 RNGN 272 (346)
Q Consensus 269 ~~g~ 272 (346)
..|.
T Consensus 169 ~~G~ 172 (240)
T KOG3170|consen 169 HHGA 172 (240)
T ss_pred ecch
Confidence 9884
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.19 Score=37.35 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEE
Q psy160 95 RMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVY 162 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~ 162 (346)
+-.++++.+++ +|.|.. |||++|.+....|.+..- ....+.++ ++ .+.+.-|-..+|++.+
T Consensus 3 ~~v~~~i~~~~--Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i-----~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 3 ERIKEQIKENP--VVLYMKGTPQFPQCGFSARAVQILKACGV-----PFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHHhccCC--EEEEEccCCCCCCCchHHHHHHHHHHcCC-----CEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 34556665654 344543 899999998887766432 23333443 22 3445567778898854
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.2 Score=43.42 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=26.5
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
+|+.|.+.||+.|...++.+.++++++++.++.++
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vi 73 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELI 73 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 34456689999999999999999988854444433
|
|
| >KOG3170|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.61 Score=38.91 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred ceeecCHHHHHH-HHhcC-CcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDK-LLEEN-EFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~-~~~~~-~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.|..++-.++-+ ..+.+ ..| +|..|...-+.|.-+...+..+|..+.. +.|+++-.......|-=...|||++|.
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~cIpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTCIPNYPESNLPTLLVYH 169 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccccCCCcccCCCeEEEee
Confidence 788888665544 44444 455 6667999999999999999999998854 788887655555566667889999999
Q ss_pred cCC-------cceecCCcchhHHHHHHHh
Q psy160 165 HRF-------PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 165 ~g~-------~~~y~g~~~~~~~i~~fi~ 186 (346)
.|. +..+.|...+.+++..++-
T Consensus 170 ~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 170 HGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred cchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 875 2235555555534444443
|
|
| >cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.18 Score=37.14 Aligned_cols=82 Identities=13% Similarity=0.211 Sum_probs=57.6
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----cChhhhhhCCCc----ccc-EEEE
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-----QDPQLAKRYSIK----TFP-ALVY 267 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~----~~P-ti~~ 267 (346)
+..+|..++.....++|.|..+-- .-......+.++|+..+| .-.++.+ +...+|+++.+. .-| .+.-
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 347888999998899999886542 223556789999999997 4444544 457799999997 444 3556
Q ss_pred EeCCeE-EEeecCcc
Q psy160 268 FRNGNP-LIFEGENK 281 (346)
Q Consensus 268 ~~~g~~-~~y~g~~~ 281 (346)
|++|.+ ..|+...+
T Consensus 86 YKdG~fHkdYdR~~t 100 (112)
T cd03067 86 YKDGDFHTEYNRQLT 100 (112)
T ss_pred ccCCCccccccchhh
Confidence 788874 34655443
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.075 Score=42.58 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhcc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETD 134 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~ 134 (346)
.+..++.|+.++|++|.++.|.+.++.....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 4678999999999999999999998776653
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.16 Score=43.79 Aligned_cols=35 Identities=3% Similarity=0.009 Sum_probs=27.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
+|+.|.+.||+.|..-++.+.+++.++.+.++.++
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vi 66 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKELNTELI 66 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 45677899999999999999999998855444444
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=37.03 Aligned_cols=65 Identities=15% Similarity=0.365 Sum_probs=39.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcC-ChH---HHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKIS-DTE---AAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~-~~~---~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
.|+.+||++|++....|++ .||.+ +.++ +++ .....+....|++++ ++.. ..| ... +.|.+
T Consensus 5 lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~--~~G-f~~-~~l~~ 71 (81)
T PRK10329 5 IYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS--WSG-FRP-DMINR 71 (81)
T ss_pred EEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE--Eec-CCH-HHHHH
Confidence 5778999999988776643 46665 4444 333 234567788898865 3332 223 222 46666
Q ss_pred HHhc
Q psy160 76 WLTS 79 (346)
Q Consensus 76 ~i~~ 79 (346)
.+..
T Consensus 72 ~~~~ 75 (81)
T PRK10329 72 LHPA 75 (81)
T ss_pred HHHh
Confidence 6543
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.027 Score=39.36 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=31.3
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC-hH----HHHhcCCC-CCCeEEEEeCCce
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKISD-TE----AAAKYNII-NLPSLVYFRKQVP 60 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~-~~----~c~~~~i~-~~Ptl~~f~~~~~ 60 (346)
.|..+||++|.+....|++. |+.+ +.++. ++ +-...+.. ..|++ |-+|..
T Consensus 4 ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ 61 (75)
T cd03418 4 IYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVH 61 (75)
T ss_pred EEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEE
Confidence 57789999999988777643 4444 34432 22 33446766 88976 445543
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >KOG2603|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.25 Score=44.03 Aligned_cols=82 Identities=21% Similarity=0.367 Sum_probs=63.9
Q ss_pred cccCcEEEccHHHHHHHHhc---cceEEEEEEcC----CChhhHHHHHHHHHHHhhcC-------cCceEEEEE---cCh
Q psy160 189 KTEDRIELITRVMLETMVEE---TQYLAVYFYKL----NCNICDQILEGLEKVDDECD-------IYGIHMVKI---QDP 251 (346)
Q Consensus 189 ~~~~~v~~l~~~~~~~~~~~---~~~~lv~F~~~----~c~~c~~~~~~~~~la~~~~-------~~~i~~~~i---~~~ 251 (346)
+.+..|..++.+++..++.. +-.++|+|.|. .|.-|+....++.-+|.... +.++-|..+ +.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 45668889999999998763 33567777764 69999999999999988763 123556666 678
Q ss_pred hhhhhCCCccccEEEEEeC
Q psy160 252 QLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 252 ~~~~~~~i~~~Pti~~~~~ 270 (346)
+.-+.+++.+.|++++|..
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P 135 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSP 135 (331)
T ss_pred HHHHHhcccCCCeEEEeCC
Confidence 8999999999999999954
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.18 Score=36.15 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=34.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~ 162 (346)
+++|..+||++|.+....+++.. .......++ . ..+.+..|...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-----i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-----VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56888999999999888887643 234444554 2 23445567888998843
|
|
| >PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.086 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=19.9
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhc
Q psy160 2 YINDENCPECDDILEELEHIDGDAD 26 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~ 26 (346)
+|+.|.|+.|=.++|.+.++...++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC
Confidence 5889999999999999999999873
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.24 Score=42.05 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=30.4
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.||+ .||+.|....+.+.++++++...++.++.+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4577888885 789999887788888888887545655555
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.14 Score=35.53 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=31.9
Q ss_pred EEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh---hCCCccccEEEE
Q psy160 214 VYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK---RYSIKTFPALVY 267 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~---~~~i~~~Pti~~ 267 (346)
..|..++|++|......+++..- .+....+ .++.... ..|..++|.+++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i-----~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGI-----AFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC-----ceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 45778999999998888876422 3334444 3443333 347788999744
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.23 Score=36.86 Aligned_cols=69 Identities=17% Similarity=0.370 Sum_probs=40.5
Q ss_pred HHHHHHHhccceEEEEEEc-----CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChh----hhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYK-----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~-----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~i~~~Pti~~~~ 269 (346)
+..++++++++.+ | |.. |||++|......|.++.-. .....+ .+++ +.+..|-..+|.+ |.
T Consensus 3 ~~v~~~i~~~~Vv-v-f~kg~~~~~~Cp~C~~ak~lL~~~~i~-----~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi 73 (97)
T TIGR00365 3 ERIKEQIKENPVV-L-YMKGTPQFPQCGFSARAVQILKACGVP-----FAYVNVLEDPEIRQGIKEYSNWPTIPQL--YV 73 (97)
T ss_pred HHHHHHhccCCEE-E-EEccCCCCCCCchHHHHHHHHHHcCCC-----EEEEECCCCHHHHHHHHHHhCCCCCCEE--EE
Confidence 3445566665443 3 332 8999999999888886433 333344 3333 3344566678877 55
Q ss_pred CCeEEEeecCc
Q psy160 270 NGNPLIFEGEN 280 (346)
Q Consensus 270 ~g~~~~y~g~~ 280 (346)
+|+. -|+.
T Consensus 74 ~g~~---iGG~ 81 (97)
T TIGR00365 74 KGEF---VGGC 81 (97)
T ss_pred CCEE---EeCh
Confidence 6653 3554
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.098 Score=39.01 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=37.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C---h----hhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D---P----QLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~---~----~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
++.|..+||++|.++...+.++.-. .....++ + . .+.+..|.+++|.+ |-+|+.+ |+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~-----~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i---GG~d 76 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVN-----PAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV---GGLE 76 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-----CEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE---cCHH
Confidence 5678999999999998888876433 3344441 2 1 23333466788987 5667543 5543
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.2 Score=42.49 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 104 NEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 104 ~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++.+++.||+ .||+.|...++.+.++++++...++.++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~ 75 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLA 75 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4667788885 78999998889999999998655555443
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.32 Score=41.85 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=28.3
Q ss_pred eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 211 ~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++.|++.||+.|....+.+.+++.+++..++.++.+
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34446779999999998899999988886444555444
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.14 Score=36.54 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=32.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--C----hhhHHhh-CCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--D----PRYARKW-GVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~----~~l~~~~-~i~~~Ptl~~ 162 (346)
++.|..++|++|.+....|.+..- ....+.++ . .+..++. |.+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~-----~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGV-----DYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCC-----CcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 578999999999988877764322 22232332 2 1333444 7899999887
|
|
| >KOG3171|consensus | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.44 Score=40.14 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=62.6
Q ss_pred cCceeecC-HHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CChhhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--ADPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~~~l~~~~~i~~~Pt 159 (346)
-..|.+++ -+.|-..+... -..+|..|.+.-+-|..+...+.=+|..+.. +.|.++ .......+|..+..|+
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccccchhhhcccCCce
Confidence 34678886 46776666554 3568889999999999999999989888755 555554 4556678999999999
Q ss_pred EEEEecCCc
Q psy160 160 VVYFRHRFP 168 (346)
Q Consensus 160 l~~~~~g~~ 168 (346)
|.+|++|+.
T Consensus 215 LliYkgGeL 223 (273)
T KOG3171|consen 215 LLIYKGGEL 223 (273)
T ss_pred EEEeeCCch
Confidence 999999873
|
|
| >KOG1752|consensus | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.74 Score=34.57 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=38.1
Q ss_pred HHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------ChhhHHhhCCCCcceEEE
Q psy160 96 MLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------~~~l~~~~~i~~~Ptl~~ 162 (346)
...+.+.+++ +|.|..+||+.|..+...|... +....++.+| +..+.+--+-+.+|.+++
T Consensus 6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~~-----~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSDL-----GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC--EEEEECCcCchHHHHHHHHHhC-----CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3455555544 5789999999999977777762 2235566555 222333334568898776
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.53 Score=36.06 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hHHhhCCCCcceEEE
Q psy160 95 RMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YARKWGVTKLPAVVY 162 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~~~~~i~~~Ptl~~ 162 (346)
+-.++++.+++ +|.|.. |||++|.+....|....-. ...+.++ .+. +.+.-|-..+|.|++
T Consensus 6 ~~v~~~I~~~~--Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 6 EKIQRQIAENP--ILLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHhcCC--EEEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 44566666655 345555 6999999988888775422 3334443 222 333446677887765
|
|
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.33 Score=35.37 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEecCC
Q psy160 99 KLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 99 ~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+++.+++ +|.|.. |||++|.+....+.+..-. +..+.++ ...+.+..|-..+|++++ +|+
T Consensus 3 ~~i~~~~--vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-----y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 3 KLIKENP--VVLFMKGTPEEPRCGFSRKVVQILNQLGVD-----FGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred hhhccCC--EEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-----eEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 3444443 344544 7999999988777665422 3333433 233455668889999843 553
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.28 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=26.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
.++.++.|+.++|++|..+.+.+.++...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 4678899999999999999999999876653
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.095 Score=37.55 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=31.6
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-Ch----HHHHhcCCCCCCeEEEEeCCce
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DT----EAAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
.|..+||++|++....|++.-- ....+.++ +. ++.+..+....|++ |.+|..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~~gi-----~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ 62 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNSKGV-----SFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQH 62 (83)
T ss_pred EEECCCChhHHHHHHHHHHcCC-----CcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 4667999999998877764321 12334443 22 34455677888977 445543
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.31 Score=34.72 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=31.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC----hhhhhhC-CCccccEEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD----PQLAKRY-SIKTFPALVY 267 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~----~~~~~~~-~i~~~Pti~~ 267 (346)
++.|..++|++|.+....+.+..-.|. ...+ .. .+..++. |.+++|.|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~-----~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYE-----EIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcE-----EEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 456788999999988888885543322 2222 11 1334444 6788998754
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.92 Score=32.28 Aligned_cols=54 Identities=31% Similarity=0.581 Sum_probs=41.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCccccEEEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~~~Pti~~~ 268 (346)
++.|..+.|+-|..+...+.+++.... ..+..+.| +++++..+|+. ..|.+.+-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEc
Confidence 577889999999999999998876644 34666666 78889999996 58986543
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.47 Score=34.56 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=31.3
Q ss_pred CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cCh----hhhhhCCCccccEEEEEeCCeE
Q psy160 219 LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 219 ~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
|||++|......+.+..-. .....+ .++ .+.+.-|-+++|.+ |.+|+.
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~-----y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVD-----FGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHcCCC-----eEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 7999999998888877533 333344 233 33444567788987 557764
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.68 Score=38.11 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=27.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
..++.++.|+.+.|++|..+.+.+..+.+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 4577899999999999999999999888876
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.75 Score=37.84 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.5
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+.++.++.|+...|++|..+.+.+..+.+++.+ ++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 456789999999999999999999999888754 5555443
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.63 Score=40.06 Aligned_cols=40 Identities=5% Similarity=0.004 Sum_probs=30.1
Q ss_pred CCcEE-EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 104 NEFVT-VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 104 ~~~~l-v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
++.++ +.|.+.||+.|...++.+.+++.++++.++.++.+
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vigv 73 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGL 73 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34333 46678999999999999999999996555555543
|
|
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.5 Score=41.76 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch---hhHHh---------hCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP---RYARK---------WGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~---~l~~~---------~~i~~~Ptl~~ 162 (346)
++.|+.|||++|.+....+.+.. .....+.++ .+ .+.++ .|.+.+|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~g-----i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAND-----IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-----CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 68899999999998877776632 223444554 22 11112 36788999965
|
|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.4 Score=35.48 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhc--CcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDEC--DIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~--~~~~i~~~~i 248 (346)
.++.++.|+...|++|.++.+.+.++-+++ .+ .+.+...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~ 52 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFR 52 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEE
Confidence 467899999999999999999999888887 44 6666655
|
... |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.2 Score=35.99 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCcEEEEe
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKM 143 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~ 143 (346)
.+..++.|+.+.|++|.++.+.+.++-+.+ ...++.+.-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~ 52 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFR 52 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEE
Confidence 367899999999999999999998888776 2334555543
|
... |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.1 Score=36.43 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=36.0
Q ss_pred CcEEEEEE-CCCChhHHHH-HHHHHHHHhhccCCCc-EEE--EeC----ChhhHHhhCC-CCcc
Q psy160 105 EFVTVFFY-ETDHKDSVKV-LERLEKIDGETDNMDI-TFV--KMA----DPRYARKWGV-TKLP 158 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~-~~~~~~~a~~~~~~~i-~~~--~~~----~~~l~~~~~i-~~~P 158 (346)
+.+++.|| ..||+.|..- ++.|.+...++.+.++ .++ ..| ..+.++++++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 44555555 5699999987 9999999999865444 233 344 4456667776 2444
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=87.12 E-value=1.2 Score=36.14 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=34.4
Q ss_pred ceEEEEEE-cCCChhhHHH-HHHHHHHHhhcCcCce-EEEEE------cChhhhhhCCC
Q psy160 210 QYLAVYFY-KLNCNICDQI-LEGLEKVDDECDIYGI-HMVKI------QDPQLAKRYSI 259 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~-~~~~~~la~~~~~~~i-~~~~i------~~~~~~~~~~i 259 (346)
++++|.|| +.||+.|... .+.|.+...++...++ .++.+ ....+++++++
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 34555555 6799999987 8899999888865455 35555 33456666666
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=1.7 Score=33.37 Aligned_cols=69 Identities=22% Similarity=0.447 Sum_probs=38.8
Q ss_pred HHHHHHHhccceEEEEEEc-----CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhh----CCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYK-----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKR----YSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~-----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~----~~i~~~Pti~~~~ 269 (346)
+-.++++++++.+ .|.. |||++|......|..+.-.+ ....+ .++++... -|-+.+|. +|-
T Consensus 6 ~~v~~~I~~~~Vv--vf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~-----~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI 76 (115)
T PRK10824 6 EKIQRQIAENPIL--LYMKGSPKLPSCGFSAQAVQALSACGERF-----AYVDILQNPDIRAELPKYANWPTFPQ--LWV 76 (115)
T ss_pred HHHHHHHhcCCEE--EEECCCCCCCCCchHHHHHHHHHHcCCCc-----eEEEecCCHHHHHHHHHHhCCCCCCe--EEE
Confidence 3345566665433 3444 69999999999888875333 23344 34333322 23344555 466
Q ss_pred CCeEEEeecCc
Q psy160 270 NGNPLIFEGEN 280 (346)
Q Consensus 270 ~g~~~~y~g~~ 280 (346)
+|+.+ |+.
T Consensus 77 ~G~~I---GG~ 84 (115)
T PRK10824 77 DGELV---GGC 84 (115)
T ss_pred CCEEE---cCh
Confidence 67644 654
|
|
| >KOG1752|consensus | Back alignment and domain information |
|---|
Probab=85.97 E-value=2.3 Score=31.98 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=32.0
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC----hH----HHHhcCCCCCCeEEEEeCCce
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD----TE----AAAKYNIINLPSLVYFRKQVP 60 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~----~c~~~~i~~~Ptl~~f~~~~~ 60 (346)
|.|..+||+.|.++...|.+. ..+-.++..|. .+ +..--+-+..|.+. -+|+.
T Consensus 17 VifSKs~C~~c~~~k~ll~~~-----~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF--I~Gk~ 77 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDL-----GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF--IGGKF 77 (104)
T ss_pred EEEECCcCchHHHHHHHHHhC-----CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--ECCEE
Confidence 578999999999977767662 22345566652 12 22233455778654 45443
|
|
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.78 E-value=1.7 Score=43.15 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=56.5
Q ss_pred EEccHHHHHHHHhccceEEEEEEcCCChhhHHHH-HHHH--HHHhhcCcCceEEEEE---cChhhhhhCC--------Cc
Q psy160 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQIL-EGLE--KVDDECDIYGIHMVKI---QDPQLAKRYS--------IK 260 (346)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~-~~~~--~la~~~~~~~i~~~~i---~~~~~~~~~~--------i~ 260 (346)
..-..+.|.+....++|+||-....||..|.-|. ..|+ ++|..++. ++.-++| +-|++-+.|. --
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 3457889999999999999999999999998764 3443 67777765 6666677 4455555443 34
Q ss_pred cccEEEE-EeCCeEE
Q psy160 261 TFPALVY-FRNGNPL 274 (346)
Q Consensus 261 ~~Pti~~-~~~g~~~ 274 (346)
|.|--++ -++|+|.
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 7895554 4677764
|
|
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=82.03 E-value=2.6 Score=40.15 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=29.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcC-Ch---HHHHh---------cCCCCCCeEEE
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDM--VKIS-DT---EAAAK---------YNIINLPSLVY 54 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~-~~---~~c~~---------~~i~~~Ptl~~ 54 (346)
+.|+.||||+|++...-|.+ .||.+ +.++ ++ ++..+ .|.+..|++.+
T Consensus 5 ~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 5 RIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 36889999999888765554 45554 3444 22 22222 46778898855
|
|
| >cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=81.75 E-value=12 Score=27.50 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=44.0
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+..++.|..+. ..|.++..-++++|..-.+ |.+...+... ..|++.+..+|+ .++|.|-..-. ++.
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk--I~~~~~~~~~--------~~P~~~i~~~~~~~gIrF~GiP~Gh-Ef~ 87 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASLSDK--ITLEEDNDDE--------RKPSFSINRPGEDTGIRFAGIPMGH-EFT 87 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHhCCc--eEEEEecCCC--------CCCEEEEecCCCcccEEEEecCCch-hHH
Confidence 45577777655 7777777766666654322 4443322211 479999987764 47888876644 677
Q ss_pred HHHh
Q psy160 183 QWLI 186 (346)
Q Consensus 183 ~fi~ 186 (346)
.|+.
T Consensus 88 Slil 91 (94)
T cd02974 88 SLVL 91 (94)
T ss_pred HHHH
Confidence 7764
|
AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX- |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.95 E-value=4.7 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=38.7
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKM--A----DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----~~~l~~~~~i~~~P 158 (346)
.++.++++||. .+++-|-.-+-.|+....++++.+..++-+ | +.+++++++++ +|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~ 90 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FP 90 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ce
Confidence 34578888885 478888888888888888886666555543 3 55677777776 44
|
|
| >cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=80.44 E-value=7.4 Score=28.59 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=40.8
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCc--eeeecCCCCCHHHHHHHHh
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQV--PLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~--~~~y~G~~~~~~~i~~~i~ 78 (346)
.|..+. ..|+.+..-++.+|+.-+. |.+...+... ..|++.+..++. -+.|.|-+..+ ++..|+.
T Consensus 25 ~f~~~~-~~~~e~~~ll~e~a~lSdk--I~~~~~~~~~--------~~P~~~i~~~~~~~gIrF~GiP~Gh-Ef~Slil 91 (94)
T cd02974 25 ASLDDS-EKSAELLELLEEIASLSDK--ITLEEDNDDE--------RKPSFSINRPGEDTGIRFAGIPMGH-EFTSLVL 91 (94)
T ss_pred EEeCCC-cchHHHHHHHHHHHHhCCc--eEEEEecCCC--------CCCEEEEecCCCcccEEEEecCCch-hHHHHHH
Confidence 355544 7788887777777776543 3332211111 469999987763 37899987775 7776654
|
AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX- |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-14
Identities = 31/227 (13%), Positives = 79/227 (34%), Gaps = 18/227 (7%)
Query: 86 KNEIEEVNRRMLDKLLEENEFVTVFFYET--DHKDSVKVLERL----EKIDGETDNMDIT 139
+ + VN + + ++ E + + ++E D K S + E E ++ +
Sbjct: 12 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
Query: 140 FVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIEL 196
F + D A+K G+T+ ++ F+ Y G+ + ++++L+ + +
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEF-SADTLVEFLLDVLEDPVELI 130
Query: 197 ITRVMLETMVEETQYLAV--YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLA 254
L+ + + YF + E E+ + D ++A
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFF-----ATFDSKVA 185
Query: 255 KRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
K+ ++K + ++ +K I ++ S +
Sbjct: 186 KKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLR 231
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 5e-11
Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 16/226 (7%)
Query: 16 EELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEK 72
LE + G+ + D A K + S+ F++ + YDG+ +
Sbjct: 56 LILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEF-SADT 114
Query: 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE 132
++ +L ++ E + + E+E + +++ + K + +
Sbjct: 115 LVEFLLDVLEDPVELIEGERELQAFEN--IEDEIKLIGYFKNKDSEHYKAFKEAAEEFHP 172
Query: 133 TDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVLQWLITQKT 190
I F D + A+K + KL + ++ P + EEE++ + + +
Sbjct: 173 ----YIPFFATFDSKVAKKLTL-KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNF-VEEHR 226
Query: 191 EDRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKV 234
+ + + E+ V F + + LE L+ V
Sbjct: 227 RSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSV 272
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 2e-14
Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 19/219 (8%)
Query: 79 SQDVFEIKNE--IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE--TD 134
S+D E+K E + +N D + + + V + FY + EKI
Sbjct: 5 SEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK 64
Query: 135 NMDITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191
+ I K+ + A ++ V+ P + + Y G +EE++ +
Sbjct: 65 DPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGS-RTQEEIVAKVREVSQP 123
Query: 192 DRIELITRVM------LETMVEETQYLAVYFYKLNCNICDQILEGLEKV-----DDECDI 240
D + + +V + + V FY C C ++ EK I
Sbjct: 124 DWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPI 183
Query: 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+ + LAKR+ + +P L FR G P + G
Sbjct: 184 PLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGP 222
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 12/188 (6%)
Query: 9 PECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLF 68
PE + I L+ D ID + A+++++ P++ +K + Y+G
Sbjct: 52 PEYEKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYPTIKILKKGQAVDYEGS-R 108
Query: 69 DEEKILTWLTSQ---DVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER 125
+E+I+ + D + + D+++ + + + V FY K+
Sbjct: 109 TQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPE 168
Query: 126 LEKI--DGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180
EK + + I K+ A+ A+++ V+ P + FR P Y G E+
Sbjct: 169 YEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPR-EKYG 227
Query: 181 VLQWLITQ 188
++ ++I Q
Sbjct: 228 IVDYMIEQ 235
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 8 CPECDDILEELEHI--DGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLL 62
C C + E E + I + K+ ++T+ A ++++ P+L FRK P
Sbjct: 159 CGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD 218
Query: 63 YDGDLFDEEKILTWLTSQ 80
Y+G ++ I+ ++ Q
Sbjct: 219 YNGP-REKYGIVDYMIEQ 235
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-13
Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 19/279 (6%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYD 64
P +L EL + + + YNI P+ V F + Y+
Sbjct: 467 SPPSRALLPELRKA-STLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYE 525
Query: 65 GDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLE 124
G E+IL ++ + + L K + +E V FY S ++
Sbjct: 526 GH-HSAEQILEFIEDLRNPSVV-SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMP 583
Query: 125 RLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFRHR-----FPSIYRGDLS 176
+++ T I + + + V + P + ++ + Y G
Sbjct: 584 EWKRM-ARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNR 642
Query: 177 EEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDD 236
+ + W + + I+L + E +++ + V FY E +
Sbjct: 643 DAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLAR 702
Query: 237 ECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272
+ K+ PQ ++ IK +P++ ++
Sbjct: 703 MIKGK-VRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYER 740
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-08
Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 15/253 (5%)
Query: 37 DTEAAAKYNIINLPSLVYFRK-QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRR 95
D + + PSL FR + Y+GD +E ++ + +++ + E++
Sbjct: 176 DRMLCRMKGVNSYPSLFIFRSGMAAVKYNGD-RSKESLVAFAMQH----VRSTVTELSTG 230
Query: 96 MLDKLLEENEFVTVFFYET---DHKDSVKVLERLEKIDGETDNMDITFVKM-ADPRYARK 151
+E V + T +D + RL +++ +V A +
Sbjct: 231 NFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKS 290
Query: 152 WGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL-ITQKTEDRIELITRVMLETMVEETQ 210
T + + L I + + + + +
Sbjct: 291 LDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLA 350
Query: 211 YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267
+ + + L+K+ I +V+ P + + P+L
Sbjct: 351 HHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF-QPSLAV 409
Query: 268 FRNGNPLIFEGEN 280
F+ +E +
Sbjct: 410 FKGQGTKEYEIHH 422
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-07
Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 21/285 (7%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMV----KISDTEAAAKYNIINLPSLVYFRKQVPLLY 63
C + +D L + G+ V + + + +
Sbjct: 251 CSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDR 310
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL 123
+ L E+ + + VFF+ ++++
Sbjct: 311 EKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPE 370
Query: 124 ERLEKIDGETDNMDITFVKM---ADPRYARKWGVTKLPAVVYFR---HRFPSIYRGDLSE 177
L+K+ N I V+ + P V + P++ F+ + I+ G
Sbjct: 371 --LKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKIL 427
Query: 178 EEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE 237
+ +L + L + + V F+ +L L K
Sbjct: 428 YD-ILAFAKESVNSHVTTL---GPQNFPASDKEPWLVDFFAPWSPPSRALLPELRKASTL 483
Query: 238 CDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGE 279
+ + + L Y+I+ +P V F + +EG
Sbjct: 484 LY-GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGH 527
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 8e-09
Identities = 67/416 (16%), Positives = 135/416 (32%), Gaps = 102/416 (24%)
Query: 2 YINDENCPECDDILEELE----HIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK 57
++N +NC + +LE L+ ID + I + + + L K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSK 241
Query: 58 QVP--LL-----YDG---DLFDEE-KILTWLTSQD--VFEIKNEIEEVNRRM--LDKLLE 102
LL + + F+ KIL LT++ V + + + + L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 103 ENEFVTVF--FYETDHKD----SVKVLERLEKIDGETDNMDITFVKMADP-RYARKWGVT 155
+E ++ + + +D + R I E + D ++ +T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLT 356
Query: 156 KL---------PAVVYFRHRFP--SIYRGDLSEEEEVLQ--WLITQKTEDRI---ELITR 199
+ PA +R F S++ +L W K++ + +L
Sbjct: 357 TIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 200 VMLETMVEETQY--LAVYF---------YKLNCNICDQ--ILEGLEKVD---DECDIY-- 241
++E +E+ ++Y Y L+ +I D I + + D D Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 242 ---GIHMVKIQDPQLAKRYSIKTFPALVY--FRNGNPLIFEGENKILKGTYIGTYISTKA 296
G H+ I + +R ++ F + + FR F E KI + +
Sbjct: 475 SHIGHHLKNI---EHPERMTL--FRMV-FLDFR------FL-EQKIRHDSTAWNASGSIL 521
Query: 297 FSLIPFCFSEKH--PGAFQTELVLRSLK--------IKIIGKCEDGVQKLDIGLNF 342
+L F + + + E ++ ++ I K D ++ I L
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-08
Identities = 58/358 (16%), Positives = 117/358 (32%), Gaps = 78/358 (21%)
Query: 37 DTEAAA---KYNIINLPSLVYFRKQVPLLYDGDLFD-EEKILTWLTSQDVFEIKNEIEEV 92
D E +Y I L F + + D D ++ + L+ +++ I + V
Sbjct: 8 DFETGEHQYQYKDI----LSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 93 NR--RMLDKLLEENE-FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149
+ R+ LL + E V F E + ++ ++ + M +++ D Y
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 150 -----RKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL---------QWLITQKTEDRIE 195
K+ V++L + R ++ L + VL W+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQ---ALLE--LRPAKNVLIDGVLGSGKTWVALD------- 169
Query: 196 LITRVMLETMVEETQYLAVYFYKL-NCNICDQILEGLEK----VDDECDIYGIHMVKIQD 250
V L V+ +++ L NCN + +LE L+K +D H I+
Sbjct: 170 ----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 251 PQLAKRYSIKTFPALVYFRNGNPLI-------------FEGENKILKGT---YIGTYIST 294
+ + ++ + N L+ F KIL T + ++S
Sbjct: 226 RIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 295 KAFSLIPFCFSEKHPGAFQTELVLRSLKIKIIG-KCED------GVQKLDIGLNFGAM 345
+ I + H T ++SL +K + + +D + +
Sbjct: 284 ATTTHIS---LDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAES 336
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 40/304 (13%), Positives = 96/304 (31%), Gaps = 30/304 (9%)
Query: 8 CPECDDILEELEHI-----DGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFR--K 57
C + E + ++ + ++ ++ A +Y I P+L FR
Sbjct: 34 CRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGM 93
Query: 58 QVPLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHK 117
+ Y G + + ++ Q + I+E+ L+ ++ + ++E
Sbjct: 94 MMKREYRGQR-SVKALADYIRQQ----KSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDS 148
Query: 118 DSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF---PSIYRGD 174
D+ +V ER+ D A ++ + ++Y +Y G
Sbjct: 149 DNYRVFERVAN-----ILHDDCAFLSAFGDVSKPERYSG-DNIIYKPPGHSAPDMVYLGA 202
Query: 175 LSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-NCNICDQILEGLEK 233
++ + W I K + IT E + EE + F+ + + + +
Sbjct: 203 MTNFDVTYNW-IQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVAR 261
Query: 234 VD----DECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIG 289
+ K + P L + + P + + +F +L +
Sbjct: 262 QLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLK 321
Query: 290 TYIS 293
++
Sbjct: 322 QFVF 325
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 9e-08
Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 21/226 (9%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKI-----DGETDNMDITFVK 142
EI ++ +D++L + V FY + S + E+ + + + F +
Sbjct: 6 EITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 143 M---ADPRYARKWGVTKLPAVVYFRH--RFPSIYRGDLSEEEEVLQWLITQKTEDRIELI 197
+ A+++ ++K P + FR+ YRG + + ++ QK++ E+
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQR-SVKALADYIRQQKSDPIQEIR 124
Query: 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRY 257
+ T+ + + YF + + + + D+C ++K
Sbjct: 125 DLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFL------SAFGDVSKPE 178
Query: 258 SIKTFPALVY--FRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
+ + +++ G + +I K L+
Sbjct: 179 RYSGDNIIYKPPGHSAPDMVYLGA--MTNFDVTYNWIQDKCVPLVR 222
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 30/210 (14%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMD----ITFVK- 142
++ + + K +E + +F + E L++ I
Sbjct: 6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIY 65
Query: 143 --MADPRYARKWGVTKLPAVVYFRHRFPSI-YRGDLSEEE--------EVLQWLITQKTE 191
K+GV ++P +V + I Y G + E + Q +E
Sbjct: 66 SPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSE 125
Query: 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--- 248
+EL+ V + F +C C D I I
Sbjct: 126 KTLELLQVV-------DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDAS 176
Query: 249 QDPQLAKRYSIKTFPALVYFRNGNPLIFEG 278
++ LA+++ + P +V N F G
Sbjct: 177 ENQDLAEQFQVVGVPKIVI--NKGVAEFVG 204
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 14/232 (6%)
Query: 9 PECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRKQVPLLYDG 65
+ LE + + I V + + + A K SL + + +DG
Sbjct: 47 KQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDG 106
Query: 66 DLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER 125
+ F + ++ +L ++ ++ + ++ E++ + F++++ + K E
Sbjct: 107 E-FAADVLVEFLLDLIEDPVEIINSKLEVQAFER--IEDQIKLIGFFKSEESEYYKAFEE 163
Query: 126 LEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVLQ 183
E I F D A+K + K+ V ++ P EEE+++
Sbjct: 164 A----AEHFQPYIKFFATFDKGVAKKLSL-KMNEVDFYEPFMDEPIAIPDKPYTEEELVE 218
Query: 184 WLITQKTEDRIELITRVMLETMVEET-QYLAVYFYKLNCNICDQILEGLEKV 234
++ + L M ET ++ V F + + + LE L++V
Sbjct: 219 FVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQV 270
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/230 (10%), Positives = 82/230 (35%), Gaps = 18/230 (7%)
Query: 83 FEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDH------KDSVKVLERLEKIDGETDNM 136
++ K+ + + + ++L++ + + ++++E+ K LE + ++
Sbjct: 7 YDGKDRVVSLTEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHK 66
Query: 137 DITFVKM---ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDR 193
DI FV + + + A+K G + ++ + + G+ + ++++L+ +
Sbjct: 67 DIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEF-AADVLVEFLLDLIEDPV 125
Query: 194 IELITRVMLETMVEETQYLAV--YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDP 251
+ +++ ++ + + +F E E + D
Sbjct: 126 EIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFF-----ATFDK 180
Query: 252 QLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTKAFSLIP 301
+AK+ S+K + ++ +K + ++ +
Sbjct: 181 GVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLR 229
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 7e-07
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP 251
T L T +EE Q + ++ NC +CD +L + V + + + ++I
Sbjct: 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQ 61
Query: 252 QLAKRYSIKTFPALVYFRNG 271
++A RY++ T P ++ F NG
Sbjct: 62 EIAGRYAVFTGPTVLLFYNG 81
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 16/207 (7%)
Query: 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERL-EKIDG 131
+ + + + L+E +E + F++ DS K + E ID
Sbjct: 7 LEVLFQGPGSEFAT-TLPDGA--AAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAID- 62
Query: 132 ETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191
DI F ++ K+ + K V++ + +E +L ++ +
Sbjct: 63 -----DIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLP 117
Query: 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV----DDECDIYGIHMVK 247
IE + + E + + F + + D L + + I
Sbjct: 118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDH 177
Query: 248 IQDPQLAKRYSIKT--FPALVYFRNGN 272
+ ++ + + +K PA+
Sbjct: 178 TDNQRILEFFGLKKEECPAVRLITLEE 204
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-06
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 14/204 (6%)
Query: 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM---A 144
+ + + K++ + + VF + + ++ + ++++ TD + V
Sbjct: 8 DKKVIKEEFFSKMVNPVKLI-VFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE 66
Query: 145 DPRYARKWGVTKLPAVVYFRHR--FPSIYRGDLSEEE-EVLQWLITQKTEDRIELITRVM 201
A+++ + + PA + F Y G + E I + + L+
Sbjct: 67 GKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETK 126
Query: 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG---IHMVKI---QDPQLAK 255
+ + F C C + K E G I + + P+ A
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWAD 186
Query: 256 RYSIKTFPALVYFRNGNPLI-FEG 278
+Y++ P +V NG + FEG
Sbjct: 187 QYNVMAVPKIVIQVNGEDRVEFEG 210
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 6e-06
Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 23/237 (9%)
Query: 8 CPECDDILEELEHIDGDADQYGIDMVKI---SDTEAAAKYNIINLPSLVYFRK-QVPLLY 63
C + E E + + + K+ ++T KY + P+L FR + Y
Sbjct: 33 CGHAKRLAPEYEAA-ATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAY 91
Query: 64 DGDLFDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL 123
DG + I++ L Q K + + + V F++ ++
Sbjct: 92 DGP-RTADGIVSHLKKQAGPASV---PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF 147
Query: 124 ERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPS-------IYRGDLS 176
+ + F ++ +++ + Y
Sbjct: 148 LKA----ASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKM 203
Query: 177 EEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEK 233
++ +++ + + L + +Y ++ +
Sbjct: 204 TSGKIKKFIQENIFGICPHMTEDNKDLIQ---GKDLLIAYYDVDYEKNAKGSNYWRN 257
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 7e-04
Identities = 25/201 (12%), Positives = 59/201 (29%), Gaps = 15/201 (7%)
Query: 87 NEIEEVNRRMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143
+++ E+ + + + + V F+ + ++ E + K+
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKV 59
Query: 144 ---ADPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLITQKTEDRIELITR 199
A+ K+GV+ P + FR Y G + ++ L Q + L T
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGP-RTADGIVSHLKKQAGPASVPLRTE 118
Query: 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGL-EKVDDECDIYGIHMVKIQDPQLAKRYS 258
+ + + V F+ + + + D L Y
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFA-----HTNVESLVNEYD 173
Query: 259 IKTFPALVYFRNGNPLIFEGE 279
+++ + FE +
Sbjct: 174 DNGEGIILFRPSHLTNKFEDK 194
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 1e-05
Identities = 21/212 (9%), Positives = 58/212 (27%), Gaps = 12/212 (5%)
Query: 16 EELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75
+++ + +D + +++ ++NI P++ +F+ L +
Sbjct: 57 NDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQ 116
Query: 76 WLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVL----------ER 125
L + + +++ + LE + + + T +K L
Sbjct: 117 TLRMRLIDALESHRD--TWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGRE 174
Query: 126 LEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185
+ + + + V + K+GVT P+ L E
Sbjct: 175 VTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSY 234
Query: 186 ITQKTEDRIELITRVMLETMVEETQYLAVYFY 217
+ + ++ F
Sbjct: 235 LRGLPGLTRDAPPTTATPVTADKIAPTVWKFA 266
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV-YF 268
+YLA+ F + ++ L + + V + + +++ + FP+ F
Sbjct: 158 EYLALIFEXGGSYLAREVALDLSQHKGV----AVRRVLNTEANVVRKFGVTDFPSCYLLF 213
Query: 269 RNGNP 273
RNG+
Sbjct: 214 RNGSV 218
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 188 QKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD--IYGIHM 245
+E+ T V + +++ + + + C C + L V E IY I+
Sbjct: 8 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 67
Query: 246 VKIQDPQ----LAKRYSIKTFPALVYFRNG 271
+ RY I T P V+ +G
Sbjct: 68 EEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 9/95 (9%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 185 LITQKTEDRIELITRVMLETMVEETQY--LAVYFYKLNCNICDQILEGLEKVDDECDIYG 242
L + + + ++ ++ + + + ++ E +
Sbjct: 10 LWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD 69
Query: 243 IHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274
+ Q + R++++ FPA + F +G
Sbjct: 70 WQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
++ Y+ + +C + + L + + + VK + Y P + ++NG
Sbjct: 35 IHLYRSSVPMCLVVNQHLSVLARK---FPETKFVKAIVNSCIEHYHDNCLPTIFVYKNGQ 91
Query: 273 P 273
Sbjct: 92 I 92
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 6e-04
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 214 VYFYKLNCNICDQILEGLEKVDDECDIYG-IHMVKIQDPQLAKRYSIKTFPALVYFRNGN 272
++ Y+ + +C + + L + + + VK + Y P + ++NG
Sbjct: 28 IHLYRSSIPMCLLVNQHLSLLARK---FPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQ 84
Query: 273 P 273
Sbjct: 85 I 85
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 100.0 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 100.0 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 100.0 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 100.0 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 100.0 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 100.0 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 100.0 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 100.0 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 100.0 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 100.0 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.97 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.97 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.96 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.96 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.96 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.96 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.96 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.95 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.95 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.94 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.93 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.92 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.92 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.9 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.87 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 99.83 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.81 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 99.81 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.79 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.77 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.75 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.74 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.72 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.71 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.71 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.71 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.7 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.7 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 99.7 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.69 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.69 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.69 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.69 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.69 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.68 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.68 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.67 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.67 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.67 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.67 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.67 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.67 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.66 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.66 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.66 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.66 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.66 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.66 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.66 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.66 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.66 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.66 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.66 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.65 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.65 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.65 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.65 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.65 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.64 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.64 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.64 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.64 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.64 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.64 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.64 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.64 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.63 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.63 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 99.63 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.63 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.63 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.63 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.62 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.62 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.62 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.62 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.62 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.62 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.62 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.62 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.62 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.61 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.61 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.61 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.61 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.61 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.61 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.61 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.61 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.61 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.61 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.6 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.6 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.6 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.6 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.6 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.6 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 99.59 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.59 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.59 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.59 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.59 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.59 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.59 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.59 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.59 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.59 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.58 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.58 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.58 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.58 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.58 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.58 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.58 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.58 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.57 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.57 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.57 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.57 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.57 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.57 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.57 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.57 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.57 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.56 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.56 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.56 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.56 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.56 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.56 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.56 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.56 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.55 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.55 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.55 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.55 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.55 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.55 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.54 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.54 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.54 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.54 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.54 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.54 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.54 | |
| 3ec3_A | 250 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.54 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.54 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.53 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.53 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.53 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.53 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.53 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.53 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.52 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.51 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.51 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.51 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.51 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.5 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.5 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.5 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.5 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.5 | |
| 2h8l_A | 252 | Protein disulfide-isomerase A3; thioredoxin-like f | 99.49 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.49 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.48 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.47 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.47 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.47 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.47 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.47 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.46 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 99.46 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 99.19 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.45 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.45 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.45 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.44 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.43 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 99.43 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.43 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.43 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.42 | |
| 3ec3_A | 250 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.42 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.42 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.42 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.42 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.41 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.41 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.4 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.4 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.4 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.4 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.4 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.38 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.37 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.36 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 99.05 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.36 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.35 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.34 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.33 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.33 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.33 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.31 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.31 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.29 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.27 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.27 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.26 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.25 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.22 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.86 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.21 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.21 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.2 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.8 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.17 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 99.16 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.16 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.15 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.14 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.14 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.13 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.12 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 99.12 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.11 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.11 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.1 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 99.1 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.09 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.08 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.08 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 99.07 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.05 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.05 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.04 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.03 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.02 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.02 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.02 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 99.01 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.01 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.0 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.0 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.0 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 98.99 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 98.98 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 98.98 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 98.97 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 98.97 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 98.96 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 98.96 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 98.96 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 98.95 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 98.94 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 98.93 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 98.91 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 98.91 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.91 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 98.9 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 98.89 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 98.89 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 98.89 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 98.89 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 98.89 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 98.88 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 98.88 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 98.88 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 98.88 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 98.88 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 98.87 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 98.87 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 98.87 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 98.87 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 98.86 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 98.86 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 98.86 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 98.86 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 98.85 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 98.85 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 98.85 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 98.85 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.84 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 98.84 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 98.84 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 98.83 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 98.82 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 98.81 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 98.81 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 98.8 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.79 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 98.78 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 98.78 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 98.78 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 98.78 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 98.76 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 98.76 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 98.76 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.74 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 98.71 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 98.69 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 98.68 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 98.68 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 98.68 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 98.67 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 98.12 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 98.66 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 98.11 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 98.64 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.64 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 98.63 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 98.62 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.62 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 98.62 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 98.61 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.57 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.55 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 98.54 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.54 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 98.51 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 98.49 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.48 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.48 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 98.47 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.44 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 98.44 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 98.43 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 97.81 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 98.42 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.41 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 98.41 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 97.76 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.4 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.36 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.35 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 98.33 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 98.32 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 98.32 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 98.31 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 98.31 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 98.3 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 98.3 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 98.25 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 98.25 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 98.25 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 98.23 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 98.22 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 98.22 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 98.2 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 98.2 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 98.19 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.17 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.17 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 98.16 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 98.16 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 98.14 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.13 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 98.13 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.09 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 98.09 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 98.07 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 98.07 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 98.07 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.05 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 98.05 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.04 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 98.04 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 98.03 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 98.03 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 98.02 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 98.02 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 98.01 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 98.0 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.0 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.0 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 97.95 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 97.95 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 97.95 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 97.95 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 97.93 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 97.93 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.91 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 97.91 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 97.89 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 97.88 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.86 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.86 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.85 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 97.83 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 97.83 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.82 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 97.81 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 97.78 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 97.78 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.78 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 97.78 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.77 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 97.77 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.77 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 97.76 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.76 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.74 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.74 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 97.74 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 97.74 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.71 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 97.7 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 97.68 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 97.67 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 97.67 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 97.66 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 97.65 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.61 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 97.6 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 97.59 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 97.57 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.57 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 97.56 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.54 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 97.53 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 97.51 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 97.51 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 97.51 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.5 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 97.46 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.46 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 97.45 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 97.45 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 97.45 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 97.44 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 97.43 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 97.41 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 97.4 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 97.39 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 97.38 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 97.38 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 97.37 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 97.37 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.34 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 97.34 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 97.33 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 97.33 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.33 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 97.3 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 97.28 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 97.28 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 97.23 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.19 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 97.19 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 97.19 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 97.17 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 97.16 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 97.15 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 97.14 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 97.14 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 97.13 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.12 | |
| 3bj5_A | 147 | Protein disulfide-isomerase; thioredoxin fold, cha | 97.12 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 97.12 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 97.1 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 97.09 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 97.08 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 97.03 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 97.02 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 97.02 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.99 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 96.98 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 96.97 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 96.96 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 96.95 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 96.92 | |
| 3l4n_A | 127 | Monothiol glutaredoxin-6; C-terminal domain of GRX | 96.91 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 96.88 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 96.87 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 96.86 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 96.86 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 96.85 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 96.82 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 96.81 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 96.81 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 96.81 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 96.76 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 96.75 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 96.74 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 96.74 |
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=357.31 Aligned_cols=268 Identities=14% Similarity=0.203 Sum_probs=234.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.|||+||++|+++.|.|+++|+.++. +|.++.+| +.++|.+|+|+++||+++|++|....|.|.++. ++|.+|+
T Consensus 460 v~F~a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~-~~l~~fi 537 (780)
T 3apo_A 460 VDFFAPWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSA-EQILEFI 537 (780)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEECSCSCH-HHHHHHH
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcCCceeeecCcccH-HHHHHHH
Confidence 589999999999999999999999843 47777664 578999999999999999999888889998776 5999999
Q ss_pred hccCCccccCceeecCHHHHHHHHhc---CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHh
Q psy160 78 TSQDVFEIKNEIEEVNRRMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARK 151 (346)
Q Consensus 78 ~~~~~p~~~~~v~~l~~~~~~~~~~~---~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~ 151 (346)
.+...| .|..++.++|++++.. +..|+|.||+|||+||+++.|.|+++|+.+++ ++.|+.+| +..+|++
T Consensus 538 ~~~~~~----~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~-~v~~~~vd~~~~~~l~~~ 612 (780)
T 3apo_A 538 EDLRNP----SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG-LINVGSVDCGQYHSFCTQ 612 (780)
T ss_dssp HHHHSC----SEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHH
T ss_pred Hhhccc----ceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-CeEEEEEECcchHHHHHH
Confidence 998888 8999999999999875 46799999999999999999999999999976 48888876 6789999
Q ss_pred hCCCCcceEEEEecCC-----cceecC-CcchhHHHHHHHhhccccCcEEEccHHHHHH-HHhccceEEEEEEcCCChhh
Q psy160 152 WGVTKLPAVVYFRHRF-----PSIYRG-DLSEEEEVLQWLITQKTEDRIELITRVMLET-MVEETQYLAVYFYKLNCNIC 224 (346)
Q Consensus 152 ~~i~~~Ptl~~~~~g~-----~~~y~g-~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c 224 (346)
++|+++||+++|+.|. +..|+| .++ .++|.+|+.+...+ .+..++.+++++ +++.+++++|.||++||++|
T Consensus 613 ~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~-~~~l~~fi~~~~~~-~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C 690 (780)
T 3apo_A 613 ENVQRYPEIRFYPQKSSKAYQYHSYNGWNRD-AYSLRSWGLGFLPQ-ASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPS 690 (780)
T ss_dssp TTCCSSSEEEEECCCSSSCCSCEECCCSCCS-HHHHHHHHHTTSCC-CSEEECHHHHHHHTTTCSSCEEEEEECTTCHHH
T ss_pred cCCCCCCeEEEEcCCCcCccchhhcCCCCCC-HHHHHHHHhhhccc-ccccCCHHHHHHHHhcCCCeEEEEEECCCCHHH
Confidence 9999999999998764 466999 666 55999999998755 566889999987 56778899999999999999
Q ss_pred HHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-Eeec
Q psy160 225 DQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL-IFEG 278 (346)
Q Consensus 225 ~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~-~y~g 278 (346)
+.+.|.++++++++++ ++.++.+ .++.++++|+|.++||+++|++|+.+ .+.|
T Consensus 691 ~~~~p~~~~la~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 747 (780)
T 3apo_A 691 QNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWE 747 (780)
T ss_dssp HHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCccccccC
Confidence 9999999999999986 7888888 57889999999999999999888643 3555
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=284.34 Aligned_cols=278 Identities=15% Similarity=0.283 Sum_probs=230.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeC--CceeeecCCCCCHHHHHHHHhc
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--QVPLLYDGDLFDEEKILTWLTS 79 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~--~~~~~y~G~~~~~~~i~~~i~~ 79 (346)
-|+.+.+..+ ...|.++|+.+ .++.|+.+.+.++|++|++.. |++++|++ ..+..|.|.++. ++|.+|+..
T Consensus 41 gff~~~~~~~---~~~f~~~A~~~--~~~~F~~t~~~~v~~~~~v~~-~~i~lfk~f~~~~~~~~g~~~~-~~i~~fi~~ 113 (361)
T 3uem_A 41 GFFKDVESDS---AKQFLQAAEAI--DDIPFGITSNSDVFSKYQLDK-DGVVLFKKFDEGRNNFEGEVTK-ENLLDFIKH 113 (361)
T ss_dssp EECSCTTSHH---HHHHHHHHHHC--SSSCEEEECCHHHHHHTTCSS-SEEEEEESSTTSEEECCSCCCH-HHHHHHHHH
T ss_pred EEEcCCCchH---HHHHHHHHhcC--CCceEEEECcHHHHHHhCCCC-CeEEEEEecCCCccccCCcCCH-HHHHHHHHH
Confidence 4666555433 45788999987 368999999999999999998 99999997 678899998765 699999999
Q ss_pred cCCccccCceeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhC
Q psy160 80 QDVFEIKNEIEEVNRRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWG 153 (346)
Q Consensus 80 ~~~p~~~~~v~~l~~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~ 153 (346)
+..| .+.+++.+++.+++.+. +.++++||++||++|+++.|.|+++|+.+++. +.|+.+| ++++|+.||
T Consensus 114 ~~~p----~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~~~~~~~~~fg 188 (361)
T 3uem_A 114 NQLP----LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHTDNQRILEFFG 188 (361)
T ss_dssp HSSC----SEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSGGGHHHHHHTT
T ss_pred cCCC----cceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChHHHHHHHHHcC
Confidence 9999 99999999999998765 57799999999999999999999999999764 7888765 567999999
Q ss_pred CCC--cceEEEEecCC-cceec---CCcchhHHHHHHHhhccc-----------------cCcEEEccHHHHHHHH-hcc
Q psy160 154 VTK--LPAVVYFRHRF-PSIYR---GDLSEEEEVLQWLITQKT-----------------EDRIELITRVMLETMV-EET 209 (346)
Q Consensus 154 i~~--~Ptl~~~~~g~-~~~y~---g~~~~~~~i~~fi~~~~~-----------------~~~v~~l~~~~~~~~~-~~~ 209 (346)
|++ +|+++++..|. ...|. |.++ .++|.+|+.+... ...+..++.+++++++ +.+
T Consensus 189 i~~~~~P~~~~~~~~~~~~ky~~~~~~~~-~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~ 267 (361)
T 3uem_A 189 LKKEECPAVRLITLEEEMTKYKPESEELT-AERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEK 267 (361)
T ss_dssp CCTTTCSEEEEEECC--CCEECCSSCCCC-HHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTT
T ss_pred CCccCCccEEEEEcCCcccccCCCccccC-HHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCC
Confidence 998 99999999754 55675 6677 4599999987431 1347789999999975 578
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE-cChhhhhhCCCccccEEEEEeCC---eEEEeecCccccc
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI-QDPQLAKRYSIKTFPALVYFRNG---NPLIFEGENKILK 284 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i-~~~~~~~~~~i~~~Pti~~~~~g---~~~~y~g~~~~~~ 284 (346)
++++|.||||||++|+.+.|.|+++++.+++. ++.++.+ .....+++|+|+++||+++|++| .+..|.|.++.+.
T Consensus 268 k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~ 347 (361)
T 3uem_A 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDG 347 (361)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBCSSCCCCSSSEEEEECSSSSCCCEECCSCSSHHH
T ss_pred CcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccchhhcCCcccCeEEEEECCCCcceeEecCCCCHHH
Confidence 89999999999999999999999999999753 4899998 23333789999999999999655 3688999886433
Q ss_pred cchhhhhhhcc
Q psy160 285 GTYIGTYISTK 295 (346)
Q Consensus 285 ~~~~~~~i~~~ 295 (346)
+..|++..
T Consensus 348 ---l~~~l~~~ 355 (361)
T 3uem_A 348 ---FKKFLESG 355 (361)
T ss_dssp ---HHHHHTTT
T ss_pred ---HHHHHHhc
Confidence 66666654
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=290.66 Aligned_cols=280 Identities=14% Similarity=0.312 Sum_probs=227.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc-eeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV-PLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~-~~~y~G~~~~~~~i~~~ 76 (346)
|+||||||+||+++.|+|+++++.++.. +.++.+| ++++|++|+|+++||+++|++|. +..|.|.+.. ++|.+|
T Consensus 26 v~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~G~~~~-~~l~~~ 103 (481)
T 3f8u_A 26 VEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTA-DGIVSH 103 (481)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTTCHHHHHHTTCCEESEEEEEETTEEEEECCSCSSH-HHHHHH
T ss_pred EEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCceeeeecCccCH-HHHHHH
Confidence 6899999999999999999999998543 6666664 78999999999999999999994 6689998776 699999
Q ss_pred HhccCCccccCceeec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCC
Q psy160 77 LTSQDVFEIKNEIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVT 155 (346)
Q Consensus 77 i~~~~~p~~~~~v~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~ 155 (346)
+.+...| .+.++ +.+++++++..++.++|.|+.++|..+ .+.|.++|..+++ .+.|+.+....+++++++.
T Consensus 104 ~~~~~~~----~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~---~~~f~~~a~~~~~-~~~F~~~~~~~~~~~~~v~ 175 (481)
T 3f8u_A 104 LKKQAGP----ASVPLRTEEEFKKFISDKDASIVGFFDDSFSEA---HSEFLKAASNLRD-NYRFAHTNVESLVNEYDDN 175 (481)
T ss_dssp HHHHTSC----SEEEECSHHHHHHHTTSSSCEEEEEESCTTCHH---HHHHHHHHHHHTT-TSCEEEECCHHHHHHHCSS
T ss_pred HHhhccc----CceecCCHHHHHHHHhcCCcEEEEEECCCccch---HHHHHHHHHHhcc-CceEEEECCHHHHHHhCCC
Confidence 9999988 78888 678999999999999999999887654 5788899988854 3889999999999999999
Q ss_pred CcceEEEEe--------cCCcceec-CCcchhHHHHHHHhhcc-------------------------------------
Q psy160 156 KLPAVVYFR--------HRFPSIYR-GDLSEEEEVLQWLITQK------------------------------------- 189 (346)
Q Consensus 156 ~~Ptl~~~~--------~g~~~~y~-g~~~~~~~i~~fi~~~~------------------------------------- 189 (346)
..| +++|+ ++.+..|+ |..+ .++|.+|+..+.
T Consensus 176 ~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~-~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~~~~v~~~~~~~~~~~~~~~ 253 (481)
T 3f8u_A 176 GEG-IILFRPSHLTNKFEDKTVAYTEQKMT-SGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSN 253 (481)
T ss_dssp SEE-EEEECCGGGCBTTBCSEEECCCSSCC-HHHHHHHHHHHTTTTSCEECTTTHHHHTTSSEEEEEECCCTTTCHHHHH
T ss_pred CCc-EEEEecccccCccCCcccccCCCCCC-HHHHHHHHHHhCCCCccccChhHHHHhcCCCceEEEEecccccchhhHH
Confidence 866 77777 23466787 5555 447877776510
Q ss_pred --------------------------------------------------------------------------------
Q psy160 190 -------------------------------------------------------------------------------- 189 (346)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T Consensus 254 ~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~~~~~ky~~~~~~t~e~~~l~~f~~~~~ 333 (481)
T 3f8u_A 254 YWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYF 333 (481)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEECSSSCEEECCSCCCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEcCCCcccCCCcccCccHHHHHHHHHHHh
Confidence
Q ss_pred ----------------ccCcEEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE--c
Q psy160 190 ----------------TEDRIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI--Q 249 (346)
Q Consensus 190 ----------------~~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i--~ 249 (346)
....+..++.++|++++.+ +++++|.|||+||++|+.+.|.|+++++.+.+. ++.++.+ .
T Consensus 334 ~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~ 413 (481)
T 3f8u_A 334 DGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413 (481)
T ss_dssp HTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETT
T ss_pred cCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECC
Confidence 0124556777888886544 789999999999999999999999999999753 5889988 3
Q ss_pred ChhhhhhCCCccccEEEEEeCCe---EEEeecCccccccchhhhhhhcc
Q psy160 250 DPQLAKRYSIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 250 ~~~~~~~~~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
..+++++|+|.++||+++|++|. +..|.|.++.+. +..|++..
T Consensus 414 ~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~---l~~~l~~~ 459 (481)
T 3f8u_A 414 ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSD---FISYLQRE 459 (481)
T ss_dssp SSCCCTTCCCCSSSEEEEECTTCTTSCEECCSCCSHHH---HHHHHHHH
T ss_pred chhhHhhCCCcccCEEEEEeCCCeEeeeEeCCCCCHHH---HHHHHHHh
Confidence 44789999999999999998775 688999986433 55555554
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=311.53 Aligned_cols=290 Identities=12% Similarity=0.163 Sum_probs=242.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc---eeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV---PLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~---~~~y~G~~~~~~~i~ 74 (346)
|.|+++.|. | .+.++++++|+.++..++.|+.+| +.++|+++++.. |++++|++.. +..|.|.... ++|.
T Consensus 356 v~F~~~~~~-~-~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~-p~i~l~~~~~~e~~~~~~g~~~~-~~i~ 431 (780)
T 3apo_A 356 VFFHFGKNE-N-ANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKIL-YDIL 431 (780)
T ss_dssp EEEECC-------CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCS-CEEEEEESSTTSSEEECCSCCCH-HHHH
T ss_pred EEEecCCcc-c-cchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccC-ChhhhccCCCcceeeecccHhhH-HHHH
Confidence 467776653 2 345789999998866678887764 678999999987 9999999854 6789998655 6999
Q ss_pred HHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHh
Q psy160 75 TWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARK 151 (346)
Q Consensus 75 ~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~ 151 (346)
+|+.....| .|.+++.++|+++ .+++++|.||++||++|+++.|.|+++|+.+++ ++.|+.+| ++.+|++
T Consensus 432 ~f~~~~~~~----~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~~~~~ 504 (780)
T 3apo_A 432 AFAKESVNS----HVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNM 504 (780)
T ss_dssp HHHHHHHTS----CEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred HHhhhccCC----CCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHH
Confidence 999998888 8999999999887 778999999999999999999999999999864 47888775 6789999
Q ss_pred hCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhc---cceEEEEEEcCCChhhHHHH
Q psy160 152 WGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEE---TQYLAVYFYKLNCNICDQIL 228 (346)
Q Consensus 152 ~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~ 228 (346)
|||+++||++++++|+...|.|.++.+ +|.+|+.+...+ .|..++.++|++++.. +..++|.||+|||++|+.+.
T Consensus 505 ~~v~~~Pt~~~~~~g~~~~~~g~~~~~-~l~~fi~~~~~~-~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~ 582 (780)
T 3apo_A 505 YNIQAYPTTVVFNQSSIHEYEGHHSAE-QILEFIEDLRNP-SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLM 582 (780)
T ss_dssp TTCCSSSEEEEEETTEEEEECSCSCHH-HHHHHHHHHHSC-SEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHH
T ss_pred cCCCcCCeEEEEcCCceeeecCcccHH-HHHHHHHhhccc-ceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhh
Confidence 999999999999888888899998854 999999998876 6778999999998654 56799999999999999999
Q ss_pred HHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe-----EEEeec-CccccccchhhhhhhccCCCC
Q psy160 229 EGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN-----PLIFEG-ENKILKGTYIGTYISTKAFSL 299 (346)
Q Consensus 229 ~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~-----~~~y~g-~~~~~~~~~~~~~i~~~~~~~ 299 (346)
|.|+++|+.+++ .+.|+.+ .+..+|++++|+++|++++|+.|. +..|.| .++.+. +..|+.....+.
T Consensus 583 p~~~~lA~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~---l~~fi~~~~~~~ 658 (780)
T 3apo_A 583 PEWKRMARTLTG-LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYS---LRSWGLGFLPQA 658 (780)
T ss_dssp HHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHH---HHHHHHTTSCCC
T ss_pred HHHHHHHHHhhC-CeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHH---HHHHHhhhcccc
Confidence 999999999987 7999998 567889999999999999998763 578999 665333 778888776666
Q ss_pred CCcccCCC
Q psy160 300 IPFCFSEK 307 (346)
Q Consensus 300 ~~~~~~~~ 307 (346)
+.+++.++
T Consensus 659 v~~l~~~~ 666 (780)
T 3apo_A 659 SIDLTPQT 666 (780)
T ss_dssp SEEECHHH
T ss_pred cccCCHHH
Confidence 66666554
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=285.23 Aligned_cols=283 Identities=14% Similarity=0.286 Sum_probs=213.4
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc---eeeecCCCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV---PLLYDGDLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~---~~~y~G~~~~~~~i~ 74 (346)
|+||||||+||+++.|.|+++++.+...++.++.+| +.++|.+|+|+++||+++|++|. +..|.|.+.. ++|.
T Consensus 36 v~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~-~~l~ 114 (504)
T 2b5e_A 36 AEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTA-EAIV 114 (504)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCCSH-HHHH
T ss_pred EEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccccceeecCCCCH-HHHH
Confidence 689999999999999999999999965578888775 68999999999999999999987 7789998776 5999
Q ss_pred HHHhccCCccccCceeecCH------------------------------------------------------------
Q psy160 75 TWLTSQDVFEIKNEIEEVNR------------------------------------------------------------ 94 (346)
Q Consensus 75 ~~i~~~~~p~~~~~v~~l~~------------------------------------------------------------ 94 (346)
+|+.+...| .+..++.
T Consensus 115 ~~l~~~~~~----~v~~i~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~i~l~~ 190 (504)
T 2b5e_A 115 QFMIKQSQP----AVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPS 190 (504)
T ss_dssp HHHHHHTSC----SEEECSCHHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECTTSCCEEEEEETT
T ss_pred HHHHHhcCC----cceeHHHHHHHHhcCCCceEEEEEeCCCCchHHHHHHHHHHHhhcCcEEEEEHHHHHhcCCeEEecC
Confidence 999887765 4444433
Q ss_pred --------------------------------------HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC
Q psy160 95 --------------------------------------RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM 136 (346)
Q Consensus 95 --------------------------------------~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~ 136 (346)
++++++...+.+++++|+.+.... ..+.+.++++|+.+++
T Consensus 191 ~~~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~a~~~~~- 268 (504)
T 2b5e_A 191 AMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEEL-EEYKPLFTELAKKNRG- 268 (504)
T ss_dssp EEEEEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHHHH-HHHHHHHHHHHHHTTT-
T ss_pred CCCcccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcccH-HHHHHHHHHHHHhcCC-
Confidence 333333333334444444432111 5677888889988865
Q ss_pred CcEEEEeC---ChhhHHhhCC-CCcceEEEEecCCccee--c--CC-----------cchhHHHHHHHhhccc-------
Q psy160 137 DITFVKMA---DPRYARKWGV-TKLPAVVYFRHRFPSIY--R--GD-----------LSEEEEVLQWLITQKT------- 190 (346)
Q Consensus 137 ~i~~~~~~---~~~l~~~~~i-~~~Ptl~~~~~g~~~~y--~--g~-----------~~~~~~i~~fi~~~~~------- 190 (346)
++.|+.+| .+.+++.||+ ..+|++++++......| . +. .+ .+.+.+|+.+...
T Consensus 269 ~i~F~~id~~~~~~~~~~~gl~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~-~~~l~~f~~~~~~g~~~p~~ 347 (504)
T 2b5e_A 269 LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLE-SKAIESLVKDFLKGDASPIV 347 (504)
T ss_dssp TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCC-HHHHHHHHHHHHHTCCCCCC
T ss_pred eeEEEEEehhhhHHHHHHcCCcccCCEEEEEeCCcCcccCCCCCccchhhccccccccC-HHHHHHHHHHHHcCCCChhh
Confidence 38888877 4568999999 45899999986443334 3 33 44 4589999876321
Q ss_pred ---------cCcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcC--cCceEEEEE--cChhhhhh
Q psy160 191 ---------EDRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECD--IYGIHMVKI--QDPQLAKR 256 (346)
Q Consensus 191 ---------~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~--~~~i~~~~i--~~~~~~~~ 256 (346)
.+.+..++.++|++.+ +.+++++|.|||+||++|+.+.|.|+++++.+. ..++.++.+ ......+
T Consensus 348 ~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~- 426 (504)
T 2b5e_A 348 KSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG- 426 (504)
T ss_dssp CCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSS-
T ss_pred hcCCCCccccccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcccccc-
Confidence 1467889999999975 568899999999999999999999999999886 236888888 2223444
Q ss_pred CCCccccEEEEEeCCe---EEEeecCccccccchhhhhhhcc
Q psy160 257 YSIKTFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 257 ~~i~~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
|+|+++||+++|++|+ ...|.|.++.+. +..|++..
T Consensus 427 ~~v~~~Pt~~~~~~G~~~~~~~~~G~~~~~~---l~~~i~~~ 465 (504)
T 2b5e_A 427 VVIEGYPTIVLYPGGKKSESVVYQGSRSLDS---LFDFIKEN 465 (504)
T ss_dssp CCCSSSSEEEEECCTTSCCCCBCCSCCCHHH---HHHHHHHH
T ss_pred CCceecCeEEEEeCCceecceEecCCCCHHH---HHHHHHhc
Confidence 9999999999999885 677999886433 55566554
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=266.22 Aligned_cols=257 Identities=16% Similarity=0.214 Sum_probs=219.9
Q ss_pred CeecCCCChhhHHHHHH-------HHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCH
Q psy160 1 MYINDENCPECDDILEE-------LEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDE 70 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~-------~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~ 70 (346)
|+||||||+ |++++|+ |+++++.++..+|.++++| ++++|++|+|+++||+++|++|.+..|.|.++.
T Consensus 33 V~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~G~~~~- 110 (350)
T 1sji_A 33 LYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAA- 110 (350)
T ss_dssp EEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEEEEECSCCCH-
T ss_pred EEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEEEECCcEEEecCCCCH-
Confidence 689999999 9989888 8999999865578887765 689999999999999999999998899998776
Q ss_pred HHHHHHHhccCCccccCceeecC-HHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhh
Q psy160 71 EKILTWLTSQDVFEIKNEIEEVN-RRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRY 148 (346)
Q Consensus 71 ~~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l 148 (346)
++|.+|+.+...| .+.+++ .+++++++. +++.++|.|+++||. ...+.|.++|..+++ ++.|+.+.++++
T Consensus 111 ~~l~~~i~~~~~~----~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~-~~~f~~~~~~~~ 182 (350)
T 1sji_A 111 DVLVEFLLDLIED----PVEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQP-YIKFFATFDKGV 182 (350)
T ss_dssp HHHHHHHHTTSSC----SEEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTT-TSEEEEECCHHH
T ss_pred HHHHHHHHHhcCC----cceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhcc-CcEEEEECCHHH
Confidence 5999999999988 888885 789999998 778899999999865 456899999998854 488999999999
Q ss_pred HHhhCCCCcceEEEEec--CCcceecCC-cchhHHHHHHHhhccccCcEEEccHHHHHHHHhcc--ceEEEEEEcCCChh
Q psy160 149 ARKWGVTKLPAVVYFRH--RFPSIYRGD-LSEEEEVLQWLITQKTEDRIELITRVMLETMVEET--QYLAVYFYKLNCNI 223 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~--g~~~~y~g~-~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~c~~ 223 (346)
|++++|+ +|++++|++ +.+..|+|. ++ .++|.+|+.++..| .+..++.+++.++..+. +..++.|+.+||++
T Consensus 183 ~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~-~~~l~~fi~~~~~p-~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~ 259 (350)
T 1sji_A 183 AKKLSLK-MNEVDFYEPFMDEPIAIPDKPYT-EEELVEFVKEHQRP-TLRRLRPEDMFETWEDDLNGIHIVAFAERSDPD 259 (350)
T ss_dssp HHHHTCC-TTCEEEECTTCSSCEECSSSSCC-HHHHHHHHHHHCCC-SEEECCTTTHHHHHHSCSSSEEEEEECCTTSHH
T ss_pred HHHcCCC-CCcEEEEeCCCCCceecCCCCCC-HHHHHHHHHHcCcc-chhhcChhhHHHHhcCCCCCcEEEEEEcCCCcc
Confidence 9999999 999999987 347789997 65 55999999999877 77899999999887652 44556699999999
Q ss_pred hHHHHHHHHHHHhhcCc-CceEEEEE---cChhhh----hhCCCc-cccEEEEEeC
Q psy160 224 CDQILEGLEKVDDECDI-YGIHMVKI---QDPQLA----KRYSIK-TFPALVYFRN 270 (346)
Q Consensus 224 c~~~~~~~~~la~~~~~-~~i~~~~i---~~~~~~----~~~~i~-~~Pti~~~~~ 270 (346)
|..+.+.++++|+++++ .++.|+.+ ..+.++ +.||+. ++|++++++.
T Consensus 260 ~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~P~~~i~~~ 315 (350)
T 1sji_A 260 GYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNV 315 (350)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTSCEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccCCcEEEEec
Confidence 99999999999999973 36888888 445566 789998 5899999975
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=265.21 Aligned_cols=259 Identities=16% Similarity=0.217 Sum_probs=218.1
Q ss_pred CeecCCCChhh---HHHH---HHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHH
Q psy160 1 MYINDENCPEC---DDIL---EELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEE 71 (346)
Q Consensus 1 v~Fy~~~C~~c---~~~~---~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~ 71 (346)
|+||||||+|| +++. |.++++++.++..+|.++++| ++++|++|+|++|||+++|++|.+..|.|.+.. +
T Consensus 35 V~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~~~y~G~~~~-~ 113 (367)
T 3us3_A 35 LLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSA-D 113 (367)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEEEECCSCCSH-H
T ss_pred EEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEEECCcEEEeCCCCCH-H
Confidence 68999999996 3333 689999999866678888775 689999999999999999999999999998876 5
Q ss_pred HHHHHHhccCCccccCceeecC-HHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhH
Q psy160 72 KILTWLTSQDVFEIKNEIEEVN-RRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149 (346)
Q Consensus 72 ~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~ 149 (346)
+|++|+.+...| .+..++ .+++++++. +++.++|.|+++||+ ...+.|.++|..+++ .+.|+.+.+..++
T Consensus 114 ~i~~~i~~~~~~----~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~-~~~F~~~~~~~~~ 185 (367)
T 3us3_A 114 TLVEFLLDVLED----PVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFATFDSKVA 185 (367)
T ss_dssp HHHHHHHHHHSC----SEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTT-TSCEEEECCHHHH
T ss_pred HHHHHHHHhcCC----CcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcC-CcEEEEECCHHHH
Confidence 999999999888 888885 689999998 678899999999876 567789999998865 3889999999999
Q ss_pred HhhCCCCcceEEEEec--CCcceecCC-cchhHHHHHHHhhccccCcEEEccHHHHHHHHhc--cceEEEEEEcCCChhh
Q psy160 150 RKWGVTKLPAVVYFRH--RFPSIYRGD-LSEEEEVLQWLITQKTEDRIELITRVMLETMVEE--TQYLAVYFYKLNCNIC 224 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~--g~~~~y~g~-~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c 224 (346)
++|+|+. |+|++|+. +.+..|.|. ++ .++|.+|+..+..| .+..++.+++.+++.+ .++.++.|+.++|..+
T Consensus 186 ~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~-~~~l~~fi~~~~~p-~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 262 (367)
T 3us3_A 186 KKLTLKL-NEIDFYEAFMEEPVTIPDKPNS-EEEIVNFVEEHRRS-TLRKLKPESMYETWEDDMDGIHIVAFAEEADPDG 262 (367)
T ss_dssp HHHTCCT-TCEEEECTTCSSCEECSSSSCC-HHHHHHHHHHTCSC-SEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHH
T ss_pred HHcCCCC-CeEEEEcCCCCCCeecCCCCCC-HHHHHHHHHHcCcc-ceeecChhhHHHHHhhccCCcEEEEEEcCCChhH
Confidence 9999995 99999997 457889996 55 55999999999887 7789999999887653 4467778999999999
Q ss_pred HHHHHHHHHHHhhcCcC-ceEEEEE---cChhh----hhhCCCc-cccEEEEEeCC
Q psy160 225 DQILEGLEKVDDECDIY-GIHMVKI---QDPQL----AKRYSIK-TFPALVYFRNG 271 (346)
Q Consensus 225 ~~~~~~~~~la~~~~~~-~i~~~~i---~~~~~----~~~~~i~-~~Pti~~~~~g 271 (346)
..+.+.++++|+.+++. ++.|+.+ ..+.. .+.||+. ++|+++++...
T Consensus 263 ~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~ 318 (367)
T 3us3_A 263 YEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVT 318 (367)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecc
Confidence 99999999999999864 5889988 23322 3458887 89999999743
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=256.97 Aligned_cols=206 Identities=21% Similarity=0.381 Sum_probs=179.4
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.+.|.+++.++|++++.++++++|+||++||++|+.+.|.|+++++.+.+. ++.++.+| ++.+|++|+|+++||+
T Consensus 14 ~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~ 93 (241)
T 3idv_A 14 ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93 (241)
T ss_dssp ETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred CCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEE
Confidence 457999999999999999999999999999999999999999999998543 37777765 7789999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhcccc------CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHH
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTE------DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~------~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~l 234 (346)
++|++|+.+.|.|.++.+ ++.+|+.+...+ ..+..++.++++++++.+++++|.||++||++|+.+.|.+.++
T Consensus 94 ~~~~~g~~~~~~g~~~~~-~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~ 172 (241)
T 3idv_A 94 KILKKGQAVDYEGSRTQE-EIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKA 172 (241)
T ss_dssp EEEETTEEEECCSCSCHH-HHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHH
T ss_pred EEEcCCCcccccCcccHH-HHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHH
Confidence 999999888899999855 899999886543 3577889999999998889999999999999999999999999
Q ss_pred HhhcCcC--ceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCccccccchhhhhhhcc
Q psy160 235 DDECDIY--GIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 235 a~~~~~~--~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
++.+.+. .+.++.+ .+++++++|+|+++||+++|++|+.+.|.|.++.+ . +..|+...
T Consensus 173 a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~--~-l~~~l~~~ 235 (241)
T 3idv_A 173 AKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKY--G-IVDYMIEQ 235 (241)
T ss_dssp HHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEECCSCCSHH--H-HHHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeEEEecCCCCHH--H-HHHHHHhh
Confidence 9998642 3888888 57899999999999999999999999999988633 3 55555543
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=247.95 Aligned_cols=190 Identities=18% Similarity=0.321 Sum_probs=165.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccC--CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYG--IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~--i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
|+|||+||++|+++.|.|+++++.+...+ +.++.+| +.++|.+|+|+++||+++|++|..+.|.|.+.. +++.+
T Consensus 37 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~-~~l~~ 115 (241)
T 3idv_A 37 LEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQ-EEIVA 115 (241)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEECCSCSCH-HHHHH
T ss_pred EEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCCcccccCcccH-HHHHH
Confidence 68999999999999999999999985443 7777664 679999999999999999999998899998877 58999
Q ss_pred HHhccCCc---cccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---Chh
Q psy160 76 WLTSQDVF---EIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPR 147 (346)
Q Consensus 76 ~i~~~~~p---~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~ 147 (346)
|+.+...+ ..+..+..++.++|++++.++++++|.||++||++|+.+.|.|.++++.+.+ .++.++.+| +++
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~ 195 (241)
T 3idv_A 116 KVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD 195 (241)
T ss_dssp HHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH
T ss_pred HHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH
Confidence 99876544 2345788899999999999999999999999999999999999999999843 237777765 789
Q ss_pred hHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhccccC
Q psy160 148 YARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTED 192 (346)
Q Consensus 148 l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~ 192 (346)
++++|+|.++||+++|++|+.+.|.|.++.+ +|.+|+.+...+.
T Consensus 196 l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~-~l~~~l~~~~~~~ 239 (241)
T 3idv_A 196 LAKRFDVSGYPTLKIFRKGRPYDYNGPREKY-GIVDYMIEQSGAA 239 (241)
T ss_dssp HHHHTTCCSSSEEEEEETTEEEECCSCCSHH-HHHHHHHHHTTCT
T ss_pred HHHHcCCcccCEEEEEECCeEEEecCCCCHH-HHHHHHHhhhCCC
Confidence 9999999999999999999988899998844 9999999887653
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=247.70 Aligned_cols=262 Identities=12% Similarity=0.163 Sum_probs=196.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc-----cCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCcee--eecCCCCCH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ-----YGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPL--LYDGDLFDE 70 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~-----~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~--~y~G~~~~~ 70 (346)
|+||||||+||+++.|+|+++++.+.. .++.++.+| +.++|.+|+|+++||+++|++|... .|.|.+..
T Consensus 27 V~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G~~~~~~~~G~~~~- 105 (382)
T 2r2j_A 27 VNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSV- 105 (382)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETTEEEEEECCSCCSH-
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCCcEeeeeecCcchH-
Confidence 689999999999999999999999842 237777765 6899999999999999999999865 59998776
Q ss_pred HHHHHHHhccCCccccCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhH
Q psy160 71 EKILTWLTSQDVFEIKNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYA 149 (346)
Q Consensus 71 ~~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~ 149 (346)
++|.+|+.+...| .+..++ .++++. +..++.++|.|+++++.. ..+.|.++|..+++. +.|+.+.. +++
T Consensus 106 ~~l~~~i~~~~~~----~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~~-~~F~~~~~-~~~ 175 (382)
T 2r2j_A 106 KALADYIRQQKSD----PIQEIRDLAEITT-LDRSKRNIIGYFEQKDSD---NYRVFERVANILHDD-CAFLSAFG-DVS 175 (382)
T ss_dssp HHHHHHHHHHHSC----CCEEC-------------CCEEEEEESCSSSH---HHHHHHHHHHHHTTT-CEEEEEES-CC-
T ss_pred HHHHHHHHHhccC----CceecCCHHHHHH-hcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhcc-ceEEEEeh-hhH
Confidence 5999999998887 778885 467887 667788999999988664 356899999988543 66665544 578
Q ss_pred HhhCCCCcceEEEEecC---CcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCCh-hhH
Q psy160 150 RKWGVTKLPAVVYFRHR---FPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCN-ICD 225 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~~g---~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~-~c~ 225 (346)
++++++++| ++++..+ ....|.|.+.+.++|.+|+..+..| .+..++.+++.+++.+..++++.|+.++|. .++
T Consensus 176 ~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p-~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 253 (382)
T 2r2j_A 176 KPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVP-LVREITFENGEELTEEGLPFLILFHMKEDTESLE 253 (382)
T ss_dssp -------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSC-SSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHH
T ss_pred HhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccC-ceEecChhhHHHHhcCCCcEEEEEecCCchHHHH
Confidence 899999999 6666542 3677999983356999999999877 677999999999988888999999999874 455
Q ss_pred HHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc--cccEEEEEeCCeEEEe
Q psy160 226 QILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK--TFPALVYFRNGNPLIF 276 (346)
Q Consensus 226 ~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~--~~Pti~~~~~g~~~~y 276 (346)
.+...+.+++..+++ .+.|+.+ ....+++.||++ ++|+++++..++...|
T Consensus 254 ~~~~~~~~~~~~~~~-~i~f~~id~~~~~~~~~~~gl~~~~~P~i~i~~~~~~y~~ 308 (382)
T 2r2j_A 254 IFQNEVARQLISEKG-TINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVF 308 (382)
T ss_dssp HHHHHHHHHTGGGTT-TSEEEEEETTTTHHHHHHTTCCGGGCSEEEEECSSCEEEC
T ss_pred HHHHHHHHHHHHhCC-eeEEEEEchHHhHHHHHHcCCCccCCCEEEEEcchhcCCC
Confidence 666777777777776 7999998 456678899997 6899999876554334
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=244.28 Aligned_cols=218 Identities=15% Similarity=0.217 Sum_probs=186.6
Q ss_pred ccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHH---HH---HHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVK---VL---ERLEKIDGETDNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~---~~---~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
..+.|.+||.++|++++.++++++|.||||||+||.. +. |.|+++++.+++.++.++++| ++.+|++|+|+
T Consensus 11 ~~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~ 90 (367)
T 3us3_A 11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT 90 (367)
T ss_dssp CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC
T ss_pred CCCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC
Confidence 4557999999999999999999999999999999732 22 689999999876568898887 78999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHH
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~l 234 (346)
++||+++|++|++..|.|.++.+ +|++|+.+...+.+....+.++++++++ +++.++|.|+++||+ ...+.|.++
T Consensus 91 ~~PTl~~f~~G~~~~y~G~~~~~-~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~ 166 (367)
T 3us3_A 91 EEDSIYVFKEDEVIEYDGEFSAD-TLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEA 166 (367)
T ss_dssp STTEEEEEETTEEEECCSCCSHH-HHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHH
T ss_pred cCceEEEEECCcEEEeCCCCCHH-HHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHH
Confidence 99999999999988999999855 9999999998875544446789999988 678999999999876 557899999
Q ss_pred HhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEEeecC-ccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 235 DDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLIFEGE-NKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 235 a~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~y~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
|..+++ .+.|+.+.+.+++++|+++. |+|++|++ +.+..|.|. ++.+ .+..|++....|++++++.++...+
T Consensus 167 A~~~~~-~~~F~~~~~~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~~---~l~~fi~~~~~p~v~elt~~~~~~~ 241 (367)
T 3us3_A 167 AEEFHP-YIPFFATFDSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSEE---EIVNFVEEHRRSTLRKLKPESMYET 241 (367)
T ss_dssp HHHHTT-TSCEEEECCHHHHHHHTCCT-TCEEEECTTCSSCEECSSSSCCHH---HHHHHHHHTCSCSEEECCGGGHHHH
T ss_pred HHhhcC-CcEEEEECCHHHHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCHH---HHHHHHHHcCccceeecChhhHHHH
Confidence 999986 78999998899999999985 99999997 467899995 5432 3888999999999999999875433
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=238.03 Aligned_cols=216 Identities=13% Similarity=0.252 Sum_probs=186.0
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-------HHHHHhhccCCCcEEEEeC---ChhhHHhhCCC
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-------LEKIDGETDNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-------~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
.+.|.+|+.++|++.+.++++++|.||||||+ |+.+.|. |+++++.+++.++.++.+| ++++|++|+|+
T Consensus 10 ~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~ 88 (350)
T 1sji_A 10 KDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFD 88 (350)
T ss_dssp CCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCC
T ss_pred CCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCC
Confidence 45788999999999998889999999999999 9988888 9999999865568888876 78899999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHH
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKV 234 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~l 234 (346)
++||+++|++|++..|.|.++.+ +|.+|+.+...+......+.++++++++ +++.++|.|+++||. ...+.|.++
T Consensus 89 ~~Pt~~~~~~g~~~~~~G~~~~~-~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~ 164 (350)
T 1sji_A 89 EEGSLYVLKGDRTIEFDGEFAAD-VLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEA 164 (350)
T ss_dssp STTEEEEEETTEEEEECSCCCHH-HHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHH
T ss_pred ccceEEEEECCcEEEecCCCCHH-HHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHH
Confidence 99999999999988899999855 9999999998875443336789999888 778899999999875 456899999
Q ss_pred HhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeC--CeEEEeecC-ccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 235 DDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN--GNPLIFEGE-NKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 235 a~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~--g~~~~y~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
|..+++ ++.|+.+.+++++++++++ +|++++|++ +.+..|.|. ++.+. +..|++....|++++++.++...+
T Consensus 165 A~~~~~-~~~f~~~~~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~---l~~fi~~~~~p~v~elt~~~~~~~ 239 (350)
T 1sji_A 165 AEHFQP-YIKFFATFDKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEE---LVEFVKEHQRPTLRRLRPEDMFET 239 (350)
T ss_dssp HHHTTT-TSEEEEECCHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHH---HHHHHHHHCCCSEEECCTTTHHHH
T ss_pred HHhhcc-CcEEEEECCHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHH---HHHHHHHcCccchhhcChhhHHHH
Confidence 999986 7999999899999999999 999999986 457889997 54322 888999999999999999985443
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=215.23 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=148.8
Q ss_pred CeecCC-CChhhHHHHHHHHHHHhhhcccCCeEEEcC-----ChHHHHhcCCCCCCeEEEEeCCce--eeecCCCCCHHH
Q psy160 1 MYINDE-NCPECDDILEELEHIDGDADQYGIDMVKIS-----DTEAAAKYNIINLPSLVYFRKQVP--LLYDGDLFDEEK 72 (346)
Q Consensus 1 v~Fy~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~~c~~~~i~~~Ptl~~f~~~~~--~~y~G~~~~~~~ 72 (346)
|+||++ ||++|+++.|.|+++++..+ +|.++.+| ++++|.+|+|+++||+++|++|.. ..|.|.+.. ++
T Consensus 27 v~f~~~~~C~~C~~~~~~~~~la~~~~--~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~~-~~ 103 (226)
T 1a8l_A 27 IVFVRKDHCQYCDQLKQLVQELSELTD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAG-HE 103 (226)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHTTCT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCT-TH
T ss_pred EEEecCCCCchhHHHHHHHHHHHhhCC--ceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCceeeEEEeccCcH-HH
Confidence 579999 99999999999999997533 46666554 578999999999999999998853 578898776 47
Q ss_pred HHHHHhccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccC---CCcEEEEeC---C
Q psy160 73 ILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDN---MDITFVKMA---D 145 (346)
Q Consensus 73 i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~---~~i~~~~~~---~ 145 (346)
+.+|+...... ......+++++++.+...++++ +|.||++||++|+++.|.|+++++.+.. .++.++.+| +
T Consensus 104 l~~~l~~~l~~--~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~ 181 (226)
T 1a8l_A 104 FAAFLEDIVDV--SREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY 181 (226)
T ss_dssp HHHHHHHHHHH--HHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC
T ss_pred HHHHHHHHHhh--cCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC
Confidence 88887764322 1245678999999887776777 9999999999999999999999998851 247777775 7
Q ss_pred hhhHHhhCCCCcceEEEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 146 PRYARKWGVTKLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 146 ~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.++++|+|.++||+++|++|+ ...|.|..+.+ ++.+|+.+.
T Consensus 182 ~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~-~l~~~l~~~ 224 (226)
T 1a8l_A 182 PEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEK-MFLEKLLSA 224 (226)
T ss_dssp HHHHHHTTCCSSCEEEEEETTEEEEEEESCCCHH-HHHHHHHHH
T ss_pred HHHHHhCCCcccCeEEEEeCCceeEEEcCCCCHH-HHHHHHHHh
Confidence 7899999999999999999887 45689988844 899998764
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.70 Aligned_cols=187 Identities=15% Similarity=0.214 Sum_probs=151.8
Q ss_pred CHHHHHHHH-h--cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEE
Q psy160 93 NRRMLDKLL-E--ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 93 ~~~~~~~~~-~--~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~ 163 (346)
+.+.+++++ . +++.++++||++ ||++|+.+.|.|+++++... ++.++.+| ++++|++|||+++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~--~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~ 85 (226)
T 1a8l_A 8 DKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTIT 85 (226)
T ss_dssp HHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCC--ceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence 456666766 3 235678999999 99999999999999997532 47777765 5689999999999999999
Q ss_pred ecCC--cceecCCcchhHHHHHHHhhccc-cCcEEEccHHHHHHHHhccceE-EEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 164 RHRF--PSIYRGDLSEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQYL-AVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 164 ~~g~--~~~y~g~~~~~~~i~~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
++|+ ...|.|..... ++.+|+..... ......++.++++.+.+.++++ +|.||++||++|+.+.|.++++++.+.
T Consensus 86 ~~g~~~~~~~~G~~~~~-~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~ 164 (226)
T 1a8l_A 86 QDGKDFGVRYFGLPAGH-EFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENT 164 (226)
T ss_dssp ETTBCCSEEEESCCCTT-HHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred cCCceeeEEEeccCcHH-HHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcc
Confidence 9886 36799987744 78888877543 1234578888998887766777 999999999999999999999999986
Q ss_pred c---CceEEEEE---cChhhhhhCCCccccEEEEEeCCeE-EEeecCccc
Q psy160 240 I---YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP-LIFEGENKI 282 (346)
Q Consensus 240 ~---~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~-~~y~g~~~~ 282 (346)
+ .++.++.+ .+++++++|+|+++||+++|++|+. ..|.|.++.
T Consensus 165 ~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 214 (226)
T 1a8l_A 165 KAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPE 214 (226)
T ss_dssp HTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEEESCCCH
T ss_pred cccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCceeEEEcCCCCH
Confidence 1 26888888 6788999999999999999999974 457887763
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=213.03 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=147.6
Q ss_pred cCCCChhhHHHHHHHHHHHhhhc-ccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCC-ceeeecCCCCCHHHHHHHHh
Q psy160 4 NDENCPECDDILEELEHIDGDAD-QYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQ-VPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 4 y~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~-~~~~y~G~~~~~~~i~~~i~ 78 (346)
++|||+||+++.|+|+++++++. ...|.++.+| ++++|.+|+|+++||+++|++| .+..|.|.+.. +++.+|+.
T Consensus 33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~-~~l~~~~~ 111 (229)
T 2ywm_A 33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAG-LEFTTLIN 111 (229)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCCCT-THHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCccH-HHHHHHHH
Confidence 48999999999999999988773 2357777776 7899999999999999999865 45679998877 48999987
Q ss_pred ccCCccccCceeecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCC
Q psy160 79 SQDVFEIKNEIEEVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGV 154 (346)
Q Consensus 79 ~~~~p~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i 154 (346)
..... ...+..+++++++.++..++++ ++.||++||++|+.+.|.|++++..+. ++.++.+| +++++++|+|
T Consensus 112 ~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v 187 (229)
T 2ywm_A 112 GIFHV--SQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASENQDLAEQFQV 187 (229)
T ss_dssp HHHHH--HTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGGCHHHHHHTTC
T ss_pred HHHhc--cCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCCCHHHHHHcCC
Confidence 65432 2357789999999988766666 888999999999999999999999873 47777765 7889999999
Q ss_pred CCcceEEEEecCCcceecCCcchhHHHHHHHhhcc
Q psy160 155 TKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 155 ~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
.++||+++ +|+...|.|..+.+ +|.+|+.+..
T Consensus 188 ~~~Pt~~~--~G~~~~~~G~~~~~-~l~~~l~~~~ 219 (229)
T 2ywm_A 188 VGVPKIVI--NKGVAEFVGAQPEN-AFLGYIMAVY 219 (229)
T ss_dssp CSSSEEEE--GGGTEEEESCCCHH-HHHHHHHHHH
T ss_pred cccCEEEE--CCEEEEeeCCCCHH-HHHHHHHHHh
Confidence 99999998 77766699988844 8999987654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=209.23 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=150.7
Q ss_pred HHHHHHHH--hcCCcEEEEEE-----CCCChhHHHHHHHHHHHHhhcc-CCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 94 RRMLDKLL--EENEFVTVFFY-----ETDHKDSVKVLERLEKIDGETD-NMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 94 ~~~~~~~~--~~~~~~lv~F~-----~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+.+++ ...++++|.|| +|||++|+.+.|+|.++++.+. ..++.++.+| ++++|++|+|+++||+++
T Consensus 8 ~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~ 87 (229)
T 2ywm_A 8 RMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVI 87 (229)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEE
Confidence 35566666 33466666666 8999999999999999988772 2348888877 889999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHHhhccc-cCcEEEccHHHHHHHHhccceE-EEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWLITQKT-EDRIELITRVMLETMVEETQYL-AVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi~~~~~-~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
|++|. ...|.|.+... ++.+|+..... ...+..++.++++.+.+.++++ ++.||++||++|+.+.|.+++++..+.
T Consensus 88 ~~~~~~~~~~~G~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~ 166 (229)
T 2ywm_A 88 EGDKDYGIRYIGLPAGL-EFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND 166 (229)
T ss_dssp ESSSCCCEEEESCCCTT-HHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT
T ss_pred ECCCcccceecCCccHH-HHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC
Confidence 98655 67899988755 89999887543 2345678999999987766666 788999999999999999999999983
Q ss_pred cCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCccc
Q psy160 240 IYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKI 282 (346)
Q Consensus 240 ~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~ 282 (346)
++.++.+ .+++++++|+|+++||+++ +|+...|.|.++.
T Consensus 167 --~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~~~~~~G~~~~ 208 (229)
T 2ywm_A 167 --YITSKVIDASENQDLAEQFQVVGVPKIVI--NKGVAEFVGAQPE 208 (229)
T ss_dssp --TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGGTEEEESCCCH
T ss_pred --CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCEEEEeeCCCCH
Confidence 6888888 6788999999999999998 7886668998763
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=235.19 Aligned_cols=215 Identities=13% Similarity=0.224 Sum_probs=185.4
Q ss_pred ceeecCHHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEVNRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.|.+||+++|++.+.++ ++++|+||+|||++|+++.|.|+++++.+.+. +.++.+| ++.+|++|+|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Ptl~ 80 (481)
T 3f8u_A 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTANTNTCNKYGVSGYPTLK 80 (481)
T ss_dssp CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence 57899999999999887 89999999999999999999999999998664 7777776 88999999999999999
Q ss_pred EEecCC-cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc
Q psy160 162 YFRHRF-PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI 240 (346)
Q Consensus 162 ~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~ 240 (346)
+|++|+ ...|.|.++.+ .|.+|+.+...|......+.++++++++.++.++|.|+.++|.. ..+.|.++|..+++
T Consensus 81 ~~~~g~~~~~~~G~~~~~-~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~---~~~~f~~~a~~~~~ 156 (481)
T 3f8u_A 81 IFRDGEEAGAYDGPRTAD-GIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSE---AHSEFLKAASNLRD 156 (481)
T ss_dssp EEETTEEEEECCSCSSHH-HHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCH---HHHHHHHHHHHHTT
T ss_pred EEeCCceeeeecCccCHH-HHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccc---hHHHHHHHHHHhcc
Confidence 999996 67899998854 99999999998866666688999999999999999999988764 46889999999986
Q ss_pred CceEEEEEcChhhhhhCCCccccEEEEEe--------CCeEEEee-cCccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 241 YGIHMVKIQDPQLAKRYSIKTFPALVYFR--------NGNPLIFE-GENKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 241 ~~i~~~~i~~~~~~~~~~i~~~Pti~~~~--------~g~~~~y~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
++.|+.+.+.+++++|+++..| +++|+ ++.+..|. |..+.+ .+..|++....|++++++.++...+
T Consensus 157 -~~~F~~~~~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~---~l~~fi~~~~~p~v~e~t~~n~~~~ 231 (481)
T 3f8u_A 157 -NYRFAHTNVESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSG---KIKKFIQENIFGICPHMTEDNKDLI 231 (481)
T ss_dssp -TSCEEEECCHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHH---HHHHHHHHHTTTTSCEECTTTHHHH
T ss_pred -CceEEEECCHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHH---HHHHHHHHhCCCCccccChhHHHHh
Confidence 7889999899999999998765 88888 45678898 555432 3889999999999999999985554
Q ss_pred c
Q psy160 312 F 312 (346)
Q Consensus 312 ~ 312 (346)
+
T Consensus 232 ~ 232 (481)
T 3f8u_A 232 Q 232 (481)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=225.78 Aligned_cols=215 Identities=15% Similarity=0.225 Sum_probs=157.7
Q ss_pred CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-----CCCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 87 NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD-----NMDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-----~~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
+.|..|+.++|++++.++++++|.||||||++|+++.|.|+++++.++ ..++.++.+| +..+|++|+|+++|
T Consensus 5 ~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P 84 (382)
T 2r2j_A 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP 84 (382)
T ss_dssp ---CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEES
T ss_pred CceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCC
Confidence 468899999999999999999999999999999999999999999984 2248888876 78999999999999
Q ss_pred eEEEEecCCcc--eecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHh
Q psy160 159 AVVYFRHRFPS--IYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDD 236 (346)
Q Consensus 159 tl~~~~~g~~~--~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~ 236 (346)
|+++|++|+.. .|.|.++.+ .|.+|+.+...+.+....+.+++++ +..++.++|.|+++++.+ ..+.|.++|.
T Consensus 85 t~~~f~~G~~~~~~~~G~~~~~-~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~---~~~~f~~~A~ 159 (382)
T 2r2j_A 85 TLKLFRNGMMMKREYRGQRSVK-ALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSD---NYRVFERVAN 159 (382)
T ss_dssp EEEEEETTEEEEEECCSCCSHH-HHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSH---HHHHHHHHHH
T ss_pred EEEEEeCCcEeeeeecCcchHH-HHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCCh---hHHHHHHHHH
Confidence 99999999854 599998854 9999999998875543334567877 677788999999988764 3678999999
Q ss_pred hcCcCceEEEEEcChhhhhhCCCccccEEEEEeCC---eEEEeecCccccccchhhhhhhccCCCCCCcccCCCCCCc
Q psy160 237 ECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG---NPLIFEGENKILKGTYIGTYISTKAFSLIPFCFSEKHPGA 311 (346)
Q Consensus 237 ~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g---~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 311 (346)
.+++ ++.|+.+.+ ++++.++++++| +++.+.+ ....|.|.+.+ . ..+..|++....|++++++.++...+
T Consensus 160 ~~~~-~~~F~~~~~-~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~-~-~~l~~fi~~~~~p~v~elt~~~~~~~ 232 (382)
T 2r2j_A 160 ILHD-DCAFLSAFG-DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTN-F-DVTYNWIQDKCVPLVREITFENGEEL 232 (382)
T ss_dssp HHTT-TCEEEEEES-CC--------CE-EEEECSSSSSCCEECCSCTTC-H-HHHHHHHHHHHSCSSEECCHHHHHHH
T ss_pred Hhhc-cceEEEEeh-hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCC-H-HHHHHHHHhcccCceEecChhhHHHH
Confidence 9986 677777644 678889999999 6555542 46889998732 1 22888999999999999998875433
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=218.89 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=151.4
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-----ChHHHHhcCCCC--CCeEEEEeCC-ceeeec---CCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-----DTEAAAKYNIIN--LPSLVYFRKQ-VPLLYD---GDLFD 69 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~~c~~~~i~~--~Ptl~~f~~~-~~~~y~---G~~~~ 69 (346)
|+||++||++|+++.|.|+++|+.++.. +.|+.+| +..+|+.|||++ +|++++|..+ ....|. |.++.
T Consensus 140 v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~ 218 (361)
T 3uem_A 140 LLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTA 218 (361)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCH
T ss_pred EEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCH
Confidence 5799999999999999999999998432 6666554 568999999998 9999999974 445675 55555
Q ss_pred HHHHHHHHhccCC----c--------c--ccCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhcc
Q psy160 70 EEKILTWLTSQDV----F--------E--IKNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETD 134 (346)
Q Consensus 70 ~~~i~~~i~~~~~----p--------~--~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~ 134 (346)
++|.+|+.+... | . ..+.+..++.++|++++. ++++++|.||||||++|+++.|.|+++++.++
T Consensus 219 -~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~ 297 (361)
T 3uem_A 219 -ERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK 297 (361)
T ss_dssp -HHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhc
Confidence 689999976321 1 0 234688999999999884 67899999999999999999999999999985
Q ss_pred CC-CcEEEEeC-ChhhHHhhCCCCcceEEEEecC--C-cceecCCcchhHHHHHHHhhccc
Q psy160 135 NM-DITFVKMA-DPRYARKWGVTKLPAVVYFRHR--F-PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 135 ~~-~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g--~-~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
+. ++.++.+| ....+.+|+|.++||+++|.+| + +..|.|.++.+ +|.+|+.++..
T Consensus 298 ~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~-~l~~~l~~~~~ 357 (361)
T 3uem_A 298 DHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLD-GFKKFLESGGQ 357 (361)
T ss_dssp TCSSEEEEEEETTTCBCSSCCCCSSSEEEEECSSSSCCCEECCSCSSHH-HHHHHHTTTSC
T ss_pred cCCcEEEEEEECCccchhhcCCcccCeEEEEECCCCcceeEecCCCCHH-HHHHHHHhcCC
Confidence 43 58888887 3334889999999999999765 3 67899998844 99999998754
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=201.51 Aligned_cols=214 Identities=15% Similarity=0.184 Sum_probs=167.6
Q ss_pred ccCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 85 IKNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
....|.+||.++|++++. .+++++|+|||+||++|+.+.|.|+++++.+.+ ..+..+.+| +..+|++|+|.++||
T Consensus 15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt 94 (298)
T 3ed3_A 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94 (298)
T ss_dssp SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSE
T ss_pred CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccce
Confidence 345899999999999995 567899999999999999999999999999854 334445555 678999999999999
Q ss_pred EEEEecCC------------------cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhc-cceEEEEEEcCC
Q psy160 160 VVYFRHRF------------------PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEE-TQYLAVYFYKLN 220 (346)
Q Consensus 160 l~~~~~g~------------------~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~ 220 (346)
+++|++|+ +..|.|.++.+ .|++|+.+...+.+....+.++++++++. +++.++.| ...
T Consensus 95 ~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~-~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~f-s~~ 172 (298)
T 3ed3_A 95 LMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA-PIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLF-SKQ 172 (298)
T ss_dssp EEEEECCCC-------------CCCEEEECCSCCSHH-HHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEE-ESS
T ss_pred EEEEECCceeecccccccccccccccceeecCCcCHH-HHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEE-cCC
Confidence 99999886 56799999855 99999999987755544467889998876 46666666 332
Q ss_pred ChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhC-----C-----C-------------ccccEEEEEeC--CeEEE
Q psy160 221 CNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRY-----S-----I-------------KTFPALVYFRN--GNPLI 275 (346)
Q Consensus 221 c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~-----~-----i-------------~~~Pti~~~~~--g~~~~ 275 (346)
. ...+.|.++|..+.+ .+.|+.+.+.+++..+ + | ...|+|++|+. ++++.
T Consensus 173 ~----~~~~~f~~~A~~~~~-~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~ 247 (298)
T 3ed3_A 173 D----KISPVYKSIALDWLG-KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWE 247 (298)
T ss_dssp S----SCCHHHHHHHHHTBT-TEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEE
T ss_pred C----cchHHHHHHHHHhhc-CcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEE
Confidence 2 235789999999987 8999999666665433 2 2 57899999985 67999
Q ss_pred eecCccccccchhhhhhh--ccCCCCCCcccCCC
Q psy160 276 FEGENKILKGTYIGTYIS--TKAFSLIPFCFSEK 307 (346)
Q Consensus 276 y~g~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~ 307 (346)
|.|...+ . ..+..|+. ....|.+++++..+
T Consensus 248 y~g~~~~-~-~~i~~fi~~~~~~~p~~~~ls~~~ 279 (298)
T 3ed3_A 248 YEGNSIN-K-NDISKFLRDTFSITPNEGPFSRRS 279 (298)
T ss_dssp CCCSSCC-H-HHHHHHHHHHHTCCCSSSTTSHHH
T ss_pred eccccCC-H-HHHHHHHHhhcCCCCCcCCCchHH
Confidence 9974321 2 22777777 77789998888764
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=192.48 Aligned_cols=182 Identities=13% Similarity=0.223 Sum_probs=140.7
Q ss_pred CeecCCC--ChhhHHHHHHHHHHHhhhcc-cC---CeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHH
Q psy160 1 MYINDEN--CPECDDILEELEHIDGDADQ-YG---IDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEE 71 (346)
Q Consensus 1 v~Fy~~~--C~~c~~~~~~~~~~a~~~~~-~~---i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~ 71 (346)
|.||++| |++|+.+.+.++++|+..+. .| |.++.+| ++++|.+|+|+++||+++| +| ...|.|.... +
T Consensus 30 v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-~g-~~~~~G~~~~-~ 106 (243)
T 2hls_A 30 VHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-GG-EVRWTGIPAG-E 106 (243)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-TT-TEEEESCCCT-T
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-CC-ceeEcCCCcH-H
Confidence 5789999 99999999999999987533 11 6666654 6889999999999999999 66 7789897665 3
Q ss_pred HHHHHHhccCCccccCceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhcc---CCCcEEEEeC---
Q psy160 72 KILTWLTSQDVFEIKNEIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETD---NMDITFVKMA--- 144 (346)
Q Consensus 72 ~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~---~~~i~~~~~~--- 144 (346)
.+.+|+...... ...-..++++.++.+..- ++.+++.||+|||++|+++.|.|++++..+. ..++.++.+|
T Consensus 107 ~l~~fv~~~l~~--~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~ 184 (243)
T 2hls_A 107 EIRALVEVIMRL--SEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE 184 (243)
T ss_dssp HHHHHHHHHHHH--HTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT
T ss_pred HHHHHHHHHHhc--cCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc
Confidence 777776543221 112234667777766543 4667899999999999999999999999872 1357777765
Q ss_pred ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhcccc
Q psy160 145 DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 145 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++.++++|+|.++||+++ +|+. .|.|.++.+ +|.+++.+...+
T Consensus 185 ~~~~~~~~~V~~vPt~~i--~G~~-~~~G~~~~~-~l~~~l~~~~~~ 227 (243)
T 2hls_A 185 NPDIADKYGVMSVPSIAI--NGYL-VFVGVPYEE-DFLDYVKSAAEG 227 (243)
T ss_dssp CHHHHHHTTCCSSSEEEE--TTEE-EEESCCCHH-HHHHHHHHHHTT
T ss_pred CHHHHHHcCCeeeCeEEE--CCEE-EEeCCCCHH-HHHHHHHHHhhc
Confidence 678999999999999988 7764 499998844 899999887654
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=215.18 Aligned_cols=214 Identities=9% Similarity=0.177 Sum_probs=174.4
Q ss_pred ccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 85 IKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
..+.|.+|++++|++++.++++++|.||+|||+||+++.|.|+++++.+.+.++.++.+| ++.+|++|+|+++||++
T Consensus 12 ~~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 91 (504)
T 2b5e_A 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK 91 (504)
T ss_dssp TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CCCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence 455899999999999999899999999999999999999999999999966568888876 78999999999999999
Q ss_pred EEecCC---cceecCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccc--eEEEEEEcCCChhhHHHHHHHHHHHh
Q psy160 162 YFRHRF---PSIYRGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQ--YLAVYFYKLNCNICDQILEGLEKVDD 236 (346)
Q Consensus 162 ~~~~g~---~~~y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~--~~lv~F~~~~c~~c~~~~~~~~~la~ 236 (346)
+|++|+ ...|.|.++.+ .|.+|+.+...+ .+..++. ++++++.++ ..+|.|+.+..+ ...+.|.++|.
T Consensus 92 ~~~~g~~~~~~~~~G~~~~~-~l~~~l~~~~~~-~v~~i~~--~~~~~~~~~~~~~~v~~f~~~~~---~~~~~f~~~A~ 164 (504)
T 2b5e_A 92 IFKNSDVNNSIDYEGPRTAE-AIVQFMIKQSQP-AVAVVAD--LPAYLANETFVTPVIVQSGKIDA---DFNATFYSMAN 164 (504)
T ss_dssp EEETTCTTCEEECCSCCSHH-HHHHHHHHHTSC-SEEECSC--HHHHHHHSCCSSCEEEEEESCCH---HHHHHHHHHHH
T ss_pred EEeCCccccceeecCCCCHH-HHHHHHHHhcCC-cceeHHH--HHHHHhcCCCceEEEEEeCCCCc---hHHHHHHHHHH
Confidence 999988 66799998855 999999999877 4556666 888887777 677777776543 55789999999
Q ss_pred hcCcCceEEEEEcChhhhhhCCCccccEEEEEeC-CeEEEeecC-ccccccchhhhhhhccCCCCCCcccCCCCCCcc
Q psy160 237 ECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRN-GNPLIFEGE-NKILKGTYIGTYISTKAFSLIPFCFSEKHPGAF 312 (346)
Q Consensus 237 ~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~-g~~~~y~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 312 (346)
.+++ ++.|+.+. ++++++++. +++|+. +.++.|.|. ........+..|++....|++++++.++...++
T Consensus 165 ~~~~-~~~F~~~~--~~~~~~~~~----i~l~~~~~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~ 235 (504)
T 2b5e_A 165 KHFN-DYDFVSAE--NADDDFKLS----IYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYV 235 (504)
T ss_dssp HTTT-TCEEEEEE--CTTSCCEEE----EEETTEEEEEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHH
T ss_pred Hhhc-CcEEEEEH--HHHHhcCCe----EEecCCCCcccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHh
Confidence 9986 78888776 677888765 777764 367789887 410011228889999999999999988755443
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=185.41 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=142.0
Q ss_pred HHHHHHHHhc-CCcEEEEEECCC--ChhHHHHHHHHHHHHhhccC--CC--cEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 94 RRMLDKLLEE-NEFVTVFFYETD--HKDSVKVLERLEKIDGETDN--MD--ITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 94 ~~~~~~~~~~-~~~~lv~F~~~~--C~~c~~~~~~~~~~a~~~~~--~~--i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+.+.++++. .++++|.||++| |++|+.+.+.++++|+...+ -+ +.|+.+| ++++|++|||+++||+++|
T Consensus 14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~ 93 (243)
T 2hls_A 14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL 93 (243)
T ss_dssp HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE
Confidence 4566666654 368999999999 99999999999999987422 11 6777665 7889999999999999999
Q ss_pred ecCCcceecCCcchhHHHHHHHhhccc-cCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcC--
Q psy160 164 RHRFPSIYRGDLSEEEEVLQWLITQKT-EDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECD-- 239 (346)
Q Consensus 164 ~~g~~~~y~g~~~~~~~i~~fi~~~~~-~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-- 239 (346)
+| ...|.|..... ++..|+..... ......++.+.++.+.+ .++.+++.||+|||++|+.+.|.|.+++..+.
T Consensus 94 -~g-~~~~~G~~~~~-~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~ 170 (243)
T 2hls_A 94 -GG-EVRWTGIPAGE-EIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQ 170 (243)
T ss_dssp -TT-TEEEESCCCTT-HHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred -CC-ceeEcCCCcHH-HHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccc
Confidence 67 77898877644 77777766432 11112456666666544 35577889999999999999999999999882
Q ss_pred c-CceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCccc
Q psy160 240 I-YGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKI 282 (346)
Q Consensus 240 ~-~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~ 282 (346)
+ .++.+..+ .+++++++|+|+++||+++ +|+. .|.|.++.
T Consensus 171 ~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~-~~~G~~~~ 214 (243)
T 2hls_A 171 GNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYL-VFVGVPYE 214 (243)
T ss_dssp TCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-EEESCCCH
T ss_pred cCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEE-EEeCCCCH
Confidence 1 26888888 5788999999999999988 8875 49998863
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-23 Score=184.06 Aligned_cols=195 Identities=15% Similarity=0.223 Sum_probs=148.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc-cCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCc-----------------
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ-YGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQV----------------- 59 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~----------------- 59 (346)
|+|||+||++|+++.|.|+++++.+.. ..+..+.++ +.++|.+|+|+++||+++|++|.
T Consensus 40 V~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~ 119 (298)
T 3ed3_A 40 VEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAH 119 (298)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCCC-------------CCC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCceeecccccccccccccc
Confidence 689999999999999999999999843 445556665 67999999999999999999875
Q ss_pred -eeeecCCCCCHHHHHHHHhccCCccccCceeecC-HHHHHHHHhcC-CcEEEEEECCCChhHHHHHHHHHHHHhhccCC
Q psy160 60 -PLLYDGDLFDEEKILTWLTSQDVFEIKNEIEEVN-RRMLDKLLEEN-EFVTVFFYETDHKDSVKVLERLEKIDGETDNM 136 (346)
Q Consensus 60 -~~~y~G~~~~~~~i~~~i~~~~~p~~~~~v~~l~-~~~~~~~~~~~-~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~ 136 (346)
+..|.|.++. ++|++|+.+...+ .+..++ .+++++++..+ .+.+++|.. .. ...+.|..+|..+.+
T Consensus 120 ~~~~y~G~r~~-~~i~~fl~~~~~~----~v~~i~~~~~l~~~l~~~~~~~vi~fs~-~~----~~~~~f~~~A~~~~~- 188 (298)
T 3ed3_A 120 ANEVYSGARTL-APIVDFSLSRIRS----YVKKFVRIDTLGSLLRKSPKLSVVLFSK-QD----KISPVYKSIALDWLG- 188 (298)
T ss_dssp EEEECCSCCSH-HHHHHHHHTTCCC----CEEECSCGGGHHHHHTSCSSEEEEEEES-SS----SCCHHHHHHHHHTBT-
T ss_pred cceeecCCcCH-HHHHHHHHHhccc----ccEEcCCHHHHHHHHhcCCceEEEEEcC-CC----cchHHHHHHHHHhhc-
Confidence 6789999877 5999999999887 888885 68899999875 556666643 22 234689999998865
Q ss_pred CcEEEEeCChhhHHhh-----C-----C-------------CCcceEEEEec--CCcceecCCcchhHHHHHHHhh--cc
Q psy160 137 DITFVKMADPRYARKW-----G-----V-------------TKLPAVVYFRH--RFPSIYRGDLSEEEEVLQWLIT--QK 189 (346)
Q Consensus 137 ~i~~~~~~~~~l~~~~-----~-----i-------------~~~Ptl~~~~~--g~~~~y~g~~~~~~~i~~fi~~--~~ 189 (346)
.+.|+.++..+++..+ + | ...|+|++|+. ++++.|+|...+.++|.+||.+ ..
T Consensus 189 ~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~ 268 (298)
T 3ed3_A 189 KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSI 268 (298)
T ss_dssp TEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcCC
Confidence 3889988766666433 2 2 67999999985 4588899754346699999994 44
Q ss_pred ccCcEEEccH-HHHHHHHh
Q psy160 190 TEDRIELITR-VMLETMVE 207 (346)
Q Consensus 190 ~~~~v~~l~~-~~~~~~~~ 207 (346)
.| .+..++. +.|.+.++
T Consensus 269 ~p-~~~~ls~~~~~~~~~~ 286 (298)
T 3ed3_A 269 TP-NEGPFSRRSEYIAYLK 286 (298)
T ss_dssp CC-SSSTTSHHHHHHHHHH
T ss_pred CC-CcCCCchHHHHHHHHh
Confidence 44 4456665 44444433
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=166.77 Aligned_cols=198 Identities=11% Similarity=0.194 Sum_probs=142.9
Q ss_pred cCceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC-----ChhhHHhhCCCCc
Q psy160 86 KNEIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA-----DPRYARKWGVTKL 157 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~-----~~~l~~~~~i~~~ 157 (346)
.+.|.+++.++|++.+.+ +++++|.||++||++|+++.|.|+++++.+.+ .++.++.+| +.++|++|+|.++
T Consensus 11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~ 90 (244)
T 3q6o_A 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF 90 (244)
T ss_dssp TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence 458999999999997754 48999999999999999999999999999854 347777665 5789999999999
Q ss_pred ceEEEEecCC------cceecCCcchhHHHHHHHhhcccc---------CcEEEccHHHHHHHHh--ccceEEEEEEcCC
Q psy160 158 PAVVYFRHRF------PSIYRGDLSEEEEVLQWLITQKTE---------DRIELITRVMLETMVE--ETQYLAVYFYKLN 220 (346)
Q Consensus 158 Ptl~~~~~g~------~~~y~g~~~~~~~i~~fi~~~~~~---------~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~ 220 (346)
||+++|.+|. ...+.| .+ .+.|.+++.+.... +.+..++.+++++++. ..++..+.|....
T Consensus 91 Pt~~~~~~g~~~~~g~~~~~~g-~~-~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~~ 168 (244)
T 3q6o_A 91 PTVRFFXAFTXNGSGAVFPVAG-AD-VQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGG 168 (244)
T ss_dssp SEEEEECTTCCSSSCEECCCTT-CC-HHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECTT
T ss_pred CEEEEEeCCCcCCCCeeEecCC-CC-HHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEECC
Confidence 9999999743 335666 44 44788888775432 1234556788888764 3456777777765
Q ss_pred ChhhHHHHHHHHHHHhhcCc-CceEEEEE--cChhhhhhCCCccccEEEEEe-CCeEEEeecCccccccchhhhhhhc
Q psy160 221 CNICDQILEGLEKVDDECDI-YGIHMVKI--QDPQLAKRYSIKTFPALVYFR-NGNPLIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 221 c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~-~g~~~~y~g~~~~~~~~~~~~~i~~ 294 (346)
|.. ..+++..+.. ..+.+..+ .+..++++|+|+++|+++++. +|+...++.... ....+..++++
T Consensus 169 ~~~-------~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~~~~~--~r~~~~~~l~~ 237 (244)
T 3q6o_A 169 SYL-------AREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLME--SRSFYTAYLQR 237 (244)
T ss_dssp CCH-------HHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEEECCCSSS--SHHHHHHHHHT
T ss_pred cch-------HHHHHHHhccCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCeEeeccccc--cHHHHHHHHHh
Confidence 432 2333333332 25777777 458999999999999998775 677777765443 33335555543
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-19 Score=151.77 Aligned_cols=196 Identities=9% Similarity=0.130 Sum_probs=156.2
Q ss_pred cCceeec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEe
Q psy160 86 KNEIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 86 ~~~v~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~ 164 (346)
++.+.+| +.+++++++.+++.++|.|+++||. .+.++|.++|+.++ ++.|+.+.++++|+++++++ |+|++|+
T Consensus 8 ~~~~~~l~s~~~~~~~l~~~~v~vVgff~~~~~---~~~~~f~~~A~~l~--~~~F~~t~~~~v~~~~~v~~-p~i~lfk 81 (227)
T 4f9z_D 8 AQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEI---PAVPILHSMVQKFP--GVSFGISTDSEVLTHYNITG-NTICLFR 81 (227)
T ss_dssp -CCCEECCSHHHHHHHHHTSSEEEEEECSCSCS---THHHHHHHHTTTCT--TSEEEEECCHHHHHHTTCCS-SEEEEEE
T ss_pred cCCCeeeCCHHHHHHHHhcCCeEEEEEecCCCc---hhHHHHHHHHHhCC--CceEEEECCHHHHHHcCCCC-CeEEEEE
Confidence 3345555 6799999999999999999999864 78899999999984 59999999999999999998 9999999
Q ss_pred cCC--cceecC----CcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceE-EEEEEcCCChhhHHHHHHHHHHHhh
Q psy160 165 HRF--PSIYRG----DLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYL-AVYFYKLNCNICDQILEGLEKVDDE 237 (346)
Q Consensus 165 ~g~--~~~y~g----~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~-lv~F~~~~c~~c~~~~~~~~~la~~ 237 (346)
++. +..|+| .++ .++|.+|+..+..| .+..++.+++.++..+..+. ++.|..+||++|..+.+.|+++|+.
T Consensus 82 ~~~~~~~~~~~~~~g~~~-~~~l~~fi~~~~~p-lv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~ 159 (227)
T 4f9z_D 82 LVDNEQLNLEDEDIESID-ATKLSRFIEINSLH-MVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKL 159 (227)
T ss_dssp TTTTEEEEECHHHHHTCC-HHHHHHHHHHHCCC-SEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHH
T ss_pred ecCcccccccccccCCCC-HHHHHHHHHHhCCC-ceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHH
Confidence 743 567885 676 44999999999887 77799999999988776444 4557788999999999999999999
Q ss_pred cCcCceEEEEEc-----ChhhhhhCCCc--cccEEEEEeCCe--EEEee-cCccccccchhhhhhh
Q psy160 238 CDIYGIHMVKIQ-----DPQLAKRYSIK--TFPALVYFRNGN--PLIFE-GENKILKGTYIGTYIS 293 (346)
Q Consensus 238 ~~~~~i~~~~i~-----~~~~~~~~~i~--~~Pti~~~~~g~--~~~y~-g~~~~~~~~~~~~~i~ 293 (346)
+++ ++.|+.++ ...+++.||+. ++|+++++..++ ...+. +..+.+ .|..|++
T Consensus 160 ~k~-~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~---~i~~Fv~ 221 (227)
T 4f9z_D 160 FQG-KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVE---HVQNFCD 221 (227)
T ss_dssp TTT-TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHH---HHHHHHH
T ss_pred hhC-CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHH---HHHHHHH
Confidence 997 78899882 34578999998 899999997433 23332 444322 2656654
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=169.62 Aligned_cols=185 Identities=10% Similarity=0.197 Sum_probs=137.9
Q ss_pred cCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC-----ChhhHHhhCCCCc
Q psy160 86 KNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA-----DPRYARKWGVTKL 157 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~-----~~~l~~~~~i~~~ 157 (346)
.+.|.+++.++|++.+. ++++++|.|||+||++|+.+.|.|+++++.+.+ .++.++.+| +.++|++|+|.++
T Consensus 11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~ 90 (519)
T 3t58_A 11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF 90 (519)
T ss_dssp TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence 45799999999999774 458999999999999999999999999999854 347777765 5789999999999
Q ss_pred ceEEEEecCC----c-ceecCCcchhHHHHHHHhhcccc---------CcEEEccHHHHHHHHhc--cceEEEEEEcCCC
Q psy160 158 PAVVYFRHRF----P-SIYRGDLSEEEEVLQWLITQKTE---------DRIELITRVMLETMVEE--TQYLAVYFYKLNC 221 (346)
Q Consensus 158 Ptl~~~~~g~----~-~~y~g~~~~~~~i~~fi~~~~~~---------~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c 221 (346)
||+++|.+|. . ..+.|..+ .+.|.+++.+.... +.+..++.+++++++.. .+++++.|.....
T Consensus 91 PTl~~f~~g~~~G~~~~~~~g~~~-~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~s 169 (519)
T 3t58_A 91 PTVRFFQAFTKNGSGATLPGAGAN-VQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDS 169 (519)
T ss_dssp SEEEEECTTCCSCCCEEECCSSCC-HHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTTC
T ss_pred CEEEEEcCcccCCCceeEecCCCC-HHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCch
Confidence 9999999543 2 34666666 44888888775432 12455677888887653 4577777876542
Q ss_pred hhhHHHHHHHHHHHhhcCc-CceEEEEE--cChhhhhhCCCccccEEEEEe-CCeEEEeec
Q psy160 222 NICDQILEGLEKVDDECDI-YGIHMVKI--QDPQLAKRYSIKTFPALVYFR-NGNPLIFEG 278 (346)
Q Consensus 222 ~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~-~g~~~~y~g 278 (346)
....+++..+.. ..+.+..+ .+.+++++|||+++|+++++. +|+...+..
T Consensus 170 -------~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~~~~v 223 (519)
T 3t58_A 170 -------YLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPV 223 (519)
T ss_dssp -------CHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEEECCC
T ss_pred -------HHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCCceeeccc
Confidence 234455555542 24777666 457999999999999999996 555555543
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=150.61 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=145.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCC--ceeeecC----CCCCHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQ--VPLLYDG----DLFDEEKIL 74 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~--~~~~y~G----~~~~~~~i~ 74 (346)
|-||++|| +.+.++|.++|+.++ .+.|+.+.+.++|.+|++++ |+|++|++. .+..|.| .++. ++|.
T Consensus 32 Vgff~~~~---~~~~~~f~~~A~~l~--~~~F~~t~~~~v~~~~~v~~-p~i~lfk~~~~~~~~~~~~~~g~~~~-~~l~ 104 (227)
T 4f9z_D 32 IGFFQDLE---IPAVPILHSMVQKFP--GVSFGISTDSEVLTHYNITG-NTICLFRLVDNEQLNLEDEDIESIDA-TKLS 104 (227)
T ss_dssp EEECSCSC---STHHHHHHHHTTTCT--TSEEEEECCHHHHHHTTCCS-SEEEEEETTTTEEEEECHHHHHTCCH-HHHH
T ss_pred EEEecCCC---chhHHHHHHHHHhCC--CceEEEECCHHHHHHcCCCC-CeEEEEEecCcccccccccccCCCCH-HHHH
Confidence 46899986 588999999999994 79999999999999999998 999999974 5678885 5655 6999
Q ss_pred HHHhccCCccccCceeecCHHHHHHHHhcCCc-EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----Chhh
Q psy160 75 TWLTSQDVFEIKNEIEEVNRRMLDKLLEENEF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRY 148 (346)
Q Consensus 75 ~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~-~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l 148 (346)
+|+..+..| .|.++|.+|+.+++.++.+ ++++|+.+||++|.++.+.|+++|+.+++. +.|+.+| +..+
T Consensus 105 ~fi~~~~~p----lv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~~~~~ 179 (227)
T 4f9z_D 105 RFIEINSLH----MVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKENGKV 179 (227)
T ss_dssp HHHHHHCCC----SEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGGGHHH
T ss_pred HHHHHhCCC----ceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHhHHHH
Confidence 999999999 9999999999999887744 456678999999999999999999998664 7777665 3468
Q ss_pred HHhhCCC--CcceEEEEecCCc--ceec-CCcchhHHHHHHHhhc
Q psy160 149 ARKWGVT--KLPAVVYFRHRFP--SIYR-GDLSEEEEVLQWLITQ 188 (346)
Q Consensus 149 ~~~~~i~--~~Ptl~~~~~g~~--~~y~-g~~~~~~~i~~fi~~~ 188 (346)
++.||+. .+|++.++..+.. +.+. +..+ .++|.+|+++.
T Consensus 180 l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t-~~~i~~Fv~~~ 223 (227)
T 4f9z_D 180 ISFFKLKESQLPALAIYQTLDDEWDTLPTAEVS-VEHVQNFCDGF 223 (227)
T ss_dssp HHHTTCCGGGCSEEEEEESSSCCEEEETTCCCC-HHHHHHHHHHH
T ss_pred HHHcCCCcccCCEEEEEECCCCccccCCcCCCC-HHHHHHHHHHH
Confidence 8999998 8999999985432 3443 6676 45899998764
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=149.25 Aligned_cols=179 Identities=13% Similarity=0.196 Sum_probs=122.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc--cCCeEEEcC-----ChHHHHhcCCCCCCeEEEEeCC------ceeeecCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ--YGIDMVKIS-----DTEAAAKYNIINLPSLVYFRKQ------VPLLYDGDL 67 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~-----~~~~c~~~~i~~~Ptl~~f~~~------~~~~y~G~~ 67 (346)
|+|||+||++|+++.|.|+++++.+.. .++.++.++ +.++|.+|+|+++||+++|++| ....+.| .
T Consensus 35 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~~~g-~ 113 (244)
T 3q6o_A 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAG-A 113 (244)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEECCCTT-C
T ss_pred EEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeEecCC-C
Confidence 689999999999999999999999854 356665553 5789999999999999999973 3344555 4
Q ss_pred CCHHHHHHHHhccCC------ccccCceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCc
Q psy160 68 FDEEKILTWLTSQDV------FEIKNEIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDI 138 (346)
Q Consensus 68 ~~~~~i~~~i~~~~~------p~~~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i 138 (346)
..+.+.+++.+... |.....+..++.++++.++..+ +...+.|....|.... +++..+ ....+
T Consensus 114 -~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~~~~~~~-------~~~~d~~~~~~i 185 (244)
T 3q6o_A 114 -DVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAR-------EVALDLSQHKGV 185 (244)
T ss_dssp -CHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECTTCCHHH-------HHHHHTTTCTTE
T ss_pred -CHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEECCcchHH-------HHHHHhccCCce
Confidence 33577777754321 1111234566788888887544 5566777776654333 233333 22346
Q ss_pred EEEEeC--ChhhHHhhCCCCcceEEEEe-cCCcceecCCcchhHHHHHHHhhc
Q psy160 139 TFVKMA--DPRYARKWGVTKLPAVVYFR-HRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 139 ~~~~~~--~~~l~~~~~i~~~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.+..++ +..++++|||+++||+++|. +|+...+.........+..++++.
T Consensus 186 ~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~~~~~~r~~~~~~l~~~ 238 (244)
T 3q6o_A 186 AVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRL 238 (244)
T ss_dssp EEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEEECCCSSSSHHHHHHHHHTC
T ss_pred EEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCeEeeccccccHHHHHHHHHhC
Confidence 666555 48999999999999998887 566666765555443555555543
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=134.82 Aligned_cols=103 Identities=14% Similarity=0.240 Sum_probs=88.7
Q ss_pred ccCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhcc----CCCcEEEEeC---ChhhHHhhCCCC
Q psy160 85 IKNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETD----NMDITFVKMA---DPRYARKWGVTK 156 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~----~~~i~~~~~~---~~~l~~~~~i~~ 156 (346)
.+..|.+|+.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+. ..++.++.+| ++++|++|+|++
T Consensus 13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~ 92 (127)
T 3h79_A 13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG 92 (127)
T ss_dssp CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence 345899999999999985 57899999999999999999999999998762 2348888876 779999999999
Q ss_pred cceEEEEecCCc---ceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYFRHRFP---SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~~g~~---~~y~g~~~~~~~i~~fi~~~ 188 (346)
+||+++|++|.. ..|.|.++.+ +|.+|+.+.
T Consensus 93 ~Pt~~~~~~g~~~~~~~~~G~~~~~-~l~~~i~~~ 126 (127)
T 3h79_A 93 FPTMRYYTRIDKQEPFEYSGQRYLS-LVDSFVFQN 126 (127)
T ss_dssp SSEEEEECSSCSSSCEECCSCCCHH-HHHHHHHHH
T ss_pred CCEEEEEeCCCCCCceEecCCccHH-HHHHHHHhc
Confidence 999999998763 6899998854 999999864
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=126.41 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=79.3
Q ss_pred eec-CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 90 EEV-NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 90 ~~l-~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.++ +.++|++.+.+ +++++|.|||+||++|+.+.|.|+++++.+.+ +.++.+| +++++++|+|+++||+++|
T Consensus 3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~~~~l~~~~~V~~~PT~~~~ 80 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDECEDIAQDNQIACMPTFLFM 80 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC--eEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence 345 56899998865 47899999999999999999999999998754 6677665 7899999999999999999
Q ss_pred ecCCcc-eecCCcchhHHHHHHHhhc
Q psy160 164 RHRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+.. ++.|. + .++|.+|++++
T Consensus 81 ~~G~~v~~~~G~-~-~~~l~~~i~k~ 104 (105)
T 3zzx_A 81 KNGQKLDSLSGA-N-YDKLLELVEKN 104 (105)
T ss_dssp ETTEEEEEEESC-C-HHHHHHHHHHH
T ss_pred ECCEEEEEEeCc-C-HHHHHHHHHhc
Confidence 999844 57784 4 44899999875
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=126.08 Aligned_cols=93 Identities=17% Similarity=0.391 Sum_probs=76.0
Q ss_pred EccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
..+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. ++.|+++ .+++++++|+|+++||+++|++
T Consensus 5 i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 5 VKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp CCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred eCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC--CeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 3467899997753 6799999999999999999999999999886 5788888 6889999999999999999999
Q ss_pred CeEEE-eecCccccccchhhhhhhc
Q psy160 271 GNPLI-FEGENKILKGTYIGTYIST 294 (346)
Q Consensus 271 g~~~~-y~g~~~~~~~~~~~~~i~~ 294 (346)
|+.+. +.| .+.+ . +..+++.
T Consensus 83 G~~v~~~~G-~~~~--~-l~~~i~k 103 (105)
T 3zzx_A 83 GQKLDSLSG-ANYD--K-LLELVEK 103 (105)
T ss_dssp TEEEEEEES-CCHH--H-HHHHHHH
T ss_pred CEEEEEEeC-cCHH--H-HHHHHHh
Confidence 98765 556 4322 2 5555543
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=123.51 Aligned_cols=101 Identities=12% Similarity=0.220 Sum_probs=87.0
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
++.+..+++++|++.+. +++++|+||++||++|+.+.|.|.++++.+.. .++.++.+| ++.++++|+|.++||+
T Consensus 4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~ 82 (111)
T 3uvt_A 4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL 82 (111)
T ss_dssp -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence 35789999999999998 78999999999999999999999999998742 357777776 6789999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|++|+ ...|.|..+.+ +|.+|+.++
T Consensus 83 ~~~~~g~~~~~~~g~~~~~-~l~~~l~~~ 110 (111)
T 3uvt_A 83 LLFRGGKKVSEHSGGRDLD-SLHRFVLSQ 110 (111)
T ss_dssp EEEETTEEEEEECSCCSHH-HHHHHHHHH
T ss_pred EEEeCCcEEEeccCCcCHH-HHHHHHHhc
Confidence 9999888 45689988744 899999864
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=153.13 Aligned_cols=179 Identities=11% Similarity=0.163 Sum_probs=122.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcc--cCCeEEEcC-----ChHHHHhcCCCCCCeEEEEeCC----ce-eeecCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQ--YGIDMVKIS-----DTEAAAKYNIINLPSLVYFRKQ----VP-LLYDGDLF 68 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~-----~~~~c~~~~i~~~Ptl~~f~~~----~~-~~y~G~~~ 68 (346)
|+|||+||++|+++.|.|+++++.+.. .++.++.+| +.++|++|+|+++||+++|.+| .. ..+.|..+
T Consensus 35 V~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~ 114 (519)
T 3t58_A 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGAN 114 (519)
T ss_dssp EEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCC
Confidence 689999999999999999999999854 356666654 4799999999999999999963 22 34566655
Q ss_pred CHHHHHHHHhccCC------ccccCceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcE
Q psy160 69 DEEKILTWLTSQDV------FEIKNEIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDIT 139 (346)
Q Consensus 69 ~~~~i~~~i~~~~~------p~~~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~ 139 (346)
. +.+.+++.+... |.....+..++.++++.++..+ ++.++.|...... ...+++..+. ..++.
T Consensus 115 ~-~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~s~-------~~~~~~ldl~~~~~v~ 186 (519)
T 3t58_A 115 V-QTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSY-------LGREVTLDLSQYHAVA 186 (519)
T ss_dssp H-HHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTTCC-------HHHHHHHHTTTCTTEE
T ss_pred H-HHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCchH-------HHHHHHHHhhccCCee
Confidence 4 577777754322 1112246677889998888654 4567777765421 3344444442 22355
Q ss_pred EEEeC--ChhhHHhhCCCCcceEEEEec-CCcceecCCcchhHHHHHHHhh
Q psy160 140 FVKMA--DPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 140 ~~~~~--~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+..+. +..++++|||+.+|+++++.. |+...+.........+..++++
T Consensus 187 v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~~~~v~~~~r~~~~~~l~~ 237 (519)
T 3t58_A 187 VRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRG 237 (519)
T ss_dssp EEEEETTCHHHHHHHTCCCSSEEEEEETTSCEEECCCSSCSHHHHHHHHTT
T ss_pred EEEecCchHHHHHHcCCCCCCeEEEEeCCCceeecccccccHHHHHHHHHH
Confidence 55443 579999999999999999975 4444444333323356667665
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=129.84 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=92.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC--CcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM--DITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~--~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.+.+..++.++|++.+.++++++|+||++||++|+++.|.|.++++.+.+. ++.++.+| +..++++|+|.++||+
T Consensus 16 ~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 95 (140)
T 2dj1_A 16 ENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI 95 (140)
T ss_dssp ETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEE
T ss_pred CCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeE
Confidence 457899999999999988899999999999999999999999999988543 48888887 6789999999999999
Q ss_pred EEEecCCcceecCCcchhHHHHHHHhhcccc
Q psy160 161 VYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 161 ~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++|++|+...|.|.++.+ .|.+|+.+...+
T Consensus 96 ~~~~~G~~~~~~g~~~~~-~l~~~l~~~~~~ 125 (140)
T 2dj1_A 96 KILKKGQAVDYDGSRTQE-EIVAKVREVSQP 125 (140)
T ss_dssp EEEETTEEEECCSCCCHH-HHHHHHHHHHSS
T ss_pred EEEECCcEEEcCCCCCHH-HHHHHHHHhcCC
Confidence 999989877799988844 899999987654
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=121.28 Aligned_cols=100 Identities=18% Similarity=0.359 Sum_probs=86.8
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
..+.+++.++|++.+ .++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+| ++.++++|+|.++||+++
T Consensus 4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 82 (111)
T 3gnj_A 4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLFQRFSLKGVPQILY 82 (111)
T ss_dssp CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence 368899999999999 7789999999999999999999999999999864 37777665 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|..+.+ ++.+|+.+.
T Consensus 83 ~~~g~~~~~~~g~~~~~-~l~~~l~~~ 108 (111)
T 3gnj_A 83 FKDGEYKGKMAGDVEDD-EVEQMIADV 108 (111)
T ss_dssp EETTEEEEEEESSCCHH-HHHHHHHHH
T ss_pred EECCEEEEEEeccCCHH-HHHHHHHHH
Confidence 998884 4688988744 899998765
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=120.95 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=87.8
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+..++.++|++.+.++++++|+||++||++|+.+.|.+.++++.+.+ ++.++.++ ++.++++|+|.++||+++
T Consensus 3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 81 (109)
T 3tco_A 3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQKIADKYSVLNIPTTLI 81 (109)
T ss_dssp CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCHHHHHhcCcccCCEEEE
Confidence 34788999999999999999999999999999999999999999999864 36666664 778999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+ ...+.|..+.+ ++.+++.+.
T Consensus 82 ~~~g~~~~~~~g~~~~~-~l~~~l~~~ 107 (109)
T 3tco_A 82 FVNGQLVDSLVGAVDED-TLESTVNKY 107 (109)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHH
T ss_pred EcCCcEEEeeeccCCHH-HHHHHHHHH
Confidence 98887 45588988744 899998764
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-17 Score=126.00 Aligned_cols=103 Identities=12% Similarity=0.244 Sum_probs=88.2
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+.+++.++|+++++. .++|+||++||++|+++.|.|.++++.+.+.++.++.+| +..++++|+|.++||+++
T Consensus 6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 83 (126)
T 1x5e_A 6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYH 83 (126)
T ss_dssp CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEE
Confidence 347899999999987754 399999999999999999999999998865457777765 778999999999999999
Q ss_pred EecCCcceecCCcchhHHHHHHHhhcccc
Q psy160 163 FRHRFPSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 163 ~~~g~~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
|++|+...|.|..+.+ +|.+|+.+...+
T Consensus 84 ~~~G~~~~~~G~~~~~-~l~~~l~~~~~~ 111 (126)
T 1x5e_A 84 CKDGEFRRYQGPRTKK-DFINFISDKEWK 111 (126)
T ss_dssp EETTEEEECCSCCCHH-HHHHHHHTCGGG
T ss_pred EeCCeEEEeecCCCHH-HHHHHHHHHhhc
Confidence 9999877899988744 899999887643
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=139.64 Aligned_cols=141 Identities=9% Similarity=0.120 Sum_probs=112.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEE--CCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC--------ChhhHHhhC
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFY--ETDHKDSVKVLERLEKIDGETDN--MDITFVKMA--------DPRYARKWG 153 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~--~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~--------~~~l~~~~~ 153 (346)
+..+..+++++|++++.++++++|.|| ||||+ +.|.|+++|+.+.+ .++.|+.+| ++++|++|+
T Consensus 15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 447889999999998888899999999 99999 99999999999843 357888765 478999999
Q ss_pred CC--CcceEEEEecCC---ccee--cCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHH
Q psy160 154 VT--KLPAVVYFRHRF---PSIY--RGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQ 226 (346)
Q Consensus 154 i~--~~Ptl~~~~~g~---~~~y--~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~ 226 (346)
|+ ++||+++|+ |+ +..| .|.++.+ +|.+|+.+......-..-.-..++.++.+ |.+.||..|..
T Consensus 91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~-~L~~fi~~~~~~~~~~~g~i~~~d~l~~~-------f~~~~~~~~~~ 161 (248)
T 2c0g_A 91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLD-NLKAFVSANTPLYIGRDGCIKEFNEVLKN-------YANIPDAEQLK 161 (248)
T ss_dssp CCTTSCCEEEEES-SSSSSEEECCTTSCCCHH-HHHHHHHHHSSCCCCCTTCCHHHHHHHTT-------GGGSCHHHHHH
T ss_pred CCcCCCCeEEEEe-CCcCcceeecccCCCCHH-HHHHHHHHhhccccCCCCchHHHHHHHHH-------HhcccchhHHH
Confidence 99 999999999 87 4678 8998854 99999998864211111122556665443 67789999999
Q ss_pred HHHHHHHHHhhcC
Q psy160 227 ILEGLEKVDDECD 239 (346)
Q Consensus 227 ~~~~~~~la~~~~ 239 (346)
+.+.+++++..+.
T Consensus 162 ~~~~~~~~~~~l~ 174 (248)
T 2c0g_A 162 LIEKLQAKQEQLT 174 (248)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcc
Confidence 9999999888774
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-17 Score=123.02 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++.+ ++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+| ++.++++|+|.++||+++|+
T Consensus 2 ~v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (112)
T 2voc_A 2 AIVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79 (112)
T ss_dssp CCEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTCCSHHHHTTCCSBSEEEEEE
T ss_pred CeEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence 36789999999998 888999999999999999999999999998854 37777665 67899999999999999998
Q ss_pred cCC-cceecCCcchhHHHHHHHhhccccC
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLITQKTED 192 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~~~~~~ 192 (346)
+|+ ...+.|..+.+ ++.+|+.+...++
T Consensus 80 ~G~~~~~~~G~~~~~-~l~~~l~~~~~~~ 107 (112)
T 2voc_A 80 DGEVVETSVGFKPKE-ALQELVNKHLLEH 107 (112)
T ss_dssp TTEEEEEEESCCCHH-HHHHHHHTTSCSC
T ss_pred CCEEEEEEeCCCCHH-HHHHHHHHHHHhh
Confidence 888 45688988844 8999999887653
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=121.80 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=84.6
Q ss_pred cCceeecCHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
+......+.++|++++. ++++++|.||++||++|+.+.|.|+++++.+.+ +.++.+| ++.++++|+|.++||+
T Consensus 11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~~~l~~~~~v~~~Pt~ 88 (116)
T 3qfa_C 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKSMPTF 88 (116)
T ss_dssp -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCccccEE
Confidence 34677889999999998 789999999999999999999999999998865 6777665 7789999999999999
Q ss_pred EEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 161 VYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 161 ~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|++|+. ..+.|. + .+.|.+++.+.
T Consensus 89 ~~~~~G~~~~~~~G~-~-~~~l~~~l~~~ 115 (116)
T 3qfa_C 89 QFFKKGQKVGEFSGA-N-KEKLEATINEL 115 (116)
T ss_dssp EEESSSSEEEEEESC-C-HHHHHHHHHHH
T ss_pred EEEeCCeEEEEEcCC-C-HHHHHHHHHHh
Confidence 99998884 458888 5 44899988753
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=125.22 Aligned_cols=105 Identities=16% Similarity=0.377 Sum_probs=91.2
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.+.+.+++.++|++.+.++++++|+||++||++|+++.|.+.++++.+.. .++.++.+| ++.++++|+|.++||+
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 85 (120)
T 1mek_A 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI 85 (120)
T ss_dssp ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence 45789999999999999999999999999999999999999999998853 347777766 5689999999999999
Q ss_pred EEEecCCc---ceecCCcchhHHHHHHHhhcccc
Q psy160 161 VYFRHRFP---SIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 161 ~~~~~g~~---~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++|++|+. ..|.|..+.+ .+.+|+.+...+
T Consensus 86 ~~~~~g~~~~~~~~~g~~~~~-~l~~~l~~~~~~ 118 (120)
T 1mek_A 86 KFFRNGDTASPKEYTAGREAD-DIVNWLKKRTGP 118 (120)
T ss_dssp EEEESSCSSSCEECCCCSSHH-HHHHHHHTTSCC
T ss_pred EEEeCCCcCCcccccCccCHH-HHHHHHHhccCC
Confidence 99998874 5788988744 899999987655
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-17 Score=128.05 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=71.0
Q ss_pred EEEc-cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 194 IELI-TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l-~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+..+ +.++|++.+. ++++++|.|||+||+||+.+.|.++++|+++.+ .+.|+++ ++++++++|+|++.||+++
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~~e~a~~y~V~siPT~~f 101 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEVPDFNTMYELYDPVSVMF 101 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTTTTCCSSEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence 3344 5689988653 678999999999999999999999999999986 6889998 7899999999999999999
Q ss_pred EeCCeEE
Q psy160 268 FRNGNPL 274 (346)
Q Consensus 268 ~~~g~~~ 274 (346)
|++|+.+
T Consensus 102 Fk~G~~v 108 (160)
T 2av4_A 102 FYRNKHM 108 (160)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999986
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=126.86 Aligned_cols=101 Identities=12% Similarity=0.262 Sum_probs=84.1
Q ss_pred cCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcC----cCceEEEEE---cChhhhhhCCCccc
Q psy160 191 EDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECD----IYGIHMVKI---QDPQLAKRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~----~~~i~~~~i---~~~~~~~~~~i~~~ 262 (346)
++.+..++.++|++.+. ++++++|.||++||++|+.+.|.|+++|+.+. ...+.++.+ .+++++++|+|+++
T Consensus 14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~ 93 (127)
T 3h79_A 14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF 93 (127)
T ss_dssp CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence 45778999999999874 68999999999999999999999999998753 125899998 67899999999999
Q ss_pred cEEEEEeCCeE---EEeecCccccccchhhhhhhc
Q psy160 263 PALVYFRNGNP---LIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~~~g~~---~~y~g~~~~~~~~~~~~~i~~ 294 (346)
||+++|++|+. ..|.|.++.+. +..|++.
T Consensus 94 Pt~~~~~~g~~~~~~~~~G~~~~~~---l~~~i~~ 125 (127)
T 3h79_A 94 PTMRYYTRIDKQEPFEYSGQRYLSL---VDSFVFQ 125 (127)
T ss_dssp SEEEEECSSCSSSCEECCSCCCHHH---HHHHHHH
T ss_pred CEEEEEeCCCCCCceEecCCccHHH---HHHHHHh
Confidence 99999998753 68999886433 5555543
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=123.95 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=87.2
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCC--ChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETD--HKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.+..+|+++|++.+.++++++|.|+++| |++|+.+.|.++++++++.+..+.|+++| ++.++.+|||++.||+++
T Consensus 18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlil 97 (140)
T 2qgv_A 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLV 97 (140)
T ss_dssp TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEE
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 4568999999999987789999999999 99999999999999999854337888877 889999999999999999
Q ss_pred EecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+.+ +..|..... .+.+++.+..
T Consensus 98 Fk~G~~v~~~~G~~~k~-~l~~~i~~~l 124 (140)
T 2qgv_A 98 FTGGNYRGVLNGIHPWA-ELINLMRGLV 124 (140)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred EECCEEEEEEecCCCHH-HHHHHHHHHh
Confidence 9999954 477887744 8999988654
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=117.97 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=83.9
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
+.++++++|++.+.++++++|.||++||++|+.+.|.++++++.+.+. +.++.+| ++.++++|+|.++||+++|++
T Consensus 2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (105)
T 1nsw_A 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDENPETTSQFGIMSIPTLILFKG 80 (105)
T ss_dssp CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence 678899999988888899999999999999999999999999988543 6666665 678999999999999999988
Q ss_pred CC-cceecCCcchhHHHHHHHhhc
Q psy160 166 RF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 166 g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|+ ...+.|..+.+ .+.+++.+.
T Consensus 81 G~~~~~~~G~~~~~-~l~~~l~~~ 103 (105)
T 1nsw_A 81 GRPVKQLIGYQPKE-QLEAQLADV 103 (105)
T ss_dssp TEEEEEEESCCCHH-HHHHHTTTT
T ss_pred CeEEEEEecCCCHH-HHHHHHHHH
Confidence 88 44588888744 899888764
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=117.91 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=84.9
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++.+ ++++++|.||++||++|+.+.|.++++++.+.+. +.++.++ ++.++++|+|+++||+++|+
T Consensus 4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 81 (106)
T 3die_A 4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENPSTAAKYEVMSIPTLIVFK 81 (106)
T ss_dssp CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCcCHHHHHhCCCcccCEEEEEe
Confidence 68889999999999 8899999999999999999999999999998653 6666655 77899999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHhhc
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+ ...+.|..+.+ ++.+++.+.
T Consensus 82 ~G~~~~~~~g~~~~~-~l~~~l~~~ 105 (106)
T 3die_A 82 DGQPVDKVVGFQPKE-NLAEVLDKH 105 (106)
T ss_dssp TTEEEEEEESCCCHH-HHHHHHHTT
T ss_pred CCeEEEEEeCCCCHH-HHHHHHHHh
Confidence 887 44688988744 899998764
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=124.14 Aligned_cols=88 Identities=9% Similarity=0.167 Sum_probs=77.2
Q ss_pred cEEEccHHHHHHHHhccc-eEEEEEEcCCC--hhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 193 RIELITRVMLETMVEETQ-YLAVYFYKLNC--NICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~-~~lv~F~~~~c--~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
....++.++|++.+.+.+ +++|+|||+|| ++|+.+.|.++++++++.+ ++.++++ .+++++.+|+|+++||++
T Consensus 16 g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~~~la~~ygV~siPTli 94 (137)
T 2qsi_A 16 APTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAERGLMARFGVAVCPSLA 94 (137)
T ss_dssp -CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGHHHHHHHHTCCSSSEEE
T ss_pred CCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 445789999999776555 99999999999 9999999999999999986 8999999 678999999999999999
Q ss_pred EEeCCeEEE-eecCcc
Q psy160 267 YFRNGNPLI-FEGENK 281 (346)
Q Consensus 267 ~~~~g~~~~-y~g~~~ 281 (346)
+|++|+.+. ..|..+
T Consensus 95 lFkdG~~v~~~vG~~~ 110 (137)
T 2qsi_A 95 VVQPERTLGVIAKIQD 110 (137)
T ss_dssp EEECCEEEEEEESCCC
T ss_pred EEECCEEEEEEeCCCC
Confidence 999998765 456665
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=117.33 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=87.0
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++.++|++++.++++++|+||++||++|+.+.|.+.++++.+.+ ++.++.+| ++.++++|+|.++||+++|+
T Consensus 2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 80 (109)
T 2yzu_A 2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDENPKTAMRYRVMSIPTVILFK 80 (109)
T ss_dssp CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence 578899999999998899999999999999999999999999998864 37777765 77899999999999999998
Q ss_pred cCCc-ceecCCcchhHHHHHHHhhccc
Q psy160 165 HRFP-SIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 165 ~g~~-~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
+|+. ..+.|..+.+ ++.+|+.+...
T Consensus 81 ~g~~~~~~~g~~~~~-~l~~~l~~~l~ 106 (109)
T 2yzu_A 81 DGQPVEVLVGAQPKR-NYQAKIEKHLP 106 (109)
T ss_dssp TTEEEEEEESCCCHH-HHHHHHHTTC-
T ss_pred CCcEeeeEeCCCCHH-HHHHHHHHHhh
Confidence 8884 4588988744 89999987643
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=116.44 Aligned_cols=98 Identities=20% Similarity=0.389 Sum_probs=84.4
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
|.+++.++|++.+.++++++|+||++||++|+.+.|.++++++.+.+ +.++.++ ++.++++|+|.++||+++|++
T Consensus 1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 78 (104)
T 2e0q_A 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78 (104)
T ss_dssp CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence 46789999999998889999999999999999999999999998865 6666655 778999999999999999988
Q ss_pred CCc-ceecCCcchhHHHHHHHhhcc
Q psy160 166 RFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 166 g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|+. ..+.|..+.+ ++.+|+.+..
T Consensus 79 g~~~~~~~g~~~~~-~l~~~l~~~l 102 (104)
T 2e0q_A 79 GEPVDEIIGAVPRE-EIEIRIKNLL 102 (104)
T ss_dssp TEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred CeEhhhccCCCCHH-HHHHHHHHHh
Confidence 884 4688987744 8999987653
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=125.02 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=78.9
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCC--ChhhHHHHHHHHHHHhhcCcCc-eEEEEE---cChhhhhhCCCccccEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLN--CNICDQILEGLEKVDDECDIYG-IHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--c~~c~~~~~~~~~la~~~~~~~-i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
.+..++.++|++.+.++++++|+||++| |++|+.+.|.++++++++.+ + +.|+++ .+++++.+|+|+++||++
T Consensus 18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g-~~v~~~KVdvDe~~~lA~~ygV~sIPTli 96 (140)
T 2qgv_A 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD-YTWQVAIADLEQSEAIGDRFGAFRFPATL 96 (140)
T ss_dssp TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT-SCCEEEECCHHHHHHHHHHHTCCSSSEEE
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC-CeEEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 4568899999998878889999999999 99999999999999999987 7 999999 688999999999999999
Q ss_pred EEeCCeEEE-eecCcc
Q psy160 267 YFRNGNPLI-FEGENK 281 (346)
Q Consensus 267 ~~~~g~~~~-y~g~~~ 281 (346)
+|++|+.+. ..|..+
T Consensus 97 lFk~G~~v~~~~G~~~ 112 (140)
T 2qgv_A 97 VFTGGNYRGVLNGIHP 112 (140)
T ss_dssp EEETTEEEEEEESCCC
T ss_pred EEECCEEEEEEecCCC
Confidence 999998764 456654
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=124.38 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=86.9
Q ss_pred CceeecCHHHHH-HHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLD-KLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~-~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
..+.+++.++|+ .++.++++++|+||++||++|+.+.|.|.++++.+.+ ++.++.+| ++.++++|+|.++||+++
T Consensus 6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 84 (140)
T 3hz4_A 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATNPWTAEKYGVQGTPTFKF 84 (140)
T ss_dssp TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence 479999999999 5566778999999999999999999999999999865 37777665 789999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+. ..|.|..+.+ .|.+|+.+..
T Consensus 85 ~~~G~~~~~~~G~~~~~-~l~~~l~~~l 111 (140)
T 3hz4_A 85 FCHGRPVWEQVGQIYPS-ILKNAVRDML 111 (140)
T ss_dssp EETTEEEEEEESSCCHH-HHHHHHHHHH
T ss_pred EeCCcEEEEEcCCCCHH-HHHHHHHHHh
Confidence 999884 4688988744 8999988754
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=125.85 Aligned_cols=103 Identities=11% Similarity=0.204 Sum_probs=88.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+..+.+++.++|++.+.++++++|+||++||++|+.+.|.|+++++.+.+. +.|+.+| ++.++++|+|+++||+++
T Consensus 46 ~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 124 (155)
T 2ppt_A 46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQAHPAVAGRHRIQGIPAFIL 124 (155)
T ss_dssp CSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred CCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence 346889999999999877889999999999999999999999999998643 7777776 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhccc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|++|+. ..+.|..+.+ +|.+|+.+...
T Consensus 125 ~~~G~~~~~~~G~~~~~-~l~~~l~~~l~ 152 (155)
T 2ppt_A 125 FHKGRELARAAGARPAS-ELVGFVRGKLG 152 (155)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHHHC
T ss_pred EeCCeEEEEecCCCCHH-HHHHHHHHHhc
Confidence 998884 4588988744 89999987643
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=117.17 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=84.8
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++.++|++.+ .++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.++ ++.++++|+|.++||+++
T Consensus 2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 80 (107)
T 2i4a_A 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETPNAYQVRSIPTLML 80 (107)
T ss_dssp CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCHHHHHTTCCSSSEEEE
T ss_pred CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCCHHHHHhcCCCccCEEEE
Confidence 468899999998776 5678999999999999999999999999998854 47777765 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|..+.+ .+.+|+.+.
T Consensus 81 ~~~G~~~~~~~G~~~~~-~l~~~l~~~ 106 (107)
T 2i4a_A 81 VRDGKVIDKKVGALPKS-QLKAWVESA 106 (107)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHT
T ss_pred EeCCEEEEEecCCCCHH-HHHHHHHhc
Confidence 988884 4588988744 899998764
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=117.60 Aligned_cols=89 Identities=21% Similarity=0.482 Sum_probs=79.6
Q ss_pred CcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 192 DRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
..+..++.++|++.+ +++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||+++
T Consensus 4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 82 (111)
T 3gnj_A 4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLFQRFSLKGVPQILY 82 (111)
T ss_dssp CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence 356788999999987 7889999999999999999999999999999986 6888888 6788999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
|++|+.+ .+.|..+
T Consensus 83 ~~~g~~~~~~~g~~~ 97 (111)
T 3gnj_A 83 FKDGEYKGKMAGDVE 97 (111)
T ss_dssp EETTEEEEEEESSCC
T ss_pred EECCEEEEEEeccCC
Confidence 9999865 5788765
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=122.12 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=85.0
Q ss_pred eeecCHHHHHHHHhcCC-cEEEEEECCCC--hhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNRRMLDKLLEENE-FVTVFFYETDH--KDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~-~~lv~F~~~~C--~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
..++|+++|++.+.+++ +++|.||++|| ++|+.+.|.++++++++.+ ++.++++| ++.++.+|||++.||+++
T Consensus 17 ~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~~~la~~ygV~siPTlil 95 (137)
T 2qsi_A 17 PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAERGLMARFGVAVCPSLAV 95 (137)
T ss_dssp CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGHHHHHHHHTCCSSSEEEE
T ss_pred CcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 44889999999987776 99999999999 9999999999999999854 37888776 788999999999999999
Q ss_pred EecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+.+ +..|..... .+.+++.+..
T Consensus 96 FkdG~~v~~~vG~~~k~-~l~~~l~~~l 122 (137)
T 2qsi_A 96 VQPERTLGVIAKIQDWS-SYLAQIGAML 122 (137)
T ss_dssp EECCEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCHH-HHHHHHHHHh
Confidence 9999954 477887744 7888887643
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=117.71 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=84.4
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.|.+++.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+ ++.++.++ ++.++++|+|.++||+++
T Consensus 2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 80 (108)
T 2trx_A 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80 (108)
T ss_dssp TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence 468899999999665 5678999999999999999999999999998854 37777765 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|..+.+ ++.+|+.+.
T Consensus 81 ~~~G~~~~~~~G~~~~~-~l~~~l~~~ 106 (108)
T 2trx_A 81 FKNGEVAATKVGALSKG-QLKEFLDAN 106 (108)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHH
T ss_pred EeCCEEEEEEecCCCHH-HHHHHHHHh
Confidence 988884 4578888744 899988764
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-16 Score=117.20 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=83.0
Q ss_pred CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 87 NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
......+.++|++.+.++++++|.||++||++|+.+.|.++++++.+.+ +.++.++ ++.++++|+|.++||+++|
T Consensus 7 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 84 (109)
T 3f3q_A 7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDELGDVAQKNEVSAMPTLLLF 84 (109)
T ss_dssp CCEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred cccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence 4566778999999999999999999999999999999999999998865 5666554 7789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+. ..+.|. +. ++|.+++.+.
T Consensus 85 ~~G~~~~~~~G~-~~-~~l~~~i~~~ 108 (109)
T 3f3q_A 85 KNGKEVAKVVGA-NP-AAIKQAIAAN 108 (109)
T ss_dssp ETTEEEEEEESS-CH-HHHHHHHHHH
T ss_pred ECCEEEEEEeCC-CH-HHHHHHHHhh
Confidence 98874 457787 43 4888888753
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-16 Score=121.57 Aligned_cols=102 Identities=14% Similarity=0.224 Sum_probs=87.6
Q ss_pred CceeecCHHHHHHHHh------------cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHh
Q psy160 87 NEIEEVNRRMLDKLLE------------ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARK 151 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~------------~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~ 151 (346)
..+.++++++|++.+. ++++++|.||++||++|+.+.|.|.++++.+.+ ++.++.++ +..++++
T Consensus 9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~ 87 (136)
T 2l5l_A 9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQELAGA 87 (136)
T ss_dssp TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHH
Confidence 4788999999999886 357899999999999999999999999998854 37777665 6789999
Q ss_pred hCCCCcceEEEE-ecCCcceecCCcchhHHHHHHHhhccc
Q psy160 152 WGVTKLPAVVYF-RHRFPSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 152 ~~i~~~Ptl~~~-~~g~~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|+|.++||+++| ++|+...+.|..+.+ .|.+|+.+...
T Consensus 88 ~~v~~~Pt~~~~~~~G~~~~~~G~~~~~-~l~~~l~~~~~ 126 (136)
T 2l5l_A 88 FGIRSIPSILFIPMEGKPEMAQGAMPKA-SFKKAIDEFLL 126 (136)
T ss_dssp TTCCSSCEEEEECSSSCCEEEESCCCHH-HHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCCcEEEEeCCCCHH-HHHHHHHHHhh
Confidence 999999999999 788877899988844 89999987654
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=123.03 Aligned_cols=103 Identities=14% Similarity=0.272 Sum_probs=87.5
Q ss_pred cCceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC---CCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 86 KNEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDN---MDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~---~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
.+.+..++.++|++.+ .++++++|+||++||++|+.+.|.|.++++.+.. .++.++.+| ++.++++|+|.++|
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P 85 (133)
T 1x5d_A 6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP 85 (133)
T ss_dssp CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSS
T ss_pred CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeC
Confidence 3478999999999976 5668999999999999999999999999998851 347788776 67899999999999
Q ss_pred eEEEEecCC-cceecCCcchhHHHHHHHhhcc
Q psy160 159 AVVYFRHRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 159 tl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|+++|.+|+ ...|.|.++.+ ++.+|+.+..
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~-~l~~~l~~~~ 116 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRS-DIVSRALDLF 116 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHH-HHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHH-HHHHHHHHHh
Confidence 999999887 55689988744 8999988754
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=121.08 Aligned_cols=107 Identities=19% Similarity=0.359 Sum_probs=87.4
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
++.+..++.++|+++++. .++|.||++||++|+.+.|.+.++++.+.+.++.++.+ .+.+++++|+|+++||+++
T Consensus 6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 83 (126)
T 1x5e_A 6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYH 83 (126)
T ss_dssp CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEE
Confidence 456788999999987754 38999999999999999999999999987546888888 6788999999999999999
Q ss_pred EeCCeEEEeecCccccccchhhhhhhccCCCCCCc
Q psy160 268 FRNGNPLIFEGENKILKGTYIGTYISTKAFSLIPF 302 (346)
Q Consensus 268 ~~~g~~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~ 302 (346)
|++|+...|.|.++.+. +..+++....+.+..
T Consensus 84 ~~~G~~~~~~G~~~~~~---l~~~l~~~~~~~~~~ 115 (126)
T 1x5e_A 84 CKDGEFRRYQGPRTKKD---FINFISDKEWKSIEP 115 (126)
T ss_dssp EETTEEEECCSCCCHHH---HHHHHHTCGGGGSCE
T ss_pred EeCCeEEEeecCCCHHH---HHHHHHHHhhccCCC
Confidence 99999878888876333 666666654444433
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=122.34 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=86.6
Q ss_pred cCceeecCHHHHHHHHhc------------CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHH
Q psy160 86 KNEIEEVNRRMLDKLLEE------------NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYAR 150 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~------------~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~ 150 (346)
+..+..++.++|+..+.. +++++|.||++||++|+.+.|.|.++++.+.+ ++.++.++ ++.+++
T Consensus 21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 99 (141)
T 3hxs_A 21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELAR 99 (141)
T ss_dssp --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHH
T ss_pred CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCHHHHH
Confidence 457999999999998875 68999999999999999999999999999864 36776665 778999
Q ss_pred hhCCCCcceEEEE-ecCCcceecCCcchhHHHHHHHhhcc
Q psy160 151 KWGVTKLPAVVYF-RHRFPSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 151 ~~~i~~~Ptl~~~-~~g~~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|+|.++||+++| ++|+...+.|..+.+ .|.+|+.+..
T Consensus 100 ~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~-~l~~~l~~~l 138 (141)
T 3hxs_A 100 DFGIQSIPTIWFVPMKGEPQVNMGALSKE-QLKGYIDKVL 138 (141)
T ss_dssp HTTCCSSSEEEEECSSSCCEEEESCCCHH-HHHHHHHHTT
T ss_pred HcCCCCcCEEEEEeCCCCEEEEeCCCCHH-HHHHHHHHHH
Confidence 9999999999999 467777899988844 8999988754
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-16 Score=118.76 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=83.2
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAV 160 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl 160 (346)
.+..++.+++++.+.++++++|+||++||++|+.+.|.+.++++.+. ..+.++.++ ...++++|+|.++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~ 91 (118)
T 1zma_A 13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF 91 (118)
T ss_dssp TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred hhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeE
Confidence 67889999999999888999999999999999999999999998864 347788665 2478899999999999
Q ss_pred EEEecCCc-ceecCCcchhHHHHHHHh
Q psy160 161 VYFRHRFP-SIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 161 ~~~~~g~~-~~y~g~~~~~~~i~~fi~ 186 (346)
++|++|+. ..+.|..+.+ +|.+|+.
T Consensus 92 ~~~~~G~~~~~~~G~~~~~-~l~~~l~ 117 (118)
T 1zma_A 92 VHITDGQINVRCDSSMSAQ-EIKDFAG 117 (118)
T ss_dssp EEEETTEEEEECCTTCCHH-HHHHHHT
T ss_pred EEEECCEEEEEecCCCCHH-HHHHHhh
Confidence 99998874 4688888744 8998875
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=123.72 Aligned_cols=103 Identities=17% Similarity=0.364 Sum_probs=89.4
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
...+..++.++|++.+.++++++|+||++||++|+.+.|.|+++++.+.. ++.++.+| ++.++++|+|.++||+++
T Consensus 37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 115 (148)
T 3p2a_A 37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRSIPTIML 115 (148)
T ss_dssp CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCHHHHHHCCCCccCEEEE
Confidence 45789999999999998889999999999999999999999999999854 37777765 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhccc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|++|+. ..|.|..+.+ .|.+|+.+...
T Consensus 116 ~~~G~~~~~~~G~~~~~-~l~~~l~~~l~ 143 (148)
T 3p2a_A 116 YRNGKMIDMLNGAVPKA-PFDNWLDEQLS 143 (148)
T ss_dssp EETTEEEEEESSCCCHH-HHHHHHHHHHH
T ss_pred EECCeEEEEEeCCCCHH-HHHHHHHHHhc
Confidence 998884 4588988844 89999987643
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=123.96 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=80.8
Q ss_pred eeecC-HHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVN-RRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~-~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+..++ .++|++.+. ++++++|.|+|+||++|+.+.|.++++|+++.+. +.|+++| .++++.+|+|.+.||+++
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDVDe~~e~a~~y~V~siPT~~f 101 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF-CVIYLVDITEVPDFNTMYELYDPVSVMF 101 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTCCTTTTTTTCCSSEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence 55564 689988774 4679999999999999999999999999998542 6666665 789999999999999999
Q ss_pred EecCCcc----------eecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFPS----------IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~~----------~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+.+ +..|...+.++|.++++..
T Consensus 102 Fk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 102 FYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp EETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred EECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 9999876 5678765344788887654
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=116.98 Aligned_cols=99 Identities=14% Similarity=0.279 Sum_probs=80.5
Q ss_pred eeecCH-HHHHHHHhc---CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 89 IEEVNR-RMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 89 v~~l~~-~~~~~~~~~---~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
|.+++. ++|++.+.+ +++++|.||++||++|+.+.|.++++++.+...++.++.+| ++.++++|+|.++||++
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 81 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI 81 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence 567776 999999976 78999999999999999999999999998643457787776 77899999999999999
Q ss_pred EEecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 162 YFRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 162 ~~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|++|+. ..+.|... . +|.+++.+..
T Consensus 82 ~~~~G~~~~~~~G~~~-~-~l~~~l~~~~ 108 (112)
T 3d6i_A 82 IIHKGTILKELSGADP-K-EYVSLLEDCK 108 (112)
T ss_dssp EEETTEEEEEECSCCH-H-HHHHHHHHHH
T ss_pred EEECCEEEEEecCCCH-H-HHHHHHHHHH
Confidence 9998884 45778743 4 6888887643
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=115.68 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=82.9
Q ss_pred ceeec-CHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.+.++ +.++|++.+.. +++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.++++|+|.++||
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt 81 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchHHHHHHcCCCcccE
Confidence 46667 67999999876 78999999999999999999999999998864 47777765 678999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++|++|+. ..+.|. + .+++.+++.+.
T Consensus 82 ~~~~~~G~~~~~~~G~-~-~~~l~~~l~~~ 109 (112)
T 1ep7_A 82 FHVYKDGVKADDLVGA-S-QDKLKALVAKH 109 (112)
T ss_dssp EEEEETTEEEEEEESC-C-HHHHHHHHHHH
T ss_pred EEEEECCeEEEEEcCC-C-HHHHHHHHHHH
Confidence 999998884 457887 5 44898888764
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=121.83 Aligned_cols=102 Identities=13% Similarity=0.269 Sum_probs=86.6
Q ss_pred cCceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+.+.+++.++|++.+ .++++++|+||++||++|+.+.|.|.++++.+.+. +.++.+| +..++++|+|.++||++
T Consensus 16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 94 (130)
T 2dml_A 16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQSLGGQYGVQGFPTIK 94 (130)
T ss_dssp TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence 4578999999999865 56789999999999999999999999999988653 7777665 77899999999999999
Q ss_pred EEecCC--cceecCCcchhHHHHHHHhhcc
Q psy160 162 YFRHRF--PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 162 ~~~~g~--~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|.+|. ...|.|..+.+ ++.+|+.+..
T Consensus 95 ~~~~~~~~~~~~~G~~~~~-~l~~~l~~~l 123 (130)
T 2dml_A 95 IFGANKNKPEDYQGGRTGE-AIVDAALSAL 123 (130)
T ss_dssp EESSCTTSCEECCSCCSHH-HHHHHHHHHH
T ss_pred EEeCCCCeEEEeecCCCHH-HHHHHHHHHH
Confidence 998765 56789988744 8999988754
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=125.59 Aligned_cols=104 Identities=9% Similarity=0.044 Sum_probs=85.6
Q ss_pred CceeecCHHHHHHHHhcC--CcEEEEEEC-------CCChhHHHHHHHHHHHHhhccC----CCcEEEEeC---ChhhHH
Q psy160 87 NEIEEVNRRMLDKLLEEN--EFVTVFFYE-------TDHKDSVKVLERLEKIDGETDN----MDITFVKMA---DPRYAR 150 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~--~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~----~~i~~~~~~---~~~l~~ 150 (346)
+.|.+||+++|++++... .+++|+|+| +||++|+.+.|+|+++|+++.. .++.|+++| ++++++
T Consensus 18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~ 97 (178)
T 3ga4_A 18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVK 97 (178)
T ss_dssp TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHH
T ss_pred CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHH
Confidence 378999999999988643 468999999 4999999999999999999841 248888876 889999
Q ss_pred hhCCCCcceEEEEecCC--c-----------cee---cC-CcchhHHHHHHHhhcccc
Q psy160 151 KWGVTKLPAVVYFRHRF--P-----------SIY---RG-DLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~--~-----------~~y---~g-~~~~~~~i~~fi~~~~~~ 191 (346)
+|||+++|||++|++|. . ..| .| .++.+ .|.+|+.+....
T Consensus 98 ~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae-~la~fi~~~t~~ 154 (178)
T 3ga4_A 98 DLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTL-QFGDFLAKILNI 154 (178)
T ss_dssp HTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHH-HHHHHHHHHHTC
T ss_pred HcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHH-HHHHHHHHhcCC
Confidence 99999999999999875 2 345 24 56644 899999987764
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=118.86 Aligned_cols=101 Identities=11% Similarity=0.154 Sum_probs=83.9
Q ss_pred CceeecCHHHHHH-HHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDK-LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++.++|++ ++.++++++|.||++||++|+.+.|.|.++++.+.+ ++.++.+| ++.++++|+|.++||+++
T Consensus 3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (122)
T 3aps_A 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKL 81 (122)
T ss_dssp CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCHHHHHHcCCCccceEEE
Confidence 4688999999965 556778999999999999999999999999998864 47777765 778999999999999999
Q ss_pred EecCC-cceecCC----cchhHHHHHHHhhcc
Q psy160 163 FRHRF-PSIYRGD----LSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~-~~~y~g~----~~~~~~i~~fi~~~~ 189 (346)
|.+|. ...+.|. .+ .+.|.+|+.+..
T Consensus 82 ~~~~~~~~~~~g~~~~~~~-~~~l~~~l~~~l 112 (122)
T 3aps_A 82 YQYERAKKSIWEEQINSRD-AKTIAALIYGKL 112 (122)
T ss_dssp EEEEGGGTEEEEEEECCSC-HHHHHHHHHHHH
T ss_pred EeCCCccceeeccccCcCC-HHHHHHHHHHHH
Confidence 97654 5557775 55 448999987754
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=114.16 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=83.0
Q ss_pred ceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+.+++.++|++.+ .++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.++ ++.++++|+|.++||+++|
T Consensus 2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 80 (107)
T 1dby_A 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMVF 80 (107)
T ss_dssp CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCCcCCEEEEE
Confidence 36789999999876 4568999999999999999999999999998854 37777665 6789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+. ..+.|..+.+ ++.+++.+.
T Consensus 81 ~~G~~~~~~~G~~~~~-~l~~~l~~~ 105 (107)
T 1dby_A 81 KGGKKCETIIGAVPKA-TIVQTVEKY 105 (107)
T ss_dssp SSSSEEEEEESCCCHH-HHHHHHHHH
T ss_pred eCCEEEEEEeCCCCHH-HHHHHHHHH
Confidence 88884 4588888744 788888754
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=115.59 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=84.7
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.....++.++|+++++++++++|+||++||++|+.+.|.++++++.+.+ +.++.++ ++.++++|+|.++||+++
T Consensus 8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 85 (112)
T 1syr_A 8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDEVSEVTEKENITSMPTFKV 85 (112)
T ss_dssp -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTTHHHHHHTTCCSSSEEEE
T ss_pred eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence 34778899999999999999999999999999999999999999998754 6666665 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|. + .++|.+++.+.
T Consensus 86 ~~~G~~~~~~~G~-~-~~~l~~~l~~~ 110 (112)
T 1syr_A 86 YKNGSSVDTLLGA-N-DSALKQLIEKY 110 (112)
T ss_dssp EETTEEEEEEESC-C-HHHHHHHHHTT
T ss_pred EECCcEEEEEeCC-C-HHHHHHHHHHh
Confidence 998884 457887 5 45899998764
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=123.35 Aligned_cols=116 Identities=16% Similarity=0.336 Sum_probs=87.2
Q ss_pred ceeecC-HHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEVN-RRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l~-~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+..++ .++|++++.+ +++++|.||++||++|+.+.|.|.++++.+. ++.++.+| ++.++++|+|.++||++
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 90 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPEVSEKYEISSVPTFL 90 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence 567776 7999999988 8899999999999999999999999999874 37777665 67899999999999999
Q ss_pred EEecCCcc-eecCCcchhHHHHHHHhhccc------cCcEEEccHHHHHHHHh
Q psy160 162 YFRHRFPS-IYRGDLSEEEEVLQWLITQKT------EDRIELITRVMLETMVE 207 (346)
Q Consensus 162 ~~~~g~~~-~y~g~~~~~~~i~~fi~~~~~------~~~v~~l~~~~~~~~~~ 207 (346)
+|.+|+.. .+.|. ..+ +|.+++.+... +..+..++.++|+++..
T Consensus 91 ~~~~G~~~~~~~G~-~~~-~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~~~ 141 (153)
T 2wz9_A 91 FFKNSQKIDRLDGA-HAP-ELTKKVQRHASSGSFLPSAKVKVDTDPNSSSVDK 141 (153)
T ss_dssp EEETTEEEEEEESS-CHH-HHHHHHHHHSCTTSSCSCCCCCCC----------
T ss_pred EEECCEEEEEEeCC-CHH-HHHHHHHHHhccccCCCccccccCCCCChhhHHH
Confidence 99988854 46774 434 79999987653 33566778888877644
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=115.49 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=85.4
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+. +.++.++ ++.++++|+|.++||+++
T Consensus 7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPNPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence 368999999999875 56789999999999999999999999999988543 7777665 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+. ..+.|..+.+ .+.+|+.+..
T Consensus 86 ~~~G~~~~~~~g~~~~~-~l~~~l~~~l 112 (115)
T 1thx_A 86 VKGEQILDSTEGVISKD-KLLSFLDTHL 112 (115)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred EcCCEEEEEecCCCCHH-HHHHHHHHHh
Confidence 988884 4588988744 8999987653
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=115.26 Aligned_cols=99 Identities=15% Similarity=0.253 Sum_probs=83.0
Q ss_pred cCceeecCHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcce
Q psy160 86 KNEIEEVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Pt 159 (346)
.+.+.+++.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+.+ +.++.+| +..++++|+|+++||
T Consensus 4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~~v~~~Pt 81 (111)
T 2pu9_C 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPT 81 (111)
T ss_dssp TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC--eEEEEEecCcchHHHHHHcCCCeeeE
Confidence 347899999999999874 68999999999999999999999999998764 6666554 578999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++++++|+. ..+.|.. .++|.+++.+.
T Consensus 82 ~~~~~~G~~~~~~~G~~--~~~l~~~l~~~ 109 (111)
T 2pu9_C 82 FKILKENSVVGEVTGAK--YDKLLEAIQAA 109 (111)
T ss_dssp EEEESSSSEEEEEESSC--HHHHHHHHHHH
T ss_pred EEEEeCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 999999984 4577874 34788888754
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=116.48 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=85.7
Q ss_pred ccCceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 85 IKNEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.++.+..++.++|++.+ .++++++|+||++||++|+.+.|.+.++++.+.+ ++.++.++ +..++++|+|.++||+
T Consensus 11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 89 (119)
T 1w4v_A 11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDHTDLAIEYEVSAVPTV 89 (119)
T ss_dssp CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcccEE
Confidence 34589999999999865 5568999999999999999999999999998754 37777665 6789999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|++|+ ...+.|..+.+ .+.+|+.+.
T Consensus 90 ~~~~~G~~~~~~~G~~~~~-~l~~~l~~~ 117 (119)
T 1w4v_A 90 LAMKNGDVVDKFVGIKDED-QLEAFLKKL 117 (119)
T ss_dssp EEEETTEEEEEEESCCCHH-HHHHHHHHH
T ss_pred EEEeCCcEEEEEcCCCCHH-HHHHHHHHH
Confidence 9998887 44688887744 899988764
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=119.67 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc-
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP- 168 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~- 168 (346)
+.++|++.++++++++|.||++||++|+.+.|.++++++.+. ++.++.+| ++.++++|+|.++||+++|++|+.
T Consensus 7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 84 (105)
T 4euy_A 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI 84 (105)
T ss_dssp ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence 457777777788999999999999999999999999999874 36666655 778999999999999999999884
Q ss_pred ceecCCcchhHHHHHHHhhc
Q psy160 169 SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 169 ~~y~g~~~~~~~i~~fi~~~ 188 (346)
..+.|..+.+ ++.+++.+.
T Consensus 85 ~~~~g~~~~~-~l~~~l~~~ 103 (105)
T 4euy_A 85 LRESRFISLE-NLERTIQLF 103 (105)
T ss_dssp EEEESSCCHH-HHHHHHHTT
T ss_pred EEEeCCcCHH-HHHHHHHHh
Confidence 4578888744 899998764
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=114.53 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=79.9
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.+..++.++|+++++++++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+ .+++++++|+|.++||+++|
T Consensus 4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 82 (109)
T 3tco_A 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQKIADKYSVLNIPTTLIF 82 (109)
T ss_dssp CCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred CeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCHHHHHhcCcccCCEEEEE
Confidence 4677899999999998999999999999999999999999999999986 6888888 67899999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 83 ~~g~~~~~~~g~~~ 96 (109)
T 3tco_A 83 VNGQLVDSLVGAVD 96 (109)
T ss_dssp ETTEEEEEEESCCC
T ss_pred cCCcEEEeeeccCC
Confidence 999754 4778765
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=115.70 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred ccCceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 85 IKNEIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 85 ~~~~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
++..+.+++ .++++++++++++++|.||++||++|+.+.|.|.++++.+.+ +.++.+| ++.++++|+|.++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~~Pt~ 87 (114)
T 2oe3_A 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDESPDIAKECEVTAMPTF 87 (114)
T ss_dssp CGGGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSBSEE
T ss_pred chhheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCcccEE
Confidence 344666665 678889999999999999999999999999999999998765 6666665 6789999999999999
Q ss_pred EEEecCCc-ceecCCcchhHHHHHHHhh
Q psy160 161 VYFRHRFP-SIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 161 ~~~~~g~~-~~y~g~~~~~~~i~~fi~~ 187 (346)
++|++|+. ..+.|.. .+ .|.+++++
T Consensus 88 ~~~~~G~~~~~~~G~~-~~-~l~~~l~~ 113 (114)
T 2oe3_A 88 VLGKDGQLIGKIIGAN-PT-ALEKGIKD 113 (114)
T ss_dssp EEEETTEEEEEEESSC-HH-HHHHHHHT
T ss_pred EEEeCCeEEEEEeCCC-HH-HHHHHHHh
Confidence 99998884 4588877 34 88888864
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=125.78 Aligned_cols=214 Identities=9% Similarity=0.137 Sum_probs=151.6
Q ss_pred ceeec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC
Q psy160 88 EIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
.+.+| +.+.+++++.+++.++|.|+++||. ...+.|.++|..++.. +.|+.+.+..++++|++.+ |+|++|+.+
T Consensus 7 ~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~---~~~~~f~~~A~~lr~~-~~F~~~~~~~v~~~~~~~~-p~i~~fk~~ 81 (252)
T 2h8l_A 7 ASVPLRTEEEFKKFISDKDASIVGFFDDSFS---EAHSEFLKAASNLRDN-YRFAHTNVESLVNEYDDNG-EGIILFRPS 81 (252)
T ss_dssp CEEECCSHHHHHHHHTSSSCEEEEEESCTTS---HHHHHHHHHHHHTTTT-SCEEEECCHHHHHHHCSSS-EEEEEECCG
T ss_pred CceeecCHHHHHHHhhcCCeEEEEEECCCCC---hHHHHHHHHHHhcccC-cEEEEEChHHHHHHhCCCC-CcEEEEcch
Confidence 78888 4788999999889999999999854 5678999999998543 8898888899999999997 999999853
Q ss_pred --------Cccee-cCCcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcCCChh----hHHHHHHHHH
Q psy160 167 --------FPSIY-RGDLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKLNCNI----CDQILEGLEK 233 (346)
Q Consensus 167 --------~~~~y-~g~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~----c~~~~~~~~~ 233 (346)
....| +|.++ .++|.+|+..+..| .|..+|.+++.++ .+.+++|.|+...+.. ...+...+.+
T Consensus 82 ~~~~kf~e~~~~y~~g~~~-~~~l~~fi~~~~~P-lv~e~t~~n~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 157 (252)
T 2h8l_A 82 HLTNKFEDKTVAYTEQKMT-SGKIKKFIQENIFG-ICPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGSNYWRNRVMM 157 (252)
T ss_dssp GGCCTTSCSEEECCCSSCC-HHHHHHHHHHHSSC-SSCEECTTTHHHH--SSSSEEEEEECCBTTTBHHHHHHHHHHHHH
T ss_pred hhcccccccccccCCCCcC-HHHHHHHHHhcccC-CeeecccccHhhh--cCCCeEEEEeecchhhcchhHHHHHHHHHH
Confidence 35679 99886 55999999999987 6679999998886 3446677777543321 1257788889
Q ss_pred HHhhcCcC--ceEEEEE---cChhhhhhCCC----ccccEEEEEeC-CeEEEeecCccccccchhhhhhhccC-CCCCCc
Q psy160 234 VDDECDIY--GIHMVKI---QDPQLAKRYSI----KTFPALVYFRN-GNPLIFEGENKILKGTYIGTYISTKA-FSLIPF 302 (346)
Q Consensus 234 la~~~~~~--~i~~~~i---~~~~~~~~~~i----~~~Pti~~~~~-g~~~~y~g~~~~~~~~~~~~~i~~~~-~~~~~~ 302 (346)
+|+++++. .+.|+.+ ....+.+.||+ ..+|+++++.. ++...+.+..+.+. ..|..|++.-. ..+-|.
T Consensus 158 vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~~~~t~~~-~~i~~F~~~~~~Gkl~~~ 236 (252)
T 2h8l_A 158 VAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDG-KALERFLQDYFDGNLKRY 236 (252)
T ss_dssp HHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCEEECCSCCCTTS-HHHHHHHHHHHHTCSCCC
T ss_pred HHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcEecCCcccCcch-HHHHHHHHHHHCCCcccc
Confidence 99999851 2888888 45567888999 36899999853 44444555444221 11555555432 233355
Q ss_pred ccCCCCCCc
Q psy160 303 CFSEKHPGA 311 (346)
Q Consensus 303 ~~~~~~~~~ 311 (346)
+.++..|+.
T Consensus 237 ~kSe~iPe~ 245 (252)
T 2h8l_A 237 LKSEPIPES 245 (252)
T ss_dssp C--------
T ss_pred ccCCCCCCC
Confidence 556655544
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=117.42 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=83.3
Q ss_pred CceeecCH-HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNR-RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~-~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.-+.++++ ++|++.+.++++++|.||++||++|+.+.|.|.++++.+. ++.++.+| +++++++|+|.++||+++
T Consensus 19 ~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i 96 (125)
T 1r26_A 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFII 96 (125)
T ss_dssp SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence 35788887 9999999888999999999999999999999999999874 37777665 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.| .+ .++|.+++.+.
T Consensus 97 ~~~G~~~~~~~G-~~-~~~l~~~l~~~ 121 (125)
T 1r26_A 97 ARSGKMLGHVIG-AN-PGMLRQKLRDI 121 (125)
T ss_dssp EETTEEEEEEES-SC-HHHHHHHHHHH
T ss_pred EeCCeEEEEEeC-CC-HHHHHHHHHHH
Confidence 998884 45788 45 34888888764
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=114.84 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=83.8
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.|..++.++|++.+ +++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.++ ++.++++|+|.++||+++
T Consensus 5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 83 (112)
T 1t00_A 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTAAKYGVMSIPTLNV 83 (112)
T ss_dssp CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCCHHHHHhCCCCcccEEEE
Confidence 367889999998765 5568999999999999999999999999998854 36777665 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|..+.+ .+.+++.+.
T Consensus 84 ~~~G~~~~~~~G~~~~~-~l~~~l~~~ 109 (112)
T 1t00_A 84 YQGGEVAKTIVGAKPKA-AIVRDLEDF 109 (112)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHTHHH
T ss_pred EeCCEEEEEEeCCCCHH-HHHHHHHHH
Confidence 998884 4588988744 898888764
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=125.98 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=85.8
Q ss_pred cCceeecCHHHHHHHHhcCC--cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC-----
Q psy160 86 KNEIEEVNRRMLDKLLEENE--FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT----- 155 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~--~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~----- 155 (346)
++.+..++.++|++.+.+++ +++|+||++||++|+.+.|.|+++++.+.+.++.++.+| ++.++++|+|.
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT 85 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence 35788999999999987765 899999999999999999999999999865458888887 77899999999
Q ss_pred -CcceEEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 156 -KLPAVVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 156 -~~Ptl~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++||+++|++|+. ..+.|..+.+ .+.+|+.+.
T Consensus 86 ~~~Pt~~~~~~G~~~~~~~G~~~~~-~l~~~l~~~ 119 (137)
T 2dj0_A 86 KQLPTLILFQGGKEAMRRPQIDKKG-RAVSWTFSE 119 (137)
T ss_dssp SCSSEEEEESSSSEEEEESCBCSSS-CBCCCCCCH
T ss_pred CCCCEEEEEECCEEEEEecCcCchH-HHHHHHhcc
Confidence 9999999999884 4578877644 566666544
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=114.62 Aligned_cols=100 Identities=13% Similarity=0.242 Sum_probs=81.3
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+..++.++| +.+.++++++|.||++||++|+.+.|.++++++.+.+ +.++.+| ++.++++|+|.++||+++|+
T Consensus 4 ~~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 80 (110)
T 2l6c_A 4 IRDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ--VAISSVDSEARPELMKELGFERVPTLVFIR 80 (110)
T ss_dssp CSBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTT--SCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred eeecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCC--cEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence 4566788999 6677788999999999999999999999999988754 5555544 77899999999999999999
Q ss_pred cCCc-ceecCCcchhHHHHHHHhhcccc
Q psy160 165 HRFP-SIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 165 ~g~~-~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+|+. .++.|..+.+ +|.+++.....+
T Consensus 81 ~G~~v~~~~G~~~~~-~l~~~~~~~~~~ 107 (110)
T 2l6c_A 81 DGKVAKVFSGIMNPR-ELQALYASIHHH 107 (110)
T ss_dssp SSSEEEEEESCCCHH-HHHHHHHTC---
T ss_pred CCEEEEEEcCCCCHH-HHHHHHHHHhhh
Confidence 8984 4588987744 899998876543
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=128.36 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=91.9
Q ss_pred ccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 85 IKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
....+..++.++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+| ++.+|++|+|.++||++
T Consensus 95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 173 (210)
T 3apq_A 95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDDRMLCRMKGVNSYPSLF 173 (210)
T ss_dssp TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence 345789999999999998899999999999999999999999999999855 37777765 77899999999999999
Q ss_pred EEecCC-cceecCCcchhHHHHHHHhhcccc
Q psy160 162 YFRHRF-PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 162 ~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+|++|+ ...|.|..+.+ +|.+|+.+...+
T Consensus 174 ~~~~G~~~~~~~G~~~~~-~l~~~i~~~l~~ 203 (210)
T 3apq_A 174 IFRSGMAAVKYNGDRSKE-SLVAFAMQHVRS 203 (210)
T ss_dssp EECTTSCCEECCSCCCHH-HHHHHHHHHHHC
T ss_pred EEECCCceeEecCCCCHH-HHHHHHHHhCcc
Confidence 999888 56689988744 899999987655
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=115.15 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=84.2
Q ss_pred CceeecCHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 87 NEIEEVNRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
..+..++.++|++.+.. +++++|.||++||++|+.+.|.|+++++.+.+ +.++.+| ++.++++|+|.++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt 90 (122)
T 2vlu_A 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDELKPIAEQFSVEAMPT 90 (122)
T ss_dssp CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCCCHHHHHHcCCCcccE
Confidence 36788899999998864 78999999999999999999999999998765 6666665 678999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++|++|+. ..+.|.. .+ .+.+|+.+..
T Consensus 91 ~~~~~~G~~~~~~~G~~-~~-~l~~~l~~~l 119 (122)
T 2vlu_A 91 FLFMKEGDVKDRVVGAI-KE-ELTAKVGLHA 119 (122)
T ss_dssp EEEEETTEEEEEEESSC-HH-HHHHHHHHHH
T ss_pred EEEEeCCEEEEEEeCcC-HH-HHHHHHHHHh
Confidence 999998884 4588887 34 8999987654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=113.31 Aligned_cols=96 Identities=11% Similarity=0.214 Sum_probs=79.5
Q ss_pred eeec-CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEV-NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l-~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.++ +.++|++.+. ++++++|.||++||++|+.+.|.++++++.+. ++.++.+| +++++++|+|.++||+++
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 80 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPTFQF 80 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHhcCCCcccEEEE
Confidence 4455 6799999984 57899999999999999999999999999884 37777665 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|... . +|.+|+.+.
T Consensus 81 ~~~G~~~~~~~G~~~-~-~l~~~l~~~ 105 (107)
T 1gh2_A 81 FRNKVRIDQYQGADA-V-GLEEKIKQH 105 (107)
T ss_dssp EETTEEEEEEESSCH-H-HHHHHHHHH
T ss_pred EECCeEEEEEeCCCH-H-HHHHHHHHh
Confidence 998884 45788544 4 588888764
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=121.10 Aligned_cols=100 Identities=17% Similarity=0.372 Sum_probs=85.5
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE---cChhhhhhCCCccccEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
..+..++.++|++.++++++++|.||++||++|+.+.|.|.++++.+.+. .+.++.+ .+.+++++|+|.++||++
T Consensus 17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 96 (140)
T 2dj1_A 17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96 (140)
T ss_dssp TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEE
T ss_pred CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEE
Confidence 46778999999999888999999999999999999999999999998652 3889888 578899999999999999
Q ss_pred EEeCCeEEEeecCccccccchhhhhhhc
Q psy160 267 YFRNGNPLIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 267 ~~~~g~~~~y~g~~~~~~~~~~~~~i~~ 294 (346)
+|++|+...|.|.++.+. +..+++.
T Consensus 97 ~~~~G~~~~~~g~~~~~~---l~~~l~~ 121 (140)
T 2dj1_A 97 ILKKGQAVDYDGSRTQEE---IVAKVRE 121 (140)
T ss_dssp EEETTEEEECCSCCCHHH---HHHHHHH
T ss_pred EEECCcEEEcCCCCCHHH---HHHHHHH
Confidence 999999778888876333 5555554
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=119.60 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=84.2
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.+.+++.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.++++|+|.++||+++
T Consensus 22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 100 (128)
T 2o8v_B 22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 100 (128)
T ss_dssp CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTCCTTSGGGTCCSSSEEEE
T ss_pred cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence 357889999999765 5678999999999999999999999999998854 37777765 678999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|..+.+ +|.+|+++.
T Consensus 101 ~~~G~~~~~~~G~~~~~-~l~~~l~~~ 126 (128)
T 2o8v_B 101 FKNGEVAATKVGALSKG-QLKEFLDAN 126 (128)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHH
T ss_pred EeCCEEEEEEcCCCCHH-HHHHHHHHh
Confidence 988884 4588988744 899998764
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=111.64 Aligned_cols=97 Identities=13% Similarity=0.278 Sum_probs=80.6
Q ss_pred eeecCH-HHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEVNR-RMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l~~-~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.++++ ++|++.+. ++++++|.||++||++|+.+.|.++++++.+.. ++.++.++ ++.++++|+|.++||+++
T Consensus 2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 80 (106)
T 1xwb_A 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFVF 80 (106)
T ss_dssp EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccchHHHHHHcCCCcccEEEE
Confidence 456776 99999887 678999999999999999999999999998742 47777665 678999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+ ...+.| .+ .+.+.+++.+.
T Consensus 81 ~~~G~~~~~~~g-~~-~~~l~~~i~~~ 105 (106)
T 1xwb_A 81 LKNGVKVEEFAG-AN-AKRLEDVIKAN 105 (106)
T ss_dssp EETTEEEEEEES-CC-HHHHHHHHHHT
T ss_pred EcCCcEEEEEcC-CC-HHHHHHHHHHh
Confidence 99888 445788 55 34788888753
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-15 Score=111.61 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=80.2
Q ss_pred eec-CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 90 EEV-NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 90 ~~l-~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.++ +.+++++.+. ++++++|.||++||++|+.+.|.++++++.+.+ +.++.+| .+.++++|+|.++||+++|
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASESEVKSMPTFQFF 80 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhhhHHHHHHcCCCcCcEEEEE
Confidence 344 5789999998 678999999999999999999999999998865 6666665 7789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+. ..+.|. + .+++.+++.+.
T Consensus 81 ~~g~~~~~~~g~-~-~~~l~~~l~~~ 104 (105)
T 3m9j_A 81 KKGQKVGEFSGA-N-KEKLEATINEL 104 (105)
T ss_dssp ETTEEEEEEESS-C-HHHHHHHHHHH
T ss_pred ECCeEEEEEeCC-C-HHHHHHHHHHh
Confidence 98884 458888 5 44899988753
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=119.86 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=79.8
Q ss_pred CcEEEccHHHHH-HHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 192 DRIELITRVMLE-TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 192 ~~v~~l~~~~~~-~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
..+..++.++|+ .+++++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .+++++++|+|+++||+++
T Consensus 6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 84 (140)
T 3hz4_A 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATNPWTAEKYGVQGTPTFKF 84 (140)
T ss_dssp TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence 467899999999 4677889999999999999999999999999999986 6888888 6789999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
|++|+.+ .|.|..+
T Consensus 85 ~~~G~~~~~~~G~~~ 99 (140)
T 3hz4_A 85 FCHGRPVWEQVGQIY 99 (140)
T ss_dssp EETTEEEEEEESSCC
T ss_pred EeCCcEEEEEcCCCC
Confidence 9999865 5788765
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=114.33 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=80.9
Q ss_pred ceeecCH-HHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEVNR-RMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l~~-~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+.++++ ++|++.+. ++++++|.||++||++|+.+.|.++++++.+ ++.++.+| ++.++++|+|.++||++
T Consensus 14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 90 (117)
T 2xc2_A 14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKLEETARKYNISAMPTFI 90 (117)
T ss_dssp EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCccHHHHHHcCCCccceEE
Confidence 4778887 99999988 6789999999999999999999999999887 47777665 67899999999999999
Q ss_pred EEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 162 YFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 162 ~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|++|+. ..+.| .+ .+++.+++++.
T Consensus 91 ~~~~G~~~~~~~G-~~-~~~l~~~l~~~ 116 (117)
T 2xc2_A 91 AIKNGEKVGDVVG-AS-IAKVEDMIKKF 116 (117)
T ss_dssp EEETTEEEEEEES-SC-HHHHHHHHHHH
T ss_pred EEeCCcEEEEEeC-CC-HHHHHHHHHHh
Confidence 9998884 45778 44 34788888753
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=112.27 Aligned_cols=87 Identities=18% Similarity=0.419 Sum_probs=77.0
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
+..++.++|+++++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||++++++
T Consensus 2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (105)
T 1nsw_A 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFKG 80 (105)
T ss_dssp CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence 45788899998888889999999999999999999999999999876 6888888 5788999999999999999999
Q ss_pred CeEE-EeecCcc
Q psy160 271 GNPL-IFEGENK 281 (346)
Q Consensus 271 g~~~-~y~g~~~ 281 (346)
|+.+ .+.|..+
T Consensus 81 G~~~~~~~G~~~ 92 (105)
T 1nsw_A 81 GRPVKQLIGYQP 92 (105)
T ss_dssp TEEEEEEESCCC
T ss_pred CeEEEEEecCCC
Confidence 9854 4778765
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-15 Score=115.26 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=82.9
Q ss_pred cCceeecCHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcce
Q psy160 86 KNEIEEVNRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Pt 159 (346)
.+.+.+++.++|++.+. ++++++|.||++||++|+++.|.++++++.+.+ +.++.+| +++++++|+|+++||
T Consensus 17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~~~~~~~~~~v~~~Pt 94 (124)
T 1faa_A 17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPT 94 (124)
T ss_dssp TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC--CEEEEEecCcchHHHHHHcCCCeeeE
Confidence 34789999999999887 568999999999999999999999999998764 6666554 578999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++++++|+. ..+.|.. .+++.+++.+.
T Consensus 95 ~~~~~~G~~~~~~~G~~--~~~l~~~i~~~ 122 (124)
T 1faa_A 95 FKILKENSVVGEVTGAK--YDKLLEAIQAA 122 (124)
T ss_dssp EEEEETTEEEEEEESSC--HHHHHHHHHHH
T ss_pred EEEEeCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 999999984 4577875 34788888764
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=113.17 Aligned_cols=98 Identities=15% Similarity=0.403 Sum_probs=81.6
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE---cChhhhhhCCCccccEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
+.+..++.++|++.+. +++++|.||++||++|+.+.|.+.++++.+... .+.++.+ .+++++++|+|+++||++
T Consensus 5 ~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~ 83 (111)
T 3uvt_A 5 STVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLL 83 (111)
T ss_dssp CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEE
Confidence 4677899999999887 779999999999999999999999999987532 5888888 678899999999999999
Q ss_pred EEeCCeEE-EeecCccccccchhhhhhh
Q psy160 267 YFRNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|++|+.+ .+.|..+.+. +..+++
T Consensus 84 ~~~~g~~~~~~~g~~~~~~---l~~~l~ 108 (111)
T 3uvt_A 84 LFRGGKKVSEHSGGRDLDS---LHRFVL 108 (111)
T ss_dssp EEETTEEEEEECSCCSHHH---HHHHHH
T ss_pred EEeCCcEEEeccCCcCHHH---HHHHHH
Confidence 99999854 6778765332 555554
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=110.77 Aligned_cols=95 Identities=18% Similarity=0.357 Sum_probs=79.1
Q ss_pred eecCH-HHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 90 EEVNR-RMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 90 ~~l~~-~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.++++ ++|++.+. ++++++|.||++||++|+.+.|.+.++++.+. ++.++.++ ++.++++|+|.++||+++|
T Consensus 2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 79 (104)
T 2vim_A 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAAAKYSVTAMPTFVFI 79 (104)
T ss_dssp EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCCHHHHHHcCCccccEEEEE
Confidence 45665 99999988 67899999999999999999999999999875 46777665 6789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+. ..+.| .+ .+++.+++.+.
T Consensus 80 ~~g~~~~~~~G-~~-~~~l~~~l~~~ 103 (104)
T 2vim_A 80 KDGKEVDRFSG-AN-ETKLRETITRH 103 (104)
T ss_dssp ETTEEEEEEES-SC-HHHHHHHHHHH
T ss_pred eCCcEEEEEeC-CC-HHHHHHHHHhh
Confidence 98884 45778 45 44798888753
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=114.17 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=82.2
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
+..++.++|++.+ ++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .+.+++++|+|.++||+++|++
T Consensus 3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (112)
T 2voc_A 3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTLLVLKD 80 (112)
T ss_dssp CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTCCSHHHHTTCCSBSEEEEEET
T ss_pred eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence 4578899999988 888999999999999999999999999999986 7888888 5778999999999999999999
Q ss_pred CeEE-EeecCccccccchhhhhhhcc
Q psy160 271 GNPL-IFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 271 g~~~-~y~g~~~~~~~~~~~~~i~~~ 295 (346)
|+.+ .+.|..+.+. +..++...
T Consensus 81 G~~~~~~~G~~~~~~---l~~~l~~~ 103 (112)
T 2voc_A 81 GEVVETSVGFKPKEA---LQELVNKH 103 (112)
T ss_dssp TEEEEEEESCCCHHH---HHHHHHTT
T ss_pred CEEEEEEeCCCCHHH---HHHHHHHH
Confidence 9854 5788876333 55666543
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=118.15 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=84.0
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe---------C-ChhhHHhhCCC
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM---------A-DPRYARKWGVT 155 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---------~-~~~l~~~~~i~ 155 (346)
++.+..++.++|++.+.+ +++|.||++||++|+.+.|.|.++++.+. ..+..+.+ + .+.++++|+|.
T Consensus 15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~ 91 (135)
T 3emx_A 15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGVE 91 (135)
T ss_dssp TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTCC
T ss_pred cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCCc
Confidence 347889999999999877 99999999999999999999999999875 44555555 3 56799999999
Q ss_pred CcceEEEEecCC-cceecCCcchhHHHHHHHhhcccc
Q psy160 156 KLPAVVYFRHRF-PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 156 ~~Ptl~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++||+++|++|+ ...+.|....+ .+.+++++...+
T Consensus 92 ~~Pt~~~~~~G~~v~~~~G~~~~~-~~~~~i~~~~~~ 127 (135)
T 3emx_A 92 GTPTLVFYKEGRIVDKLVGATPWS-LKVEKAREIYGG 127 (135)
T ss_dssp SSSEEEEEETTEEEEEEESCCCHH-HHHHHHHHHC--
T ss_pred eeCeEEEEcCCEEEEEEeCCCCHH-HHHHHHHHHhCC
Confidence 999999999988 44588988744 788888776543
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=112.02 Aligned_cols=97 Identities=14% Similarity=0.268 Sum_probs=81.4
Q ss_pred eeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|..++.++|++.+. ++++++|+||++||++|+.+.|.+.++++.+.+ ++.++.++ ++.++++|+|.++||+++++
T Consensus 2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 80 (105)
T 1fb6_A 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80 (105)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcchHHHHHhCCCCcccEEEEEe
Confidence 56789999998764 568999999999999999999999999998854 36777664 67899999999999999999
Q ss_pred cCCc-ceecCCcchhHHHHHHHhh
Q psy160 165 HRFP-SIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~~-~~y~g~~~~~~~i~~fi~~ 187 (346)
+|+. ..+.|..+.+ .+.+++.+
T Consensus 81 ~g~~~~~~~G~~~~~-~l~~~l~~ 103 (105)
T 1fb6_A 81 NGERKESIIGAVPKS-TLTDSIEK 103 (105)
T ss_dssp TTEEEEEEEECCCHH-HHHHHHHH
T ss_pred CCeEEEEEecCCCHH-HHHHHHHh
Confidence 8884 4578887744 78888865
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=128.24 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=89.7
Q ss_pred cccCceeecCHHHHHHH-HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 84 EIKNEIEEVNRRMLDKL-LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 84 ~~~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
..+..+..+|.++|++. +.++++++|.||++||++|+.+.|.|.++++.+.+. +.++.++ ++.++++|+|.++||
T Consensus 9 ~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt 87 (222)
T 3dxb_A 9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIRGIPT 87 (222)
T ss_dssp CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCTTTGGGGTCCSBSE
T ss_pred CCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45678999999999884 567789999999999999999999999999998653 6676665 678999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhccc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
+++|++|+. ..+.|..+.+ .+.+|+.+...
T Consensus 88 ~~~~~~G~~~~~~~G~~~~~-~l~~~l~~~l~ 118 (222)
T 3dxb_A 88 LLLFKNGEVAATKVGALSKG-QLKEFLDANLA 118 (222)
T ss_dssp EEEEETTEEEEEEESCCCHH-HHHHHHHHHSC
T ss_pred EEEEECCeEEEEeccccChH-HHHHHHHhhcc
Confidence 999999884 4688988744 89999988654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-15 Score=111.92 Aligned_cols=98 Identities=20% Similarity=0.422 Sum_probs=82.7
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++|+++++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++|++++|+
T Consensus 2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 80 (109)
T 2yzu_A 2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDENPKTAMRYRVMSIPTVILFK 80 (109)
T ss_dssp CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence 356889999998888899999999999999999999999999999886 6888888 578899999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhhc
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
+|+.+ .+.|..+.+. +..+++.
T Consensus 81 ~g~~~~~~~g~~~~~~---l~~~l~~ 103 (109)
T 2yzu_A 81 DGQPVEVLVGAQPKRN---YQAKIEK 103 (109)
T ss_dssp TTEEEEEEESCCCHHH---HHHHHHT
T ss_pred CCcEeeeEeCCCCHHH---HHHHHHH
Confidence 99864 4778765322 5555543
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=111.91 Aligned_cols=96 Identities=22% Similarity=0.448 Sum_probs=81.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++|++.+ ++++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .+++++++|+|+++||+++|+
T Consensus 4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 81 (106)
T 3die_A 4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEG-KADILKLDVDENPSTAAKYEVMSIPTLIVFK 81 (106)
T ss_dssp CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEECCcCHHHHHhCCCcccCEEEEEe
Confidence 46688999999988 889999999999999999999999999999986 6888888 678899999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhh
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.+ .+.|..+.+. +..+++
T Consensus 82 ~G~~~~~~~g~~~~~~---l~~~l~ 103 (106)
T 3die_A 82 DGQPVDKVVGFQPKEN---LAEVLD 103 (106)
T ss_dssp TTEEEEEEESCCCHHH---HHHHHH
T ss_pred CCeEEEEEeCCCCHHH---HHHHHH
Confidence 99754 5778765322 445444
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=114.27 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=85.3
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
..+..++.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+ ++.++.++ ++.++++|+|.++||+++
T Consensus 12 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 90 (121)
T 2i1u_A 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTNPETARNFQVVSIPTLIL 90 (121)
T ss_dssp CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhcCCCcCCEEEE
Confidence 478899999998755 5678999999999999999999999999998854 37777665 778999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+. ..+.|..+.+ .+.+++.+..
T Consensus 91 ~~~g~~~~~~~G~~~~~-~l~~~l~~~l 117 (121)
T 2i1u_A 91 FKDGQPVKRIVGAKGKA-ALLRELSDVV 117 (121)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHTCSCC
T ss_pred EECCEEEEEecCCCCHH-HHHHHHHHHH
Confidence 998884 4588988744 8999987654
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=114.67 Aligned_cols=86 Identities=13% Similarity=0.342 Sum_probs=75.7
Q ss_pred CcEEEccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 192 DRIELITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
......+.++|+++++ .+++++|.||++||++|+.+.|.++++++.+.+ +.|+.+ .+++++++|+|.++||++
T Consensus 12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 89 (116)
T 3qfa_C 12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKSMPTFQ 89 (116)
T ss_dssp CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCccccEEE
Confidence 4556778999999887 789999999999999999999999999999874 888888 678999999999999999
Q ss_pred EEeCCeEE-EeecC
Q psy160 267 YFRNGNPL-IFEGE 279 (346)
Q Consensus 267 ~~~~g~~~-~y~g~ 279 (346)
+|++|+.+ .+.|.
T Consensus 90 ~~~~G~~~~~~~G~ 103 (116)
T 3qfa_C 90 FFKKGQKVGEFSGA 103 (116)
T ss_dssp EESSSSEEEEEESC
T ss_pred EEeCCeEEEEEcCC
Confidence 99999754 46676
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=118.06 Aligned_cols=102 Identities=11% Similarity=0.257 Sum_probs=84.7
Q ss_pred cCceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC----CCcEEEEeC--ChhhHHhhCCCCcc
Q psy160 86 KNEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDN----MDITFVKMA--DPRYARKWGVTKLP 158 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~----~~i~~~~~~--~~~l~~~~~i~~~P 158 (346)
.+.+.+++.++|++.+ .++++++|+||++||++|+.+.|.|+++++.+.+ .++.++.+| ...+++ +|.++|
T Consensus 6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~--~v~~~P 83 (121)
T 2djj_A 6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD--EIQGFP 83 (121)
T ss_dssp SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS--CCSSSS
T ss_pred CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc--ccCcCC
Confidence 4578999999999886 5678999999999999999999999999999854 257777776 334665 999999
Q ss_pred eEEEEecC-C--cceecCCcchhHHHHHHHhhccc
Q psy160 159 AVVYFRHR-F--PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 159 tl~~~~~g-~--~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|+++|.+| + ...|.|.++.+ +|.+|+.+...
T Consensus 84 t~~~~~~~~~~~~~~~~G~~~~~-~l~~~i~~~~~ 117 (121)
T 2djj_A 84 TIKLYPAGAKGQPVTYSGSRTVE-DLIKFIAENGK 117 (121)
T ss_dssp EEEEECSSCTTSCCCCCCCSCHH-HHHHHHHHTSS
T ss_pred eEEEEeCcCCCCceEecCCCCHH-HHHHHHHhccC
Confidence 99999886 4 56799988744 89999987653
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-15 Score=111.45 Aligned_cols=88 Identities=26% Similarity=0.436 Sum_probs=77.0
Q ss_pred cEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++. ++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||+++|
T Consensus 3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 81 (108)
T 2trx_A 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 81 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence 5678899999864 56788999999999999999999999999999886 6888888 57889999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 82 ~~G~~~~~~~G~~~ 95 (108)
T 2trx_A 82 KNGEVAATKVGALS 95 (108)
T ss_dssp ETTEEEEEEESCCC
T ss_pred eCCEEEEEEecCCC
Confidence 999854 4677765
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=114.96 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=78.1
Q ss_pred CceeecCHHHHHHHHhcC-C--cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEE
Q psy160 87 NEIEEVNRRMLDKLLEEN-E--FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~-~--~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~ 163 (346)
+.+.+++.++|.+.+.++ + +++|.||++||++|+.+.|.++++|+++. ++.|+++|-.+.+.+|+|++.||+++|
T Consensus 3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~~~~~~v~~~PT~~~f 80 (118)
T 3evi_A 3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSCIQHYHDNCLPTIFVY 80 (118)
T ss_dssp CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGTSTTCCGGGCSEEEEE
T ss_pred cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHHHCCCCCCCEEEEE
Confidence 367889999999877554 3 79999999999999999999999999875 388888885566899999999999999
Q ss_pred ecCCcc-eecCCcc------hhHHHHHHHhh
Q psy160 164 RHRFPS-IYRGDLS------EEEEVLQWLIT 187 (346)
Q Consensus 164 ~~g~~~-~y~g~~~------~~~~i~~fi~~ 187 (346)
++|+.+ ++.|... +.+++..++.+
T Consensus 81 k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~ 111 (118)
T 3evi_A 81 KNGQIEAKFIGIIECGGINLKLEELEWKLAE 111 (118)
T ss_dssp ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence 999843 3555432 23355555544
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=127.63 Aligned_cols=98 Identities=16% Similarity=0.322 Sum_probs=87.7
Q ss_pred CceeecCHHHHHHHHhcCCcEEEEEEC--CCChhHHHHHHHHHHHHhhccC-CCcEEEEeC--------ChhhHHhhCCC
Q psy160 87 NEIEEVNRRMLDKLLEENEFVTVFFYE--TDHKDSVKVLERLEKIDGETDN-MDITFVKMA--------DPRYARKWGVT 155 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~~~lv~F~~--~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~--------~~~l~~~~~i~ 155 (346)
+.|.+|++++|++++.++++|+|.||+ |||+ +.|.|+++++.+.+ .++.|+.+| ++++|++|+|+
T Consensus 5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~ 80 (240)
T 2qc7_A 5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD 80 (240)
T ss_dssp TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence 468899999999999888999999999 9999 99999999999853 458899888 68899999999
Q ss_pred --CcceEEEEecCC---cceecCCcchhHHHHHHHhhcc
Q psy160 156 --KLPAVVYFRHRF---PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 156 --~~Ptl~~~~~g~---~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
++||+++|++|+ +..|.|.++.+ .|.+|+.+..
T Consensus 81 ~~~~PTl~~f~~G~~~~~~~y~G~~~~~-~L~~fi~~~~ 118 (240)
T 2qc7_A 81 KESYPVFYLFRDGDFENPVPYTGAVKVG-AIQRWLKGQG 118 (240)
T ss_dssp GGGCSEEEEEETTCSSCCEECCSCSCHH-HHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCcCcceeecCCCCHH-HHHHHHHHhc
Confidence 999999999987 67899998854 9999999874
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=119.16 Aligned_cols=99 Identities=20% Similarity=0.354 Sum_probs=83.4
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
..+..++.++|++.++++++++|.||++||++|+.+.|.|+++++++.+ ++.|+.+ .+++++++|+|+++||+++|
T Consensus 47 ~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 125 (155)
T 2ppt_A 47 GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125 (155)
T ss_dssp SSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTSTHHHHHTTCCSSSEEEEE
T ss_pred CCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCccHHHHHHcCCCcCCEEEEE
Confidence 4567889999999887788999999999999999999999999999986 6899988 57889999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhhc
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|+.+ .+.|..+.+. +..|++.
T Consensus 126 ~~G~~~~~~~G~~~~~~---l~~~l~~ 149 (155)
T 2ppt_A 126 HKGRELARAAGARPASE---LVGFVRG 149 (155)
T ss_dssp ETTEEEEEEESCCCHHH---HHHHHHH
T ss_pred eCCeEEEEecCCCCHHH---HHHHHHH
Confidence 999864 4778765322 5555543
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=121.71 Aligned_cols=81 Identities=16% Similarity=0.303 Sum_probs=72.2
Q ss_pred cCcEEEccHHHHHHHHhc--cceEEEEEEc-------CCChhhHHHHHHHHHHHhhcC-----cCceEEEEE---cChhh
Q psy160 191 EDRIELITRVMLETMVEE--TQYLAVYFYK-------LNCNICDQILEGLEKVDDECD-----IYGIHMVKI---QDPQL 253 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~-------~~c~~c~~~~~~~~~la~~~~-----~~~i~~~~i---~~~~~ 253 (346)
++.+..+|.++|++++.. +.+++|+||| +||++|+.+.|.|+++|+.+. + ++.|+++ +++++
T Consensus 17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~-~v~f~kvD~d~~~~l 95 (178)
T 3ga4_A 17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQS-LNLFFTVDVNEVPQL 95 (178)
T ss_dssp TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEEETTTCHHH
T ss_pred cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCC-CEEEEEEECccCHHH
Confidence 456779999999998754 4579999999 499999999999999999986 4 7999999 78999
Q ss_pred hhhCCCccccEEEEEeCCe
Q psy160 254 AKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 254 ~~~~~i~~~Pti~~~~~g~ 272 (346)
+++|+|+++||+++|++|.
T Consensus 96 a~~~~I~siPtl~~F~~g~ 114 (178)
T 3ga4_A 96 VKDLKLQNVPHLVVYPPAE 114 (178)
T ss_dssp HHHTTCCSSCEEEEECCCC
T ss_pred HHHcCCCCCCEEEEEcCCC
Confidence 9999999999999999884
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-16 Score=121.06 Aligned_cols=104 Identities=13% Similarity=0.231 Sum_probs=86.6
Q ss_pred cCceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
...|..++.++|+..+.. +++++|+||++||++|+.+.|.|.++++.+.. .++.++.+| +..++++|+|.++||+
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 85 (133)
T 2dj3_A 6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85 (133)
T ss_dssp SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence 347899999999988764 78999999999999999999999999999853 358888887 5678889999999999
Q ss_pred EEEecCC---cceec-CCcchhHHHHHHHhhccc
Q psy160 161 VYFRHRF---PSIYR-GDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 161 ~~~~~g~---~~~y~-g~~~~~~~i~~fi~~~~~ 190 (346)
++|.+|. ...|. |.++ .++|.+|+.+...
T Consensus 86 ~~~~~g~~~~~~~~~gg~~~-~~~l~~~l~~~~~ 118 (133)
T 2dj3_A 86 YFAPSGDKKNPIKFEGGNRD-LEHLSKFIDEHAT 118 (133)
T ss_dssp EEECTTCTTSCEECCSSCCS-TTHHHHHHHHHSS
T ss_pred EEEeCCCcccceEecCCCcC-HHHHHHHHHHhcc
Confidence 9998765 33577 4466 4489999988754
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=115.02 Aligned_cols=99 Identities=14% Similarity=0.266 Sum_probs=82.3
Q ss_pred ceeecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 88 EIEEVN-RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 88 ~v~~l~-~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
.+..++ .++|++++.++++++|.||++||++|+.+.|.+.++++.+.+.++.++.++ +++++++|+|.++||+++|
T Consensus 16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 95 (121)
T 2j23_A 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFF 95 (121)
T ss_dssp CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEE
T ss_pred ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEE
Confidence 555565 699999998889999999999999999999999999998854346666654 6789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+. ..+.|. + .++|.+|+.+.
T Consensus 96 ~~G~~~~~~~G~-~-~~~l~~~l~~~ 119 (121)
T 2j23_A 96 KNGQKIDTVVGA-D-PSKLQAAITQH 119 (121)
T ss_dssp ETTEEEEEEESS-C-HHHHHHHHHHH
T ss_pred ECCeEEeeEcCC-C-HHHHHHHHHHh
Confidence 98884 457887 5 44899988764
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=117.83 Aligned_cols=99 Identities=22% Similarity=0.406 Sum_probs=82.4
Q ss_pred cCcEEEccHHHHHHHHhc------------cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhh
Q psy160 191 EDRIELITRVMLETMVEE------------TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAK 255 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~------------~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~ 255 (346)
++.+..++.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .++++++
T Consensus 21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 99 (141)
T 3hxs_A 21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELAR 99 (141)
T ss_dssp --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHH
T ss_pred CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCHHHHH
Confidence 456778999999986653 78999999999999999999999999999986 6888888 6789999
Q ss_pred hCCCccccEEEEE-eCCeEEEeecCccccccchhhhhhh
Q psy160 256 RYSIKTFPALVYF-RNGNPLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 256 ~~~i~~~Pti~~~-~~g~~~~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+|.++|++++| ++|+...+.|..+.+. +..+++
T Consensus 100 ~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~---l~~~l~ 135 (141)
T 3hxs_A 100 DFGIQSIPTIWFVPMKGEPQVNMGALSKEQ---LKGYID 135 (141)
T ss_dssp HTTCCSSSEEEEECSSSCCEEEESCCCHHH---HHHHHH
T ss_pred HcCCCCcCEEEEEeCCCCEEEEeCCCCHHH---HHHHHH
Confidence 9999999999999 6777778888876333 555544
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-15 Score=116.77 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=83.9
Q ss_pred CcEEEccHHHHHHHHh------------ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhh
Q psy160 192 DRIELITRVMLETMVE------------ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKR 256 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~------------~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~ 256 (346)
..+..++.++|++.+. ++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .+++++++
T Consensus 9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~ 87 (136)
T 2l5l_A 9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQELAGA 87 (136)
T ss_dssp TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHH
Confidence 4577889999998654 468999999999999999999999999999886 6888888 57789999
Q ss_pred CCCccccEEEEE-eCCeEEEeecCccccccchhhhhhhcc
Q psy160 257 YSIKTFPALVYF-RNGNPLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
|+|.++||+++| ++|+.+.+.|..+.+. +..+++..
T Consensus 88 ~~v~~~Pt~~~~~~~G~~~~~~G~~~~~~---l~~~l~~~ 124 (136)
T 2l5l_A 88 FGIRSIPSILFIPMEGKPEMAQGAMPKAS---FKKAIDEF 124 (136)
T ss_dssp TTCCSSCEEEEECSSSCCEEEESCCCHHH---HHHHHHHH
T ss_pred cCCCCCCEEEEECCCCcEEEEeCCCCHHH---HHHHHHHH
Confidence 999999999999 8898878888876433 55555543
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=110.16 Aligned_cols=97 Identities=15% Similarity=0.359 Sum_probs=81.2
Q ss_pred cEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++. .+++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .++.++++|+|.++|++++|
T Consensus 3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 81 (107)
T 2i4a_A 3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETPNAYQVRSIPTLMLV 81 (107)
T ss_dssp CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence 5678899999875 46788999999999999999999999999999986 7888888 57789999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhh
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
++|+.+ .+.|..+.+. +..+++
T Consensus 82 ~~G~~~~~~~G~~~~~~---l~~~l~ 104 (107)
T 2i4a_A 82 RDGKVIDKKVGALPKSQ---LKAWVE 104 (107)
T ss_dssp ETTEEEEEEESCCCHHH---HHHHHH
T ss_pred eCCEEEEEecCCCCHHH---HHHHHH
Confidence 999864 4778765322 555544
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=112.97 Aligned_cols=99 Identities=11% Similarity=0.225 Sum_probs=82.0
Q ss_pred cCceeec-CHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCc
Q psy160 86 KNEIEEV-NRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKL 157 (346)
Q Consensus 86 ~~~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~ 157 (346)
...+.++ +.++|++.+.. +++++|.||++||++|+.+.|.|+++++.+. ++.++.+| ++.++++|+|.++
T Consensus 15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~ 92 (124)
T 1xfl_A 15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAM 92 (124)
T ss_dssp CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSS
T ss_pred CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHHcCCCcc
Confidence 3467777 68999998865 7899999999999999999999999999875 47777665 6789999999999
Q ss_pred ceEEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 158 PAVVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
||+++|++|+. ..+.|. + .+++.+++.+.
T Consensus 93 Pt~~~~~~G~~~~~~~G~-~-~~~l~~~l~~~ 122 (124)
T 1xfl_A 93 PTFMFLKEGKILDKVVGA-K-KDELQSTIAKH 122 (124)
T ss_dssp SEEEEEETTEEEEEEESC-C-HHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCC-C-HHHHHHHHHHh
Confidence 99999998884 357774 4 44888888764
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=118.62 Aligned_cols=99 Identities=17% Similarity=0.436 Sum_probs=84.3
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
...+..++.++|++.+..+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+ .+++++++|+|.++||+++
T Consensus 37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 115 (148)
T 3p2a_A 37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRSIPTIML 115 (148)
T ss_dssp CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCHHHHHHCCCCccCEEEE
Confidence 34677899999999888899999999999999999999999999999976 6888888 6789999999999999999
Q ss_pred EeCCeEE-EeecCccccccchhhhhhh
Q psy160 268 FRNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
|++|+.+ .|.|..+.+. +..+++
T Consensus 116 ~~~G~~~~~~~G~~~~~~---l~~~l~ 139 (148)
T 3p2a_A 116 YRNGKMIDMLNGAVPKAP---FDNWLD 139 (148)
T ss_dssp EETTEEEEEESSCCCHHH---HHHHHH
T ss_pred EECCeEEEEEeCCCCHHH---HHHHHH
Confidence 9999864 4778765332 444544
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=117.04 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=72.3
Q ss_pred CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 87 NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
+.+.+++.++|++.+..++.++|+||++||++|+.+.|.|+++++.+.+ ++.++.+| +..++++|+|.++||+++|
T Consensus 33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 111 (140)
T 1v98_A 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111 (140)
T ss_dssp ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence 4678899999999877665599999999999999999999999998864 37777765 7789999999999999999
Q ss_pred ecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 164 RHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 164 ~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
++|+. ..+.|..+.+ .+.+|+.+..
T Consensus 112 ~~G~~~~~~~G~~~~~-~l~~~i~~~l 137 (140)
T 1v98_A 112 RRGAPVATWVGASPRR-VLEERLRPYL 137 (140)
T ss_dssp ETTEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred eCCcEEEEEeCCCCHH-HHHHHHHHHH
Confidence 98884 4588988744 8999987654
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=110.72 Aligned_cols=85 Identities=20% Similarity=0.424 Sum_probs=74.7
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.....+.++|+++++++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++||+++|+
T Consensus 8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 85 (109)
T 3f3q_A 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDELGDVAQKNEVSAMPTLLLFK 85 (109)
T ss_dssp CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCccCEEEEEE
Confidence 44566789999999999999999999999999999999999999987 4777777 678999999999999999999
Q ss_pred CCeEE-EeecC
Q psy160 270 NGNPL-IFEGE 279 (346)
Q Consensus 270 ~g~~~-~y~g~ 279 (346)
+|+.+ .+.|.
T Consensus 86 ~G~~~~~~~G~ 96 (109)
T 3f3q_A 86 NGKEVAKVVGA 96 (109)
T ss_dssp TTEEEEEEESS
T ss_pred CCEEEEEEeCC
Confidence 99864 46676
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=113.82 Aligned_cols=91 Identities=24% Similarity=0.390 Sum_probs=65.0
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
+.++|+++++++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++||+++|++|+.+
T Consensus 7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 84 (105)
T 4euy_A 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI 84 (105)
T ss_dssp ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence 456777777888999999999999999999999999999984 6888887 67889999999999999999999864
Q ss_pred -EeecCccccccchhhhhhh
Q psy160 275 -IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 275 -~y~g~~~~~~~~~~~~~i~ 293 (346)
.+.|..+.+. +..+++
T Consensus 85 ~~~~g~~~~~~---l~~~l~ 101 (105)
T 4euy_A 85 LRESRFISLEN---LERTIQ 101 (105)
T ss_dssp EEEESSCCHHH---HHHHHH
T ss_pred EEEeCCcCHHH---HHHHHH
Confidence 4677765322 444444
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=117.24 Aligned_cols=95 Identities=11% Similarity=0.270 Sum_probs=79.0
Q ss_pred cCHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecC
Q psy160 92 VNRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 92 l~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
.+.++|++.+. ++++++|.|||+||++|+.+.|.++++++.+.+. +.++.+| ++.++++|+|.++||++++++|
T Consensus 9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 87 (149)
T 3gix_A 9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG 87 (149)
T ss_dssp CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTTCCHHHHHTTCCSSSEEEEEETT
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCcCHHHHHHcCCCccCeEEEEECC
Confidence 46889999885 4789999999999999999999999999988543 6666665 7789999999999999999999
Q ss_pred Ccc----------eecC-CcchhHHHHHHHhhc
Q psy160 167 FPS----------IYRG-DLSEEEEVLQWLITQ 188 (346)
Q Consensus 167 ~~~----------~y~g-~~~~~~~i~~fi~~~ 188 (346)
+.. .+.| ..+ .+++.++++..
T Consensus 88 ~~v~~~~g~~~~~~~~G~~~~-~~~l~~~l~~~ 119 (149)
T 3gix_A 88 QHMKVDYGSPDHTKFVGSFKT-KQDFIDLIEVI 119 (149)
T ss_dssp EEEEEECSSSCCSCEESCCSS-HHHHHHHHHHH
T ss_pred eEEEeecCCCCCCeEeeecCC-HHHHHHHHHHH
Confidence 855 5778 555 44788887764
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=111.16 Aligned_cols=87 Identities=14% Similarity=0.350 Sum_probs=71.9
Q ss_pred EEEccH-HHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 194 IELITR-VMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 194 v~~l~~-~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
+..++. ++|++++++ +++++|.||++||++|+.+.|.++++++.++..++.++.+ .+++++++|+|+++||++
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 81 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI 81 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence 445665 899998875 7899999999999999999999999999964336888888 578899999999999999
Q ss_pred EEeCCeEEE-eecCc
Q psy160 267 YFRNGNPLI-FEGEN 280 (346)
Q Consensus 267 ~~~~g~~~~-y~g~~ 280 (346)
+|++|+.+. +.|..
T Consensus 82 ~~~~G~~~~~~~G~~ 96 (112)
T 3d6i_A 82 IIHKGTILKELSGAD 96 (112)
T ss_dssp EEETTEEEEEECSCC
T ss_pred EEECCEEEEEecCCC
Confidence 999998654 66764
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=112.07 Aligned_cols=90 Identities=20% Similarity=0.322 Sum_probs=78.7
Q ss_pred cCcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 191 EDRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
++.+..++.++|++. ++++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .+.+++++|+|.++|+++
T Consensus 12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 90 (119)
T 1w4v_A 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDHTDLAIEYEVSAVPTVL 90 (119)
T ss_dssp CSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred ceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcccEEE
Confidence 457888999999885 56788999999999999999999999999999876 6888888 577899999999999999
Q ss_pred EEeCCeEE-EeecCcc
Q psy160 267 YFRNGNPL-IFEGENK 281 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~~ 281 (346)
+|++|+.+ .+.|..+
T Consensus 91 ~~~~G~~~~~~~G~~~ 106 (119)
T 1w4v_A 91 AMKNGDVVDKFVGIKD 106 (119)
T ss_dssp EEETTEEEEEEESCCC
T ss_pred EEeCCcEEEEEcCCCC
Confidence 99999854 5777764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=132.82 Aligned_cols=102 Identities=20% Similarity=0.371 Sum_probs=88.3
Q ss_pred cCceeecCHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 86 KNEIEEVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.+.|.++|.++|++++.. +++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+| ++.++++|+|.++||+
T Consensus 6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 84 (287)
T 3qou_A 6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRAIPTV 84 (287)
T ss_dssp CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence 347999999999998865 68999999999999999999999999999865 37777765 7899999999999999
Q ss_pred EEEecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 161 VYFRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 161 ~~~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
++|++|+.+ .|.|..+.+ .+.+|+....
T Consensus 85 ~~~~~G~~~~~~~g~~~~~-~l~~~l~~~l 113 (287)
T 3qou_A 85 YLFQNGQPVDGFQGPQPEE-AIRALLDXVL 113 (287)
T ss_dssp EEEETTEEEEEEESCCCHH-HHHHHHHHHS
T ss_pred EEEECCEEEEEeeCCCCHH-HHHHHHHHHc
Confidence 999999854 588988744 8999998765
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=109.74 Aligned_cols=88 Identities=14% Similarity=0.370 Sum_probs=77.0
Q ss_pred ccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 190 TEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
.++....++.++|+++++++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|.++||++
T Consensus 7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 84 (112)
T 1syr_A 7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPTFK 84 (112)
T ss_dssp --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence 45677889999999999999999999999999999999999999999986 4778877 577899999999999999
Q ss_pred EEeCCeEE-EeecC
Q psy160 267 YFRNGNPL-IFEGE 279 (346)
Q Consensus 267 ~~~~g~~~-~y~g~ 279 (346)
++++|+.+ .+.|.
T Consensus 85 ~~~~G~~~~~~~G~ 98 (112)
T 1syr_A 85 VYKNGSSVDTLLGA 98 (112)
T ss_dssp EEETTEEEEEEESC
T ss_pred EEECCcEEEEEeCC
Confidence 99999864 46676
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=116.94 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=70.0
Q ss_pred EccHHHHHHHH--hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMV--EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~--~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
..+.++|++.+ +++++++|.|||+||++|+.+.|.++++++++.+ .+.++.+ .+++++++|+|.++||++++++
T Consensus 8 i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 86 (149)
T 3gix_A 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN 86 (149)
T ss_dssp ECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT-TEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred cCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence 45778999876 4588999999999999999999999999999985 5888888 6789999999999999999999
Q ss_pred CeEE
Q psy160 271 GNPL 274 (346)
Q Consensus 271 g~~~ 274 (346)
|+.+
T Consensus 87 G~~v 90 (149)
T 3gix_A 87 GQHM 90 (149)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 9876
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=108.55 Aligned_cols=86 Identities=17% Similarity=0.471 Sum_probs=76.0
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
|..++.++|++.++++++++|.||++||++|+.+.|.++++++.+.+ +.++.+ .+++++++|+++++|++++|++
T Consensus 1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 78 (104)
T 2e0q_A 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78 (104)
T ss_dssp CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence 35788899999888889999999999999999999999999999874 778877 5788999999999999999999
Q ss_pred CeEE-EeecCcc
Q psy160 271 GNPL-IFEGENK 281 (346)
Q Consensus 271 g~~~-~y~g~~~ 281 (346)
|+.+ .+.|..+
T Consensus 79 g~~~~~~~g~~~ 90 (104)
T 2e0q_A 79 GEPVDEIIGAVP 90 (104)
T ss_dssp TEEEEEEESCCC
T ss_pred CeEhhhccCCCC
Confidence 9864 5778765
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=112.81 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=70.8
Q ss_pred cEEEccHHHHHHHH-hccc--eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEe
Q psy160 193 RIELITRVMLETMV-EETQ--YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 193 ~v~~l~~~~~~~~~-~~~~--~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.+..++.++|.+.+ ++++ +++|.||++||++|+.+.|.++++|+++. ++.|++++-.+.+++|+|++.||+++|+
T Consensus 4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~~~~~~v~~~PT~~~fk 81 (118)
T 3evi_A 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSCIQHYHDNCLPTIFVYK 81 (118)
T ss_dssp SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGTSTTCCGGGCSEEEEEE
T ss_pred ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHhHHHCCCCCCCEEEEEE
Confidence 45677889998854 4444 89999999999999999999999999986 5899999444457899999999999999
Q ss_pred CCeEEE-eecCc
Q psy160 270 NGNPLI-FEGEN 280 (346)
Q Consensus 270 ~g~~~~-y~g~~ 280 (346)
+|+.+. +.|..
T Consensus 82 ~G~~v~~~~G~~ 93 (118)
T 3evi_A 82 NGQIEAKFIGII 93 (118)
T ss_dssp TTEEEEEEESTT
T ss_pred CCEEEEEEeChh
Confidence 998654 45543
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=110.81 Aligned_cols=89 Identities=24% Similarity=0.457 Sum_probs=77.0
Q ss_pred CcEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 192 DRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 192 ~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
..+..++.+++++ +++++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+ .+++++++|+|.++||+++
T Consensus 5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 83 (112)
T 1t00_A 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTAAKYGVMSIPTLNV 83 (112)
T ss_dssp CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCCHHHHHhCCCCcccEEEE
Confidence 3567889999977 456788999999999999999999999999999875 6888888 5788999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
+++|+.+ .+.|..+
T Consensus 84 ~~~G~~~~~~~G~~~ 98 (112)
T 1t00_A 84 YQGGEVAKTIVGAKP 98 (112)
T ss_dssp EETTEEEEEEESCCC
T ss_pred EeCCEEEEEEeCCCC
Confidence 9999864 4778765
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=117.73 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=79.9
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCCh--------------hHHHHHHHHHHHHhhccCCCcEEEEeC---Chhh
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHK--------------DSVKVLERLEKIDGETDNMDITFVKMA---DPRY 148 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~--------------~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l 148 (346)
+.+.+++.++|++.+ +++++++|.||++||+ +|+.+.|.++++++.+.+ ++.++.+| ++.+
T Consensus 3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~~~l 81 (123)
T 1oaz_A 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGT 81 (123)
T ss_dssp CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSCTTT
T ss_pred CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHH
Confidence 468889999998654 5678999999999999 999999999999988754 37777765 6789
Q ss_pred HHhhCCCCcceEEEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 149 ARKWGVTKLPAVVYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++|+|+++||+++|++|+. ..+.|..+.+ ++.+|+++.
T Consensus 82 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~-~l~~~l~~~ 121 (123)
T 1oaz_A 82 APKYGIRGIPTLLLFKNGEVAATKVGALSKG-QLKEFLDAN 121 (123)
T ss_dssp GGGGTCCBSSEEEEEESSSEEEEEESCCCHH-HHHHHHTTT
T ss_pred HHHcCCCccCEEEEEECCEEEEEEeCCCCHH-HHHHHHHHH
Confidence 99999999999999998984 4588988744 899998764
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=117.49 Aligned_cols=97 Identities=12% Similarity=0.302 Sum_probs=78.8
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
+..++.+.++....++++++|.||++||++|+++.|.++++++.+.+ ++.++.++ ++.++++|+|.++||+++|++
T Consensus 27 ~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 105 (128)
T 3ul3_B 27 LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNESLARKFSVKSLPTIILLKN 105 (128)
T ss_dssp CCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEET
T ss_pred cccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCCcCEEEEEEC
Confidence 33444444555556778999999999999999999999999998853 37777665 779999999999999999988
Q ss_pred CC-cceecCCcchhHHHHHHHhh
Q psy160 166 RF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 166 g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
|+ ...+.|..+.+ ++.+|+++
T Consensus 106 G~~~~~~~G~~~~~-~l~~~l~~ 127 (128)
T 3ul3_B 106 KTMLARKDHFVSSN-DLIALIKK 127 (128)
T ss_dssp TEEEEEESSCCCHH-HHHHHHTT
T ss_pred CEEEEEecCCCCHH-HHHHHHHh
Confidence 88 44588888744 89999875
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-15 Score=117.49 Aligned_cols=91 Identities=16% Similarity=0.306 Sum_probs=78.6
Q ss_pred cCcEEEccHHHHHHHHhccc--eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc-----
Q psy160 191 EDRIELITRVMLETMVEETQ--YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK----- 260 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~--~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~----- 260 (346)
+..+..++.++|++.+..++ +++|.||++||++|+.+.|.|+++++++.+.++.++.+ .+++++++|+|+
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT 85 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence 45678899999999876544 89999999999999999999999999997546899988 678899999999
Q ss_pred -cccEEEEEeCCeEE-EeecCcc
Q psy160 261 -TFPALVYFRNGNPL-IFEGENK 281 (346)
Q Consensus 261 -~~Pti~~~~~g~~~-~y~g~~~ 281 (346)
++||+++|++|+.+ .+.|..+
T Consensus 86 ~~~Pt~~~~~~G~~~~~~~G~~~ 108 (137)
T 2dj0_A 86 KQLPTLILFQGGKEAMRRPQIDK 108 (137)
T ss_dssp SCSSEEEEESSSSEEEEESCBCS
T ss_pred CCCCEEEEEECCEEEEEecCcCc
Confidence 99999999999864 4677665
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-15 Score=115.35 Aligned_cols=91 Identities=20% Similarity=0.401 Sum_probs=78.8
Q ss_pred cCcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcC----cCceEEEEE---cChhhhhhCCCccc
Q psy160 191 EDRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECD----IYGIHMVKI---QDPQLAKRYSIKTF 262 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~----~~~i~~~~i---~~~~~~~~~~i~~~ 262 (346)
+..+..++.++|++.+ +++++++|.||++||++|+.+.|.+.++++.+. + ++.++.+ .+.+++++|+|+++
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~ 84 (133)
T 1x5d_A 6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG-KVKLAAVDATVNQVLASRYGIRGF 84 (133)
T ss_dssp CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT-SEEEEEEETTTCCHHHHHHTCCSS
T ss_pred CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC-cEEEEEEECCCCHHHHHhCCCCee
Confidence 3467789999999864 678899999999999999999999999999986 4 6889888 57789999999999
Q ss_pred cEEEEEeCCeE-EEeecCccc
Q psy160 263 PALVYFRNGNP-LIFEGENKI 282 (346)
Q Consensus 263 Pti~~~~~g~~-~~y~g~~~~ 282 (346)
||+++|++|+. ..|.|.++.
T Consensus 85 Pt~~~~~~g~~~~~~~G~~~~ 105 (133)
T 1x5d_A 85 PTIKIFQKGESPVDYDGGRTR 105 (133)
T ss_dssp SEEEEEETTEEEEEECSCCSH
T ss_pred CeEEEEeCCCceEEecCCCCH
Confidence 99999999974 568887653
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=109.59 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=78.0
Q ss_pred CcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 192 DRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 192 ~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+.+..++.++|++. ++.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++|++++
T Consensus 7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence 35778999999976 56788999999999999999999999999999886 6888888 5788999999999999999
Q ss_pred EeCCeEE-EeecCcc
Q psy160 268 FRNGNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~ 281 (346)
|++|+.+ .+.|..+
T Consensus 86 ~~~G~~~~~~~g~~~ 100 (115)
T 1thx_A 86 VKGEQILDSTEGVIS 100 (115)
T ss_dssp EETTEEEEEEESCCC
T ss_pred EcCCEEEEEecCCCC
Confidence 9999865 4778765
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=108.54 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=71.7
Q ss_pred EccHHHHHHHH--hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMV--EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~--~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
..+.++|++.+ .++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++||+++|++
T Consensus 6 i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 83 (107)
T 1gh2_A 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPTFQFFRN 83 (107)
T ss_dssp ECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEEEEET
T ss_pred ecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHhcCCCcccEEEEEEC
Confidence 44678999987 468899999999999999999999999999984 6888888 5788999999999999999999
Q ss_pred CeEE-EeecCc
Q psy160 271 GNPL-IFEGEN 280 (346)
Q Consensus 271 g~~~-~y~g~~ 280 (346)
|+.+ .+.|..
T Consensus 84 G~~~~~~~G~~ 94 (107)
T 1gh2_A 84 KVRIDQYQGAD 94 (107)
T ss_dssp TEEEEEEESSC
T ss_pred CeEEEEEeCCC
Confidence 9865 467743
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-15 Score=114.82 Aligned_cols=102 Identities=21% Similarity=0.499 Sum_probs=84.9
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---cChhhhhhCCCccccEE
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
++.+..++.++|+++++++++++|.||++||++|+.+.|.+.++++.+.+ .++.++.+ .++.++++|+|+++||+
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 85 (120)
T 1mek_A 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI 85 (120)
T ss_dssp ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence 35678899999999988899999999999999999999999999999863 25778888 56789999999999999
Q ss_pred EEEeCCeE---EEeecCccccccchhhhhhhcc
Q psy160 266 VYFRNGNP---LIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 266 ~~~~~g~~---~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|++|+. ..|.|..+.+. +..+++..
T Consensus 86 ~~~~~g~~~~~~~~~g~~~~~~---l~~~l~~~ 115 (120)
T 1mek_A 86 KFFRNGDTASPKEYTAGREADD---IVNWLKKR 115 (120)
T ss_dssp EEEESSCSSSCEECCCCSSHHH---HHHHHHTT
T ss_pred EEEeCCCcCCcccccCccCHHH---HHHHHHhc
Confidence 99999974 57888765332 55666543
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=108.98 Aligned_cols=99 Identities=9% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceeec-CHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.+..+ +.++|++.+.. +++++|.||++||++|+.+.|.++++++.+. ++.++.++ ++.++++|+|.++||
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt 84 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKDVAEAYNVEAMPT 84 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence 56677 68999998875 7899999999999999999999999999876 46666664 678999999999999
Q ss_pred EEEEecCCcc-eecCCcchhHHHHHHHhhccc
Q psy160 160 VVYFRHRFPS-IYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 160 l~~~~~g~~~-~y~g~~~~~~~i~~fi~~~~~ 190 (346)
+++|++|+.. .+.|. + .+++.+++.+...
T Consensus 85 ~~~~~~g~~~~~~~g~-~-~~~l~~~l~~~~~ 114 (118)
T 2vm1_A 85 FLFIKDGEKVDSVVGG-R-KDDIHTKIVALMG 114 (118)
T ss_dssp EEEEETTEEEEEEESC-C-HHHHHHHHHHHHC
T ss_pred EEEEeCCeEEEEecCC-C-HHHHHHHHHHHhc
Confidence 9999988843 46774 4 4488888877543
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=109.10 Aligned_cols=97 Identities=11% Similarity=0.230 Sum_probs=80.3
Q ss_pred ceeec-CHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.+..+ +.++|++.+.. +++++|.||++||++|+.+.|.+.++++.+. ++.++.++ ++.++++|+|.++||
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt 82 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMPT 82 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccccHHHHHhCCCCcccE
Confidence 56666 68999998875 6899999999999999999999999999875 47777665 678999999999999
Q ss_pred EEEEecCCcc-eecCCcchhHHHHHHHhhc
Q psy160 160 VVYFRHRFPS-IYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~~-~y~g~~~~~~~i~~fi~~~ 188 (346)
+++|++|+.. .+.| .+ .+++.+++.+.
T Consensus 83 ~~~~~~G~~~~~~~g-~~-~~~l~~~l~~~ 110 (113)
T 1ti3_A 83 FIFLKDGKLVDKTVG-AD-KDGLPTLVAKH 110 (113)
T ss_dssp EEEEETTEEEEEEEC-CC-TTHHHHHHHHH
T ss_pred EEEEeCCEEEEEEec-CC-HHHHHHHHHHh
Confidence 9999988843 4677 44 33788888764
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=114.39 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=77.0
Q ss_pred cEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.+..++.++|++. ++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||+++|
T Consensus 23 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 101 (128)
T 2o8v_B 23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 101 (128)
T ss_dssp CSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred ccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence 4668899999864 57789999999999999999999999999999986 6888888 57789999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 102 ~~G~~~~~~~G~~~ 115 (128)
T 2o8v_B 102 KNGEVAATKVGALS 115 (128)
T ss_dssp ETTEEEEEEESCCC
T ss_pred eCCEEEEEEcCCCC
Confidence 999854 4778765
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=124.08 Aligned_cols=108 Identities=18% Similarity=0.357 Sum_probs=88.8
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
...+..++.++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+ .+++++++|+|.++||+++
T Consensus 96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 174 (210)
T 3apq_A 96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDDRMLCRMKGVNSYPSLFI 174 (210)
T ss_dssp CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCccHHHHHHcCCCcCCeEEE
Confidence 45677899999999888899999999999999999999999999999986 6889888 6788999999999999999
Q ss_pred EeCCe-EEEeecCccccccchhhhhhhccCCCCCCc
Q psy160 268 FRNGN-PLIFEGENKILKGTYIGTYISTKAFSLIPF 302 (346)
Q Consensus 268 ~~~g~-~~~y~g~~~~~~~~~~~~~i~~~~~~~~~~ 302 (346)
|++|+ ...|.|.++.+. +..++.....+.+.+
T Consensus 175 ~~~G~~~~~~~G~~~~~~---l~~~i~~~l~~~~~~ 207 (210)
T 3apq_A 175 FRSGMAAVKYNGDRSKES---LVAFAMQHVRSTVTE 207 (210)
T ss_dssp ECTTSCCEECCSCCCHHH---HHHHHHHHHHCCSSC
T ss_pred EECCCceeEecCCCCHHH---HHHHHHHhCccccee
Confidence 99997 456888765332 556665543333333
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=112.45 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=74.5
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-------ChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-------DPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-------~~~~~~~~~i~~~Pti 265 (346)
.+..++.+++++.++++++++|.||++||++|+.+.|.++++++.+.. .+.++.+. ..+++++|+|.++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~ 91 (118)
T 1zma_A 13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVPGF 91 (118)
T ss_dssp TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred hhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEECCCcCcHHHHHHHHHHcCCCCCCeE
Confidence 456789999999888889999999999999999999999999998764 67777652 2468899999999999
Q ss_pred EEEeCCeEE-EeecCcc
Q psy160 266 VYFRNGNPL-IFEGENK 281 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~~~ 281 (346)
++|++|+.+ .+.|..+
T Consensus 92 ~~~~~G~~~~~~~G~~~ 108 (118)
T 1zma_A 92 VHITDGQINVRCDSSMS 108 (118)
T ss_dssp EEEETTEEEEECCTTCC
T ss_pred EEEECCEEEEEecCCCC
Confidence 999999854 4677765
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=115.08 Aligned_cols=85 Identities=21% Similarity=0.472 Sum_probs=73.2
Q ss_pred cEEEc-cHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 193 RIELI-TRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
.+..+ +.++|++++++ +++++|.||++||++|+.+.|.++++++.+. ++.|+.+ .+++++++|+|.++|+++
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~ 90 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPEVSEKYEISSVPTFL 90 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence 34455 47999998887 8999999999999999999999999999975 6888888 578899999999999999
Q ss_pred EEeCCeEEE-eecC
Q psy160 267 YFRNGNPLI-FEGE 279 (346)
Q Consensus 267 ~~~~g~~~~-y~g~ 279 (346)
+|++|+.+. +.|.
T Consensus 91 ~~~~G~~~~~~~G~ 104 (153)
T 2wz9_A 91 FFKNSQKIDRLDGA 104 (153)
T ss_dssp EEETTEEEEEEESS
T ss_pred EEECCEEEEEEeCC
Confidence 999998754 5564
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=109.06 Aligned_cols=87 Identities=20% Similarity=0.417 Sum_probs=75.9
Q ss_pred EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++.++|++. .+++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||+++++
T Consensus 3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 81 (107)
T 1dby_A 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCCcCCEEEEEe
Confidence 567899999885 46788999999999999999999999999999876 6888888 578899999999999999999
Q ss_pred CCeEE-EeecCcc
Q psy160 270 NGNPL-IFEGENK 281 (346)
Q Consensus 270 ~g~~~-~y~g~~~ 281 (346)
+|+.+ .+.|..+
T Consensus 82 ~G~~~~~~~G~~~ 94 (107)
T 1dby_A 82 GGKKCETIIGAVP 94 (107)
T ss_dssp SSSEEEEEESCCC
T ss_pred CCEEEEEEeCCCC
Confidence 99754 4777765
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=108.44 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=73.9
Q ss_pred EEEc-cHHHHHHHHhc----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 194 IELI-TRVMLETMVEE----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 194 v~~l-~~~~~~~~~~~----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
+..+ +.++|++.+.. +++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|+++||+
T Consensus 4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 82 (112)
T 1ep7_A 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchHHHHHHcCCCcccEE
Confidence 4455 67899998765 78999999999999999999999999999886 7888888 57889999999999999
Q ss_pred EEEeCCeEE-EeecC
Q psy160 266 VYFRNGNPL-IFEGE 279 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~ 279 (346)
+++++|+.+ .+.|.
T Consensus 83 ~~~~~G~~~~~~~G~ 97 (112)
T 1ep7_A 83 HVYKDGVKADDLVGA 97 (112)
T ss_dssp EEEETTEEEEEEESC
T ss_pred EEEECCeEEEEEcCC
Confidence 999999854 46776
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=108.09 Aligned_cols=87 Identities=21% Similarity=0.438 Sum_probs=75.4
Q ss_pred EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++.++|++. .+++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|.++||+++++
T Consensus 2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 80 (105)
T 1fb6_A 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80 (105)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcchHHHHHhCCCCcccEEEEEe
Confidence 457888999885 45678999999999999999999999999999886 6888888 577899999999999999999
Q ss_pred CCeEE-EeecCcc
Q psy160 270 NGNPL-IFEGENK 281 (346)
Q Consensus 270 ~g~~~-~y~g~~~ 281 (346)
+|+.+ .+.|..+
T Consensus 81 ~g~~~~~~~G~~~ 93 (105)
T 1fb6_A 81 NGERKESIIGAVP 93 (105)
T ss_dssp TTEEEEEEEECCC
T ss_pred CCeEEEEEecCCC
Confidence 99865 4677765
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=109.01 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=80.4
Q ss_pred ceeec--CHHHHHH-HHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEE
Q psy160 88 EIEEV--NRRMLDK-LLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 88 ~v~~l--~~~~~~~-~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~ 161 (346)
.+..+ +.++|++ +..++++++|.||++||++|+.+.|.+.++++.+ .++.++.+| ++.++++|+|.++||++
T Consensus 4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 81 (118)
T 2f51_A 4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDKNGNAADAYGVSSIPALF 81 (118)
T ss_dssp CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence 46666 6889985 4456789999999999999999999999999987 347777765 77899999999999999
Q ss_pred EEec----CCc-ceecCCcchhHHHHHHHhhcccc
Q psy160 162 YFRH----RFP-SIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 162 ~~~~----g~~-~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+|.+ |+. ..+.|... . +|.+.+.+...+
T Consensus 82 ~~~~~~~~G~~~~~~~G~~~-~-~l~~~~~~~~~~ 114 (118)
T 2f51_A 82 FVKKEGNEIKTLDQFVGADV-S-RIKADIEKFKHH 114 (118)
T ss_dssp EEEEETTEEEEEEEEESCCH-H-HHHHHHHHHC--
T ss_pred EEeCCCCcceEEEeecCCCH-H-HHHHHHHHhhhc
Confidence 9987 763 45788775 4 688888776543
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=106.21 Aligned_cols=84 Identities=19% Similarity=0.439 Sum_probs=72.6
Q ss_pred EEEccH-HHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 194 IELITR-VMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~-~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+..++. +++++.++ ++++++|.||++||++|+.+.|.++++++.+++ ++.++.+ .+++++++|++.++||+++
T Consensus 2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 80 (106)
T 1xwb_A 2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFVF 80 (106)
T ss_dssp EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccchHHHHHHcCCCcccEEEE
Confidence 345655 88988776 688999999999999999999999999999864 7888888 5778999999999999999
Q ss_pred EeCCeEE-Eeec
Q psy160 268 FRNGNPL-IFEG 278 (346)
Q Consensus 268 ~~~g~~~-~y~g 278 (346)
+++|+.+ .+.|
T Consensus 81 ~~~G~~~~~~~g 92 (106)
T 1xwb_A 81 LKNGVKVEEFAG 92 (106)
T ss_dssp EETTEEEEEEES
T ss_pred EcCCcEEEEEcC
Confidence 9999854 4667
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-15 Score=117.73 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=73.1
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCC--ChhHHHHHHHHHHHHhhccCCCcE--EEEeC---ChhhHHhhCCCCcceE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETD--HKDSVKVLERLEKIDGETDNMDIT--FVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--C~~c~~~~~~~~~~a~~~~~~~i~--~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
.+..+++++|++++.+++.++|+|+++| |++|+.+.|.|+++++++ + ++. ++.+| +++++++|+|+++||+
T Consensus 18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~~~~la~~~~V~~iPT~ 95 (142)
T 2es7_A 18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQSEAIGDRFNVRRFPAT 95 (142)
T ss_dssp TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence 4678899999999988888999999877 999999999999999988 3 366 88887 6789999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHHHHhhcccc
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++|++|+ ..++.|..+.+ +|.+++.+...+
T Consensus 96 ~~fk~G~~v~~~~G~~~~~-~l~~~i~~~l~~ 126 (142)
T 2es7_A 96 LVFTDGKLRGALSGIHPWA-ELLTLMRSIVDT 126 (142)
T ss_dssp EEESCC----CEESCCCHH-HHHHHHHHHHC-
T ss_pred EEEeCCEEEEEEeCCCCHH-HHHHHHHHHhcc
Confidence 9999998 45688988744 899999887654
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=114.92 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=74.0
Q ss_pred CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 93 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 93 ~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+.++|++.+. ++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+| +++++++|+|.++||+++|++|+
T Consensus 10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~ 88 (142)
T 1qgv_A 10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK 88 (142)
T ss_dssp SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCHHHHHHcCCCCCCEEEEEECCc
Confidence 5788987665 478999999999999999999999999998844 37777665 67899999999999999999887
Q ss_pred cce----------ecCCcchhHHHHHHHhh
Q psy160 168 PSI----------YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 168 ~~~----------y~g~~~~~~~i~~fi~~ 187 (346)
.+. ..|.....+++.++++.
T Consensus 89 ~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~ 118 (142)
T 1qgv_A 89 HIMIDLGTGNNNKINWAMEDKQEMVDIIET 118 (142)
T ss_dssp EEEEECC------CCSCCSCHHHHHHHHHH
T ss_pred EEEEecCCCCcceeeeecCcHHHHHHHHHH
Confidence 543 33444323466666654
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=112.99 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=75.1
Q ss_pred cCcEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 191 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 191 ~~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
|+.+..++.++|++ +++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|+++||++
T Consensus 2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (122)
T 3aps_A 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVK 80 (122)
T ss_dssp CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence 45677899999965 677889999999999999999999999999999986 7889888 578899999999999999
Q ss_pred EEeCCe-EEEeecC
Q psy160 267 YFRNGN-PLIFEGE 279 (346)
Q Consensus 267 ~~~~g~-~~~y~g~ 279 (346)
+|++|. ...+.|.
T Consensus 81 ~~~~~~~~~~~~g~ 94 (122)
T 3aps_A 81 LYQYERAKKSIWEE 94 (122)
T ss_dssp EEEEEGGGTEEEEE
T ss_pred EEeCCCccceeecc
Confidence 997653 3345554
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=113.68 Aligned_cols=102 Identities=13% Similarity=0.178 Sum_probs=80.6
Q ss_pred ceeecCHHHHH-----HHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCc
Q psy160 88 EIEEVNRRMLD-----KLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-----DPRYARKWGVTKL 157 (346)
Q Consensus 88 ~v~~l~~~~~~-----~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~ 157 (346)
.+..++.++++ ....++++++|.||++||++|+.+.|.+.++++.+. .++.++.++ +..++++|+|.++
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~d~~~~~~~~~~v~~~ 83 (126)
T 2l57_A 5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEEKNIDLAYKYDANIV 83 (126)
T ss_dssp CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTSSHHHHHHHHTTCCSS
T ss_pred ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCchHHHHHHcCCcce
Confidence 34455555555 444567899999999999999999999999999885 236666554 6689999999999
Q ss_pred ceEEEEe-cCC-cceecCCcchhHHHHHHHhhcccc
Q psy160 158 PAVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 158 Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
||+++|. +|+ ...+.|..+.+ ++.+++.+...+
T Consensus 84 Pt~~~~~~~G~~~~~~~G~~~~~-~l~~~l~~~~~~ 118 (126)
T 2l57_A 84 PTTVFLDKEGNKFYVHQGLMRKN-NIETILNSLGVK 118 (126)
T ss_dssp SEEEEECTTCCEEEEEESCCCHH-HHHHHHHHHCCC
T ss_pred eEEEEECCCCCEEEEecCCCCHH-HHHHHHHHHhcc
Confidence 9999999 787 44588988744 899999887654
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=111.55 Aligned_cols=83 Identities=17% Similarity=0.376 Sum_probs=73.7
Q ss_pred EEEccH-HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITR-VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~-~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++. ++|+++++.+++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|.++||+++|+
T Consensus 21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~ 98 (125)
T 1r26_A 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98 (125)
T ss_dssp CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence 556776 9999988888999999999999999999999999999985 5888888 578899999999999999999
Q ss_pred CCeEE-Eeec
Q psy160 270 NGNPL-IFEG 278 (346)
Q Consensus 270 ~g~~~-~y~g 278 (346)
+|+.+ .+.|
T Consensus 99 ~G~~~~~~~G 108 (125)
T 1r26_A 99 SGKMLGHVIG 108 (125)
T ss_dssp TTEEEEEEES
T ss_pred CCeEEEEEeC
Confidence 99865 4677
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-15 Score=115.30 Aligned_cols=90 Identities=17% Similarity=0.333 Sum_probs=78.3
Q ss_pred CcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 192 DRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 192 ~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+.+..++.++|++. .+++++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .+.+++++|+|+++||+++
T Consensus 17 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 95 (130)
T 2dml_A 17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD-VVKVGAVNADKHQSLGGQYGVQGFPTIKI 95 (130)
T ss_dssp SSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred CCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHcCCCccCEEEE
Confidence 46778999999984 56788999999999999999999999999999886 6888888 5788999999999999999
Q ss_pred EeCCe--EEEeecCccc
Q psy160 268 FRNGN--PLIFEGENKI 282 (346)
Q Consensus 268 ~~~g~--~~~y~g~~~~ 282 (346)
|++|. ...|.|.++.
T Consensus 96 ~~~~~~~~~~~~G~~~~ 112 (130)
T 2dml_A 96 FGANKNKPEDYQGGRTG 112 (130)
T ss_dssp ESSCTTSCEECCSCCSH
T ss_pred EeCCCCeEEEeecCCCH
Confidence 98765 5678887753
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=109.34 Aligned_cols=99 Identities=19% Similarity=0.416 Sum_probs=81.8
Q ss_pred cCcEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 191 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 191 ~~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
...+..++.+++.+ +++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .++.++++|+|.++||++
T Consensus 11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~ 89 (121)
T 2i1u_A 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTNPETARNFQVVSIPTLI 89 (121)
T ss_dssp -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence 34667889999987 466788999999999999999999999999999875 6888888 578899999999999999
Q ss_pred EEeCCeEE-EeecCccccccchhhhhhh
Q psy160 267 YFRNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|++|+.+ .+.|..+.+. +..+++
T Consensus 90 ~~~~g~~~~~~~G~~~~~~---l~~~l~ 114 (121)
T 2i1u_A 90 LFKDGQPVKRIVGAKGKAA---LLRELS 114 (121)
T ss_dssp EEETTEEEEEEESCCCHHH---HHHHTC
T ss_pred EEECCEEEEEecCCCCHHH---HHHHHH
Confidence 99999864 5778765332 555554
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=108.68 Aligned_cols=88 Identities=14% Similarity=0.300 Sum_probs=75.2
Q ss_pred cCcEEEccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----cChhhhhhCCCccccE
Q psy160 191 EDRIELITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pt 264 (346)
.+.+..++.++|++.+. .+++++|.||++||++|+.+.|.+.++++.+. ++.++.+ .+.+++++|+|+++||
T Consensus 4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~~v~~~Pt 81 (111)
T 2pu9_C 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPT 81 (111)
T ss_dssp TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCcchHHHHHHcCCCeeeE
Confidence 34677899999999876 47899999999999999999999999999987 4777777 3578999999999999
Q ss_pred EEEEeCCeEE-EeecCc
Q psy160 265 LVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 265 i~~~~~g~~~-~y~g~~ 280 (346)
++++++|+.+ .+.|..
T Consensus 82 ~~~~~~G~~~~~~~G~~ 98 (111)
T 2pu9_C 82 FKILKENSVVGEVTGAK 98 (111)
T ss_dssp EEEESSSSEEEEEESSC
T ss_pred EEEEeCCcEEEEEcCCC
Confidence 9999999865 466653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=129.40 Aligned_cols=100 Identities=21% Similarity=0.396 Sum_probs=84.5
Q ss_pred cCcEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 191 EDRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
.+.|..+|.++|+++++. +++++|.||++||++|+.+.|.++++++++.+ ++.|+.+ .+++++++|+|+++||+
T Consensus 6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 84 (287)
T 3qou_A 6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRAIPTV 84 (287)
T ss_dssp CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence 346789999999998764 78999999999999999999999999999986 6889988 67899999999999999
Q ss_pred EEEeCCeEE-EeecCccccccchhhhhhhc
Q psy160 266 VYFRNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|++|+.+ .|.|..+.+. +..++..
T Consensus 85 ~~~~~G~~~~~~~g~~~~~~---l~~~l~~ 111 (287)
T 3qou_A 85 YLFQNGQPVDGFQGPQPEEA---IRALLDX 111 (287)
T ss_dssp EEEETTEEEEEEESCCCHHH---HHHHHHH
T ss_pred EEEECCEEEEEeeCCCCHHH---HHHHHHH
Confidence 999999865 4788765322 4455543
|
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=114.72 Aligned_cols=211 Identities=9% Similarity=0.070 Sum_probs=150.4
Q ss_pred ceeecC-HHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEec
Q psy160 88 EIEEVN-RRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 88 ~v~~l~-~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.+.+|+ .+++++++.+ ++.++|.|++++|. ...+.|.++|+.++.. +.|+.+.+.+++.+++++. |+|++|+.
T Consensus 7 ~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~---~~~~~F~~~A~~lr~~-~~F~~t~~~~v~~~~~v~~-p~ivlfk~ 81 (250)
T 3ec3_A 7 PSKEILTLKQVQEFLKDGDDVVILGVFQGVGD---PGYLQYQDAANTLRED-YKFHHTFSTEIAKFLKVSL-GKLVLMQP 81 (250)
T ss_dssp SSEECCCHHHHHHHHHHCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT-CCEEEECCHHHHHHHTCCS-SEEEEECC
T ss_pred CceecCCHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHHHHHHhhhcC-cEEEEECcHHHHHHcCCCC-CeEEEEec
Confidence 788885 5899999988 89999999998754 6788999999998553 8899999999999999987 99999985
Q ss_pred --------CCcceecC--CcchhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEEEEEcC-CC---h-hhHHHHHH
Q psy160 166 --------RFPSIYRG--DLSEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-NC---N-ICDQILEG 230 (346)
Q Consensus 166 --------g~~~~y~g--~~~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~-~c---~-~c~~~~~~ 230 (346)
.....|+| .++ .++|.+|+..+..| .+..++.+++..+.. .++.++.|+.+ .+ . ........
T Consensus 82 ~~~~~kfde~~~~y~g~~~~~-~~~l~~fi~~~~~P-lv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~~ 158 (250)
T 3ec3_A 82 EKFQSKYEPRMHVMDVQGSTE-ASAIKDYVVKHALP-LVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRNK 158 (250)
T ss_dssp GGGCCTTSCSCEEEECCTTSC-HHHHHHHHHHHSSC-TEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHHH
T ss_pred chhhccccccceeccCCCCCC-HHHHHHHHHHcCCC-ceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHHHH
Confidence 33677885 666 44899999999887 777999999988764 66777777753 22 2 23557899
Q ss_pred HHHHHhhcCcCceEEEEE---cChhhhhhCCCcc--c-cEEEEEeC-CeEEEee-cCccccccchhhhhhhcc-CCCCCC
Q psy160 231 LEKVDDECDIYGIHMVKI---QDPQLAKRYSIKT--F-PALVYFRN-GNPLIFE-GENKILKGTYIGTYISTK-AFSLIP 301 (346)
Q Consensus 231 ~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~--~-Pti~~~~~-g~~~~y~-g~~~~~~~~~~~~~i~~~-~~~~~~ 301 (346)
+.++|++++ ++.|+.+ ......+.||+.. . |.++++.. ++...+. +..+. ..|..|++.- ...+-|
T Consensus 159 ~~~vAk~~k--ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t~---~~i~~Fv~~~~~Gkl~p 233 (250)
T 3ec3_A 159 VLEVAKDFP--EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDS---DALREFVMAFKKGKLKP 233 (250)
T ss_dssp HHHHHTTCT--TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCCH---HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhhc--ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCceecCCcccCCH---HHHHHHHHHHHCCCccc
Confidence 999999998 6888888 3455678889863 4 46766643 3333344 33432 2266666643 334556
Q ss_pred cccCCCCCCc
Q psy160 302 FCFSEKHPGA 311 (346)
Q Consensus 302 ~~~~~~~~~~ 311 (346)
.+-++..|+.
T Consensus 234 ~~kSepiPe~ 243 (250)
T 3ec3_A 234 VIKSQPVPKN 243 (250)
T ss_dssp CC--------
T ss_pred eeecCCCCCC
Confidence 6666666654
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-14 Score=105.17 Aligned_cols=82 Identities=15% Similarity=0.406 Sum_probs=71.8
Q ss_pred EccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
..+.+++++.++ ++++++|.||++||++|+.+.|.++++++.+.+ +.++.+ .+++++++|+|+++||+++|++
T Consensus 5 i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (105)
T 3m9j_A 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82 (105)
T ss_dssp CCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred cCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhhhHHHHHHcCCCcCcEEEEEEC
Confidence 346788998877 688999999999999999999999999999874 788887 6789999999999999999999
Q ss_pred CeEE-EeecC
Q psy160 271 GNPL-IFEGE 279 (346)
Q Consensus 271 g~~~-~y~g~ 279 (346)
|+.+ .+.|.
T Consensus 83 g~~~~~~~g~ 92 (105)
T 3m9j_A 83 GQKVGEFSGA 92 (105)
T ss_dssp TEEEEEEESS
T ss_pred CeEEEEEeCC
Confidence 9865 46676
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=112.32 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=81.1
Q ss_pred cCceeecCHHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.+.+++.++|++.+.+. ++++|.||++||++|+.+.|.|+++++.+. ++.|+.+|..+..++|+|.++||+++
T Consensus 9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCIEHYHDNCLPTIFV 86 (135)
T ss_dssp CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSCSSCCSSCCSEEEE
T ss_pred CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCcccCCCCCCCEEEE
Confidence 3478889999999988653 579999999999999999999999999874 48888887544458999999999999
Q ss_pred EecCCc-ceecCCc------chhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDL------SEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~------~~~~~i~~fi~~~ 188 (346)
|++|+. ..+.|.. ...+.|..++.+.
T Consensus 87 ~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 87 YKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp ESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 999984 3466653 1244788887765
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=108.05 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=71.8
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeE
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.+.++++++++++++++|.||++||++|+.+.|.++++++++.+ +.++.+ .+++++++|+|.++||++++++|+.
T Consensus 18 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 95 (114)
T 2oe3_A 18 TNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQL 95 (114)
T ss_dssp CSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEE
T ss_pred CCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCcccEEEEEeCCeE
Confidence 35677888888899999999999999999999999999999874 778877 5778999999999999999999986
Q ss_pred E-EeecCc
Q psy160 274 L-IFEGEN 280 (346)
Q Consensus 274 ~-~y~g~~ 280 (346)
+ .+.|..
T Consensus 96 ~~~~~G~~ 103 (114)
T 2oe3_A 96 IGKIIGAN 103 (114)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 4 467765
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=122.62 Aligned_cols=91 Identities=26% Similarity=0.449 Sum_probs=80.2
Q ss_pred cCcEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 191 EDRIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 191 ~~~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
...+..+|.++|++ +++++++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ .+++++++|+|.++||++
T Consensus 11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 89 (222)
T 3dxb_A 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLL 89 (222)
T ss_dssp SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCTTTGGGGTCCSBSEEE
T ss_pred CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 35677899999988 577889999999999999999999999999999986 6888888 677899999999999999
Q ss_pred EEeCCeEE-EeecCccc
Q psy160 267 YFRNGNPL-IFEGENKI 282 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~~~ 282 (346)
+|++|+.+ .+.|..+.
T Consensus 90 ~~~~G~~~~~~~G~~~~ 106 (222)
T 3dxb_A 90 LFKNGEVAATKVGALSK 106 (222)
T ss_dssp EEETTEEEEEEESCCCH
T ss_pred EEECCeEEEEeccccCh
Confidence 99999865 67887653
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-14 Score=107.95 Aligned_cols=88 Identities=13% Similarity=0.296 Sum_probs=76.0
Q ss_pred cCcEEEccHHHHHHHHh----ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcccc
Q psy160 191 EDRIELITRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFP 263 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~----~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~P 263 (346)
.+.+..++.++|++.+. .+++++|.||++||++|+.+.|.++++++.+.+ +.++.+ .+++++++|+|+++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~~P 89 (122)
T 2vlu_A 12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDELKPIAEQFSVEAMP 89 (122)
T ss_dssp CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSSS
T ss_pred CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCCCHHHHHHcCCCccc
Confidence 34677889999998765 478999999999999999999999999999874 778887 578899999999999
Q ss_pred EEEEEeCCeEE-EeecCc
Q psy160 264 ALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 264 ti~~~~~g~~~-~y~g~~ 280 (346)
|++++++|+.+ .+.|..
T Consensus 90 t~~~~~~G~~~~~~~G~~ 107 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI 107 (122)
T ss_dssp EEEEEETTEEEEEEESSC
T ss_pred EEEEEeCCEEEEEEeCcC
Confidence 99999999864 477766
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-14 Score=110.63 Aligned_cols=98 Identities=11% Similarity=0.227 Sum_probs=80.2
Q ss_pred ceeec-CHHHHHHHHh----cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~----~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.+..+ +.++|++.+. ++++++|.||++||++|+.+.|.++++++.+.+ +.++.+| ++.++++|+|.++||
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~Pt 102 (139)
T 3d22_A 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS--LMFLVIDVDELSDFSASWEIKATPT 102 (139)
T ss_dssp TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTSHHHHHHTTCCEESE
T ss_pred cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEeCcccHHHHHHcCCCcccE
Confidence 45555 5899998874 478999999999999999999999999998743 6666664 778999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
++++++|+. ..+.|. + .+++.+++.+..
T Consensus 103 ~~~~~~G~~~~~~~G~-~-~~~l~~~l~~~~ 131 (139)
T 3d22_A 103 FFFLRDGQQVDKLVGA-N-KPELHKKITAIL 131 (139)
T ss_dssp EEEEETTEEEEEEESC-C-HHHHHHHHHHHH
T ss_pred EEEEcCCeEEEEEeCC-C-HHHHHHHHHHHh
Confidence 999988884 457787 4 447888887654
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=107.68 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=71.3
Q ss_pred EEEccH-HHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 194 IELITR-VMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l~~-~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+..++. +++++.++ .+++++|.||++||++|+.+.|.++++++.+ ++.++.+ .+++++++|+|+++||+++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 91 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKLEETARKYNISAMPTFIA 91 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCccHHHHHHcCCCccceEEE
Confidence 667776 89999877 6889999999999999999999999999887 5777777 5778999999999999999
Q ss_pred EeCCeEE-Eeec
Q psy160 268 FRNGNPL-IFEG 278 (346)
Q Consensus 268 ~~~g~~~-~y~g 278 (346)
+++|+.+ .+.|
T Consensus 92 ~~~G~~~~~~~G 103 (117)
T 2xc2_A 92 IKNGEKVGDVVG 103 (117)
T ss_dssp EETTEEEEEEES
T ss_pred EeCCcEEEEEeC
Confidence 9999865 4667
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=108.12 Aligned_cols=95 Identities=20% Similarity=0.391 Sum_probs=76.7
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
+..++.++| +.+.++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|.++||+++|++
T Consensus 5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 81 (110)
T 2l6c_A 5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFERVPTLVFIRD 81 (110)
T ss_dssp SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence 446778889 666777899999999999999999999999999876 5677776 6788999999999999999999
Q ss_pred CeEE-EeecCccccccchhhhhhhc
Q psy160 271 GNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 271 g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
|+.+ ++.|..+.+. +..++..
T Consensus 82 G~~v~~~~G~~~~~~---l~~~~~~ 103 (110)
T 2l6c_A 82 GKVAKVFSGIMNPRE---LQALYAS 103 (110)
T ss_dssp SSEEEEEESCCCHHH---HHHHHHT
T ss_pred CEEEEEEcCCCCHHH---HHHHHHH
Confidence 9864 5778665332 5455443
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=103.98 Aligned_cols=81 Identities=23% Similarity=0.570 Sum_probs=70.1
Q ss_pred EccH-HHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 196 LITR-VMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 196 ~l~~-~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
.++. +++++.++ ++++++|.||++||++|+.+.|.+.++++.+. ++.++.+ .+++++++|+|.++||+++++
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 80 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence 4444 88998877 68899999999999999999999999999986 5778877 578899999999999999999
Q ss_pred CCeEEE-eec
Q psy160 270 NGNPLI-FEG 278 (346)
Q Consensus 270 ~g~~~~-y~g 278 (346)
+|+.+. +.|
T Consensus 81 ~g~~~~~~~G 90 (104)
T 2vim_A 81 DGKEVDRFSG 90 (104)
T ss_dssp TTEEEEEEES
T ss_pred CCcEEEEEeC
Confidence 998654 566
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=108.40 Aligned_cols=88 Identities=15% Similarity=0.343 Sum_probs=75.2
Q ss_pred cCcEEEccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----cChhhhhhCCCccccE
Q psy160 191 EDRIELITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pt 264 (346)
.+.+..++.+++++.++ ++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++||
T Consensus 17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~v~~~Pt 94 (124)
T 1faa_A 17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPT 94 (124)
T ss_dssp TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCcchHHHHHHcCCCeeeE
Confidence 45677899999998766 57899999999999999999999999999987 4777777 3578999999999999
Q ss_pred EEEEeCCeEE-EeecCc
Q psy160 265 LVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 265 i~~~~~g~~~-~y~g~~ 280 (346)
++++++|+.+ .+.|..
T Consensus 95 ~~~~~~G~~~~~~~G~~ 111 (124)
T 1faa_A 95 FKILKENSVVGEVTGAK 111 (124)
T ss_dssp EEEEETTEEEEEEESSC
T ss_pred EEEEeCCcEEEEEcCCC
Confidence 9999999865 466754
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=112.62 Aligned_cols=91 Identities=16% Similarity=0.363 Sum_probs=73.9
Q ss_pred HHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEE-
Q psy160 199 RVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPL- 274 (346)
Q Consensus 199 ~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~- 274 (346)
.+.++....++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+++++++|+|+++||+++|++|+.+
T Consensus 32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 110 (128)
T 3ul3_B 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLA 110 (128)
T ss_dssp CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEE
Confidence 333444556788999999999999999999999999999985 7889888 67899999999999999999999865
Q ss_pred EeecCccccccchhhhhhh
Q psy160 275 IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 275 ~y~g~~~~~~~~~~~~~i~ 293 (346)
.+.|..+.+. +..+++
T Consensus 111 ~~~G~~~~~~---l~~~l~ 126 (128)
T 3ul3_B 111 RKDHFVSSND---LIALIK 126 (128)
T ss_dssp EESSCCCHHH---HHHHHT
T ss_pred EecCCCCHHH---HHHHHH
Confidence 4677665332 545543
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=112.92 Aligned_cols=102 Identities=16% Similarity=0.416 Sum_probs=81.3
Q ss_pred cCcEEEccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---cChhhhhhCCCccccEE
Q psy160 191 EDRIELITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
.+.+..++.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+ .++.++.+ .+..++++|+|.++||+
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 85 (133)
T 2dj3_A 6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85 (133)
T ss_dssp SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence 45677899999988655 588999999999999999999999999999873 26899988 46678889999999999
Q ss_pred EEEeCCe---EEEeecC-ccccccchhhhhhhcc
Q psy160 266 VYFRNGN---PLIFEGE-NKILKGTYIGTYISTK 295 (346)
Q Consensus 266 ~~~~~g~---~~~y~g~-~~~~~~~~~~~~i~~~ 295 (346)
++|++|. .+.|.|+ ++.+. +..++...
T Consensus 86 ~~~~~g~~~~~~~~~gg~~~~~~---l~~~l~~~ 116 (133)
T 2dj3_A 86 YFAPSGDKKNPIKFEGGNRDLEH---LSKFIDEH 116 (133)
T ss_dssp EEECTTCTTSCEECCSSCCSTTH---HHHHHHHH
T ss_pred EEEeCCCcccceEecCCCcCHHH---HHHHHHHh
Confidence 9998874 4568844 54222 55555543
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=112.48 Aligned_cols=97 Identities=24% Similarity=0.429 Sum_probs=75.5
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCCh--------------hhHHHHHHHHHHHhhcCcCceEEEEE---cChhhh
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCN--------------ICDQILEGLEKVDDECDIYGIHMVKI---QDPQLA 254 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~--------------~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~ 254 (346)
.+..++.++|++ +++++++++|.||++||+ +|+.+.|.++++++.+.+ ++.++.+ .+++++
T Consensus 4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~~~l~ 82 (123)
T 1oaz_A 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTA 82 (123)
T ss_dssp SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSCTTTG
T ss_pred ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHH
Confidence 466889999986 467789999999999999 999999999999999876 6888888 678899
Q ss_pred hhCCCccccEEEEEeCCeEE-EeecCccccccchhhhhhh
Q psy160 255 KRYSIKTFPALVYFRNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 255 ~~~~i~~~Pti~~~~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
++|+|+++||+++|++|+.+ .+.|..+.+. +..+++
T Consensus 83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~---l~~~l~ 119 (123)
T 1oaz_A 83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQ---LKEFLD 119 (123)
T ss_dssp GGGTCCBSSEEEEEESSSEEEEEESCCCHHH---HHHHHT
T ss_pred HHcCCCccCEEEEEECCEEEEEEeCCCCHHH---HHHHHH
Confidence 99999999999999999864 5788765332 555554
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=110.15 Aligned_cols=99 Identities=12% Similarity=0.178 Sum_probs=79.9
Q ss_pred cCceeecC-HHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
...+.+++ .+++++++.+. ++++|.||++||++|+.+.|.|+++++.+ ++.++.+| +..++++|+|.++||
T Consensus 19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt 95 (133)
T 3cxg_A 19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIHPKLNDQHNIKALPT 95 (133)
T ss_dssp TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccchHHHHHhcCCCCCCE
Confidence 34677777 48999988764 58999999999999999999999998876 36677665 678999999999999
Q ss_pred EEEEe--cCC---cceecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFR--HRF---PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~--~g~---~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++|+ +|+ ...+.|. + .++|.+++.+..
T Consensus 96 ~~~~~~~~g~g~~~~~~~G~-~-~~~l~~~l~~~l 128 (133)
T 3cxg_A 96 FEFYFNLNNEWVLVHTVEGA-N-QNDIEKAFQKYC 128 (133)
T ss_dssp EEEEEEETTEEEEEEEEESC-C-HHHHHHHHHHHS
T ss_pred EEEEEecCCCeEEEEEEcCC-C-HHHHHHHHHHHH
Confidence 99996 676 2357787 4 448999988754
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-14 Score=110.37 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=64.2
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.+..++.++|++.+..++.++|.||++||++|+.+.|.++++++.+.+ ++.|+.+ .+.+++++|+|.++||+++|
T Consensus 33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 111 (140)
T 1v98_A 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLAARYGVRSVPTLVLF 111 (140)
T ss_dssp ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence 3566788899988765444499999999999999999999999999986 6899988 57889999999999999999
Q ss_pred eCCeEE-EeecCcc
Q psy160 269 RNGNPL-IFEGENK 281 (346)
Q Consensus 269 ~~g~~~-~y~g~~~ 281 (346)
++|+.+ .+.|..+
T Consensus 112 ~~G~~~~~~~G~~~ 125 (140)
T 1v98_A 112 RRGAPVATWVGASP 125 (140)
T ss_dssp ETTEEEEEEESCCC
T ss_pred eCCcEEEEEeCCCC
Confidence 999854 4778765
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=105.92 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=72.3
Q ss_pred cEEEc-cHHHHHHHHhc----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccE
Q psy160 193 RIELI-TRVMLETMVEE----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pt 264 (346)
.+..+ +.+++++.++. +++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+.+++++|+|.++||
T Consensus 17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt 94 (124)
T 1xfl_A 17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAMPT 94 (124)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHHcCCCccCE
Confidence 44455 77899887653 7899999999999999999999999999986 6888888 5788999999999999
Q ss_pred EEEEeCCeEEE-eecC
Q psy160 265 LVYFRNGNPLI-FEGE 279 (346)
Q Consensus 265 i~~~~~g~~~~-y~g~ 279 (346)
++++++|+.+. +.|.
T Consensus 95 ~~~~~~G~~~~~~~G~ 110 (124)
T 1xfl_A 95 FMFLKEGKILDKVVGA 110 (124)
T ss_dssp EEEEETTEEEEEEESC
T ss_pred EEEEECCEEEEEEeCC
Confidence 99999998653 5663
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=110.36 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=68.3
Q ss_pred cHHHHHHHH-h-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 198 TRVMLETMV-E-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 198 ~~~~~~~~~-~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
+.++|++.+ + ++++++|.||++||++|+.+.|.++++++++.+ ++.++.+ .+++++++|+|+++||+++|++|+
T Consensus 10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~ 88 (142)
T 1qgv_A 10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK 88 (142)
T ss_dssp SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCHHHHHHcCCCCCCEEEEEECCc
Confidence 678888754 4 588999999999999999999999999999975 6888888 577899999999999999999998
Q ss_pred EEE
Q psy160 273 PLI 275 (346)
Q Consensus 273 ~~~ 275 (346)
.+.
T Consensus 89 ~v~ 91 (142)
T 1qgv_A 89 HIM 91 (142)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=114.88 Aligned_cols=176 Identities=11% Similarity=0.163 Sum_probs=136.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeC--------Cceeee-cCCCCCHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--------QVPLLY-DGDLFDEE 71 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~--------~~~~~y-~G~~~~~~ 71 (346)
|-|+++|| ....+.|.++|+.+.. .+.|+.+.+.+++.+|++++ |++++|++ ..+..| .|..+. +
T Consensus 29 vgff~~~~---~~~~~~f~~~A~~lr~-~~~F~~~~~~~v~~~~~~~~-p~i~~fk~~~~~~kf~e~~~~y~~g~~~~-~ 102 (252)
T 2h8l_A 29 VGFFDDSF---SEAHSEFLKAASNLRD-NYRFAHTNVESLVNEYDDNG-EGIILFRPSHLTNKFEDKTVAYTEQKMTS-G 102 (252)
T ss_dssp EEEESCTT---SHHHHHHHHHHHHTTT-TSCEEEECCHHHHHHHCSSS-EEEEEECCGGGCCTTSCSEEECCCSSCCH-H
T ss_pred EEEECCCC---ChHHHHHHHHHHhccc-CcEEEEEChHHHHHHhCCCC-CcEEEEcchhhcccccccccccCCCCcCH-H
Confidence 35778885 4667789999999832 47888888999999999998 99999985 356789 998744 6
Q ss_pred HHHHHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCCChh----HHHHHHHHHHHHhhccC--CCcEEEEeC-
Q psy160 72 KILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKD----SVKVLERLEKIDGETDN--MDITFVKMA- 144 (346)
Q Consensus 72 ~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~----c~~~~~~~~~~a~~~~~--~~i~~~~~~- 144 (346)
+|.+|+..+..| .|.++|.+++..+ .+.++++.|+.+.+.. ...+...+.++|+.+++ ..+.|+.+|
T Consensus 103 ~l~~fi~~~~~P----lv~e~t~~n~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~ 176 (252)
T 2h8l_A 103 KIKKFIQENIFG----ICPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASR 176 (252)
T ss_dssp HHHHHHHHHSSC----SSCEECTTTHHHH--SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred HHHHHHHhcccC----CeeecccccHhhh--cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEch
Confidence 999999999999 9999999999986 3456778888654322 22588889999999953 247777766
Q ss_pred --ChhhHHhhCC----CCcceEEEEec-CCcceecCCcchhHH--HHHHHhhcc
Q psy160 145 --DPRYARKWGV----TKLPAVVYFRH-RFPSIYRGDLSEEEE--VLQWLITQK 189 (346)
Q Consensus 145 --~~~l~~~~~i----~~~Ptl~~~~~-g~~~~y~g~~~~~~~--i~~fi~~~~ 189 (346)
...+++.||+ ..+|+++++.. +..+.+.+..+.+ + |.+|+.+..
T Consensus 177 ~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~~~~t~~-~~~i~~F~~~~~ 229 (252)
T 2h8l_A 177 KTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRD-GKALERFLQDYF 229 (252)
T ss_dssp TTTHHHHGGGTCCCCSCSSCEEEEECTTSCEEECCSCCCTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCCCCEEEEEeCcCcEecCCcccCcc-hHHHHHHHHHHH
Confidence 5678889999 36899999854 4455566766644 6 999998854
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=107.76 Aligned_cols=85 Identities=20% Similarity=0.406 Sum_probs=73.4
Q ss_pred EEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCC
Q psy160 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
...+.++|+++++++++++|.||++||++|+.+.|.++++++.+.+.++.++.+ .+++++++|+|.++||+++|++|
T Consensus 19 ~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G 98 (121)
T 2j23_A 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNG 98 (121)
T ss_dssp ECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEEETT
T ss_pred EcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEEECC
Confidence 334569999988888999999999999999999999999999887523888888 57889999999999999999999
Q ss_pred eEE-EeecC
Q psy160 272 NPL-IFEGE 279 (346)
Q Consensus 272 ~~~-~y~g~ 279 (346)
+.+ .+.|.
T Consensus 99 ~~~~~~~G~ 107 (121)
T 2j23_A 99 QKIDTVVGA 107 (121)
T ss_dssp EEEEEEESS
T ss_pred eEEeeEcCC
Confidence 864 46776
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-14 Score=119.68 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=82.5
Q ss_pred cCceeec-CHHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcce
Q psy160 86 KNEIEEV-NRRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l-~~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Pt 159 (346)
.+.|.++ +.++|.+.+.+. ++++|.||++||++|+.+.|.|.++++.+. ++.|+.++ ++.++.+|+|.++||
T Consensus 98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~~~~l~~~~~i~~~PT 175 (217)
T 2trc_P 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTGAGDRFSSDVLPT 175 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHTCSTTSCGGGCSE
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECCcHHHHHHCCCCCCCE
Confidence 4568888 899999988654 789999999999999999999999999875 47777765 556889999999999
Q ss_pred EEEEecCCc-ceecCCcch------hHHHHHHHhhc
Q psy160 160 VVYFRHRFP-SIYRGDLSE------EEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~------~~~i~~fi~~~ 188 (346)
+++|++|+. ..+.|.... .+.|..|+.+.
T Consensus 176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 999999884 457776552 24677777654
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=107.94 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=76.7
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----------cChhhhhhCCCc
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQLAKRYSIK 260 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~~~~~~i~ 260 (346)
++.+..++.++|++.+++ +++|.||++||++|+.+.|.+.++++.+. ..+..+.+ .+++++++|+|.
T Consensus 15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~ 91 (135)
T 3emx_A 15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGVE 91 (135)
T ss_dssp TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTCC
T ss_pred cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCCc
Confidence 456778899999998877 99999999999999999999999999876 23333333 246789999999
Q ss_pred cccEEEEEeCCeEE-EeecCccccccchhhhhhhc
Q psy160 261 TFPALVYFRNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 261 ~~Pti~~~~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++||+++|++|+.+ .+.|..+.+. +..+++.
T Consensus 92 ~~Pt~~~~~~G~~v~~~~G~~~~~~---~~~~i~~ 123 (135)
T 3emx_A 92 GTPTLVFYKEGRIVDKLVGATPWSL---KVEKARE 123 (135)
T ss_dssp SSSEEEEEETTEEEEEEESCCCHHH---HHHHHHH
T ss_pred eeCeEEEEcCCEEEEEEeCCCCHHH---HHHHHHH
Confidence 99999999999854 4678765332 4444443
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=102.72 Aligned_cols=83 Identities=14% Similarity=0.334 Sum_probs=71.4
Q ss_pred EEEc-cHHHHHHHHhc----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 194 IELI-TRVMLETMVEE----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 194 v~~l-~~~~~~~~~~~----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
+..+ +.+++++.++. +++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|.++|++
T Consensus 6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccccHHHHHhCCCCcccEE
Confidence 4444 77999987664 7899999999999999999999999999986 6888888 57789999999999999
Q ss_pred EEEeCCeEEE-eec
Q psy160 266 VYFRNGNPLI-FEG 278 (346)
Q Consensus 266 ~~~~~g~~~~-y~g 278 (346)
+++++|+.+. +.|
T Consensus 84 ~~~~~G~~~~~~~g 97 (113)
T 1ti3_A 84 IFLKDGKLVDKTVG 97 (113)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEeCCEEEEEEec
Confidence 9999998654 556
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=105.21 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=72.8
Q ss_pred EEEc--cHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 194 IELI--TRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 194 v~~l--~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
+..+ +.++|++ +.+++++++|.||++||++|+.+.|.++++++.+ + ++.++.+ .+++++++|+|.++||+++
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 82 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K-DVTFIKVDVDKNGNAADAYGVSSIPALFF 82 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C-CeEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence 4455 6788985 5567889999999999999999999999999998 3 7888888 5788999999999999999
Q ss_pred EeC----CeEE-EeecCcc
Q psy160 268 FRN----GNPL-IFEGENK 281 (346)
Q Consensus 268 ~~~----g~~~-~y~g~~~ 281 (346)
|++ |+.+ ++.|...
T Consensus 83 ~~~~~~~G~~~~~~~G~~~ 101 (118)
T 2f51_A 83 VKKEGNEIKTLDQFVGADV 101 (118)
T ss_dssp EEEETTEEEEEEEEESCCH
T ss_pred EeCCCCcceEEEeecCCCH
Confidence 988 7754 4677764
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-14 Score=109.89 Aligned_cols=98 Identities=15% Similarity=0.406 Sum_probs=78.3
Q ss_pred CcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc----CceEEEEE--cChhhhhhCCCccccE
Q psy160 192 DRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDI----YGIHMVKI--QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~----~~i~~~~i--~~~~~~~~~~i~~~Pt 264 (346)
+.+..++.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+.+ .++.++.+ +...+++ +|+++||
T Consensus 7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~--~v~~~Pt 84 (121)
T 2djj_A 7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD--EIQGFPT 84 (121)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS--CCSSSSE
T ss_pred CCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc--ccCcCCe
Confidence 467788999999874 6788999999999999999999999999999874 25888888 3334665 9999999
Q ss_pred EEEEeCC-e--EEEeecCccccccchhhhhhhc
Q psy160 265 LVYFRNG-N--PLIFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 265 i~~~~~g-~--~~~y~g~~~~~~~~~~~~~i~~ 294 (346)
+++|++| + ...|.|.++.+. +..+++.
T Consensus 85 ~~~~~~~~~~~~~~~~G~~~~~~---l~~~i~~ 114 (121)
T 2djj_A 85 IKLYPAGAKGQPVTYSGSRTVED---LIKFIAE 114 (121)
T ss_dssp EEEECSSCTTSCCCCCCCSCHHH---HHHHHHH
T ss_pred EEEEeCcCCCCceEecCCCCHHH---HHHHHHh
Confidence 9999877 4 567888775332 5556554
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=105.69 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=85.5
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC--cceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK--LPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~--~Ptl~~ 162 (346)
.+.++|.++|++++.+..+++|.||++ |++|+.+.|.++++|+++++. +.|+.+| ++.++.+|||++ .||+++
T Consensus 7 lv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i 84 (133)
T 2djk_A 7 LIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKAFGAHAGNLNLKTDKFPAFAI 84 (133)
T ss_dssp CSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred ceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHHhHHHHHHcCCCcccCCEEEE
Confidence 788999999999988888999999999 899999999999999998653 8888876 678999999999 999999
Q ss_pred Eec--CCcceec--CCcchhHHHHHHHhhcc
Q psy160 163 FRH--RFPSIYR--GDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~--g~~~~y~--g~~~~~~~i~~fi~~~~ 189 (346)
|++ |+.+... |..+.+ .|.+|+.+..
T Consensus 85 ~~~~~g~~~~~~~~g~~~~~-~l~~fi~~~l 114 (133)
T 2djk_A 85 QEVAKNQKFPFDQEKEITFE-AIKAFVDDFV 114 (133)
T ss_dssp ECTTTCCBCCCCSSSCCCHH-HHHHHHHHHH
T ss_pred EecCcCcccCCCCccccCHH-HHHHHHHHHH
Confidence 997 6666654 888754 8999998754
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=102.80 Aligned_cols=85 Identities=15% Similarity=0.360 Sum_probs=71.8
Q ss_pred cEEEc-cHHHHHHHHhc----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccE
Q psy160 193 RIELI-TRVMLETMVEE----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pt 264 (346)
.+..+ +.+++++.+.. +++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++|+
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt 84 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKDVAEAYNVEAMPT 84 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence 44455 67899887654 7899999999999999999999999999986 5777777 5778999999999999
Q ss_pred EEEEeCCeEEE-eecC
Q psy160 265 LVYFRNGNPLI-FEGE 279 (346)
Q Consensus 265 i~~~~~g~~~~-y~g~ 279 (346)
++++++|+.+. +.|.
T Consensus 85 ~~~~~~g~~~~~~~g~ 100 (118)
T 2vm1_A 85 FLFIKDGEKVDSVVGG 100 (118)
T ss_dssp EEEEETTEEEEEEESC
T ss_pred EEEEeCCeEEEEecCC
Confidence 99999998654 5563
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=117.78 Aligned_cols=97 Identities=13% Similarity=0.383 Sum_probs=83.3
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEc--CCChhhHHHHHHHHHHHhhcCc-CceEEEEEc--------ChhhhhhCCCc
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYK--LNCNICDQILEGLEKVDDECDI-YGIHMVKIQ--------DPQLAKRYSIK 260 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~--~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i~--------~~~~~~~~~i~ 260 (346)
..+..++.++|+++++++++++|.||+ |||+ +.|.|+++|+.+.+ .++.|++++ ++++|++|+|+
T Consensus 5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~ 80 (240)
T 2qc7_A 5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD 80 (240)
T ss_dssp TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence 356789999999988888999999999 9998 99999999999863 369999995 68999999999
Q ss_pred --cccEEEEEeCCe---EEEeecCccccccchhhhhhhcc
Q psy160 261 --TFPALVYFRNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 261 --~~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
++||+++|++|+ +..|.|.++.+. +..|++..
T Consensus 81 ~~~~PTl~~f~~G~~~~~~~y~G~~~~~~---L~~fi~~~ 117 (240)
T 2qc7_A 81 KESYPVFYLFRDGDFENPVPYTGAVKVGA---IQRWLKGQ 117 (240)
T ss_dssp GGGCSEEEEEETTCSSCCEECCSCSCHHH---HHHHHHHT
T ss_pred CCCCCEEEEEeCCCcCcceeecCCCCHHH---HHHHHHHh
Confidence 999999999997 688999886433 66666654
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-15 Score=111.20 Aligned_cols=97 Identities=16% Similarity=0.302 Sum_probs=79.4
Q ss_pred eeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+.+++.+++++.+ .++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.++ +..++++|+|.++||+++|+
T Consensus 3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 81 (106)
T 2yj7_A 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDENPNTAAQYGIRSIPTLLLFK 81 (106)
Confidence 6678888888655 5668999999999999999999999999988753 36666654 67899999999999999998
Q ss_pred cCC-cceecCCcchhHHHHHHHhh
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
+|+ ...+.|..+.+ ++.+++.+
T Consensus 82 ~g~~~~~~~g~~~~~-~l~~~l~~ 104 (106)
T 2yj7_A 82 NGQVVDRLVGAQPKE-ALKERIDK 104 (106)
Confidence 887 44578877644 78888764
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=105.88 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred ecCHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcc
Q psy160 91 EVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-------DPRYARKWGVTKLP 158 (346)
Q Consensus 91 ~l~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~P 158 (346)
..+.++++..+.+ +++++|.||++||++|+.+.|.+ .++++.+.+ +.++.++ ...++++|+|.++|
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~--~~~~~vd~~~~~~~~~~l~~~~~v~~~P 93 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD--TVLLQANVTANDAQDVALLKHLNVLGLP 93 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT--SEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--cEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence 3457888887764 68999999999999999999999 888888754 6666554 35799999999999
Q ss_pred eEEEE-ecCCc---ceecCCcchhHHHHHHHhhcc
Q psy160 159 AVVYF-RHRFP---SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 159 tl~~~-~~g~~---~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|+++| ++|+. ..+.|..+.+ +|.+++.+..
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~-~l~~~l~~~~ 127 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAE-TFSAHLRDRQ 127 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHH-HHHHHHHHC-
T ss_pred EEEEECCCCCEeeeeeeeeccCHH-HHHHHHHhcC
Confidence 99999 78886 4789988844 8999987654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=105.84 Aligned_cols=85 Identities=14% Similarity=0.276 Sum_probs=71.9
Q ss_pred cEEEccHHHHHHHHh----ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~----~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
.+...+.++|++.+. .+++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+.+++++|+|.++||+
T Consensus 26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKATPTF 103 (139)
T ss_dssp CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCEESEE
T ss_pred EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcccHHHHHHcCCCcccEE
Confidence 444446899988653 47899999999999999999999999999985 5788877 67889999999999999
Q ss_pred EEEeCCeEE-EeecC
Q psy160 266 VYFRNGNPL-IFEGE 279 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~ 279 (346)
+++++|+.+ .+.|.
T Consensus 104 ~~~~~G~~~~~~~G~ 118 (139)
T 3d22_A 104 FFLRDGQQVDKLVGA 118 (139)
T ss_dssp EEEETTEEEEEEESC
T ss_pred EEEcCCeEEEEEeCC
Confidence 999999865 46676
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=113.57 Aligned_cols=97 Identities=10% Similarity=0.152 Sum_probs=67.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCC--ChhhHHHHHHHHHHHhhcCcCceE--EEEE---cChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLN--CNICDQILEGLEKVDDECDIYGIH--MVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~--c~~c~~~~~~~~~la~~~~~~~i~--~~~i---~~~~~~~~~~i~~~Pti 265 (346)
.+..++.++|++++++++.++|.|+++| |++|+.+.|.|+++++++ + ++. ++++ .+++++++|+|+++||+
T Consensus 18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~~~~la~~~~V~~iPT~ 95 (142)
T 2es7_A 18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQSEAIGDRFNVRRFPAT 95 (142)
T ss_dssp TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence 5668888999998888778889999877 999999999999999998 5 677 8888 57789999999999999
Q ss_pred EEEeCCeEE-EeecCccccccchhhhhhhc
Q psy160 266 VYFRNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|++|+.+ ++.|.++.+. +..+++.
T Consensus 96 ~~fk~G~~v~~~~G~~~~~~---l~~~i~~ 122 (142)
T 2es7_A 96 LVFTDGKLRGALSGIHPWAE---LLTLMRS 122 (142)
T ss_dssp EEESCC----CEESCCCHHH---HHHHHHH
T ss_pred EEEeCCEEEEEEeCCCCHHH---HHHHHHH
Confidence 999999854 4788765322 5555544
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=106.81 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=71.0
Q ss_pred CcEEEccHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.+..++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++++. ++.|+.++-....++|+|.++||+++|
T Consensus 10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~~~~~i~~~Pt~~~~ 87 (135)
T 2dbc_A 10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCIEHYHDNCLPTIFVY 87 (135)
T ss_dssp CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSCSSCCSSCCSEEEEE
T ss_pred CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCcccCCCCCCCEEEEE
Confidence 45667799999987653 2689999999999999999999999999985 688999843333488999999999999
Q ss_pred eCCeEE-EeecCc
Q psy160 269 RNGNPL-IFEGEN 280 (346)
Q Consensus 269 ~~g~~~-~y~g~~ 280 (346)
++|+.+ .+.|..
T Consensus 88 ~~G~~v~~~~G~~ 100 (135)
T 2dbc_A 88 KNGQIEGKFIGII 100 (135)
T ss_dssp SSSSCSEEEESTT
T ss_pred ECCEEEEEEEeEE
Confidence 999743 456654
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-14 Score=132.03 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=85.6
Q ss_pred cCceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCC-------CcEEEEeC---ChhhHHhhC
Q psy160 86 KNEIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNM-------DITFVKMA---DPRYARKWG 153 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-------~i~~~~~~---~~~l~~~~~ 153 (346)
...|.+++.++|++++.++ ++++|.|||+||++|+.+.|.|+++++.+... .+.|+.+| ++++|++|+
T Consensus 22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~ 101 (470)
T 3qcp_A 22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD 101 (470)
T ss_dssp CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence 4579999999999988654 68999999999999999999999999998521 37888776 778999999
Q ss_pred CCCcceEEEEecCC---cceecCCcchhHHHHHHHhhccc
Q psy160 154 VTKLPAVVYFRHRF---PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 154 i~~~Ptl~~~~~g~---~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|.++||+++|.+|. +..|.|.++.+ .| .|+.+...
T Consensus 102 V~~~PTlilf~~gg~~~~~~y~G~r~~e-~L-~fI~k~l~ 139 (470)
T 3qcp_A 102 INFVPRLFFFYPRDSCRSNEECGTSSLE-HV-AFENSHLE 139 (470)
T ss_dssp CCSSCEEEEEEESSCCCTTSCCCCCCEE-EE-ECSCTTCC
T ss_pred CCccCeEEEEECCCceEEEEeeCCCCHH-HH-HHHHHhcC
Confidence 99999999998654 66799988754 56 77666543
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=116.54 Aligned_cols=97 Identities=16% Similarity=0.306 Sum_probs=82.1
Q ss_pred cCcEEEccHHHHHHHHhccceEEEEEE--cCCChhhHHHHHHHHHHHhhcCc--CceEEEEE---c-----ChhhhhhCC
Q psy160 191 EDRIELITRVMLETMVEETQYLAVYFY--KLNCNICDQILEGLEKVDDECDI--YGIHMVKI---Q-----DPQLAKRYS 258 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~~~lv~F~--~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i---~-----~~~~~~~~~ 258 (346)
++.+..++.++|+++++++++++|.|| ||||+ +.|.|+++|+.+.+ .++.|++| . ++++|++|+
T Consensus 15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 456778999999998888899999999 99998 99999999999843 36999998 4 689999999
Q ss_pred Cc--cccEEEEEeCCe---EEEe--ecCccccccchhhhhhhcc
Q psy160 259 IK--TFPALVYFRNGN---PLIF--EGENKILKGTYIGTYISTK 295 (346)
Q Consensus 259 i~--~~Pti~~~~~g~---~~~y--~g~~~~~~~~~~~~~i~~~ 295 (346)
|+ ++||+++|+ |+ +..| .|.++.+. +..|++..
T Consensus 91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~---L~~fi~~~ 130 (248)
T 2c0g_A 91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDN---LKAFVSAN 130 (248)
T ss_dssp CCTTSCCEEEEES-SSSSSEEECCTTSCCCHHH---HHHHHHHH
T ss_pred CCcCCCCeEEEEe-CCcCcceeecccCCCCHHH---HHHHHHHh
Confidence 99 999999999 87 5788 89886433 66666654
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=116.01 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=80.5
Q ss_pred cCceeec-CHHHHHHHHhc---CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcce
Q psy160 86 KNEIEEV-NRRMLDKLLEE---NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Pt 159 (346)
.+.|.++ +.++|.+.+.. +++++|.||++||++|+.+.|.|.++++.+.. +.|+.++ ...++.+|+|.++||
T Consensus 111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~d~~~l~~~~~I~~~PT 188 (245)
T 1a0r_P 111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKASNTGAGDRFSSDVLPT 188 (245)
T ss_dssp CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEHHHHCCTTSSCTTTCSE
T ss_pred CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeCCcHHHHHHCCCCCCCE
Confidence 4578888 79999998854 57899999999999999999999999998754 7777776 445889999999999
Q ss_pred EEEEecCCc-ceecCCcc------hhHHHHHHHhhc
Q psy160 160 VVYFRHRFP-SIYRGDLS------EEEEVLQWLITQ 188 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~------~~~~i~~fi~~~ 188 (346)
+++|++|+. ..+.|... ..+.|..|+.+.
T Consensus 189 ll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 189 LLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp EEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 999999874 33444321 133677777765
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=105.71 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=78.3
Q ss_pred eeecCHHHHHHHH----hcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCC
Q psy160 89 IEEVNRRMLDKLL----EENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTK 156 (346)
Q Consensus 89 v~~l~~~~~~~~~----~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~ 156 (346)
...++..+|++.+ .++++++|.||++||++|+.+.|.+ ..+++.+.. ++.++.++ ...++++|+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~ 86 (130)
T 2kuc_A 8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEKGEGVELRKKYGVHA 86 (130)
T ss_dssp CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSSTTHHHHHHHTTCCS
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCCcchHHHHHHcCCCC
Confidence 3445667777766 3678999999999999999999999 666665532 36666665 457999999999
Q ss_pred cceEEEE-ecCCc-ceecCCcchhHHHHHHHhhcccc
Q psy160 157 LPAVVYF-RHRFP-SIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 157 ~Ptl~~~-~~g~~-~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+||++++ ++|+. ..+.|..+.+ ++.+++++...+
T Consensus 87 ~Pt~~~~d~~G~~~~~~~G~~~~~-~l~~~l~~~~~~ 122 (130)
T 2kuc_A 87 YPTLLFINSSGEVVYRLVGAEDAP-ELLKKVKLGVES 122 (130)
T ss_dssp SCEEEEECTTSCEEEEEESCCCHH-HHHHHHHHHHSC
T ss_pred CCEEEEECCCCcEEEEecCCCCHH-HHHHHHHHHHHh
Confidence 9999999 57874 4588887744 899999887654
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=104.89 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=88.1
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCcc--ccEEEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKT--FPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~--~Pti~~ 267 (346)
.+..+|.++|++++++..+++|.||++ |++|+.+.|.++++|+++++ ++.|+++ .++.+++.|||++ +||+++
T Consensus 7 lv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i 84 (133)
T 2djk_A 7 LIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKAFGAHAGNLNLKTDKFPAFAI 84 (133)
T ss_dssp CSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred ceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHHhHHHHHHcCCCcccCCEEEE
Confidence 456889999999888888999999999 89999999999999999987 7999999 5678999999999 999999
Q ss_pred EeC--CeEEEee--cCccccccchhhhhhhcc-CCCCCCcccCCCCCC
Q psy160 268 FRN--GNPLIFE--GENKILKGTYIGTYISTK-AFSLIPFCFSEKHPG 310 (346)
Q Consensus 268 ~~~--g~~~~y~--g~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~ 310 (346)
|++ |+...+. |..+.+. +..|++.. ...+-|.+-||..++
T Consensus 85 ~~~~~g~~~~~~~~g~~~~~~---l~~fi~~~l~Gkl~p~~kSe~iP~ 129 (133)
T 2djk_A 85 QEVAKNQKFPFDQEKEITFEA---IKAFVDDFVAGKIEPSIKSEPIPE 129 (133)
T ss_dssp ECTTTCCBCCCCSSSCCCHHH---HHHHHHHHHHTCCCCSSCCCCCCT
T ss_pred EecCcCcccCCCCccccCHHH---HHHHHHHHHcCCcCccccCCCCCC
Confidence 997 6654444 6665332 55555532 233445665665554
|
| >3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=108.02 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=135.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeC--------CceeeecC--CCCCH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRK--------QVPLLYDG--DLFDE 70 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~--------~~~~~y~G--~~~~~ 70 (346)
|-|++++| ....+.|.++|+.++. .+.|+.+.+.+++.+|++++ |+|++|++ ..+..|.| ..+.
T Consensus 30 Vgff~~~~---~~~~~~F~~~A~~lr~-~~~F~~t~~~~v~~~~~v~~-p~ivlfk~~~~~~kfde~~~~y~g~~~~~~- 103 (250)
T 3ec3_A 30 LGVFQGVG---DPGYLQYQDAANTLRE-DYKFHHTFSTEIAKFLKVSL-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEA- 103 (250)
T ss_dssp EEECSCTT---CHHHHHHHHHHHHHTT-TCCEEEECCHHHHHHHTCCS-SEEEEECCGGGCCTTSCSCEEEECCTTSCH-
T ss_pred EEEEcCCC---chHHHHHHHHHHhhhc-CcEEEEECcHHHHHHcCCCC-CeEEEEecchhhccccccceeccCCCCCCH-
Confidence 35788875 4778889999998833 47888889999999999998 99999985 35678985 4444
Q ss_pred HHHHHHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEECCC-C---h-hHHHHHHHHHHHHhhccCCCcEEEEeC-
Q psy160 71 EKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFYETD-H---K-DSVKVLERLEKIDGETDNMDITFVKMA- 144 (346)
Q Consensus 71 ~~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~-C---~-~c~~~~~~~~~~a~~~~~~~i~~~~~~- 144 (346)
++|.+|+..+..| .|.++|.+|+..+. .+.+.++.|+.+. + . ....+...+.++|+.++ ++.|+-+|
T Consensus 104 ~~l~~fi~~~~~P----lv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k--ki~F~~~d~ 176 (250)
T 3ec3_A 104 SAIKDYVVKHALP----LVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP--EYTFAIADE 176 (250)
T ss_dssp HHHHHHHHHHSSC----TEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT--TSEEEEEET
T ss_pred HHHHHHHHHcCCC----ceeecCccchhhhh-ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc--ceeEEEEcH
Confidence 6999999999999 99999999999877 4677888888643 2 2 34568999999999988 58888776
Q ss_pred --ChhhHHhhCCCC--c-ceEEEEec-CCcceec-CCcchhHHHHHHHhhccc
Q psy160 145 --DPRYARKWGVTK--L-PAVVYFRH-RFPSIYR-GDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 145 --~~~l~~~~~i~~--~-Ptl~~~~~-g~~~~y~-g~~~~~~~i~~fi~~~~~ 190 (346)
.....+.||+.. + |.++++.. +..+.+. +..+ .++|.+|+.+...
T Consensus 177 ~~~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t-~~~i~~Fv~~~~~ 228 (250)
T 3ec3_A 177 EDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFD-SDALREFVMAFKK 228 (250)
T ss_dssp TTTHHHHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccCCCcEEEEEcCCCceecCCcccCC-HHHHHHHHHHHHC
Confidence 556778889974 4 46666653 3344455 5566 4599999988543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=113.81 Aligned_cols=88 Identities=19% Similarity=0.324 Sum_probs=74.8
Q ss_pred CcEEEc-cHHHHHHHHhcc---ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELI-TRVMLETMVEET---QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l-~~~~~~~~~~~~---~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
+.+..+ +.++|.+++... ++++|.||++||++|+.+.|.|.++|+.+. .+.|+.+ +++.++++|+|.++||+
T Consensus 99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~~~~l~~~~~i~~~PTl 176 (217)
T 2trc_P 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTGAGDRFSSDVLPTL 176 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHTCSTTSCGGGCSEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECCcHHHHHHCCCCCCCEE
Confidence 356677 889999977543 799999999999999999999999999985 6888888 55678999999999999
Q ss_pred EEEeCCeEE-EeecCcc
Q psy160 266 VYFRNGNPL-IFEGENK 281 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~~~ 281 (346)
++|++|+.+ .+.|...
T Consensus 177 ~~~~~G~~v~~~~G~~~ 193 (217)
T 2trc_P 177 LVYKGGELISNFISVAE 193 (217)
T ss_dssp EEEETTEEEEEETTGGG
T ss_pred EEEECCEEEEEEeCCcc
Confidence 999999864 4667654
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=102.83 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=61.4
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEEEecCCcceecCCcch
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSE 177 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~ 177 (346)
+..+|.|||+||++|+.+.|.|+++++.+. ++.++ ++++|++|+|+++||+++ +|+ .|.|.++.
T Consensus 13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~--~~~G~~~~ 83 (106)
T 3kp8_A 13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR--TYTGVRSL 83 (106)
T ss_dssp HHTCEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE--EEESCCCH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE--EecCCCCH
Confidence 456899999999999999999999997753 44444 578999999999999877 665 48899884
Q ss_pred hHHHHHHHhhcc
Q psy160 178 EEEVLQWLITQK 189 (346)
Q Consensus 178 ~~~i~~fi~~~~ 189 (346)
+ +|.+|+.-..
T Consensus 84 ~-~l~~~~~~~~ 94 (106)
T 3kp8_A 84 E-ALAVASGYPL 94 (106)
T ss_dssp H-HHHHHHTCCC
T ss_pred H-HHHHHhCCcc
Confidence 4 8999876543
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=102.77 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=57.4
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-------ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-------DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKI 73 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i 73 (346)
|+||||||++|+++.|.|+++++.+. .+.++ +.++|.+|+|+++||+++ +|.. |.|..+. +++
T Consensus 17 V~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~--~~G~~~~-~~l 86 (106)
T 3kp8_A 17 TMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT--YTGVRSL-EAL 86 (106)
T ss_dssp EEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE--EESCCCH-HHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE--ecCCCCH-HHH
Confidence 68999999999999999999998764 34433 578999999999999777 7764 8897766 589
Q ss_pred HHHHhcc
Q psy160 74 LTWLTSQ 80 (346)
Q Consensus 74 ~~~i~~~ 80 (346)
.+|+.-+
T Consensus 87 ~~~~~~~ 93 (106)
T 3kp8_A 87 AVASGYP 93 (106)
T ss_dssp HHHHTCC
T ss_pred HHHhCCc
Confidence 9987644
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-13 Score=99.49 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=65.4
Q ss_pred EEc-cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChh----hhhhCCCcc-ccEE
Q psy160 195 ELI-TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQ----LAKRYSIKT-FPAL 265 (346)
Q Consensus 195 ~~l-~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~----~~~~~~i~~-~Pti 265 (346)
..+ +.++|+++++++++++|.|+|.||++|+.+.|.++++++. . ++.++++ ++++ ++.+|+|++ .|++
T Consensus 9 ~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~ 85 (112)
T 3iv4_A 9 IKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-R--DMDGYYLIVQQERDLSDYIAKKTNVKHESPQA 85 (112)
T ss_dssp EECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-H--TCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEE
T ss_pred eecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-C--CceEEEEEeecCchhhHHHHHHhCCccCCCeE
Confidence 344 6688999998899999999999999999999999999985 2 5666666 4433 899999994 9999
Q ss_pred EEEeCCeEE
Q psy160 266 VYFRNGNPL 274 (346)
Q Consensus 266 ~~~~~g~~~ 274 (346)
++|++|+.+
T Consensus 86 il~k~G~~v 94 (112)
T 3iv4_A 86 FYFVNGEMV 94 (112)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 999999865
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=102.02 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=76.7
Q ss_pred ceeecCHHHHHHHHhc--CCcEEEEEECC-------CChhHHHHHHHHHHHHhhccCCCcEEEE--e-------C-Chhh
Q psy160 88 EIEEVNRRMLDKLLEE--NEFVTVFFYET-------DHKDSVKVLERLEKIDGETDNMDITFVK--M-------A-DPRY 148 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~--~~~~lv~F~~~-------~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~-------~-~~~l 148 (346)
.+...+.++|++.+.+ +++++|.||++ ||++|+.+.|.+.++++.+.+ ++.++. + + +..+
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~~d~~~~~ 84 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDF 84 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhhhchhHHH
Confidence 5667789999998876 78999999999 999999999999999998853 366655 4 3 5679
Q ss_pred HHhhCCCCcceEEEEecCCcce-ecCCcchhHHHHHHHhh
Q psy160 149 ARKWGVTKLPAVVYFRHRFPSI-YRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~g~~~~-y~g~~~~~~~i~~fi~~ 187 (346)
+++|+|.++||+++|.++.... +.| .+ .+.|.+|+.+
T Consensus 85 ~~~~~i~~~Pt~~~~~~~~~~~g~~~-~~-~~~l~~~i~~ 122 (123)
T 1wou_A 85 RKNLKVTAVPTLLKYGTPQKLVESEC-LQ-ANLVEMLFSE 122 (123)
T ss_dssp HHHHCCCSSSEEEETTSSCEEEGGGG-GC-HHHHHHHHHC
T ss_pred HHHCCCCeeCEEEEEcCCceEecccc-CC-HHHHHHHHhc
Confidence 9999999999999998865333 344 23 3478887764
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=103.54 Aligned_cols=85 Identities=19% Similarity=0.335 Sum_probs=69.8
Q ss_pred CcEEEcc-HHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 192 DRIELIT-RVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l~-~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
+.+..++ .+++++++++ +++++|.||++||++|+.+.|.++++++.+ ++.++.+ .+.+++++|+|.++||+
T Consensus 20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~ 96 (133)
T 3cxg_A 20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIHPKLNDQHNIKALPTF 96 (133)
T ss_dssp EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccchHHHHHhcCCCCCCEE
Confidence 3455665 5889888775 469999999999999999999999998876 4777777 67889999999999999
Q ss_pred EEEe--CCe--EE-EeecC
Q psy160 266 VYFR--NGN--PL-IFEGE 279 (346)
Q Consensus 266 ~~~~--~g~--~~-~y~g~ 279 (346)
++|+ +|+ .+ .+.|.
T Consensus 97 ~~~~~~~g~g~~~~~~~G~ 115 (133)
T 3cxg_A 97 EFYFNLNNEWVLVHTVEGA 115 (133)
T ss_dssp EEEEEETTEEEEEEEEESC
T ss_pred EEEEecCCCeEEEEEEcCC
Confidence 9997 887 33 46665
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=93.85 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=60.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.||++||++|+++.|.++++++.++. ++.++.+++.+++.+|+|+++||+++ +|..+.. |...+.+++.+++
T Consensus 4 v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~Pt~~~--~G~~~~~-G~~~~~~~l~~~l 76 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIKEMDQILEAGLTALPGLAV--DGELKIM-GRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEECSHHHHHHHTCSSSSCEEE--TTEEEEC-SSCCCHHHHHHHC
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEecCHHHHHHCCCCcCCEEEE--CCEEEEc-CCCCCHHHHHHHh
Confidence 579999999999999999999988742 57788888999999999999999998 7776554 7652335777775
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-14 Score=109.17 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=81.2
Q ss_pred Cceeec-CHHHHHHHHhc----CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 87 NEIEEV-NRRMLDKLLEE----NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 87 ~~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
..+.++ +.++|++.+.. +++++|.||++||++|+.+.|.|.++++.+. ++.++.++ +..++++|+|.++|
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~P 91 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKEVAEKYNVEAMP 91 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTSGGGHHHHTCCSSC
T ss_pred cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHcCCCccc
Confidence 467777 56999988865 6899999999999999999999999999875 36666665 67899999999999
Q ss_pred eEEEEecCCc-ceecCCcchhHHHHHHHhhccc
Q psy160 159 AVVYFRHRFP-SIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 159 tl~~~~~g~~-~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|++++++|+. ..+.|. + .+++.+++.+...
T Consensus 92 t~~~~~~g~~~~~~~g~-~-~~~l~~~l~~~~~ 122 (130)
T 1wmj_A 92 TFLFIKDGAEADKVVGA-R-KDDLQNTIVKHVG 122 (130)
T ss_dssp CCCBCTTTTCCBCCCTT-C-TTTHHHHHHHHTS
T ss_pred eEEEEeCCeEEEEEeCC-C-HHHHHHHHHHHHh
Confidence 9999988884 446773 4 3378888877543
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=97.11 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=74.2
Q ss_pred ceeec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hHHhhCCC-CcceE
Q psy160 88 EIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YARKWGVT-KLPAV 160 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~~~~~i~-~~Ptl 160 (346)
....+ |.++|+++++++++++|+|+|.||+.|+.+.|.+++++.. .+..+..++++ .+. ++.++||+ ..||+
T Consensus 7 ~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~ 85 (112)
T 3iv4_A 7 VAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQA 85 (112)
T ss_dssp CEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEE
T ss_pred ceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCCCeE
Confidence 44556 5788999999999999999999999999999999999885 44445555665 433 89999999 59999
Q ss_pred EEEecCCcce--ecCCcchhHHHHHHH
Q psy160 161 VYFRHRFPSI--YRGDLSEEEEVLQWL 185 (346)
Q Consensus 161 ~~~~~g~~~~--y~g~~~~~~~i~~fi 185 (346)
++|++|+.+- -.+.++.. .|.+.+
T Consensus 86 il~k~G~~v~~~SH~~I~~~-~l~~~~ 111 (112)
T 3iv4_A 86 FYFVNGEMVWNRDHGDINVS-SLAQAE 111 (112)
T ss_dssp EEEETTEEEEEEEGGGCSHH-HHHHHT
T ss_pred EEEECCEEEEEeeccccCHH-HHHHhh
Confidence 9999998432 34555533 555543
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=105.65 Aligned_cols=87 Identities=20% Similarity=0.337 Sum_probs=69.9
Q ss_pred HHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-----ChhhhhhCCCccccEEEEEe-CCeEE-Ee
Q psy160 204 TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-----DPQLAKRYSIKTFPALVYFR-NGNPL-IF 276 (346)
Q Consensus 204 ~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-----~~~~~~~~~i~~~Pti~~~~-~g~~~-~y 276 (346)
....++++++|.||++||++|+.+.|.+.++++.+.+ ++.++.++ +.+++++|+|.++||+++|+ +|+.+ .+
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~ 99 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVH 99 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEe
Confidence 3445678999999999999999999999999999874 67887774 56899999999999999998 88754 57
Q ss_pred ecCccccccchhhhhhhc
Q psy160 277 EGENKILKGTYIGTYIST 294 (346)
Q Consensus 277 ~g~~~~~~~~~~~~~i~~ 294 (346)
.|..+.+. +..+++.
T Consensus 100 ~G~~~~~~---l~~~l~~ 114 (126)
T 2l57_A 100 QGLMRKNN---IETILNS 114 (126)
T ss_dssp ESCCCHHH---HHHHHHH
T ss_pred cCCCCHHH---HHHHHHH
Confidence 78765332 5555543
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=113.11 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=73.4
Q ss_pred CcEEEc-cHHHHHHHHh---ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELI-TRVMLETMVE---ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l-~~~~~~~~~~---~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
+.|..+ +.++|.+.+. .+++++|.||++||++|+.+.|.|.++|..+. ++.|+.+ +..+++.+|+|.++||+
T Consensus 112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~~~l~~~~~I~~~PTl 189 (245)
T 1a0r_P 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKASNTGAGDRFSSDVLPTL 189 (245)
T ss_dssp CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHHHCCTTSSCTTTCSEE
T ss_pred CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCcHHHHHHCCCCCCCEE
Confidence 456677 7899999774 36899999999999999999999999999987 4888888 34668999999999999
Q ss_pred EEEeCCeEE-EeecCc
Q psy160 266 VYFRNGNPL-IFEGEN 280 (346)
Q Consensus 266 ~~~~~g~~~-~y~g~~ 280 (346)
++|++|+.+ .+.|..
T Consensus 190 l~~~~G~~v~~~vG~~ 205 (245)
T 1a0r_P 190 LVYKGGELLSNFISVT 205 (245)
T ss_dssp EEEETTEEEEEETTGG
T ss_pred EEEECCEEEEEEeCCc
Confidence 999999864 455643
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=101.70 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHHHhcCCcEEEEEECCCChhHHHHHHHHH--HHHhhccCCCcEEEE--e---C-ChhhHHhhCC---CCcceEEEE-ec
Q psy160 98 DKLLEENEFVTVFFYETDHKDSVKVLERLE--KIDGETDNMDITFVK--M---A-DPRYARKWGV---TKLPAVVYF-RH 165 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~--~~a~~~~~~~i~~~~--~---~-~~~l~~~~~i---~~~Ptl~~~-~~ 165 (346)
.....++++++|.||++||++|+.+.|.|. ++++.+.+ ++.++. + + +..++++|+| .++||+++| ++
T Consensus 23 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~ 101 (133)
T 3fk8_A 23 AAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSD 101 (133)
T ss_dssp HHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTT
T ss_pred HHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCC
Confidence 333456899999999999999999999999 88888732 255544 4 3 6789999999 999999999 67
Q ss_pred CCc-ceecC-------CcchhHHHHHHHhhc
Q psy160 166 RFP-SIYRG-------DLSEEEEVLQWLITQ 188 (346)
Q Consensus 166 g~~-~~y~g-------~~~~~~~i~~fi~~~ 188 (346)
|+. ..+.| ..+ .+++.+|+++.
T Consensus 102 G~~~~~~~g~~~~~~~~~~-~~~l~~~l~~l 131 (133)
T 3fk8_A 102 GKVRYTTKGGELANARKMS-DQGIYDFFAKI 131 (133)
T ss_dssp SCEEEECCSCTTTTGGGSC-HHHHHHHHHHH
T ss_pred CCEEEEecCCcccccccCC-HHHHHHHHHHh
Confidence 874 34556 344 44788887653
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=103.03 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=75.5
Q ss_pred cEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEEc-------ChhhhhhCCCc
Q psy160 193 RIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKIQ-------DPQLAKRYSIK 260 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i~-------~~~~~~~~~i~ 260 (346)
.....+.++++..+.+ +++++|.||++||++|+.+.+.+ .++++.+. ++.++.++ +.+++++|+|.
T Consensus 13 f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~~~~~~l~~~~~v~ 90 (134)
T 2fwh_A 13 FTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVL 90 (134)
T ss_dssp CEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCC
T ss_pred cEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCcchHHHHHHHcCCC
Confidence 3335567788776654 78999999999999999999999 89998887 47777772 35789999999
Q ss_pred cccEEEEE-eCCeEE---EeecCccccccchhhhhhhc
Q psy160 261 TFPALVYF-RNGNPL---IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 261 ~~Pti~~~-~~g~~~---~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|++++| ++|+.+ .+.|..+.+. +..+++.
T Consensus 91 ~~Pt~~~~d~~G~~v~~~~~~G~~~~~~---l~~~l~~ 125 (134)
T 2fwh_A 91 GLPTILFFDGQGQEHPQARVTGFMDAET---FSAHLRD 125 (134)
T ss_dssp SSSEEEEECTTSCBCGGGCBCSCCCHHH---HHHHHHH
T ss_pred CCCEEEEECCCCCEeeeeeeeeccCHHH---HHHHHHh
Confidence 99999999 889875 6888776333 5555443
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-14 Score=105.40 Aligned_cols=87 Identities=24% Similarity=0.473 Sum_probs=73.2
Q ss_pred EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..++.+++++. ++++++++|.||++||++|+.+.|.++++++.+.+ ++.++.+ .+.+++++|++.++|++++|+
T Consensus 3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 81 (106)
T 2yj7_A 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDENPNTAAQYGIRSIPTLLLFK 81 (106)
Confidence 456788888764 56788999999999999999999999999999875 6777777 577899999999999999999
Q ss_pred CCeEE-EeecCcc
Q psy160 270 NGNPL-IFEGENK 281 (346)
Q Consensus 270 ~g~~~-~y~g~~~ 281 (346)
+|+.+ .+.|..+
T Consensus 82 ~g~~~~~~~g~~~ 94 (106)
T 2yj7_A 82 NGQVVDRLVGAQP 94 (106)
Confidence 88754 4667654
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=99.60 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=70.0
Q ss_pred cEEEccHHHHHHHHhc--cceEEEEEEcC-------CChhhHHHHHHHHHHHhhcCcCceEEEEE----------cChhh
Q psy160 193 RIELITRVMLETMVEE--TQYLAVYFYKL-------NCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQL 253 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~--~~~~lv~F~~~-------~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~ 253 (346)
.+...+.++|++.+.+ +++++|.||++ ||++|+.+.|.+.++++.+.+ ++.++.+ .+..+
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~~d~~~~~ 84 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDF 84 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhhhchhHHH
Confidence 4556788999987765 78999999999 999999999999999999875 7888887 24578
Q ss_pred hhhCCCccccEEEEEeCCeEEE
Q psy160 254 AKRYSIKTFPALVYFRNGNPLI 275 (346)
Q Consensus 254 ~~~~~i~~~Pti~~~~~g~~~~ 275 (346)
+++|+|+++||+++|+++..+.
T Consensus 85 ~~~~~i~~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 85 RKNLKVTAVPTLLKYGTPQKLV 106 (123)
T ss_dssp HHHHCCCSSSEEEETTSSCEEE
T ss_pred HHHCCCCeeCEEEEEcCCceEe
Confidence 9999999999999998876543
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=93.99 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=61.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
|.||++||++|+++.|.++++++.+.. ++.++.++ +++++.+|+|+++||+++ +|.. .+.|..+. +.+.+++
T Consensus 6 v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~~-~~l~~~l 80 (85)
T 1nho_A 6 EVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-RFVGAPSR-EELFEAI 80 (85)
T ss_dssp EEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-EEECSSCC-HHHHHHH
T ss_pred EEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-EEccCCCH-HHHHHHH
Confidence 579999999999999999999998842 46665554 678999999999999998 7776 78887666 5888888
Q ss_pred hcc
Q psy160 78 TSQ 80 (346)
Q Consensus 78 ~~~ 80 (346)
.+.
T Consensus 81 ~~~ 83 (85)
T 1nho_A 81 NDE 83 (85)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=93.66 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=65.0
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
..++.||++||++|+++.|.++++++.+.+ ++.++.+| +++++++|||.++||+++ +|+. .+.|..+.+ ++.
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~~~-~l~ 77 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-RFVGAPSRE-ELF 77 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-EEECSSCCH-HHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-EEccCCCHH-HHH
Confidence 358999999999999999999999998853 36666654 678999999999999999 7776 788877644 899
Q ss_pred HHHhhc
Q psy160 183 QWLITQ 188 (346)
Q Consensus 183 ~fi~~~ 188 (346)
+++.+.
T Consensus 78 ~~l~~~ 83 (85)
T 1nho_A 78 EAINDE 83 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=93.95 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=65.3
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEV 181 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i 181 (346)
.+.++.||++||++|+++.|.++++++.+.+ ++.++.+| +++++++|||.++||+++ +|+. .+.|..+.+ ++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~~~-~l 77 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-EFIGAPTKE-AL 77 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-ECCSSSSSH-HH
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-eeecCCCHH-HH
Confidence 4579999999999999999999999998753 36666554 678999999999999999 7766 788877644 89
Q ss_pred HHHHhhc
Q psy160 182 LQWLITQ 188 (346)
Q Consensus 182 ~~fi~~~ 188 (346)
.+++.+.
T Consensus 78 ~~~l~~~ 84 (85)
T 1fo5_A 78 VEAIKKR 84 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888753
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-13 Score=124.61 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=78.1
Q ss_pred cCcEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-------ceEEEEE---cChhhhhhCC
Q psy160 191 EDRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-------GIHMVKI---QDPQLAKRYS 258 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-------~i~~~~i---~~~~~~~~~~ 258 (346)
+..+..++.++|++++.. .++++|.|||+||++|+.+.|.++++++.+.+. .+.|+.| .+++++++|+
T Consensus 22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~ 101 (470)
T 3qcp_A 22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD 101 (470)
T ss_dssp CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence 346788999999987654 378999999999999999999999999998621 4889988 6789999999
Q ss_pred CccccEEEEEeCCe---EEEeecCcccc
Q psy160 259 IKTFPALVYFRNGN---PLIFEGENKIL 283 (346)
Q Consensus 259 i~~~Pti~~~~~g~---~~~y~g~~~~~ 283 (346)
|.++||+++|++|+ ...|.|.++.+
T Consensus 102 V~~~PTlilf~~gg~~~~~~y~G~r~~e 129 (470)
T 3qcp_A 102 INFVPRLFFFYPRDSCRSNEECGTSSLE 129 (470)
T ss_dssp CCSSCEEEEEEESSCCCTTSCCCCCCEE
T ss_pred CCccCeEEEEECCCceEEEEeeCCCCHH
Confidence 99999999997553 45688887643
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=89.29 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=61.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCc-chhHHHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDL-SEEEEVLQWL 185 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~-~~~~~i~~fi 185 (346)
.|.||++||++|+.+.|.++++++.+.. ++.++.+++.+++++|||.++||+++ +|+.... |.. + .+++.+++
T Consensus 3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~Pt~~~--~G~~~~~-G~~~~-~~~l~~~l 76 (77)
T 1ilo_A 3 KIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIKEMDQILEAGLTALPGLAV--DGELKIM-GRVAS-KEEIKKIL 76 (77)
T ss_dssp EEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEECSHHHHHHHTCSSSSCEEE--TTEEEEC-SSCCC-HHHHHHHC
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEecCHHHHHHCCCCcCCEEEE--CCEEEEc-CCCCC-HHHHHHHh
Confidence 5899999999999999999999998753 48888888899999999999999998 7775444 876 5 44788775
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=91.91 Aligned_cols=68 Identities=26% Similarity=0.404 Sum_probs=59.8
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
.+.++.||++||++|+.+.|.++++++++.+ ++.+..+ ++++++++|+++++||+++ +|+. .+.|..+
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~ 73 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-EFIGAPT 73 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-ECCSSSS
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-eeecCCC
Confidence 3678999999999999999999999999885 7888887 5678999999999999998 8887 7888754
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-11 Score=116.74 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=121.4
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCc--eeeecCCCCCHHHHHHHHhc
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQV--PLLYDGDLFDEEKILTWLTS 79 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~--~~~y~G~~~~~~~i~~~i~~ 79 (346)
.++.+.|..|+++...++++++..++ |.+...++. . ...|++.+.++|. .+.|.|-+.-+ ++..|+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~s~~--i~~~~~~~~------~-~~~p~~~~~~~~~~~~i~f~g~p~g~-e~~s~~~~ 93 (521)
T 1hyu_A 24 IATLDDSAKSAEIKELLAEIAELSDK--VTFKEDNTL------P-VRKPSFLITNPGSQQGPRFAGSPLGH-EFTSLVLA 93 (521)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTTCTT--EEEEECTTS------S-SCSSEEEEECTTCCCSCEEESCCCGG-GHHHHHHH
T ss_pred EEEeCCCcchHHHHHHHHHHHHhCCc--eEEEEcCCc------c-cCCCEEEEecCCCcceEEEeccCcch-hHHHHHHH
Confidence 35667899999999888888776543 444322211 0 5679999997763 46799987775 66666543
Q ss_pred cCCccccCceeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC
Q psy160 80 QDVFEIKNEIEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 80 ~~~p~~~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
-... +..-..++++.++.+... .+..++.|+++||++|+.+.|.+++++..+. ++.+..+| +++++.+|+|.
T Consensus 94 l~~~--~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~~~~~~~~i~ 169 (521)
T 1hyu_A 94 LLWT--GGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVM 169 (521)
T ss_dssp HHHH--TTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCC
T ss_pred HHhh--cCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhHHHHHHhCCC
Confidence 2111 112346788888877544 3556899999999999999999999998764 46776654 78999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.||+++ +|+.+ ..|..+ .++|.+|+...
T Consensus 170 svPt~~i--~g~~~-~~G~~~-~~~l~~~l~~~ 198 (521)
T 1hyu_A 170 GVPAVFV--NGKEF-GQGRMT-LTEIVAKVDTG 198 (521)
T ss_dssp SSSEEEE--TTEEE-EESCCC-HHHHHHHHCCS
T ss_pred ccCEEEE--CCEEE-ecCCCC-HHHHHHHHhhc
Confidence 9999977 77654 348776 44899998765
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-12 Score=99.06 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=61.2
Q ss_pred HhccceEEEEEEcCCChhhHHHHHHHH--HHHhhcCcCceEEEEE------cChhhhhhCCC---ccccEEEEE-eCCeE
Q psy160 206 VEETQYLAVYFYKLNCNICDQILEGLE--KVDDECDIYGIHMVKI------QDPQLAKRYSI---KTFPALVYF-RNGNP 273 (346)
Q Consensus 206 ~~~~~~~lv~F~~~~c~~c~~~~~~~~--~la~~~~~~~i~~~~i------~~~~~~~~~~i---~~~Pti~~~-~~g~~ 273 (346)
..++++++|.||++||++|+.+.|.+. ++++.+.+ ++.++.+ .+.+++++|+| .++||+++| ++|+.
T Consensus 26 ~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~ 104 (133)
T 3fk8_A 26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV 104 (133)
T ss_dssp HHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred HhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence 356889999999999999999999999 99988864 6777777 35789999999 999999999 78875
Q ss_pred E-Eeec
Q psy160 274 L-IFEG 278 (346)
Q Consensus 274 ~-~y~g 278 (346)
+ .+.|
T Consensus 105 ~~~~~g 110 (133)
T 3fk8_A 105 RYTTKG 110 (133)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 4 3455
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-12 Score=96.24 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=63.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc---cCCCcEEEEeCC---hhhHHhhCCCCcceEEEEecCC-cceecCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET---DNMDITFVKMAD---PRYARKWGVTKLPAVVYFRHRF-PSIYRGDL 175 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~---~~~~i~~~~~~~---~~l~~~~~i~~~Ptl~~~~~g~-~~~y~g~~ 175 (346)
+...++|+|||+||++|+.+.+.+....+.. ....+..++++. ..++.+++|.+.||+++|++|+ ..+..|..
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~ 96 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP 96 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence 3467899999999999999987654433321 123455566653 4799999999999999999998 45688988
Q ss_pred chhHHHHHHHhhc
Q psy160 176 SEEEEVLQWLITQ 188 (346)
Q Consensus 176 ~~~~~i~~fi~~~ 188 (346)
..+ .+..|+...
T Consensus 97 ~~~-~f~~~L~~~ 108 (116)
T 3dml_A 97 GED-FFWPMLARL 108 (116)
T ss_dssp CHH-HHHHHHHHH
T ss_pred CHH-HHHHHHHHH
Confidence 855 888888764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-10 Score=109.32 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=116.5
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cceecCCcchhHHHH
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEEEVL 182 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~~i~ 182 (346)
+++-+.++...|..|.++..-+++++..-. ++.+...+.. . ...|++.+.++|+ .++|.|-..-. ++.
T Consensus 19 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~------~-~~~p~~~~~~~~~~~~i~f~g~p~g~-e~~ 88 (521)
T 1hyu_A 19 KPVELIATLDDSAKSAEIKELLAEIAELSD--KVTFKEDNTL------P-VRKPSFLITNPGSQQGPRFAGSPLGH-EFT 88 (521)
T ss_dssp SCEEEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEECTTS------S-SCSSEEEEECTTCCCSCEEESCCCGG-GHH
T ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhCC--ceEEEEcCCc------c-cCCCEEEEecCCCcceEEEeccCcch-hHH
Confidence 456556666679999999988888876533 2555333211 0 5679999998775 57898866534 566
Q ss_pred HHHhhccc-cCcEEEccHHHHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC
Q psy160 183 QWLITQKT-EDRIELITRVMLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY 257 (346)
Q Consensus 183 ~fi~~~~~-~~~v~~l~~~~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~ 257 (346)
.|+..... ...-..++.+.++.+.+. .+..++.|+++||++|+.+.|.+++++..+. ++.+..+ .+++++++|
T Consensus 89 s~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~~~~~~~ 166 (521)
T 1hyu_A 89 SLVLALLWTGGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITER 166 (521)
T ss_dssp HHHHHHHHHTTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhHHHHHHh
Confidence 66655322 111235677777777543 4566888999999999999999999998875 6888777 678999999
Q ss_pred CCccccEEEEEeCCeEEEeecCcc
Q psy160 258 SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+|.+.|++++ +|+.+ ..|..+
T Consensus 167 ~i~svPt~~i--~g~~~-~~G~~~ 187 (521)
T 1hyu_A 167 NVMGVPAVFV--NGKEF-GQGRMT 187 (521)
T ss_dssp TCCSSSEEEE--TTEEE-EESCCC
T ss_pred CCCccCEEEE--CCEEE-ecCCCC
Confidence 9999999977 88765 346654
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=99.13 Aligned_cols=95 Identities=16% Similarity=0.335 Sum_probs=71.1
Q ss_pred EccHHHHHHHH----hccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE--c---ChhhhhhCCCcccc
Q psy160 196 LITRVMLETMV----EETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI--Q---DPQLAKRYSIKTFP 263 (346)
Q Consensus 196 ~l~~~~~~~~~----~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i--~---~~~~~~~~~i~~~P 263 (346)
.++..++++.+ .++++++|.||++||++|+.+.|.+ .++++.+.. .+.++.+ + +..++++|+|.++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~P 88 (130)
T 2kuc_A 10 AFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEKGEGVELRKKYGVHAYP 88 (130)
T ss_dssp CCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred CcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCCcchHHHHHHcCCCCCC
Confidence 34556666644 3678999999999999999999999 677766654 6777777 2 45789999999999
Q ss_pred EEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 264 ALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 264 ti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
+++++ ++|+.+ .+.|..+.+. +..+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~---l~~~l~~ 118 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPE---LLKKVKL 118 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHH---HHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHH---HHHHHHH
Confidence 99999 688754 5778765322 4455544
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=101.79 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=67.0
Q ss_pred ecCHHHHHHHH----hcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC---Chhh------------
Q psy160 91 EVNRRMLDKLL----EENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA---DPRY------------ 148 (346)
Q Consensus 91 ~l~~~~~~~~~----~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~---~~~l------------ 148 (346)
..+..++++.+ .++++++|.|||+||++|+.+.+.+ .++.+.+++ ++.++.++ ...+
T Consensus 30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~ 108 (172)
T 3f9u_A 30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGTE 108 (172)
T ss_dssp CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcchh
Confidence 34445555554 5678999999999999999984443 444443322 35665554 2222
Q ss_pred --------------HHhhCCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 149 --------------ARKWGVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 149 --------------~~~~~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++|+|.++||++++ ++|+ ...+.|...+.+++.+++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 789999999999999 5787 445778886344888888764
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=98.99 Aligned_cols=94 Identities=7% Similarity=0.072 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCcEEEEeC-Chh-hHHhhCC--CCcceEEEE-ecCC
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKMA-DPR-YARKWGV--TKLPAVVYF-RHRF 167 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~~-~~~-l~~~~~i--~~~Ptl~~~-~~g~ 167 (346)
++.++....++++++|.||++||++|+.+.|.|.++++.. .+..+..+.++ .+. ++.+|++ .++||+++| ++|+
T Consensus 36 ~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~ 115 (164)
T 1sen_A 36 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK 115 (164)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCC
Confidence 3677777788899999999999999999999999987655 23456666665 334 7888988 669999999 6787
Q ss_pred c-ceecCC----------cchhHHHHHHHhhc
Q psy160 168 P-SIYRGD----------LSEEEEVLQWLITQ 188 (346)
Q Consensus 168 ~-~~y~g~----------~~~~~~i~~fi~~~ 188 (346)
. ..+.|. .+ .+++++++++.
T Consensus 116 ~~~~~~G~~~~~~~~~~~~~-~~~l~~~l~~~ 146 (164)
T 1sen_A 116 VHPEIINENGNPSYKYFYVS-AEQVVQGMKEA 146 (164)
T ss_dssp BCTTCCCTTSCTTSTTCCCS-HHHHHHHHHHH
T ss_pred EEEEEeCCCCccchhcccCC-HHHHHHHHHHH
Confidence 4 345663 33 44788877664
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-12 Score=102.85 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEE--e
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYF--R 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~--~ 164 (346)
+.+.....++++++|.||++||++|+.+.|.+ .++++.+.. ++.++.++ ...++++|+|.++||+++| +
T Consensus 10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~ 88 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK 88 (130)
Confidence 34455555678999999999999999999999 888877644 25555544 4679999999999999999 5
Q ss_pred cCCc---ceecCCcchhHHHHHHHhhcc
Q psy160 165 HRFP---SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 165 ~g~~---~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|+. ..+.|..+.+ .+.+++.+..
T Consensus 89 ~G~~~~~~~~~G~~~~~-~l~~~l~~~~ 115 (130)
T 2lst_A 89 AGAWEEVGRLFGSRPRA-EFLKELRQVC 115 (130)
Confidence 6764 4578877744 7888887654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.5e-12 Score=94.94 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhh---cccCCeEEEcCC---hHHHHhcCCCCCCeEEEEeCCcee-eecCCCCCHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDA---DQYGIDMVKISD---TEAAAKYNIINLPSLVYFRKQVPL-LYDGDLFDEEKI 73 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~---~~~~i~~~~~~~---~~~c~~~~i~~~Ptl~~f~~~~~~-~y~G~~~~~~~i 73 (346)
|+|||+||++|+.+.+++....+.. ....+..++++. .+++.+|+|.+.||+++|++|..+ ...|.... +.+
T Consensus 23 V~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~-~~f 101 (116)
T 3dml_A 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPGE-DFF 101 (116)
T ss_dssp EEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCCH-HHH
T ss_pred EEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCCH-HHH
Confidence 6899999999999987665443322 123455556654 478999999999999999999765 46776665 588
Q ss_pred HHHHhc
Q psy160 74 LTWLTS 79 (346)
Q Consensus 74 ~~~i~~ 79 (346)
..|+..
T Consensus 102 ~~~L~~ 107 (116)
T 3dml_A 102 WPMLAR 107 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=97.71 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=65.0
Q ss_pred EccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCC---CccccEEEEE
Q psy160 196 LITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYS---IKTFPALVYF 268 (346)
Q Consensus 196 ~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~---i~~~Pti~~~ 268 (346)
.++.+.+..+.+ .+++++|.|||+||++|+.+.|.+.++++.+. ++.+..+ .+++++.+|. +.++||++++
T Consensus 40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~ 117 (167)
T 1z6n_A 40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVL 117 (167)
T ss_dssp CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence 344555554433 45789999999999999999999999998875 5778877 4667888887 9999999999
Q ss_pred eCC-eEEEeecCcc
Q psy160 269 RNG-NPLIFEGENK 281 (346)
Q Consensus 269 ~~g-~~~~y~g~~~ 281 (346)
++| +.+...|.+.
T Consensus 118 ~~~G~~~~~~g~~p 131 (167)
T 1z6n_A 118 DEEFNLLGRFVERP 131 (167)
T ss_dssp CTTCCEEEEEESSC
T ss_pred CCCCCEEEEEcCCC
Confidence 875 6554446654
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-12 Score=102.27 Aligned_cols=84 Identities=13% Similarity=0.335 Sum_probs=69.9
Q ss_pred cEEEc-cHHHHHHHHhc----cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccE
Q psy160 193 RIELI-TRVMLETMVEE----TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~~----~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pt 264 (346)
.+..+ +.+++++.+.. +++++|.||++||++|+.+.|.+.++++.+. ++.++.+ .+.+++++|+|.++||
T Consensus 15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt 92 (130)
T 1wmj_A 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKEVAEKYNVEAMPT 92 (130)
T ss_dssp SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTSGGGHHHHTCCSSCC
T ss_pred ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHcCCCccce
Confidence 34455 56888887653 7899999999999999999999999999986 5777777 5778999999999999
Q ss_pred EEEEeCCeEEE-eec
Q psy160 265 LVYFRNGNPLI-FEG 278 (346)
Q Consensus 265 i~~~~~g~~~~-y~g 278 (346)
++++++|+.+. +.|
T Consensus 93 ~~~~~~g~~~~~~~g 107 (130)
T 1wmj_A 93 FLFIKDGAEADKVVG 107 (130)
T ss_dssp CCBCTTTTCCBCCCT
T ss_pred EEEEeCCeEEEEEeC
Confidence 99999997543 556
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-12 Score=101.02 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=64.3
Q ss_pred HHHHHHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEE--eC
Q psy160 201 MLETMVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYF--RN 270 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~--~~ 270 (346)
.++....++++++|.||++||++|+.+.|.+ .++++.+.+ ++.++.+ .+..++++|+|.++||+++| ++
T Consensus 11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~ 89 (130)
T 2lst_A 11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKA 89 (130)
Confidence 3444455678999999999999999999999 888888775 5777766 34678999999999999999 66
Q ss_pred CeE---EEeecCcc
Q psy160 271 GNP---LIFEGENK 281 (346)
Q Consensus 271 g~~---~~y~g~~~ 281 (346)
|+. ..+.|..+
T Consensus 90 G~~~~~~~~~G~~~ 103 (130)
T 2lst_A 90 GAWEEVGRLFGSRP 103 (130)
Confidence 775 34777665
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=94.27 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhh--ccCCCcEEEEeC--ChhhHHhhCCCCcceEEEEe-cCCc
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGE--TDNMDITFVKMA--DPRYARKWGVTKLPAVVYFR-HRFP 168 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~--~~~~~i~~~~~~--~~~l~~~~~i~~~Ptl~~~~-~g~~ 168 (346)
++.++....++++++|.|||+||++|+.+.|.+.+.... +.+.++..+++| ..+++.++++.++||+++|. +|+.
T Consensus 34 ~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~ 113 (151)
T 3ph9_A 34 EEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTV 113 (151)
T ss_dssp HHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCB
T ss_pred HHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCE
Confidence 355666667789999999999999999999998864322 112246777775 45678899999999999998 7773
Q ss_pred -ceecCC
Q psy160 169 -SIYRGD 174 (346)
Q Consensus 169 -~~y~g~ 174 (346)
.+..|.
T Consensus 114 v~~~~G~ 120 (151)
T 3ph9_A 114 RADIAGR 120 (151)
T ss_dssp CTTCCCS
T ss_pred EEEEeCC
Confidence 335554
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=109.69 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-------ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-------DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKI 73 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i 73 (346)
|+||||||+||+++.|.|++++++++ .++++ ++++|++|+|+++||+++ +|+. |.|..+. +++
T Consensus 202 V~F~A~WC~~Ck~l~p~le~lA~~l~-----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~--~~G~~~~-~~L 271 (291)
T 3kp9_A 202 TMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT--YTGVRSL-EAL 271 (291)
T ss_dssp EEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE--EESCCCH-HHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHcC-----EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE--ecCCCCH-HHH
Confidence 68999999999999999999998763 33333 589999999999999554 7765 8897666 589
Q ss_pred HHHHhccC
Q psy160 74 LTWLTSQD 81 (346)
Q Consensus 74 ~~~i~~~~ 81 (346)
.+|+.-+.
T Consensus 272 ~~~l~~~~ 279 (291)
T 3kp9_A 272 AVASGYPL 279 (291)
T ss_dssp HHHTCCCC
T ss_pred HHHHCCCC
Confidence 99976543
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=93.86 Aligned_cols=89 Identities=11% Similarity=0.205 Sum_probs=66.6
Q ss_pred HHHHHhcCCcEEEEEE-CCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC--C------------hhhHHhhCCCCcc
Q psy160 97 LDKLLEENEFVTVFFY-ETDHKDSVKVLERL---EKIDGETDNMDITFVKMA--D------------PRYARKWGVTKLP 158 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~-~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~--~------------~~l~~~~~i~~~P 158 (346)
+.....++++++|.|| ++||++|+.+.|.+ .++++... .++.++.+| . ..++++|+|.++|
T Consensus 40 ~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~P 118 (154)
T 2ju5_A 40 LEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFP 118 (154)
T ss_dssp HHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCC
Confidence 3333345789999999 99999999999999 66655542 236666665 2 3789999999999
Q ss_pred eEEEE-ecCCc-ceecCCc--chhHHHHHHHhhc
Q psy160 159 AVVYF-RHRFP-SIYRGDL--SEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~-~~g~~-~~y~g~~--~~~~~i~~fi~~~ 188 (346)
|++++ ++|+. ..+ |.. + .+.+.+++.+.
T Consensus 119 t~~~~d~~G~~~~~~-G~~~~~-~~~l~~~l~~~ 150 (154)
T 2ju5_A 119 ELVFIDAEGKQLARM-GFEPGG-GAAYVSKVKSA 150 (154)
T ss_dssp EEEEECTTCCEEEEE-CCCTTC-HHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEe-cCCCCC-HHHHHHHHHHH
Confidence 99999 57874 346 776 5 44788888764
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=96.91 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=67.2
Q ss_pred ecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhC---CCCcceEEEE
Q psy160 91 EVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWG---VTKLPAVVYF 163 (346)
Q Consensus 91 ~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~---i~~~Ptl~~~ 163 (346)
.++++.++.+.. ++++++|.|+|+||++|+.+.|.++++++.+. ++.++.++ +++++.+|+ +.++||+++|
T Consensus 40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~ 117 (167)
T 1z6n_A 40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVL 117 (167)
T ss_dssp CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEE
Confidence 456666665543 35788999999999999999999999998764 36677665 567888887 9999999999
Q ss_pred ecC-CcceecCCcchhHHHHHHHh
Q psy160 164 RHR-FPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 164 ~~g-~~~~y~g~~~~~~~i~~fi~ 186 (346)
.+| +....-|... . .+.+.+.
T Consensus 118 ~~~G~~~~~~g~~p-~-~~~~~i~ 139 (167)
T 1z6n_A 118 DEEFNLLGRFVERP-Q-AVLDGGP 139 (167)
T ss_dssp CTTCCEEEEEESSC-H-HHHHHCH
T ss_pred CCCCCEEEEEcCCC-H-HHHHhHH
Confidence 875 5433335544 2 3444444
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=89.42 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=68.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------------------------ChhhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------------------------DPRYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------------------------~~~l~~~~~i~~~ 157 (346)
.+++++|.||++||++|+.+.|.+.++++.+. ++.++.++ ...++++|+|.++
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 100 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ 100 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC
Confidence 46789999999999999999999999999886 46666543 3578999999999
Q ss_pred ceEEEE-ecCCcceec---CCcchhHHHHHHHhhc
Q psy160 158 PAVVYF-RHRFPSIYR---GDLSEEEEVLQWLITQ 188 (346)
Q Consensus 158 Ptl~~~-~~g~~~~y~---g~~~~~~~i~~fi~~~ 188 (346)
|+++++ ++|+...+. |..+. +++.+++.+.
T Consensus 101 P~~~lid~~G~i~~~~~~~g~~~~-~~l~~~l~~l 134 (136)
T 1lu4_A 101 PAFVFYRADGTSTFVNNPTAAMSQ-DELSGRVAAL 134 (136)
T ss_dssp SEEEEECTTSCEEEECCSSSCCCH-HHHHHHHHHC
T ss_pred CEEEEECCCCcEEEEEcCCCccCH-HHHHHHHHHH
Confidence 999999 467744788 87774 4898888764
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=95.06 Aligned_cols=101 Identities=12% Similarity=0.192 Sum_probs=72.4
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE---------------------------
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV--------------------------- 141 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~--------------------------- 141 (346)
+..++.+.+......+++++|.||++||++|+.+.|.+.++++.+...++.++
T Consensus 23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (164)
T 2h30_A 23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPK 102 (164)
T ss_dssp CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT
T ss_pred cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCc
Confidence 33344333332223567899999999999999999999999988633222222
Q ss_pred ---EeC-ChhhHHhhCCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhccc
Q psy160 142 ---KMA-DPRYARKWGVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 142 ---~~~-~~~l~~~~~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
..+ ...++++|+|.++|+++++ ++|+ ...+.|..+. +++.+++.+...
T Consensus 103 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~-~~l~~~i~~~~~ 156 (164)
T 2h30_A 103 LPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINE-AQALALIRNPNA 156 (164)
T ss_dssp SCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCH-HHHHHHHHCTTC
T ss_pred ceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCH-HHHHHHHHHHHH
Confidence 122 5679999999999999999 5677 4457787774 489999887643
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=91.34 Aligned_cols=82 Identities=10% Similarity=0.247 Sum_probs=67.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------------------------ChhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----------------------------DPRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------------------------~~~l~~~~~i 154 (346)
.+++++|.||++||++|+.+.|.+.++++.+...++.++.++ ...++++|+|
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 457899999999999999999999999999864456666553 3479999999
Q ss_pred CCcceEEEE-ecCC-cceecCCcchhHHHHHHH
Q psy160 155 TKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 155 ~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi 185 (346)
.++|+++++ ++|+ ...+.|..+.+ .+.+++
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~-~l~~~l 144 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAE-QLKEWT 144 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHH-HHHHHH
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHH-HHHHhh
Confidence 999999999 5677 34688887744 787776
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=90.74 Aligned_cols=86 Identities=8% Similarity=0.116 Sum_probs=68.1
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------------ChhhHHh
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------------DPRYARK 151 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------------~~~l~~~ 151 (346)
.++++++|.||++||++|+.+.|.+.++++.+.+. +.++.++ ...++++
T Consensus 27 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 105 (148)
T 2b5x_A 27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDA 105 (148)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHH
T ss_pred cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHH
Confidence 35689999999999999999999999999988553 5555442 3479999
Q ss_pred hCCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhcc
Q psy160 152 WGVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 152 ~~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|+|.++|+++++ ++|+ ...+.|..+.+ ++.+++.+..
T Consensus 106 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~~l 144 (148)
T 2b5x_A 106 FENEYVPAYYVFDKTGQLRHFQAGGSGMK-MLEKRVNRVL 144 (148)
T ss_dssp TCCCCSSEEEEECTTCBEEEEEESCSTTH-HHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCCcEEEEecCCCCHH-HHHHHHHHHH
Confidence 999999999999 5677 34577876644 7888877643
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=103.45 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceEEEEecC
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl~~~~~g 166 (346)
...+.+.+++.. +|+||||||+||+++.|.|++++++++ .++++ ++++|++++|+++||+++ +|
T Consensus 189 ~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p~le~lA~~l~-----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G 259 (291)
T 3kp9_A 189 AVGLAAHLRQIG--GTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NG 259 (291)
T ss_dssp HHHHHHHHHHTT--CEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT
T ss_pred HHHHHHHhCCCC--EEEEECCCCHHHHHHHHHHHHHHHHcC-----EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC
Confidence 345555555544 689999999999999999999997753 34443 679999999999999655 77
Q ss_pred CcceecCCcchhHHHHHHHhhccccCc
Q psy160 167 FPSIYRGDLSEEEEVLQWLITQKTEDR 193 (346)
Q Consensus 167 ~~~~y~g~~~~~~~i~~fi~~~~~~~~ 193 (346)
+ .|.|.++.+ ++.+|+.-....+.
T Consensus 260 ~--~~~G~~~~~-~L~~~l~~~~~~~~ 283 (291)
T 3kp9_A 260 R--TYTGVRSLE-ALAVASGYPLEEGR 283 (291)
T ss_dssp E--EEESCCCHH-HHHHHTCCCC----
T ss_pred E--EecCCCCHH-HHHHHHCCCCccch
Confidence 6 499998855 89999876554433
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=91.36 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=69.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---------------------------ChhhHHhhC--
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---------------------------DPRYARKWG-- 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---------------------------~~~l~~~~~-- 153 (346)
.+++++|.||++||++|+.+.|.+.++++.+...++.++.++ ...+++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 568899999999999999999999999999865566666543 235778899
Q ss_pred CCCcceEEEEe-cCC-cceecCCcchhHHHHHHHhhccc
Q psy160 154 VTKLPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 154 i~~~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
+.++|+++++. +|+ ...+.|..+.+ ++.+++++...
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~l~~ 140 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEK-SLTDAVKLAHS 140 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHH-HHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHH-HHHHHHHHHHH
Confidence 99999999984 576 45688888744 88888876543
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-10 Score=88.07 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=67.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------ChhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------DPRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------~~~l~~~~~i~~ 156 (346)
.+++++|.||++||++|+.+.|.+.++++.+. ++.++.++ ...++++|+|.+
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 101 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ 101 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC
Confidence 45789999999999999999999999999886 45555433 356899999999
Q ss_pred cceEEEEe-cCCcceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYFR-HRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+++++. +|+...+.|..+.+ ++.+++.+.
T Consensus 102 ~P~~~~id~~g~i~~~~g~~~~~-~l~~~l~~~ 133 (136)
T 1zzo_A 102 QPAYAFVDPHGNVDVVRGRMSQD-ELTRRVTAL 133 (136)
T ss_dssp SSEEEEECTTCCEEEEESCCCHH-HHHHHHHHH
T ss_pred CceEEEECCCCCEEEEecCCCHH-HHHHHHHHH
Confidence 99999995 67744788887744 888888764
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-11 Score=96.13 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=57.9
Q ss_pred HHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhh--cCcCceEEEEE--cChhhhhhCCCccccEEEEEe-CCeEEE
Q psy160 201 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDE--CDIYGIHMVKI--QDPQLAKRYSIKTFPALVYFR-NGNPLI 275 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~--~~~~~i~~~~i--~~~~~~~~~~i~~~Pti~~~~-~g~~~~ 275 (346)
.++...+++++++|.|||+||++|+.|.|.+.+.++. +.+.++..+.+ +..+.+..+++.++||+++|+ +|+.+.
T Consensus 36 al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~ 115 (151)
T 3ph9_A 36 GLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRA 115 (151)
T ss_dssp HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCT
T ss_pred HHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEE
Confidence 3445566789999999999999999999999865322 11114555666 345678899999999999998 887542
Q ss_pred -eecC
Q psy160 276 -FEGE 279 (346)
Q Consensus 276 -y~g~ 279 (346)
..|.
T Consensus 116 ~~~G~ 120 (151)
T 3ph9_A 116 DIAGR 120 (151)
T ss_dssp TCCCS
T ss_pred EEeCC
Confidence 3444
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=85.42 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=59.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC-ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS-DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
+.|+++||+.|+.+.+.|++++++++ ..+..+.++ ++++..+|+++ .|++++|.+|..+ ..|..+. +.|.+||
T Consensus 33 v~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v-~~g~~~~-~~L~~~L 106 (107)
T 2fgx_A 33 VVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL-CHYFLDS-DVIGAYL 106 (107)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE-ECSSCCC-HHHHHHH
T ss_pred EEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE-EecCCCH-HHHHHHh
Confidence 47999999999999999999988763 334445665 78999999997 9999999999876 4576666 4888876
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=95.12 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=64.6
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHH-H--HHHHhhcCcCceEEEEE---cChhhhhhC--------CCcc
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEG-L--EKVDDECDIYGIHMVKI---QDPQLAKRY--------SIKT 261 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~-~--~~la~~~~~~~i~~~~i---~~~~~~~~~--------~i~~ 261 (346)
....+.++....++++++|.||++||++|+.|.+. | .++++.+++ ++.++++ +.+++.+.| ++.+
T Consensus 26 ~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g 104 (173)
T 3ira_A 26 PWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGRGG 104 (173)
T ss_dssp CSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence 34578888888889999999999999999999983 3 466776664 6778888 567888888 9999
Q ss_pred ccEEEEEe-CCeEEE
Q psy160 262 FPALVYFR-NGNPLI 275 (346)
Q Consensus 262 ~Pti~~~~-~g~~~~ 275 (346)
+|+++++. +|+++.
T Consensus 105 ~Pt~v~l~~dG~~v~ 119 (173)
T 3ira_A 105 WPLNIIMTPGKKPFF 119 (173)
T ss_dssp SSEEEEECTTSCEEE
T ss_pred CcceeeECCCCCcee
Confidence 99999996 787653
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-10 Score=91.80 Aligned_cols=74 Identities=22% Similarity=0.491 Sum_probs=58.3
Q ss_pred HhccceEEEEEE-cCCChhhHHHHHHH---HHHHhhcCcCceEEEEE---cC-----------hhhhhhCCCccccEEEE
Q psy160 206 VEETQYLAVYFY-KLNCNICDQILEGL---EKVDDECDIYGIHMVKI---QD-----------PQLAKRYSIKTFPALVY 267 (346)
Q Consensus 206 ~~~~~~~lv~F~-~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i---~~-----------~~~~~~~~i~~~Pti~~ 267 (346)
...+++++|.|| ++||++|+.+.|.+ .++++.+.. ++.++.+ .. ..++++|+|.++||+++
T Consensus 44 ~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 122 (154)
T 2ju5_A 44 KQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVF 122 (154)
T ss_dssp HHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred HhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEE
Confidence 345789999999 99999999999999 677665543 6777777 22 37899999999999999
Q ss_pred E-eCCeEEEeecCc
Q psy160 268 F-RNGNPLIFEGEN 280 (346)
Q Consensus 268 ~-~~g~~~~y~g~~ 280 (346)
+ ++|+.+...|..
T Consensus 123 ~d~~G~~~~~~G~~ 136 (154)
T 2ju5_A 123 IDAEGKQLARMGFE 136 (154)
T ss_dssp ECTTCCEEEEECCC
T ss_pred EcCCCCEEEEecCC
Confidence 9 788755433655
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-10 Score=89.11 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=68.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-------------------------C-ChhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-------------------------A-DPRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-------------------------~-~~~l~~~~~i~~ 156 (346)
.+++++|.|+++||++|+...|.+.++++.+...++.++.+ + ...+++.|+|.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 56889999999999999999999999999986555555432 2 567999999999
Q ss_pred cceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+++++ ++|+ ...|.|..+.+ .+.+++.+.
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~l 139 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFG-KLYQEIDTA 139 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHH-HHHHHHHHH
T ss_pred cCeEEEECCCCcEEEEEcCCCCHH-HHHHHHHHH
Confidence 9999999 5677 44588877644 788887764
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=84.27 Aligned_cols=76 Identities=8% Similarity=0.125 Sum_probs=62.3
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHH
Q psy160 106 FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQW 184 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~f 184 (346)
..++.|+++||++|+.+.|.+++++.++. ..+..++++ ++.++.+|+++ .|++++|.+|+.. ..|..+.+ .|.+|
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v-~~g~~~~~-~L~~~ 105 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL-CHYFLDSD-VIGAY 105 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE-ECSSCCCH-HHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE-EecCCCHH-HHHHH
Confidence 46999999999999999999999988753 446666666 78999999997 9999999988765 45776644 78887
Q ss_pred H
Q psy160 185 L 185 (346)
Q Consensus 185 i 185 (346)
+
T Consensus 106 L 106 (107)
T 2fgx_A 106 L 106 (107)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.6e-10 Score=88.96 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=68.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------ChhhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------DPRYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------~~~l~~~~~i~~~ 157 (346)
.+++++|.||++||++|+.+.|.+.++++.+...++.++.+ + ...+++.|+|.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 45789999999999999999999999999886544555544 3 2378999999999
Q ss_pred ceEEEE-ecCC-cceecCCcchhHHHHHHHhhccc
Q psy160 158 PAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 158 Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
|+++++ ++|+ ...+.|..+. +.+.+++.....
T Consensus 105 P~~~lid~~G~i~~~~~G~~~~-~~l~~~l~~ll~ 138 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMTE-SMIHDYMNLIKP 138 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCCH-HHHHHHHHHHSC
T ss_pred CeEEEECCCCcEEEEEeCCCCH-HHHHHHHHHHHh
Confidence 999999 5676 4457788764 488888877543
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=95.31 Aligned_cols=84 Identities=14% Similarity=0.232 Sum_probs=58.9
Q ss_pred ccHHHHHHHH----hccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE---cChhh-------------
Q psy160 197 ITRVMLETMV----EETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI---QDPQL------------- 253 (346)
Q Consensus 197 l~~~~~~~~~----~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i---~~~~~------------- 253 (346)
.+..++++.+ .++++++|.|||+||++|+.+.+.+ .++.+.+++ ++.++.+ +..++
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~ 109 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGTER 109 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcchhh
Confidence 3445555543 4678999999999999999975444 555555543 5677776 22222
Q ss_pred -------------hhhCCCccccEEEEE-eCCeEE-EeecCcc
Q psy160 254 -------------AKRYSIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 254 -------------~~~~~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+++|+|.++||++++ ++|+.+ .+.|...
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~ 152 (172)
T 3f9u_A 110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDE 152 (172)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCC
T ss_pred hhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCC
Confidence 788999999999999 688754 3556664
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.1e-10 Score=87.12 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=62.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-------------------------ChhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-------------------------DPQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-------------------------~~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++++++...++.++.+ . +..+++.|++
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 56799999999999999999999999999998447888877 1 3478999999
Q ss_pred ccccEEEEE-eCCeEE-EeecCcc
Q psy160 260 KTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 260 ~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
.++|+++++ ++|+.+ .+.|..+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~ 136 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMT 136 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcC
Confidence 999999999 678753 5677765
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=85.10 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=66.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------------C-ChhhHHh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------------A-DPRYARK 151 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------------~-~~~l~~~ 151 (346)
.+++++|.||++||++|+...|.+.++++.+. .++.++.+ + ...++++
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 99 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET 99 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence 46789999999999999999999999999853 34666655 1 4468999
Q ss_pred hCCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhh
Q psy160 152 WGVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 152 ~~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
|+|.++|+++++ ++|+ ...+.|..+. +++.+++.+
T Consensus 100 ~~v~~~P~~~lid~~G~i~~~~~g~~~~-~~l~~~l~~ 136 (138)
T 4evm_A 100 YGVRSYPTQAFIDKEGKLVKTHPGFMEK-DAILQTLKE 136 (138)
T ss_dssp TTCCSSSEEEEECTTCCEEEEEESCCCH-HHHHHHHHH
T ss_pred cCcccCCeEEEECCCCcEEEeecCCCcH-HHHHHHHHh
Confidence 999999999999 5677 4467888774 478888765
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.7e-10 Score=86.29 Aligned_cols=72 Identities=19% Similarity=0.423 Sum_probs=60.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c----------------------ChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q----------------------DPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~----------------------~~~~~~~~~i~~~ 262 (346)
.+++++|.||++||++|+.+.|.+.++++++. ++.++.+ . +..+++.|++.++
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 100 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ 100 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC
Confidence 45799999999999999999999999999987 5677766 2 4678999999999
Q ss_pred cEEEEE-eCCeEEEee---cCcc
Q psy160 263 PALVYF-RNGNPLIFE---GENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~~~y~---g~~~ 281 (346)
|+++++ ++|+...+. |..+
T Consensus 101 P~~~lid~~G~i~~~~~~~g~~~ 123 (136)
T 1lu4_A 101 PAFVFYRADGTSTFVNNPTAAMS 123 (136)
T ss_dssp SEEEEECTTSCEEEECCSSSCCC
T ss_pred CEEEEECCCCcEEEEEcCCCccC
Confidence 999999 578766677 6654
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-10 Score=94.73 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=59.4
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE-cChh-hhhhCCC--ccccEEEEE-eCCeE
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI-QDPQ-LAKRYSI--KTFPALVYF-RNGNP 273 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i-~~~~-~~~~~~i--~~~Pti~~~-~~g~~ 273 (346)
+.++.....+++++|.||++||++|+.+.|.|.++++.... ..+..+.+ .+.+ ++..|++ .++||+++| ++|+.
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 116 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 116 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence 55666667789999999999999999999999998766542 23444444 3444 7788888 669999999 78875
Q ss_pred EE-eecC
Q psy160 274 LI-FEGE 279 (346)
Q Consensus 274 ~~-y~g~ 279 (346)
+. +.|.
T Consensus 117 ~~~~~G~ 123 (164)
T 1sen_A 117 HPEIINE 123 (164)
T ss_dssp CTTCCCT
T ss_pred EEEEeCC
Confidence 43 4553
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=88.04 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=67.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhh---------------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKW--------------------------- 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~--------------------------- 152 (346)
.+++++|.||++||++|+.+.|.+.++++.+...++.++.++ ....++++
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 568899999999999999999999999999976567776653 34555555
Q ss_pred CCCCcceEEEE-ecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 153 GVTKLPAVVYF-RHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 153 ~i~~~Ptl~~~-~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
++.++|+++++ ++|+. ..+.|..+. +++.+++.+..
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~-~~l~~~l~~~l 150 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSK-ADFDRIVKMAL 150 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCH-HHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCH-HHHHHHHHHHH
Confidence 89999999998 56773 457788764 47888887654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=9.6e-10 Score=79.48 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
++.|+++||++|+.+.|.+++++..+ ..-++++ ++.++.+||++ .||+++ .+|+.+. |..+ .+.|.+++.
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~--g~~~-~~~L~~~l~ 73 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD--WPFD-APRLRAWLD 73 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE--SCCC-HHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe--CCCC-HHHHHHHHH
Confidence 78999999999999999999887652 2334555 78999999998 999998 7887653 7766 448999987
Q ss_pred hcc
Q psy160 187 TQK 189 (346)
Q Consensus 187 ~~~ 189 (346)
...
T Consensus 74 ~~~ 76 (87)
T 1ttz_A 74 AAP 76 (87)
T ss_dssp TCC
T ss_pred HHH
Confidence 654
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-09 Score=91.78 Aligned_cols=146 Identities=14% Similarity=0.221 Sum_probs=92.3
Q ss_pred cCCcEEEEEE-CCCChhHH-HHHHHHHHHHhhccCCCc-EEEEe--C-----------------------ChhhHHhhCC
Q psy160 103 ENEFVTVFFY-ETDHKDSV-KVLERLEKIDGETDNMDI-TFVKM--A-----------------------DPRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~-~~~~~~~~~a~~~~~~~i-~~~~~--~-----------------------~~~l~~~~~i 154 (346)
.++++++.|| +.||++|. .-+|.+.+++++++..++ .++-+ | ...+++.||+
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 111 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM 111 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence 4567888898 99999999 899999999988854455 44432 2 2346667776
Q ss_pred C-----------CcceEEEEecCC-cceecCCc--------chhHHHHHHHhhccccCcEEEccHHHHHHHHhccceEEE
Q psy160 155 T-----------KLPAVVYFRHRF-PSIYRGDL--------SEEEEVLQWLITQKTEDRIELITRVMLETMVEETQYLAV 214 (346)
Q Consensus 155 ~-----------~~Ptl~~~~~g~-~~~y~g~~--------~~~~~i~~fi~~~~~~~~v~~l~~~~~~~~~~~~~~~lv 214 (346)
. ..|+.+++++|+ ...+.|.. ...+++++.+.... + ....++
T Consensus 112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~----------------i--~~~~i~ 173 (241)
T 1nm3_A 112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH----------------Q--VQESIS 173 (241)
T ss_dssp EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS----------------C--CCCCEE
T ss_pred eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc----------------c--ccceEE
Confidence 5 236555556565 22233321 11234555444321 0 123366
Q ss_pred EEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC---hhhhhhCCCccccEEEEEeCCeE
Q psy160 215 YFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD---PQLAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 215 ~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~---~~~~~~~~i~~~Pti~~~~~g~~ 273 (346)
.|..+||++|++....+++..-. .....+ .+ .++.+.++..++|++. .+|+.
T Consensus 174 ly~~~~Cp~C~~a~~~L~~~~i~-----~~~~~i~~~~~~~~l~~~~g~~~vP~~~--~~g~~ 229 (241)
T 1nm3_A 174 IFTKPGCPFCAKAKQLLHDKGLS-----FEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKH 229 (241)
T ss_dssp EEECSSCHHHHHHHHHHHHHTCC-----CEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEE
T ss_pred EEECCCChHHHHHHHHHHHcCCc-----eEEEECCCchHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 78899999999998888876432 334444 22 3477788999999974 46754
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.1e-10 Score=91.24 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=62.9
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHH-H--HHHHhhccCCCcEEEEeC---ChhhHHhh--------CCCC
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLER-L--EKIDGETDNMDITFVKMA---DPRYARKW--------GVTK 156 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~-~--~~~a~~~~~~~i~~~~~~---~~~l~~~~--------~i~~ 156 (346)
..+++.|+....++++++|.|+++||++|+.|.|+ | .++++.++. ++.++++| .+++++.| |+.+
T Consensus 26 ~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g 104 (173)
T 3ira_A 26 PWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGRGG 104 (173)
T ss_dssp CSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence 44688899988999999999999999999999993 3 456666543 36677766 66888888 9999
Q ss_pred cceEEEEe-cCCcc
Q psy160 157 LPAVVYFR-HRFPS 169 (346)
Q Consensus 157 ~Ptl~~~~-~g~~~ 169 (346)
+||++++. +|+++
T Consensus 105 ~Pt~v~l~~dG~~v 118 (173)
T 3ira_A 105 WPLNIIMTPGKKPF 118 (173)
T ss_dssp SSEEEEECTTSCEE
T ss_pred CcceeeECCCCCce
Confidence 99999997 67643
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=87.85 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=67.3
Q ss_pred cCCcEEEEEECCCChhHHHH-HHHHHHHHhhccCCCcEEEEeC-------------------------------Ch----
Q psy160 103 ENEFVTVFFYETDHKDSVKV-LERLEKIDGETDNMDITFVKMA-------------------------------DP---- 146 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~-~~~~~~~a~~~~~~~i~~~~~~-------------------------------~~---- 146 (346)
.+++++|.||++||++|+.. +|.+.++++++...++.++.++ ..
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 46889999999999999995 9999999999965566666543 11
Q ss_pred -hhHHhhCCCCcceEEEEe-cCC-cceecCCcchhHHHHHHHhhcc
Q psy160 147 -RYARKWGVTKLPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 147 -~l~~~~~i~~~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
.+++.|+|.++|+++++. +|+ ...+.|..+.+ .+.+.+.+..
T Consensus 107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~-~l~~~i~~ll 151 (158)
T 3eyt_A 107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSEL-LLGAEIATLL 151 (158)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHH-HHHHHHHHHh
Confidence 589999999999999994 576 44577887744 7777776643
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=87.55 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=69.8
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe----------------------------CChhhHHhhCCCC
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM----------------------------ADPRYARKWGVTK 156 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~----------------------------~~~~l~~~~~i~~ 156 (346)
++++|.||++||++|+...|.+.++++.+ +..+..+.+ ....++++|+|.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 78999999999999999999999999998 555666666 3467899999999
Q ss_pred cceEEEE-ecCC-cceecCCcchhHHHHHHHhhcccc
Q psy160 157 LPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 157 ~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+|+++++ ++|+ ...+.|..+ .+++.+++++....
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~-~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAG-REALLDALLLAGAD 145 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCC-HHHHHHHHHHTTCC
T ss_pred ccEEEEECCCCCEEEEEcCCCC-HHHHHHHHHhccCc
Confidence 9998888 5676 445788877 44899999887653
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=90.36 Aligned_cols=99 Identities=13% Similarity=0.278 Sum_probs=68.7
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------ 248 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------ 248 (346)
.+..++++.+......+++++|.||++||++|+.+.|.+.+++++++..++.++.+
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP 101 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence 34445554443332356799999999999999999999999998864323333222
Q ss_pred -------cChhhhhhCCCccccEEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 249 -------QDPQLAKRYSIKTFPALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 249 -------~~~~~~~~~~i~~~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
.+..+++.|+|.++|+++++ ++|+.+ .+.|..+.+. +..+++.
T Consensus 102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~---l~~~i~~ 153 (164)
T 2h30_A 102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQ---ALALIRN 153 (164)
T ss_dssp TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHH---HHHHHHC
T ss_pred cceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHH---HHHHHHH
Confidence 35678999999999999999 678754 4667664322 5555554
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=86.45 Aligned_cols=86 Identities=12% Similarity=0.141 Sum_probs=67.8
Q ss_pred cCCcEEEEEECCCChhHHH-HHHHHHHHHhhccCCCcEEEEeC-------------------------------Chh---
Q psy160 103 ENEFVTVFFYETDHKDSVK-VLERLEKIDGETDNMDITFVKMA-------------------------------DPR--- 147 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~-~~~~~~~~a~~~~~~~i~~~~~~-------------------------------~~~--- 147 (346)
.+++++|.||++||++|+. +.|.+.++++.+.+.++.++.++ ...
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 4689999999999999999 69999999999966556666542 222
Q ss_pred ---hHHhhCCCCcceEEEEe-cCC-cceecCCcchhHHHHHHHhhcc
Q psy160 148 ---YARKWGVTKLPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 148 ---l~~~~~i~~~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++.|+|.++|+++++. +|+ ...+.|..+.+ .+.+.+.+..
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~-~l~~~i~~ll 154 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDF-VLGLLLGSLL 154 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHH-HHHHHHHHHH
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHH-HHHHHHHHHH
Confidence 89999999999999995 576 44577887744 7887776643
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-10 Score=86.29 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=60.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc--------------------------ChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ--------------------------DPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~--------------------------~~~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.+.+.++++++. ++.++.+. +..+++.|++.+
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 101 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ 101 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC
Confidence 45789999999999999999999999999987 56666661 356789999999
Q ss_pred ccEEEEE-eCCeEEEeecCcc
Q psy160 262 FPALVYF-RNGNPLIFEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~~~y~g~~~ 281 (346)
+|+++++ ++|+.+.+.|..+
T Consensus 102 ~P~~~~id~~g~i~~~~g~~~ 122 (136)
T 1zzo_A 102 QPAYAFVDPHGNVDVVRGRMS 122 (136)
T ss_dssp SSEEEEECTTCCEEEEESCCC
T ss_pred CceEEEECCCCCEEEEecCCC
Confidence 9999999 4787667788765
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=86.83 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=61.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-------------------------ChhhhhhCC--
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-------------------------DPQLAKRYS-- 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-------------------------~~~~~~~~~-- 258 (346)
.+++++|.||++||++|+.+.|.+.++++++++.++.++.+ + ...+++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 46799999999999999999999999999997657888877 2 234678899
Q ss_pred CccccEEEEE-eCCeE-EEeecCccc
Q psy160 259 IKTFPALVYF-RNGNP-LIFEGENKI 282 (346)
Q Consensus 259 i~~~Pti~~~-~~g~~-~~y~g~~~~ 282 (346)
+.++|+++++ ++|+. ..+.|..+.
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~ 128 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNE 128 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCH
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCH
Confidence 9999999888 57764 457787653
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=85.74 Aligned_cols=84 Identities=14% Similarity=0.368 Sum_probs=64.1
Q ss_pred ccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc---------------------------
Q psy160 197 ITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ--------------------------- 249 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~--------------------------- 249 (346)
++++.+......+++++|.||++||++|+.+.|.+.++++++.+ .+.++.+.
T Consensus 17 ~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
T 2b5x_A 17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF 95 (148)
T ss_dssp ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred ccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceE
Confidence 34443333223567999999999999999999999999999886 37777662
Q ss_pred ---ChhhhhhCCCccccEEEEE-eCCeEE-EeecCcc
Q psy160 250 ---DPQLAKRYSIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 250 ---~~~~~~~~~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+..+++.|+|.++|+++++ ++|+.+ .+.|..+
T Consensus 96 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~ 132 (148)
T 2b5x_A 96 VDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSG 132 (148)
T ss_dssp ECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCST
T ss_pred ECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCC
Confidence 2468999999999999999 688754 4667654
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=87.06 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=67.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Ch-----------------------hhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP-----------------------RYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~-----------------------~l~~~~~i~~ 156 (346)
.+++++|.|+++||++|+.+.|.+.++++.+.+.++.++.++ .. .+++.|+|.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 457899999999999999999999999998865556666543 22 6889999999
Q ss_pred cceEEEEe-cCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 157 LPAVVYFR-HRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 157 ~Ptl~~~~-~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|+++++. +|+. ..+.|..+.+ .+.+++.+..
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~~~ 142 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPSDP-KTAEKFNELL 142 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTTCH-HHHHHHHHHH
T ss_pred CCEEEEECCCCeEEEccCCCCCHH-HHHHHHHHHh
Confidence 99999997 6773 3466766544 7888887654
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-09 Score=85.21 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=67.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-Ch----------------------hhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-DP----------------------RYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~----------------------~l~~~~~i~~~ 157 (346)
.+++++|.|+++||++|+.+.|.+.++++.+...++.++.+ + .. .+++.|+|.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 45789999999999999999999999999996555555544 3 22 68889999999
Q ss_pred ceEEEE-ecCC-cceecCCcc-hhHHHHHHHhhccc
Q psy160 158 PAVVYF-RHRF-PSIYRGDLS-EEEEVLQWLITQKT 190 (346)
Q Consensus 158 Ptl~~~-~~g~-~~~y~g~~~-~~~~i~~fi~~~~~ 190 (346)
|+++++ ++|+ ...+.|... ..+++.+++.+...
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~ 142 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG 142 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence 999888 5676 344667543 23478888887654
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-08 Score=88.39 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=84.4
Q ss_pred Ceec-CCCChhhH-HHHHHHHHHHhhhcccCC-eEEEc--C-----------------------ChHHHHhcCCC-----
Q psy160 1 MYIN-DENCPECD-DILEELEHIDGDADQYGI-DMVKI--S-----------------------DTEAAAKYNII----- 47 (346)
Q Consensus 1 v~Fy-~~~C~~c~-~~~~~~~~~a~~~~~~~i-~~~~~--~-----------------------~~~~c~~~~i~----- 47 (346)
|.|| +.||++|. .-+|.|.++++.+++.|+ .++.+ | +.++++.||+.
T Consensus 38 l~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~ 117 (241)
T 1nm3_A 38 VFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKED 117 (241)
T ss_dssp EEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTT
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeeccc
Confidence 4687 99999999 889999999999877778 66554 2 22455555553
Q ss_pred ------CCCeEEEEeCCcee-eecCCC--------CCHHHHHHHHhccCCccccCceeecCHHHHHHHHhcCCcEEEEEE
Q psy160 48 ------NLPSLVYFRKQVPL-LYDGDL--------FDEEKILTWLTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVFFY 112 (346)
Q Consensus 48 ------~~Ptl~~f~~~~~~-~y~G~~--------~~~~~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~F~ 112 (346)
..|+.++.++|.-. .+.|.. ...+++++.+.... -....+++|.
T Consensus 118 ~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~---------------------i~~~~i~ly~ 176 (241)
T 1nm3_A 118 LGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH---------------------QVQESISIFT 176 (241)
T ss_dssp TTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS---------------------CCCCCEEEEE
T ss_pred ccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc---------------------cccceEEEEE
Confidence 12443333444321 122221 11123333322110 0134578899
Q ss_pred CCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----hhhHHhhCCCCcceEEEEecCC
Q psy160 113 ETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 113 ~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
.+||++|++....+++..- .+..+.++. ..+.+.+|..++|++.+ +|+
T Consensus 177 ~~~Cp~C~~a~~~L~~~~i-----~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~--~g~ 228 (241)
T 1nm3_A 177 KPGCPFCAKAKQLLHDKGL-----SFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGK 228 (241)
T ss_dssp CSSCHHHHHHHHHHHHHTC-----CCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTE
T ss_pred CCCChHHHHHHHHHHHcCC-----ceEEEECCCchHHHHHHHHhCCCCcCEEEE--CCE
Confidence 9999999999888876532 344555541 35777899999999853 553
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-09 Score=84.83 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=65.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c-------------------ChhhhhhCCCccccEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q-------------------DPQLAKRYSIKTFPAL 265 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~-------------------~~~~~~~~~i~~~Pti 265 (346)
.+++++|.||++||++|+.+.+.+.++++++.+.++.++.+ . +..+++.|++.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 45799999999999999999999999999998557888877 2 4688999999999998
Q ss_pred EEE-eCCeE-EEeecCccccccchh
Q psy160 266 VYF-RNGNP-LIFEGENKILKGTYI 288 (346)
Q Consensus 266 ~~~-~~g~~-~~y~g~~~~~~~~~~ 288 (346)
+++ ++|+. ..+.|....+....+
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~ 144 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVV 144 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHH
T ss_pred EEEcCCCCEEEEEeCCCccchHHHH
Confidence 877 67874 457787765554433
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=84.81 Aligned_cols=74 Identities=15% Similarity=0.366 Sum_probs=60.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---c----------------------ChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---Q----------------------DPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~----------------------~~~~~~~~~i~~~ 262 (346)
.+++++|.||++||++|+.+.|.+.++.+++.+.++.++.+ . +..+++.|+|.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 45799999999999999999999999999987545777776 2 3478999999999
Q ss_pred cEEEEE-eCCeEE-EeecCcc
Q psy160 263 PALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|+++++ ++|+.+ .+.|..+
T Consensus 105 P~~~lid~~G~i~~~~~G~~~ 125 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMT 125 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCC
T ss_pred CeEEEECCCCcEEEEEeCCCC
Confidence 999999 688754 4667654
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=86.74 Aligned_cols=84 Identities=8% Similarity=0.151 Sum_probs=64.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-Chh-------------------------hHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-DPR-------------------------YARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~~-------------------------l~~~~~i 154 (346)
.+++++|.||++||++|+.+.|.+.++++.+...++.++.+ + ... +++.|+|
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 45789999999999999999999999999986545666654 3 334 8999999
Q ss_pred CCcceEEEE-ecCC-cceecCCcchhHHHHHHHhh
Q psy160 155 TKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 155 ~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
.++|+++++ ++|+ ...+.|... .+++++.+.+
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~-~~~~l~~l~~ 143 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYEN-LDDFLVQYEK 143 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGG-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHH-HHHHHHHHHH
Confidence 999999999 4676 344566544 3356655543
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=83.65 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=63.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCcEEEEe--C--------------------------ChhhHHhhC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKM--A--------------------------DPRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~--~--------------------------~~~l~~~~~ 153 (346)
.+++++|.||++||++|+.+.|.+.++++.+ ...++.++.+ + ...++++|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 5688999999999999999999999999998 6656666655 3 237899999
Q ss_pred CCCcceEEEE-ecCCcceecCCcchhHHHHHHHhhc
Q psy160 154 VTKLPAVVYF-RHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 154 i~~~Ptl~~~-~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|.++|+++++ ++|+.. +... + .+.+.+++.+.
T Consensus 112 v~~~P~~~lid~~G~i~-~~~~-~-~~~l~~~l~~l 144 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKIL-ARDI-Q-GEALTGKLKEL 144 (148)
T ss_dssp CCSSSEEEEECTTSBEE-EESC-C-HHHHHHHHHHH
T ss_pred CCCcCEEEEECCCCeEE-EecC-C-HHHHHHHHHHH
Confidence 9999999999 456532 2222 3 33677776654
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-09 Score=84.13 Aligned_cols=89 Identities=12% Similarity=0.272 Sum_probs=68.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------------------ChhhHHhhCCCCcceE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----------------------DPRYARKWGVTKLPAV 160 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------------------~~~l~~~~~i~~~Ptl 160 (346)
.+++++|.||++||++|+...|.+.++++.+...++.++.++ ...+++.|+|.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 457899999999999999999999999999965566666543 3579999999999998
Q ss_pred EEE-ecCC-cceecCCcc-hhHHHHHHHhhcccc
Q psy160 161 VYF-RHRF-PSIYRGDLS-EEEEVLQWLITQKTE 191 (346)
Q Consensus 161 ~~~-~~g~-~~~y~g~~~-~~~~i~~fi~~~~~~ 191 (346)
+++ ++|+ ...+.|... ...++++.+.+...+
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~ 153 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH 153 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred EEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence 887 4576 445777543 234788877776544
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=77.83 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=53.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCccccEEEEEeCCeEEEeecCccccccchhhhh
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKGTYIGTY 291 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~~~~~~~~~~ 291 (346)
++.|+++||++|+.+.|.+++++..+ ..-+.+ ++++++++|+++ +|++++ .+|+.+. |..+.+. +..+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~--g~~~~~~---L~~~ 71 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD--WPFDAPR---LRAW 71 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE--SCCCHHH---HHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe--CCCCHHH---HHHH
Confidence 67899999999999999999987653 222333 678999999998 999999 8898763 6654322 5555
Q ss_pred hhc
Q psy160 292 IST 294 (346)
Q Consensus 292 i~~ 294 (346)
++.
T Consensus 72 l~~ 74 (87)
T 1ttz_A 72 LDA 74 (87)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-09 Score=85.81 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=61.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------C-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------A-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------~-~~~l~~~~~i~~~P 158 (346)
++++++|.||++||++|+.+.|.+.++++. +..+..+.+ + ...++++|+|.++|
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 127 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 127 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence 568899999999999999999999999876 333333332 2 45789999999999
Q ss_pred eEEEE-ecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYF-RHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~-~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.+++ ++|+. ..+.|..+.+ .+.+++.+.
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~~ 158 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPR-VWEEEIKPL 158 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHH-HHHHTTHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHH-HHHHHHHHH
Confidence 65555 56773 4577877644 777776654
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.1e-09 Score=85.05 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=65.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-------------------C----------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-------------------D---------------- 145 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-------------------~---------------- 145 (346)
.+++++|.|+++||++|+...|.+.++++.+. ++.++.+ + .
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW 113 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTS
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCe
Confidence 45889999999999999999999999999987 4666554 3 1
Q ss_pred ------hhhHHhhCCCCcceEEEEe-cCCcceecCCc-chhHHHHHHHhhc
Q psy160 146 ------PRYARKWGVTKLPAVVYFR-HRFPSIYRGDL-SEEEEVLQWLITQ 188 (346)
Q Consensus 146 ------~~l~~~~~i~~~Ptl~~~~-~g~~~~y~g~~-~~~~~i~~fi~~~ 188 (346)
..+++.|+|.++|+++++. +|+... .|.. + .+.+.+.+.+.
T Consensus 114 ~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~-~~~l~~~l~~l 162 (165)
T 3ha9_A 114 IMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPS-LGELESVIKSV 162 (165)
T ss_dssp EEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCC-HHHHHHHHHHC
T ss_pred eEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCC-HHHHHHHHHHH
Confidence 2789999999999999995 565444 7777 5 44788877654
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-09 Score=84.90 Aligned_cols=69 Identities=17% Similarity=0.380 Sum_probs=57.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE---cC------------------------hhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI---QD------------------------PQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i---~~------------------------~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++++++++ .++.++.+ .. ..+++.|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 357999999999999999999999999999974 36777766 22 578999999
Q ss_pred ccccEEEEEe-C-CeEEEe
Q psy160 260 KTFPALVYFR-N-GNPLIF 276 (346)
Q Consensus 260 ~~~Pti~~~~-~-g~~~~y 276 (346)
.++|+++++. + |+.+..
T Consensus 127 ~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CCCCEEEEEeCCCCEEEec
Confidence 9999999997 3 765543
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.7e-09 Score=82.35 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE--cC-------------------------hhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--QD-------------------------PQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~-------------------------~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++++++.+ .++.++.+ +. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 457999999999999999999999999999873 36777776 21 468899999
Q ss_pred ccccEEEEEe--CCeEEEee
Q psy160 260 KTFPALVYFR--NGNPLIFE 277 (346)
Q Consensus 260 ~~~Pti~~~~--~g~~~~y~ 277 (346)
.++|+++++. +|+.+...
T Consensus 107 ~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCcEEecc
Confidence 9999999996 78765433
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-09 Score=82.88 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=65.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cCh----------------------hhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP----------------------QLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~----------------------~~~~~~~i~~~ 262 (346)
.+++++|.||++||++|+.+.+.+.++++++.+.++.++.+ .+. .+++.|++.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 45799999999999999999999999999998645777777 222 67788999999
Q ss_pred cEEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 263 PALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 263 Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
|+++++ ++|+.+ .+.|....+... +..+++.
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~-l~~~i~~ 139 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEA-LEQQILA 139 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHH-HHHHHHH
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHH-HHHHHHH
Confidence 999888 678754 466755432222 5555544
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=77.58 Aligned_cols=103 Identities=9% Similarity=0.097 Sum_probs=83.8
Q ss_pred hccCCccccCceeec-CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCC
Q psy160 78 TSQDVFEIKNEIEEV-NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTK 156 (346)
Q Consensus 78 ~~~~~p~~~~~v~~l-~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~ 156 (346)
.++..| +..+..| +.+++++++..+++++|-|+++||+.| .+.|.++|+.+ .++.|+.++++++++++++.
T Consensus 14 ~kq~gP--~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~--~d~~F~~t~~~~v~~~~~v~- 85 (124)
T 2l4c_A 14 SDGPGA--AQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF--PGVSFGISTDSEVLTHYNIT- 85 (124)
T ss_dssp CCCSCC--SCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC--TTSEEEEECCHHHHHHTTCC-
T ss_pred HhccCC--CCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC--CCceEEEEChHHHHHHcCCC-
Confidence 345565 3344556 578899999988999999999999998 67899999998 34999999999999999998
Q ss_pred cceEEEEecCC--cceecC----CcchhHHHHHHHhhcc
Q psy160 157 LPAVVYFRHRF--PSIYRG----DLSEEEEVLQWLITQK 189 (346)
Q Consensus 157 ~Ptl~~~~~g~--~~~y~g----~~~~~~~i~~fi~~~~ 189 (346)
.|++++|++.. ...|.| ..+ .++|.+||..+.
T Consensus 86 ~~~vvlfkkfde~~~~~~g~~~~~~~-~~~L~~FI~~n~ 123 (124)
T 2l4c_A 86 GNTICLFRLVDNEQLNLEDEDIESID-ATKLSRFIEINS 123 (124)
T ss_dssp SSCEEEEETTTTEEEEECHHHHTTCC-HHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCceeecCcccCCCC-HHHHHHHHHHhc
Confidence 89999999854 567887 565 458999998753
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.5e-09 Score=82.90 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=65.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--C------------------------hhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--D------------------------PRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~------------------------~~l~~~~~i~~ 156 (346)
.+++++|.||++||++|+...|.+.++++.+.+.++.++.++ . ..+++.|+|.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 457899999999999999999999999999966556666543 2 23889999999
Q ss_pred cceEEEE-ecCC-cceecCCcc-hhHHHHHHHhhccc
Q psy160 157 LPAVVYF-RHRF-PSIYRGDLS-EEEEVLQWLITQKT 190 (346)
Q Consensus 157 ~Ptl~~~-~~g~-~~~y~g~~~-~~~~i~~fi~~~~~ 190 (346)
+|+++++ ++|+ ...+.|... ..+++.+++.+...
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS 143 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence 9977777 4676 344667641 23478888877543
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=84.35 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=57.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhc-CcCceEEEEE---c-------------------------ChhhhhhCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDEC-DIYGIHMVKI---Q-------------------------DPQLAKRYS 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~-~~~~i~~~~i---~-------------------------~~~~~~~~~ 258 (346)
.+++++|.||++||++|+.+.|.+.++++++ .+.++.++.+ . +..+++.|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 4579999999999999999999999999999 6545888877 2 347899999
Q ss_pred CccccEEEEE-eCCeEE
Q psy160 259 IKTFPALVYF-RNGNPL 274 (346)
Q Consensus 259 i~~~Pti~~~-~~g~~~ 274 (346)
+.++|+++++ ++|+.+
T Consensus 112 v~~~P~~~lid~~G~i~ 128 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKIL 128 (148)
T ss_dssp CCSSSEEEEECTTSBEE
T ss_pred CCCcCEEEEECCCCeEE
Confidence 9999999999 677644
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-09 Score=82.28 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=54.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CC--------------------------hhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--AD--------------------------PRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~--------------------------~~l~~~~~i 154 (346)
.+++++|.||++||++|+...|.+.++++.+.+.++.++.+ +. ..+++.|+|
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 45789999999999999999999999999986655666554 32 578899999
Q ss_pred CCcceEEEE-ecCCc
Q psy160 155 TKLPAVVYF-RHRFP 168 (346)
Q Consensus 155 ~~~Ptl~~~-~~g~~ 168 (346)
.++|+++++ ++|+.
T Consensus 108 ~~~P~~~lid~~G~i 122 (152)
T 2lrn_A 108 VGFPHIILVDPEGKI 122 (152)
T ss_dssp CSSCEEEEECTTSEE
T ss_pred CcCCeEEEECCCCeE
Confidence 999999999 46763
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.8e-09 Score=84.11 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=59.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC---------------------------
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY--------------------------- 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~--------------------------- 257 (346)
.+++++|.||++||++|+.+.|.+.++++++.+.++.++.+ ...+..+.|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 45799999999999999999999999999998655888887 335555555
Q ss_pred CCccccEEEEE-eCCeEE-EeecCcc
Q psy160 258 SIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 258 ~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
++.++|+++++ ++|+.+ .+.|..+
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~ 138 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRS 138 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCC
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCC
Confidence 89999999988 678754 4667664
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-09 Score=81.98 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=57.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE--cC-------------------------hhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--QD-------------------------PQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~~-------------------------~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++++++.+ .++.++.+ +. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 357999999999999999999999999999872 36777776 21 368899999
Q ss_pred ccccEEEEEe--CCeEEEe
Q psy160 260 KTFPALVYFR--NGNPLIF 276 (346)
Q Consensus 260 ~~~Pti~~~~--~g~~~~y 276 (346)
.++|+++++. +|+.+..
T Consensus 107 ~~~Pt~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVVTT 125 (146)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CCCCEEEEEECCCCeEEEe
Confidence 9999999997 7876543
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=83.60 Aligned_cols=81 Identities=14% Similarity=0.323 Sum_probs=60.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHH---HHhhccCCCcEEEEeC--Ch-------------------------hhHHhhC
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEK---IDGETDNMDITFVKMA--DP-------------------------RYARKWG 153 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~---~a~~~~~~~i~~~~~~--~~-------------------------~l~~~~~ 153 (346)
+++++|.||++||++|+...|.+.+ +++.++..++.++.++ .. .+++.|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 5789999999999999999999999 8988865566666543 11 1578999
Q ss_pred CCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 154 VTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 154 i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
|.++|+++++.....+.+.+. . .+++.+|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~~-~-~~~l~~~l~ 141 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDA-T-LQKVEQYLA 141 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEE-C-HHHHHHHHH
T ss_pred CCcCCeEEEECCCCcEEecCC-C-HHHHHHHHh
Confidence 999999999964333333332 2 337777775
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.7e-09 Score=80.31 Aligned_cols=73 Identities=15% Similarity=0.403 Sum_probs=59.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhhh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKR 256 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~ 256 (346)
.+++++|.||++||++|+.+.+.+.++++++.. ++.++.+ .+..+++.
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 99 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET 99 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence 457999999999999999999999999998664 6666665 13468899
Q ss_pred CCCccccEEEEE-eCCeEE-EeecCcc
Q psy160 257 YSIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|++.++|+++++ ++|+.+ .+.|..+
T Consensus 100 ~~v~~~P~~~lid~~G~i~~~~~g~~~ 126 (138)
T 4evm_A 100 YGVRSYPTQAFIDKEGKLVKTHPGFME 126 (138)
T ss_dssp TTCCSSSEEEEECTTCCEEEEEESCCC
T ss_pred cCcccCCeEEEECCCCcEEEeecCCCc
Confidence 999999999999 678753 5677655
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-09 Score=82.89 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=61.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------ChhhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------DPRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------~~~l~~~~~i~~ 156 (346)
.+++++|.||++||++|+.+.|.+.++++. .+ +.++.++ ...++++|+|.+
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~--v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 117 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG 117 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CC--eEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc
Confidence 367899999999999999999999999876 22 4444322 347889999999
Q ss_pred cceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 157 LPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 157 ~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+++++ ++|+ ...+.|..+.+ .+.+++.+.
T Consensus 118 ~P~~~~id~~G~i~~~~~g~~~~~-~l~~~l~~~ 150 (156)
T 1kng_A 118 VPETFVVGREGTIVYKLVGPITPD-NLRSVLLPQ 150 (156)
T ss_dssp SCEEEEECTTSBEEEEEESCCCHH-HHHHTHHHH
T ss_pred cCeEEEEcCCCCEEEEEeCCCCHH-HHHHHHHHH
Confidence 9977666 5677 34578877644 777776653
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.2e-09 Score=83.10 Aligned_cols=73 Identities=12% Similarity=0.244 Sum_probs=59.3
Q ss_pred cceEEEEEEcCCChhhHHH-HHHHHHHHhhcCcCceEEEEEcC-------------------------------h-----
Q psy160 209 TQYLAVYFYKLNCNICDQI-LEGLEKVDDECDIYGIHMVKIQD-------------------------------P----- 251 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~-~~~~~~la~~~~~~~i~~~~i~~-------------------------------~----- 251 (346)
.++++|.||++||++|+.. .|.+.++.+++++.++.++.+.- .
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 5799999999999999995 99999999999855677776621 1
Q ss_pred hhhhhCCCccccEEEEE-eCCeEE-EeecCcc
Q psy160 252 QLAKRYSIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 252 ~~~~~~~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
.+++.|++.++|+++++ ++|+.+ .+.|..+
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~ 139 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVS 139 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCC
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 48899999999999998 578743 4667665
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-09 Score=83.15 Aligned_cols=74 Identities=14% Similarity=0.358 Sum_probs=60.5
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.+.+.++++++.+.++.++.+ .+..+++.|+|.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 46799999999999999999999999999987645666643 2557899999999
Q ss_pred ccEEEEE-eCCeE-EEeecCcc
Q psy160 262 FPALVYF-RNGNP-LIFEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~-~~y~g~~~ 281 (346)
+|+++++ ++|+. ..|.|..+
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~ 128 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPD 128 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCC
T ss_pred cCeEEEECCCCcEEEEEcCCCC
Confidence 9999999 67774 35777654
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-09 Score=82.46 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=57.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc-CceEEEEE--c-------------------------ChhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDI-YGIHMVKI--Q-------------------------DPQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~-~~i~~~~i--~-------------------------~~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++++++++ .++.++.+ + +..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 457999999999999999999999999999872 36777766 2 1357889999
Q ss_pred ccccEEEEEe--CCeEEEeec
Q psy160 260 KTFPALVYFR--NGNPLIFEG 278 (346)
Q Consensus 260 ~~~Pti~~~~--~g~~~~y~g 278 (346)
.++|+++++. +|+.+...+
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 107 ESIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEECCCCeEEecch
Confidence 9999999998 787655443
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-09 Score=83.05 Aligned_cols=67 Identities=9% Similarity=0.161 Sum_probs=54.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEE--EeCC-------------------------hhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFV--KMAD-------------------------PRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~--~~~~-------------------------~~l~~~~~i 154 (346)
.+++++|.||++||++|+.+.|.+.++++++.. .++.++ .+|. ..++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 457899999999999999999999999999862 345544 4442 368899999
Q ss_pred CCcceEEEEe--cCCcc
Q psy160 155 TKLPAVVYFR--HRFPS 169 (346)
Q Consensus 155 ~~~Ptl~~~~--~g~~~ 169 (346)
.++||++++. +|+..
T Consensus 107 ~~~Pt~~lid~~~G~i~ 123 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVV 123 (146)
T ss_dssp CSSSEEEEEETTTCCEE
T ss_pred CCCCEEEEEECCCCeEE
Confidence 9999999997 56643
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=81.73 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=57.8
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--------------------------ChhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------------------------DPQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------------------------~~~~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++.+++.+.++.++.+ + +..+++.|+|
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 45799999999999999999999999999998645888877 2 3678899999
Q ss_pred ccccEEEEE-eCCeEEE
Q psy160 260 KTFPALVYF-RNGNPLI 275 (346)
Q Consensus 260 ~~~Pti~~~-~~g~~~~ 275 (346)
.++|+++++ ++|+.+.
T Consensus 108 ~~~P~~~lid~~G~i~~ 124 (152)
T 2lrn_A 108 VGFPHIILVDPEGKIVA 124 (152)
T ss_dssp CSSCEEEEECTTSEEEE
T ss_pred CcCCeEEEECCCCeEEE
Confidence 999999999 6787543
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=82.14 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=59.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-Ch-----------------------hhHHhhCCCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-DP-----------------------RYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~~-----------------------~l~~~~~i~~ 156 (346)
.+++++|.||++||++|+...|.+.++++++.+.++.++.+ | .. .+++.|+|.+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 113 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN 113 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence 45789999999999999999999999999986545666554 3 22 2889999999
Q ss_pred cceEEEEe-cCC-cceecCCcchh
Q psy160 157 LPAVVYFR-HRF-PSIYRGDLSEE 178 (346)
Q Consensus 157 ~Ptl~~~~-~g~-~~~y~g~~~~~ 178 (346)
+|+++++. +|+ ...+.|....+
T Consensus 114 ~P~~~lid~~G~i~~~~~g~~~~e 137 (152)
T 2lrt_A 114 LPSVFLVNRNNELSARGENIKDLD 137 (152)
T ss_dssp CSEEEEEETTTEEEEETTTCSCHH
T ss_pred CceEEEECCCCeEEEecCCHHHHH
Confidence 99999995 676 34467766544
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-09 Score=81.97 Aligned_cols=83 Identities=17% Similarity=0.365 Sum_probs=60.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHH---HHhhccCCCcEEEEe--C-Chh----------------------h--HHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEK---IDGETDNMDITFVKM--A-DPR----------------------Y--ARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~---~a~~~~~~~i~~~~~--~-~~~----------------------l--~~~~ 152 (346)
.+++++|.||++||++|+...|.+.+ +++.+...++.++.+ | ... + ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 46889999999999999999999988 888875545666654 3 222 2 3489
Q ss_pred CCCCcceEEEEe-cCCcceecCCcchhHHHHHHHhhc
Q psy160 153 GVTKLPAVVYFR-HRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.++|+++++. +|+ +.+ +..+ .+++.+++.+.
T Consensus 106 ~v~~~P~~~lid~~G~-i~~-~~~~-~~~l~~~l~~~ 139 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKR-VIL-KDTS-MEQLIDYLATQ 139 (142)
T ss_dssp CCCSSSEEEEECTTCB-EEE-CSCC-HHHHHHHHHC-
T ss_pred CCCCCCeEEEECCCCC-EEe-cCCC-HHHHHHHHHHH
Confidence 999999999995 454 334 4445 44788888764
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=82.33 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=54.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEE--eCC-------------------------hhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVK--MAD-------------------------PRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~--~~~-------------------------~~l~~~~~i 154 (346)
.+++++|.|+++||++|+.+.|.+.++++++. ..++.++. +|. ..++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 45789999999999999999999999999886 23455544 442 358899999
Q ss_pred CCcceEEEEe--cCCcce
Q psy160 155 TKLPAVVYFR--HRFPSI 170 (346)
Q Consensus 155 ~~~Ptl~~~~--~g~~~~ 170 (346)
.++||++++. +|+...
T Consensus 107 ~~~Pt~~lid~~~G~i~~ 124 (144)
T 1o73_A 107 ESIPTLITINADTGAIIG 124 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCeEEe
Confidence 9999999998 566443
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=82.45 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=54.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEE--eCC-------------------------hhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVK--MAD-------------------------PRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~--~~~-------------------------~~l~~~~~i 154 (346)
.+++++|.||++||++|+.+.|.+.++++.+.. .++.++. +|. ..++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 457899999999999999999999999999863 3455554 442 468899999
Q ss_pred CCcceEEEEe--cCCcc
Q psy160 155 TKLPAVVYFR--HRFPS 169 (346)
Q Consensus 155 ~~~Ptl~~~~--~g~~~ 169 (346)
.++|+++++. +|+..
T Consensus 107 ~~~P~~~lid~~~G~i~ 123 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNII 123 (144)
T ss_dssp CSSSEEEEEETTTCCEE
T ss_pred CCCCEEEEEECCCCcEE
Confidence 9999999996 56643
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-09 Score=79.57 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C-----hhhHHhhCCCCcceEEEEecC
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D-----PRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~-----~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+.+++++.. +.+++ ||++||++|+.+.|.+.+++.. +.++.++ . ..+++++++.++||+ |.+|
T Consensus 11 ~~~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g 81 (116)
T 2e7p_A 11 KKAKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGG 81 (116)
T ss_dssp HHHHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 445555544 45555 9999999999999999998654 4667765 2 358999999999999 4577
Q ss_pred Ccc-eecCCc---chhHHHHHHHhhc
Q psy160 167 FPS-IYRGDL---SEEEEVLQWLITQ 188 (346)
Q Consensus 167 ~~~-~y~g~~---~~~~~i~~fi~~~ 188 (346)
+.+ .+.|.. . .+.|.+++.+.
T Consensus 82 ~~v~~~~~~~~~~~-~~~l~~~l~~~ 106 (116)
T 2e7p_A 82 KQIGGCDTVVEKHQ-RNELLPLLQDA 106 (116)
T ss_dssp EEEECHHHHHHHHH-TTCHHHHHHHT
T ss_pred EEECChHHHHHHHh-CChHHHHHHHc
Confidence 632 344432 3 22577777653
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=82.01 Aligned_cols=74 Identities=14% Similarity=0.295 Sum_probs=59.6
Q ss_pred ccceEEEEEEcCCChhhHH-HHHHHHHHHhhcCcCceEEEEEc-------------------------------Chh---
Q psy160 208 ETQYLAVYFYKLNCNICDQ-ILEGLEKVDDECDIYGIHMVKIQ-------------------------------DPQ--- 252 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~-~~~~~~~la~~~~~~~i~~~~i~-------------------------------~~~--- 252 (346)
.+++++|.||++||++|.. +.|.+.++.+++.+.++.++.+. ...
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 3679999999999999999 69999999999986557777662 122
Q ss_pred ---hhhhCCCccccEEEEEe-CCeEE-EeecCcc
Q psy160 253 ---LAKRYSIKTFPALVYFR-NGNPL-IFEGENK 281 (346)
Q Consensus 253 ---~~~~~~i~~~Pti~~~~-~g~~~-~y~g~~~ 281 (346)
+++.|+|.++|+++++. +|+.+ .+.|..+
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~ 142 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVD 142 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCC
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCC
Confidence 88999999999999995 77743 4567765
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-09 Score=82.88 Aligned_cols=74 Identities=16% Similarity=0.385 Sum_probs=60.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cCh-----------------------hhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP-----------------------QLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~-----------------------~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.+.+.++.+++.+.++.++.+ .+. .+++.|++.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 35789999999999999999999999999987656888877 222 6889999999
Q ss_pred ccEEEEEe-CCeEEE-eecCcc
Q psy160 262 FPALVYFR-NGNPLI-FEGENK 281 (346)
Q Consensus 262 ~Pti~~~~-~g~~~~-y~g~~~ 281 (346)
+|+++++. +|+.+. +.|..+
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~ 130 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPS 130 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTT
T ss_pred CCEEEEECCCCeEEEccCCCCC
Confidence 99999997 787544 445443
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-09 Score=83.80 Aligned_cols=66 Identities=9% Similarity=0.165 Sum_probs=54.3
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEE--eC-C------------------------hhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVK--MA-D------------------------PRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~--~~-~------------------------~~l~~~~~i 154 (346)
.+++++|.||++||++|+.+.|.+.++++++.. .++.++. +| . ..+++.|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 468899999999999999999999999999854 3455554 33 2 578999999
Q ss_pred CCcceEEEEec--CCc
Q psy160 155 TKLPAVVYFRH--RFP 168 (346)
Q Consensus 155 ~~~Ptl~~~~~--g~~ 168 (346)
.++|+++++.. |+.
T Consensus 127 ~~~Pt~~lid~~~G~i 142 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDT 142 (165)
T ss_dssp CSSSEEEEEETTTCCE
T ss_pred CCCCEEEEEeCCCCEE
Confidence 99999999983 553
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=77.91 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=79.5
Q ss_pred hccccCcE-EEc-cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccE
Q psy160 187 TQKTEDRI-ELI-TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPA 264 (346)
Q Consensus 187 ~~~~~~~v-~~l-~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pt 264 (346)
++..|+.. ..+ +.++++++++++++++|.|+++||++| .+.|.++|+.+ . ++.|+.+.+++++++++++ .|+
T Consensus 15 kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~-d~~F~~t~~~~v~~~~~v~-~~~ 88 (124)
T 2l4c_A 15 DGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-P-GVSFGISTDSEVLTHYNIT-GNT 88 (124)
T ss_dssp CCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T-TSEEEEECCHHHHHHTTCC-SSC
T ss_pred hccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-C-CceEEEEChHHHHHHcCCC-CCe
Confidence 44455432 234 678899999989999999999999988 68999999998 4 7999999999999999998 799
Q ss_pred EEEEeCC--eEEEeec----Cccccccchhhhhhhcc
Q psy160 265 LVYFRNG--NPLIFEG----ENKILKGTYIGTYISTK 295 (346)
Q Consensus 265 i~~~~~g--~~~~y~g----~~~~~~~~~~~~~i~~~ 295 (346)
+++|+++ +...|.| ..+.+. |..|++.+
T Consensus 89 vvlfkkfde~~~~~~g~~~~~~~~~~---L~~FI~~n 122 (124)
T 2l4c_A 89 ICLFRLVDNEQLNLEDEDIESIDATK---LSRFIEIN 122 (124)
T ss_dssp EEEEETTTTEEEEECHHHHTTCCHHH---HHHHHHHH
T ss_pred EEEEEcCCCCceeecCcccCCCCHHH---HHHHHHHh
Confidence 9999975 4678887 444222 77777754
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-09 Score=81.08 Aligned_cols=67 Identities=15% Similarity=0.406 Sum_probs=53.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHH---HHhhcCcCceEEEEE---cChhh------------------------hhhC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI---QDPQL------------------------AKRY 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i---~~~~~------------------------~~~~ 257 (346)
.+++++|.||++||++|+.+.|.+.+ +.+.+++.++.++.+ .+.+. ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 35799999999999999999999998 888886546888777 22222 3489
Q ss_pred CCccccEEEEE-eCCeEE
Q psy160 258 SIKTFPALVYF-RNGNPL 274 (346)
Q Consensus 258 ~i~~~Pti~~~-~~g~~~ 274 (346)
+|.++|+++++ ++|+.+
T Consensus 106 ~v~~~P~~~lid~~G~i~ 123 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKRVI 123 (142)
T ss_dssp CCCSSSEEEEECTTCBEE
T ss_pred CCCCCCeEEEECCCCCEE
Confidence 99999999999 467653
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=79.91 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=64.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC------------------------hhhhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD------------------------PQLAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~------------------------~~~~~~~~i~~ 261 (346)
.+++++|.||++||++|+.+.+.+.++.+++.+.++.++.+ +. ..+++.|++.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 45799999999999999999999999999998656888777 21 23788999999
Q ss_pred ccEEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 262 FPALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 262 ~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
+|+++++ ++|+.+ .+.|....+... +..+++.
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~-l~~~l~~ 140 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPE-VIAFLNN 140 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHH-HHHHHHT
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHH-HHHHHHH
Confidence 9977776 678754 466765322222 4444444
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=81.66 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=61.3
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----------------------------cChhhhhhCCCcc
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------QDPQLAKRYSIKT 261 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------~~~~~~~~~~i~~ 261 (346)
++++|.||++||++|+.+.|.+.++++++ +..+..+.+ ....+++.|++.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 78999999999999999999999999998 434444444 3366789999999
Q ss_pred ccEEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 262 FPALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 262 ~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
+|+++++ ++|+.+ .+.|..+.++ +..+++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~---l~~~l~~ 141 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREA---LLDALLL 141 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHH---HHHHHHH
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHH---HHHHHHh
Confidence 9998888 688754 4667655322 4444443
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.3e-09 Score=73.90 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=50.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCCcceecCCcc
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLS 176 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~ 176 (346)
+++|+++||++|+.+.|.++++++.+. ..+.+++++ ...+++++|+.++||+++ +|+.. +.|...
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~-~~G~~~ 72 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSK-YTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF-HINFGA 72 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTT-EEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE-EEEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcC-CeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE-EeccCc
Confidence 688999999999999999999887642 236677775 467889999999999987 66532 355443
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=81.75 Aligned_cols=70 Identities=16% Similarity=0.411 Sum_probs=58.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-------------------C----------------
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-------------------D---------------- 250 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-------------------~---------------- 250 (346)
..++++|.||++||++|+.+.|.+.++.+++. ++.++.+ + .
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW 113 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTS
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCe
Confidence 45799999999999999999999999999987 6777777 3 1
Q ss_pred ------hhhhhhCCCccccEEEEE-eCCeEEEeecCc
Q psy160 251 ------PQLAKRYSIKTFPALVYF-RNGNPLIFEGEN 280 (346)
Q Consensus 251 ------~~~~~~~~i~~~Pti~~~-~~g~~~~y~g~~ 280 (346)
..+++.|+|.++|+++++ ++|+.+. .|..
T Consensus 114 ~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~ 149 (165)
T 3ha9_A 114 IMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTT 149 (165)
T ss_dssp EEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEES
T ss_pred eEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCC
Confidence 278899999999999999 5777655 6655
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=82.85 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=63.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCc------EEEEe--CC--hhhHHhh--------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDI------TFVKM--AD--PRYARKW-------------------- 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i------~~~~~--~~--~~l~~~~-------------------- 152 (346)
.+++++|.||++||++|+...|.+.++++.+...++ .++.+ +. ...+++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 457899999999999999999999999999855445 66654 33 5555555
Q ss_pred -----CCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 153 -----GVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 153 -----~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++.++|+++++ ++|+ ...+.|..+ .++|.+++.+.
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~-~~~l~~~l~~l 179 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVT-SKDVLDVALPL 179 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCC-HHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCC-HHHHHHHHHHH
Confidence 68999977666 4677 345788776 44788887654
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=92.41 Aligned_cols=85 Identities=7% Similarity=0.017 Sum_probs=67.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------------ChhhHHhh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------------------------------DPRYARKW 152 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------------~~~l~~~~ 152 (346)
.+++++|.||++||++|+.+.|.+.++++++...++.++.++ ...+++.|
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 357899999999999999999999999999865456666552 25789999
Q ss_pred CCCCcceEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 153 GVTKLPAVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 153 ~i~~~Ptl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|.++|+++++ ++|+ ...+.|..+.+ ++.+++.+.
T Consensus 161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~-~l~~~I~~l 197 (352)
T 2hyx_A 161 RNRYWPAEYLIDATGTVRHIKFGEGDYN-VTETLVRQL 197 (352)
T ss_dssp TCCEESEEEEECTTSBEEEEEESBCCHH-HHHHHHHHH
T ss_pred CCCccCEEEEEeCCCeEEEEEcCCCCHH-HHHHHHHHH
Confidence 99999999998 5676 44577877644 777777653
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=79.70 Aligned_cols=65 Identities=17% Similarity=0.480 Sum_probs=53.4
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHH---HHhhcCcCceEEEEE---cChh------------------------hhhhCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI---QDPQ------------------------LAKRYS 258 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i---~~~~------------------------~~~~~~ 258 (346)
.++++|.||++||++|+.+.|.+.+ +.+++++.++.++.+ ...+ +++.|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 4799999999999999999999999 999886557888877 2211 477899
Q ss_pred CccccEEEEEe-CCeE
Q psy160 259 IKTFPALVYFR-NGNP 273 (346)
Q Consensus 259 i~~~Pti~~~~-~g~~ 273 (346)
|.++|+++++. +|+.
T Consensus 111 v~~~P~~~lid~~G~i 126 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTV 126 (142)
T ss_dssp CTTCSEEEEECTTCBE
T ss_pred CCcCCeEEEECCCCcE
Confidence 99999999995 5654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-08 Score=79.62 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=59.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChh-----------------------hhhhCCCcc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQ-----------------------LAKRYSIKT 261 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~-----------------------~~~~~~i~~ 261 (346)
.+++++|.||++||++|....|.+.++.+++.+.++.++.+ ...+ +++.|++.+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 113 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN 113 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence 35799999999999999999999999999997645888877 2222 788999999
Q ss_pred ccEEEEE-eCCeEEE-eecCcc
Q psy160 262 FPALVYF-RNGNPLI-FEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~~~-y~g~~~ 281 (346)
+|+++++ ++|+.+. +.|..+
T Consensus 114 ~P~~~lid~~G~i~~~~~g~~~ 135 (152)
T 2lrt_A 114 LPSVFLVNRNNELSARGENIKD 135 (152)
T ss_dssp CSEEEEEETTTEEEEETTTCSC
T ss_pred CceEEEECCCCeEEEecCCHHH
Confidence 9999999 5787543 455543
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.9e-09 Score=81.39 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=59.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChh-------------------------hhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQ-------------------------LAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~-------------------------~~~~~~i 259 (346)
.+++++|.||++||++|+.+.|.+.++.+++.+.++.++.+ .+.+ +++.|++
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 45799999999999999999999999999998645888887 2444 8999999
Q ss_pred ccccEEEEE-eCCeEE-EeecC
Q psy160 260 KTFPALVYF-RNGNPL-IFEGE 279 (346)
Q Consensus 260 ~~~Pti~~~-~~g~~~-~y~g~ 279 (346)
.++|+++++ ++|+.+ .+.|.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~ 131 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGY 131 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCG
T ss_pred CCCCEEEEECCCCcEEEecCCH
Confidence 999999999 677753 34444
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-08 Score=81.21 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=61.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------C-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------A-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------~-~~~l~~~~~i~~~P 158 (346)
.+++++|.||++||++|+...|.+.+++++ +..+..+.+ | ...+++.|+|.++|
T Consensus 57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 134 (176)
T 3kh7_A 57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP 134 (176)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence 468899999999999999999999999876 322222232 1 45788999999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhhc
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+++++. +|+ ...+.|..+.+ .+.+++.+.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~-~l~~~l~~~ 165 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQK-VWREQLAPL 165 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHH-HHHHHTHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHH-HHHHHHHHH
Confidence 888774 576 34577887644 677776654
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=71.86 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=50.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc----ChhhhhhCCCccccEEEEEeCCeEEEeecCc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ----DPQLAKRYSIKTFPALVYFRNGNPLIFEGEN 280 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~----~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~ 280 (346)
++.|+++||++|+.+.+.++++++++.. .+.+..++ +.++++++|++++|++++ +|+.+ +.|..
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~-~~G~~ 71 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSKY-TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF-HINFG 71 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTTE-EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE-EEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcCC-eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE-EeccC
Confidence 5779999999999999999999877653 56677773 567889999999999977 77743 45543
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-08 Score=76.94 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=59.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-C--------------------------hhhHHhhC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-D--------------------------PRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-~--------------------------~~l~~~~~ 153 (346)
.+++++|.||++||++|+...|.+.++++++...++.++.+ | . ..+++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 45789999999999999999999999999986556666644 2 1 35778999
Q ss_pred CCCcceEEEEe-cCCcceecCCcchhHHHHHHHh
Q psy160 154 VTKLPAVVYFR-HRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 154 i~~~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
|.++|+.+++. +|+. .+.+. . .+++.+.+.
T Consensus 111 v~~~P~~~lid~~G~i-~~~~~-~-~~~l~~~l~ 141 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVI-IAANV-T-PEKLTEILK 141 (143)
T ss_dssp GGGCCCEEEECTTSBE-EEESC-C-HHHHHHHHT
T ss_pred CCCCCcEEEECCCCEE-EEccC-C-HHHHHHHHH
Confidence 99999999887 4553 33322 2 235666554
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-08 Score=76.74 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=55.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C--------------------------hhhhhhCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D--------------------------PQLAKRYS 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~--------------------------~~~~~~~~ 258 (346)
.+++++|.||++||++|..+.|.+.++.+++++.++.++.+ + + ..+++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 35799999999999999999999999999997656877776 1 1 24678899
Q ss_pred CccccEEEEEe-CCeEE
Q psy160 259 IKTFPALVYFR-NGNPL 274 (346)
Q Consensus 259 i~~~Pti~~~~-~g~~~ 274 (346)
|.++|+.+++. +|+.+
T Consensus 111 v~~~P~~~lid~~G~i~ 127 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVII 127 (143)
T ss_dssp GGGCCCEEEECTTSBEE
T ss_pred CCCCCcEEEECCCCEEE
Confidence 99999998886 67643
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=75.78 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=61.3
Q ss_pred cCCcEEEEEECCCChh--HHHHHHHHHHHHhhc-cCCCcEEEEe--C-C-------------------------hhhHHh
Q psy160 103 ENEFVTVFFYETDHKD--SVKVLERLEKIDGET-DNMDITFVKM--A-D-------------------------PRYARK 151 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~--c~~~~~~~~~~a~~~-~~~~i~~~~~--~-~-------------------------~~l~~~ 151 (346)
.+++++|.||++||++ |+...|.+.++++++ +..++.++.+ | . ..+++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4578999999999999 999999999999998 6555666654 3 2 268899
Q ss_pred hCCCCcceEEEEe-cCCcceecCCcchhHHHHHHHhh
Q psy160 152 WGVTKLPAVVYFR-HRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 152 ~~i~~~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
|+|.++|+++++. +|+... ... + .+++.+.+.+
T Consensus 112 ~~v~~~P~~~lid~~G~i~~-~~~-~-~~~l~~~l~~ 145 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKILA-KNL-R-GEELKKKIEN 145 (150)
T ss_dssp TTCCSSSEEEEECTTSBEEE-ESC-C-HHHHHHHHHH
T ss_pred cCCCccCeEEEECCCCEEEE-ccC-C-HHHHHHHHHH
Confidence 9999999999994 566322 222 2 3356665544
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.4e-08 Score=76.80 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=56.7
Q ss_pred ccceEEEEEEcCCChh--hHHHHHHHHHHHhhc-CcCceEEEEE---cC-------------------------hhhhhh
Q psy160 208 ETQYLAVYFYKLNCNI--CDQILEGLEKVDDEC-DIYGIHMVKI---QD-------------------------PQLAKR 256 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~--c~~~~~~~~~la~~~-~~~~i~~~~i---~~-------------------------~~~~~~ 256 (346)
.+++++|.||++||++ |+...|.+.++.+++ ++.++.++.+ .. ..+++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 3579999999999999 999999999999999 6545888877 22 268899
Q ss_pred CCCccccEEEEE-eCCeEE
Q psy160 257 YSIKTFPALVYF-RNGNPL 274 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~ 274 (346)
|++.++|+++++ ++|+.+
T Consensus 112 ~~v~~~P~~~lid~~G~i~ 130 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKIL 130 (150)
T ss_dssp TTCCSSSEEEEECTTSBEE
T ss_pred cCCCccCeEEEECCCCEEE
Confidence 999999999999 677754
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=77.80 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=54.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~~ 262 (346)
+++++|.||++||++|+.+.|.+.+++++ + ++.++.+ .+..+++.|++.++
T Consensus 42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 118 (156)
T 1kng_A 42 GKVSLVNVWASWCVPCHDEAPLLTELGKD--K-RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV 118 (156)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTC--T-TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred CCEEEEEEEcccCHhHHHHHHHHHHHHhc--C-CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence 67899999999999999999999999877 2 4555544 23467889999999
Q ss_pred cEEEEE-eCCeEE-EeecCcc
Q psy160 263 PALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|+++++ ++|+.+ .+.|..+
T Consensus 119 P~~~~id~~G~i~~~~~g~~~ 139 (156)
T 1kng_A 119 PETFVVGREGTIVYKLVGPIT 139 (156)
T ss_dssp CEEEEECTTSBEEEEEESCCC
T ss_pred CeEEEEcCCCCEEEEEeCCCC
Confidence 977666 688754 4667654
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-07 Score=78.96 Aligned_cols=87 Identities=14% Similarity=0.229 Sum_probs=64.4
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe--CC------hhhHHhhCCC-------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM--AD------PRYARKWGVT------------------- 155 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~~------~~l~~~~~i~------------------- 155 (346)
.+++++|.||++||++|+...|.+.++++++...++.++.+ |. ..+++++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 45789999999999999999999999999986445555544 32 3466677774
Q ss_pred ----CcceEEEE-ecCC-cceecCCcc-hhHHHHHHHhhcc
Q psy160 156 ----KLPAVVYF-RHRF-PSIYRGDLS-EEEEVLQWLITQK 189 (346)
Q Consensus 156 ----~~Ptl~~~-~~g~-~~~y~g~~~-~~~~i~~fi~~~~ 189 (346)
++|+++++ ++|+ ...+.|... ..+++.+++....
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll 179 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 179 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHh
Confidence 89999999 4676 345777654 1347888877654
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-09 Score=84.63 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=55.5
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE--c-C-------------------------hhhhhhCCC
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI--Q-D-------------------------PQLAKRYSI 259 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i--~-~-------------------------~~~~~~~~i 259 (346)
++++|.||++||++|+.+.|.+.+++++++. .++.++.+ + . ..+++.|+|
T Consensus 27 ~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (143)
T 2lus_A 27 DIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI 106 (143)
Confidence 3899999999999999999999999998831 24555555 1 2 368889999
Q ss_pred ccccEEEEEe-CCeEEEeecCc
Q psy160 260 KTFPALVYFR-NGNPLIFEGEN 280 (346)
Q Consensus 260 ~~~Pti~~~~-~g~~~~y~g~~ 280 (346)
.++|+++++. +|+.+...|..
T Consensus 107 ~~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 107 TGIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 9999999997 78765555443
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.4e-08 Score=80.09 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=63.1
Q ss_pred cCC-cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------ChhhH
Q psy160 103 ENE-FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYA 149 (346)
Q Consensus 103 ~~~-~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~l~ 149 (346)
.++ +++|.|+++||++|+...|.+.++++++...++.++.++ ...++
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA 123 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence 345 599999999999999999999999998854445555432 34689
Q ss_pred HhhCCCCcceEEEEe-cCCcc-e---------ecCCcchhHHHHHHHhhcc
Q psy160 150 RKWGVTKLPAVVYFR-HRFPS-I---------YRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 150 ~~~~i~~~Ptl~~~~-~g~~~-~---------y~g~~~~~~~i~~fi~~~~ 189 (346)
+.|+|.++|+++++. +|+.. . +.|..+.+ +|.+.+.+..
T Consensus 124 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~-~l~~~i~~ll 173 (196)
T 2ywi_A 124 KAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGE-SIRAALDALL 173 (196)
T ss_dssp HHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCH-HHHHHHHHHH
T ss_pred HHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHH-HHHHHHHHHH
Confidence 999999999999995 56532 2 23554533 6777776543
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-09 Score=84.48 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=54.1
Q ss_pred CC-cEEEEEECCCChhHHHHHHHHHHHHhhcc--CCCcEEE--EeC-C-------------------------hhhHHhh
Q psy160 104 NE-FVTVFFYETDHKDSVKVLERLEKIDGETD--NMDITFV--KMA-D-------------------------PRYARKW 152 (346)
Q Consensus 104 ~~-~~lv~F~~~~C~~c~~~~~~~~~~a~~~~--~~~i~~~--~~~-~-------------------------~~l~~~~ 152 (346)
++ +++|.|+++||++|+.+.|.+.++++.++ ..++.++ .++ . ..++++|
T Consensus 25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (143)
T 2lus_A 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY 104 (143)
Confidence 45 89999999999999999999999998882 1233333 333 1 3688999
Q ss_pred CCCCcceEEEEe-cCCcceecCC
Q psy160 153 GVTKLPAVVYFR-HRFPSIYRGD 174 (346)
Q Consensus 153 ~i~~~Ptl~~~~-~g~~~~y~g~ 174 (346)
+|.++|+++++. +|+.....|.
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 105 GITGIPALVIVKKDGTLISMNGR 127 (143)
Confidence 999999999997 6765444443
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-08 Score=78.36 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=54.2
Q ss_pred hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEE-----------------------E-cChhhhhhCCCccc
Q psy160 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVK-----------------------I-QDPQLAKRYSIKTF 262 (346)
Q Consensus 207 ~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~-----------------------i-~~~~~~~~~~i~~~ 262 (346)
..+++++|.||++||++|+.+.|.+.+++++ +..+..+. . .+..+++.|+|.++
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 126 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 126 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence 3567999999999999999999999999876 22333333 1 34568889999999
Q ss_pred cEEEEE-eCCeEE-EeecCcc
Q psy160 263 PALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|+.+++ ++|+.+ .+.|..+
T Consensus 127 P~~~lid~~G~i~~~~~g~~~ 147 (168)
T 2b1k_A 127 PETFLIDGNGIIRYRHAGDLN 147 (168)
T ss_dssp SEEEEECTTSBEEEEEESCCC
T ss_pred CEEEEECCCCeEEEEEeCCCC
Confidence 965555 678754 4667654
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.4e-08 Score=73.29 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=48.3
Q ss_pred HHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC-------hhhhhhCCCccccEEEEEeCCe
Q psy160 201 MLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD-------PQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~-------~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
.++++++. +++++ ||++||++|+.+.|.+.+++.. +.++.+ .+ ..+++.+++.++|++ |.+|+
T Consensus 12 ~~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~ 82 (116)
T 2e7p_A 12 KAKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGK 82 (116)
T ss_dssp HHHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTE
T ss_pred HHHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 34445544 35555 9999999999999999998654 345666 22 358899999999999 56887
Q ss_pred EE
Q psy160 273 PL 274 (346)
Q Consensus 273 ~~ 274 (346)
.+
T Consensus 83 ~v 84 (116)
T 2e7p_A 83 QI 84 (116)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-08 Score=79.64 Aligned_cols=74 Identities=18% Similarity=0.367 Sum_probs=56.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCce------EEEEE---c-ChhhhhhC--------------------
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGI------HMVKI---Q-DPQLAKRY-------------------- 257 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i------~~~~i---~-~~~~~~~~-------------------- 257 (346)
..++++|.||++||++|+.+.|.+.++.+++.+.++ .++.+ . .++..++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 357999999999999999999999999999875446 88887 2 35555554
Q ss_pred -----CCccccEEEEE-eCCeEE-EeecCcc
Q psy160 258 -----SIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 258 -----~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
++.++|+++++ ++|+.+ .+.|..+
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~ 168 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVT 168 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCC
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCC
Confidence 68899977666 678754 4667654
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.7e-08 Score=87.22 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=60.1
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc------------------------------ChhhhhhCC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ------------------------------DPQLAKRYS 258 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~------------------------------~~~~~~~~~ 258 (346)
.++++|.||++||++|+.+.|.+.++++++++.++.++.|. +..+++.|+
T Consensus 82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg 161 (352)
T 2hyx_A 82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR 161 (352)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence 57999999999999999999999999999976457777762 246889999
Q ss_pred CccccEEEEE-eCCeEE-EeecCcc
Q psy160 259 IKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 259 i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|.++|+++++ ++|+.+ .+.|..+
T Consensus 162 V~~~Pt~~lID~~G~Iv~~~~G~~~ 186 (352)
T 2hyx_A 162 NRYWPAEYLIDATGTVRHIKFGEGD 186 (352)
T ss_dssp CCEESEEEEECTTSBEEEEEESBCC
T ss_pred CCccCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999888 678754 4667654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=74.86 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEec--CC
Q psy160 98 DKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFRH--RF 167 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~~--g~ 167 (346)
...-+.+++++|.||++||..|+.|.... .++++.++. ++.++++| ...+.++|++.++|+++++.. |+
T Consensus 36 ~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~ 114 (153)
T 2dlx_A 36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQ 114 (153)
T ss_dssp HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCC
T ss_pred HHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 33335578999999999999999997543 334443322 35666654 346889999999999999964 54
Q ss_pred c-ceecCCcchhHHHHHHHhhc
Q psy160 168 P-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 168 ~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
. ..+.| .+ .+++++++.+.
T Consensus 115 ~l~~~~g-~~-~~~fl~~L~~~ 134 (153)
T 2dlx_A 115 KLVEWHQ-LD-VSSFLDQVTGF 134 (153)
T ss_dssp CCEEESS-CC-HHHHHHHHHHH
T ss_pred EeeecCC-CC-HHHHHHHHHHH
Confidence 3 33555 55 44777777653
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.6e-08 Score=79.88 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=61.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------ChhhHH
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~l~~ 150 (346)
.+++++|.|+++||++|+...|.+.++++++... +.++.++ ...+++
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 110 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAK 110 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 4578999999999999999999999999998654 5555442 346889
Q ss_pred hhCCCCcceEEEEe-cCCcceecCCcc---------hhHHHHHHHhhc
Q psy160 151 KWGVTKLPAVVYFR-HRFPSIYRGDLS---------EEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~-~g~~~~y~g~~~---------~~~~i~~fi~~~ 188 (346)
.|+|.++|+++++. +|+. .+.|... ..++|.+.+.+.
T Consensus 111 ~~~v~~~P~~~lid~~G~i-~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 111 AYRALRTPEVFLFDERRLL-RYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp HTTCCEESEEEEECTTCBE-EEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred HcCCCCCCeEEEECCCCcE-EEEEecCCccccccccCHHHHHHHHHHH
Confidence 99999999999994 4653 3334431 123666666654
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.9e-08 Score=80.27 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=58.0
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC--------------------------------ChHHHHhcCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS--------------------------------DTEAAAKYNIIN 48 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~~c~~~~i~~ 48 (346)
|.||++||++|+...|.+.++++.+...++.++.++ +.+++..|+|.+
T Consensus 51 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 130 (196)
T 2ywi_A 51 IMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAAC 130 (196)
T ss_dssp EEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCC
Confidence 579999999999999999999999866677665542 246889999999
Q ss_pred CCeEEEEe-CCceee----------ecCCCCCHHHHHHHHhc
Q psy160 49 LPSLVYFR-KQVPLL----------YDGDLFDEEKILTWLTS 79 (346)
Q Consensus 49 ~Ptl~~f~-~~~~~~----------y~G~~~~~~~i~~~i~~ 79 (346)
+|+++++. +|.... +.|..+. +++.+.|.+
T Consensus 131 ~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~-~~l~~~i~~ 171 (196)
T 2ywi_A 131 TPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTG-ESIRAALDA 171 (196)
T ss_dssp ESEEEEEETTCBEEEEECSSSCCTTTCCCCCC-HHHHHHHHH
T ss_pred CCeEEEEcCCCeEEEccccCcccccccCccCH-HHHHHHHHH
Confidence 99999986 555432 2354444 366655543
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=69.84 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+.+.+++|+++||++|+.+.+.+++++.. ..+..++++ .+.++.+|| .+.|++ +.+|+... .|..+ .+.
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~~---i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~~-~~g~~-~~~ 86 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFLM-MHRVN-TSK 86 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSS---SEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEEE-ESSCC-HHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhhC---CeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEEE-ecCCC-HHH
Confidence 35689999999999999999999877643 223334444 567899999 999986 45777542 34455 347
Q ss_pred HHHHHhhcc
Q psy160 181 VLQWLITQK 189 (346)
Q Consensus 181 i~~fi~~~~ 189 (346)
|.+++....
T Consensus 87 l~~~l~~~~ 95 (100)
T 1wjk_A 87 LEKQLRKLS 95 (100)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=80.65 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=56.2
Q ss_pred CC-cEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------ChhhHH
Q psy160 104 NE-FVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------DPRYAR 150 (346)
Q Consensus 104 ~~-~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------~~~l~~ 150 (346)
++ +++|.|+++||++|+..+|.+.++++++...++.++.++ ...+++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 137 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK 137 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence 45 499999999999999999999999999966556655442 347899
Q ss_pred hhCCCCcceEEEEe-cCCcceecCC
Q psy160 151 KWGVTKLPAVVYFR-HRFPSIYRGD 174 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~-~g~~~~y~g~ 174 (346)
.|+|...|+++++. +|+ +.|.|.
T Consensus 138 ~~~v~~~P~~~liD~~G~-i~~~g~ 161 (218)
T 3u5r_E 138 AYGAACTPDFFLYDRERR-LVYHGQ 161 (218)
T ss_dssp HHTCCEESEEEEECTTCB-EEEEEC
T ss_pred HcCCCCCCeEEEECCCCc-EEEecc
Confidence 99999999999995 454 456654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=75.66 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEeC--CeE
Q psy160 205 MVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFRN--GNP 273 (346)
Q Consensus 205 ~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~~--g~~ 273 (346)
..+++++++|.|+++||..|+.|.... .++++.++. ++.+..+ +...+.++|++.++|+++++.. |+.
T Consensus 38 Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~ 115 (153)
T 2dlx_A 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQK 115 (153)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCC
T ss_pred HHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcE
Confidence 345689999999999999999996554 345555543 5667776 2345789999999999999964 543
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-07 Score=75.03 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=58.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-C-----hhhhhhCCCc-------------------
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-D-----PQLAKRYSIK------------------- 260 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-~-----~~~~~~~~i~------------------- 260 (346)
.+++++|.||++||++|..+.+.+.++.+++.+.++.++.+ + . ..+.+++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 35789999999999999999999999999987546888777 2 2 3456777764
Q ss_pred ----cccEEEEE-eCCeEE-EeecCcc
Q psy160 261 ----TFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 261 ----~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
++|+++++ ++|+.+ .+.|...
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~ 165 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAE 165 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCC
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCc
Confidence 89999998 678753 4677653
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=68.04 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=52.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C----hhhHHhhC--CCCcceEEEEecCCcceecCCcchh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D----PRYARKWG--VTKLPAVVYFRHRFPSIYRGDLSEE 178 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~----~~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~~~~ 178 (346)
++.|+++||++|+++.+.+++++....+ +.+..+| + ..+++++| +.++|++ |.+|+.+ |..
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i---~~~--- 72 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI---GGY--- 72 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE---ESS---
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCC--ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEE---ECH---
Confidence 6789999999999999999999876543 6666655 1 37899999 9999998 3466532 222
Q ss_pred HHHHHHHhhc
Q psy160 179 EEVLQWLITQ 188 (346)
Q Consensus 179 ~~i~~fi~~~ 188 (346)
++|.+++.+.
T Consensus 73 ~~l~~~~~~~ 82 (85)
T 1ego_A 73 TDFAAWVKEN 82 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 2677777653
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=75.79 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=56.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc--------------------------------Chhhhhh
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ--------------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~--------------------------------~~~~~~~ 256 (346)
.++++|.||++||++|+...|.+.++.+++.+. +.++.+. +..+++.
T Consensus 33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 579999999999999999999999999999864 7777762 2357889
Q ss_pred CCCccccEEEEE-eCCeEEEeecC
Q psy160 257 YSIKTFPALVYF-RNGNPLIFEGE 279 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~~y~g~ 279 (346)
|++.++|+++++ ++|+.+ +.|.
T Consensus 112 ~~v~~~P~~~lid~~G~i~-~~g~ 134 (188)
T 2cvb_A 112 YRALRTPEVFLFDERRLLR-YHGR 134 (188)
T ss_dssp TTCCEESEEEEECTTCBEE-EEEC
T ss_pred cCCCCCCeEEEECCCCcEE-EEEe
Confidence 999999999999 567643 4454
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=79.14 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=58.1
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c------------------------------ChhhhhhC
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q------------------------------DPQLAKRY 257 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~------------------------------~~~~~~~~ 257 (346)
.+++|.||++||++|....|.+.++.+++++.++.++.| + +..+++.|
T Consensus 60 ~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 139 (218)
T 3u5r_E 60 PALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAY 139 (218)
T ss_dssp SEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHH
T ss_pred CeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHc
Confidence 359999999999999999999999999998656888877 2 24688999
Q ss_pred CCccccEEEEE-eCCeEEEeecCc
Q psy160 258 SIKTFPALVYF-RNGNPLIFEGEN 280 (346)
Q Consensus 258 ~i~~~Pti~~~-~~g~~~~y~g~~ 280 (346)
++.++|+++++ ++|+. .|.|..
T Consensus 140 ~v~~~P~~~liD~~G~i-~~~g~~ 162 (218)
T 3u5r_E 140 GAACTPDFFLYDRERRL-VYHGQF 162 (218)
T ss_dssp TCCEESEEEEECTTCBE-EEEECS
T ss_pred CCCCCCeEEEECCCCcE-EEeccc
Confidence 99999999999 56664 576643
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=75.40 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=53.3
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------cChhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------~~~~~~~~~~i~~~ 262 (346)
+++++|.||++||++|+.+.|.+.++.++ + +.++.+ .+..+++.|++.++
T Consensus 58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~--v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 133 (176)
T 3kh7_A 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--G--VVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA 133 (176)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHT--T--CEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHC--C--CEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence 57899999999999999999999999877 2 333333 24567888999999
Q ss_pred cEEEEE-eCCeEE-EeecCcc
Q psy160 263 PALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 263 Pti~~~-~~g~~~-~y~g~~~ 281 (346)
|+++++ ++|+.+ .+.|..+
T Consensus 134 P~~~lid~~G~i~~~~~g~~~ 154 (176)
T 3kh7_A 134 PETYLIDKQGIIRHKIVGVVD 154 (176)
T ss_dssp CEEEEECTTCBEEEEEESCCC
T ss_pred CeEEEECCCCeEEEEEcCCCC
Confidence 988777 577743 4667654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-08 Score=81.28 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=60.7
Q ss_pred hhhHHhhCCCCcceEEEEecCCcceecCCcch---------hHHHHHHHhhccccCcE-EEccHHHHHHHH--hccceEE
Q psy160 146 PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSE---------EEEVLQWLITQKTEDRI-ELITRVMLETMV--EETQYLA 213 (346)
Q Consensus 146 ~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~---------~~~i~~fi~~~~~~~~v-~~l~~~~~~~~~--~~~~~~l 213 (346)
...++.+||++.|++++ +|+...-.+.... ..+++.++.+...|..- ....+.++..+. ...++++
T Consensus 40 ~~~a~~~gi~gvP~fvi--ngk~~~~~~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~~~g~~y~~l~~p~~~~~~v 117 (197)
T 1un2_A 40 EKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQV 117 (197)
T ss_dssp HHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCCTTCCSE
T ss_pred HHHHHHcCCCcCCEEEE--cceEecCccccccccHHHHHHHHHHHHHHHHhCcccccccccCCCCCceEccCCCCCCCEE
Confidence 45688999999999976 5552211111111 11244555443322111 112233343332 1356899
Q ss_pred EEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE
Q psy160 214 VYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI 248 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i 248 (346)
|.||+.||+||+.+.|.+ +++++.+.+ ++.|.++
T Consensus 118 veFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~ 154 (197)
T 1un2_A 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKY 154 (197)
T ss_dssp EEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEE
T ss_pred EEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEe
Confidence 999999999999999999 999999875 7777777
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.48 E-value=7.4e-08 Score=80.80 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=59.4
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCC--H-------HHHHHHHhccCCccccCceeecCHHHHHHHH--hcCC
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFD--E-------EKILTWLTSQDVFEIKNEIEEVNRRMLDKLL--EENE 105 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~--~-------~~i~~~i~~~~~p~~~~~v~~l~~~~~~~~~--~~~~ 105 (346)
+......+||++.|++++ +|....-.++... . .+++.++.+...|...... ..-+++..+. ...+
T Consensus 39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~--~~g~~y~~l~~p~~~~ 114 (197)
T 1un2_A 39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQY--EDGKQYTTLEKPVAGA 114 (197)
T ss_dssp HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------C--CBTTTEEECSSCCTTC
T ss_pred HHHHHHHcCCCcCCEEEE--cceEecCccccccccHHHHHHHHHHHHHHHHhCccccccccc--CCCCCceEccCCCCCC
Confidence 346778999999999876 5553321122222 1 1356666665554211110 1112222221 1246
Q ss_pred cEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC
Q psy160 106 FVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA 144 (346)
Q Consensus 106 ~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~ 144 (346)
+++|.||++||+||+++.|.| +++++.+.+ ++.|..++
T Consensus 115 ~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~ 155 (197)
T 1un2_A 115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYH 155 (197)
T ss_dssp CSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEE
T ss_pred CEEEEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEec
Confidence 789999999999999999999 999988743 35555543
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.9e-07 Score=72.13 Aligned_cols=85 Identities=14% Similarity=0.275 Sum_probs=62.1
Q ss_pred cCCc-EEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCCC
Q psy160 103 ENEF-VTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVTK 156 (346)
Q Consensus 103 ~~~~-~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~~ 156 (346)
.++. ++|.|| ++||++|....|.+.+++++++..++.++.+ | ...+++.|++.+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG 106 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence 3455 899999 9999999999999999999996555555543 2 457899999999
Q ss_pred ----cceEEEEe-cCC-cceecCCcchh---HHHHHHHhh
Q psy160 157 ----LPAVVYFR-HRF-PSIYRGDLSEE---EEVLQWLIT 187 (346)
Q Consensus 157 ----~Ptl~~~~-~g~-~~~y~g~~~~~---~~i~~fi~~ 187 (346)
+|+.+++. +|+ ...+.|..... +++++.+++
T Consensus 107 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~ 146 (161)
T 3drn_A 107 FILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ 146 (161)
T ss_dssp SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred cCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 99999885 576 34566733222 245555443
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-07 Score=64.87 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=46.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC----hhhhhhCC--CccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD----PQLAKRYS--IKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~----~~~~~~~~--i~~~Pti~~~~~g~~~ 274 (346)
++.|+++||++|+.+.+.+++++..+. ++.+..+ .+ .++.++++ +.++|++ |.+|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i 69 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI 69 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEE
Confidence 577999999999999999999998765 4666666 22 47888999 9999998 4578754
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-07 Score=73.61 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=62.5
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhccC----CCcEEEE--eCC-----------------------------h
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDN----MDITFVK--MAD-----------------------------P 146 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~----~~i~~~~--~~~-----------------------------~ 146 (346)
.+++++|.|+++||++ |....|.+.++++.+.. .++.++. +|. .
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA 104 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3578999999999998 99999999999998842 3455544 431 1
Q ss_pred hhHHhhCCCCcc---------------eEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 147 RYARKWGVTKLP---------------AVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 147 ~l~~~~~i~~~P---------------tl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.+++.|+|...| +++++ ++|+ ...|.|..+. +++.+.+...
T Consensus 105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~-~~l~~~l~~l 162 (171)
T 2rli_A 105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSA-EQISDSVRRH 162 (171)
T ss_dssp HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCH-HHHHHHHHHH
T ss_pred HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCH-HHHHHHHHHH
Confidence 578899999888 66666 5677 3447777764 3777777653
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-07 Score=74.41 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhccCC---CcEEEEe--CC-----------------------------hh
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDNM---DITFVKM--AD-----------------------------PR 147 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~~---~i~~~~~--~~-----------------------------~~ 147 (346)
.+++++|.|+++||++ |+...|.+.++++++... ++.++.+ |. ..
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 4578999999999997 999999999999998532 4555544 31 35
Q ss_pred hHHhhCC---------------CCcceEEEEecCC-cceecCCc--chhHHHHHHHhh
Q psy160 148 YARKWGV---------------TKLPAVVYFRHRF-PSIYRGDL--SEEEEVLQWLIT 187 (346)
Q Consensus 148 l~~~~~i---------------~~~Ptl~~~~~g~-~~~y~g~~--~~~~~i~~fi~~ 187 (346)
+++.|++ ...|+++++.+|+ ...+.|.. + .+++.+.+++
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~-~~~l~~~l~~ 170 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEA-TDRVVADLQA 170 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTC-HHHHHHHHHH
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCC-HHHHHHHHHH
Confidence 6667765 5779999998665 33466665 4 3478777764
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-08 Score=80.30 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=49.4
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHH-HHhhcC-cCceEEEEE---cChhhhhh----------------------CC--
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEK-VDDECD-IYGIHMVKI---QDPQLAKR----------------------YS-- 258 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~-la~~~~-~~~i~~~~i---~~~~~~~~----------------------~~-- 258 (346)
.+++++|.||++||++|+.+.|.+.+ +...+. +.++.++.+ ..++..++ |+
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 45789999999999999999999998 887776 335666666 22222333 33
Q ss_pred CccccEEEEE-eCCeEEE
Q psy160 259 IKTFPALVYF-RNGNPLI 275 (346)
Q Consensus 259 i~~~Pti~~~-~~g~~~~ 275 (346)
+.++|+++++ ++|+.+.
T Consensus 112 ~~~~P~~~lid~~G~i~~ 129 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVK 129 (159)
Confidence 5679999988 6787543
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-07 Score=72.45 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=59.0
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C------------------------ChhhHHhhCCC--
Q psy160 105 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A------------------------DPRYARKWGVT-- 155 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~------------------------~~~l~~~~~i~-- 155 (346)
++++|.|| ++||++|....|.+.++++++...++.++.+ | ...+++.|++.
T Consensus 37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~ 116 (160)
T 1xvw_A 37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE 116 (160)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence 38999998 9999999999999999999986545555543 2 45688999998
Q ss_pred --Ccc--eEEEE-ecCC-cceecCCcch---hHHHHHHHh
Q psy160 156 --KLP--AVVYF-RHRF-PSIYRGDLSE---EEEVLQWLI 186 (346)
Q Consensus 156 --~~P--tl~~~-~~g~-~~~y~g~~~~---~~~i~~fi~ 186 (346)
++| +.+++ ++|+ ...+.|.... .+++++.+.
T Consensus 117 ~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 117 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALA 156 (160)
T ss_dssp TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred cCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 999 56655 5676 3345665432 235555554
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=77.68 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=56.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE-----------------------------------------
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK----------------------------------------- 142 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~----------------------------------------- 142 (346)
++++++.|+++||++|+++.|.+.++++. +..+.+..
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~ 163 (216)
T 1eej_A 86 EKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC 163 (216)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHH
Confidence 36789999999999999999999988753 11111111
Q ss_pred ---eC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 143 ---MA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 143 ---~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++ +..+++++||+++||+ ++.+|. .+.|..+.+ .|.+++...
T Consensus 164 ~~~v~~~~~l~~~~gV~gtPt~-v~~dG~--~~~G~~~~~-~l~~~l~~~ 209 (216)
T 1eej_A 164 DVDIADHYALGVQLGVSGTPAV-VLSNGT--LVPGYQPPK-EMKEFLDEH 209 (216)
T ss_dssp SCCHHHHHHHHHHHTCCSSSEE-ECTTSC--EEESCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCEE-EEcCCe--EecCCCCHH-HHHHHHHHh
Confidence 11 3468889999999999 555664 567876644 788877653
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.3e-07 Score=72.69 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhccC----CCcEEEE--eCC-----------------------------h
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETDN----MDITFVK--MAD-----------------------------P 146 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~~----~~i~~~~--~~~-----------------------------~ 146 (346)
.+++++|.|+++||++ |....|.+.++.+++.. .++.++. +|. .
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~ 101 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 101 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 4578999999999998 99999999999998843 2455544 432 1
Q ss_pred hhHHhhCCCCcc---------------eEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 147 RYARKWGVTKLP---------------AVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 147 ~l~~~~~i~~~P---------------tl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.+++.|+|...| +++++ ++|+ ...|.|..+. +++.+.+.+.
T Consensus 102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~-~~l~~~l~~l 159 (164)
T 2ggt_A 102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRK-GEIAASIATH 159 (164)
T ss_dssp HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCH-HHHHHHHHHH
T ss_pred HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCH-HHHHHHHHHH
Confidence 378899999999 56555 4677 3446777663 4777776653
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.5e-08 Score=79.50 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=54.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHH-HHhhcc-CCCcEEEEeC---Chh----------------------hHHhhC--
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEK-IDGETD-NMDITFVKMA---DPR----------------------YARKWG-- 153 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~-~a~~~~-~~~i~~~~~~---~~~----------------------l~~~~~-- 153 (346)
.+++++|.||++||++|+...|.+.+ +...+. ..++.++.++ ... +++.|+
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 45789999999999999999999998 877775 4445555443 112 233444
Q ss_pred CCCcceEEEE-ecCCcc-eecCCcchhHHHHHHHhh
Q psy160 154 VTKLPAVVYF-RHRFPS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 154 i~~~Ptl~~~-~~g~~~-~y~g~~~~~~~i~~fi~~ 187 (346)
+.++|+++++ ++|+.. .+.| .+.. ++.+++..
T Consensus 112 ~~~~P~~~lid~~G~i~~~~~g-~~~~-~l~~~l~~ 145 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVKLTRL-YNEE-EFASLVQQ 145 (159)
Confidence 5679999988 567633 3444 2322 45554443
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-07 Score=67.56 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=52.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c---ChhhhhhCCCccccEEEEEeCCeEEEeecCcccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q---DPQLAKRYSIKTFPALVYFRNGNPLIFEGENKIL 283 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~---~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~~ 283 (346)
+.+.++.|+++||++|+.+.+.+++++.. +.+..+ + +++++++|+ .++|++ +.+|+.+ ..+..+.+
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~~-----i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~ 85 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR-----FILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTS 85 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSS-----SEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhhC-----CeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHH
Confidence 45678899999999999999999887643 445544 3 577899999 999976 5688765 34444322
Q ss_pred ccchhhhhhh
Q psy160 284 KGTYIGTYIS 293 (346)
Q Consensus 284 ~~~~~~~~i~ 293 (346)
.+..+++
T Consensus 86 ---~l~~~l~ 92 (100)
T 1wjk_A 86 ---KLEKQLR 92 (100)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHH
Confidence 2555554
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-07 Score=76.35 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe----------------------------------------
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM---------------------------------------- 143 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---------------------------------------- 143 (346)
.+..++.|+++||++|+++.|.++++.+. +..+.+...
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~ 163 (211)
T 1t3b_A 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT 163 (211)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHH
Confidence 35789999999999999999999987652 111211111
Q ss_pred C-----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 144 A-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 144 ~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+ +..+++++||++.||+++ .+|+ .+.|..+.+ .|.+++.+.
T Consensus 164 ~~~v~~~~~l~~~~gV~gTPt~vi-~nG~--~~~G~~~~~-~l~~~l~~~ 209 (211)
T 1t3b_A 164 PNIVKKHYELGIQFGVRGTPSIVT-STGE--LIGGYLKPA-DLLRALEET 209 (211)
T ss_dssp SSHHHHHHHHHHHHTCCSSCEEEC-TTSC--CCCSCCCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcCCEEEE-eCCE--EecCCCCHH-HHHHHHHhc
Confidence 1 345778999999999998 6776 566876644 788887654
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=71.96 Aligned_cols=80 Identities=11% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---------------------------------------
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--------------------------------------- 144 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--------------------------------------- 144 (346)
.++.++.|+++||++|.++.|.+.++.+...+..+.+..+.
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~ 101 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANET 101 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHH
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHH
Confidence 35789999999999999999999999887644333333321
Q ss_pred -------------------------------ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 145 -------------------------------DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 145 -------------------------------~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+..+++++||.++||+++ +|+ .+.|..+.+ .+.+.+.+.
T Consensus 102 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~--~~~G~~~~~-~l~~~i~~~ 171 (175)
T 3gyk_A 102 GVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA--LVPGFVEQS-QLQDAVDRA 171 (175)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE--EECSCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE--EeeCCCCHH-HHHHHHHHH
Confidence 234678999999999987 564 567877644 777777653
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=69.10 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=56.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c------------------------ChhhhhhCCCc-
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q------------------------DPQLAKRYSIK- 260 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~------------------------~~~~~~~~~i~- 260 (346)
+++++|.|| ++||++|....|.+.++.+++++.++.++.+ + +..+++.|++.
T Consensus 36 k~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~ 115 (160)
T 1xvw_A 36 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN 115 (160)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence 348999998 9999999999999999999997546777776 1 45688899998
Q ss_pred ---ccc--EEEEE-eCCeEE-EeecCc
Q psy160 261 ---TFP--ALVYF-RNGNPL-IFEGEN 280 (346)
Q Consensus 261 ---~~P--ti~~~-~~g~~~-~y~g~~ 280 (346)
++| +++++ ++|+.+ .+.|..
T Consensus 116 ~~~~~p~~~~~lid~~G~i~~~~~g~~ 142 (160)
T 1xvw_A 116 EQAGIANRGTFVVDRSGIIRFAEMKQP 142 (160)
T ss_dssp TTTTEECSEEEEECTTSBEEEEEECCT
T ss_pred ccCCCeeeeEEEECCCCeEEEEEecCC
Confidence 999 66555 678753 355654
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.9e-07 Score=74.45 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=62.6
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE--eC--------------------------ChhhHHhhC
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK--MA--------------------------DPRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~--------------------------~~~l~~~~~ 153 (346)
.+++++|.|| ++||++|...+|.+.++++++...++.++. +| ...+++.|+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence 4578999999 999999999999999999988543444443 33 345788999
Q ss_pred CC------CcceEEEE-ecCC-cceecCCcc---hhHHHHHHHhhc
Q psy160 154 VT------KLPAVVYF-RHRF-PSIYRGDLS---EEEEVLQWLITQ 188 (346)
Q Consensus 154 i~------~~Ptl~~~-~~g~-~~~y~g~~~---~~~~i~~fi~~~ 188 (346)
+. ..|+++++ ++|+ ...+.|... ..+++++.++..
T Consensus 110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 98 89999999 4676 334555431 233677776653
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=69.84 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=56.7
Q ss_pred ceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c----------------------ChhhhhhCCCcc---
Q psy160 210 QYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q----------------------DPQLAKRYSIKT--- 261 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~----------------------~~~~~~~~~i~~--- 261 (346)
.+++|.|| ++||++|....|.+.++.+++++.++.++.+ + +..+++.|++.+
T Consensus 30 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~ 109 (161)
T 3drn_A 30 HNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFIL 109 (161)
T ss_dssp SEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSS
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCc
Confidence 34899999 9999999999999999999997646777776 2 356888999999
Q ss_pred -ccEEEEE-eCCeEE-EeecC
Q psy160 262 -FPALVYF-RNGNPL-IFEGE 279 (346)
Q Consensus 262 -~Pti~~~-~~g~~~-~y~g~ 279 (346)
+|+.+++ ++|+.+ .+.|.
T Consensus 110 ~~P~~~lid~~G~i~~~~~g~ 130 (161)
T 3drn_A 110 PARITFVIDKKGIIRHIYNSQ 130 (161)
T ss_dssp CCCEEEEECTTSBEEEEEECS
T ss_pred ccceEEEECCCCEEEEEEecC
Confidence 9999888 578743 46663
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=70.24 Aligned_cols=41 Identities=0% Similarity=0.074 Sum_probs=35.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|...+|.+.++++++.+.++.++.+
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAF 71 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEE
Confidence 46889999999999999999999999999986545666654
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=71.78 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=57.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------C----hhhH-------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----------D----PRYA------------------- 149 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~----~~l~------------------- 149 (346)
.+++++|.|+++||++|+ .+|.+.++++++.+.++.++.++ . .+.+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 109 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG 109 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence 468899999999999999 99999999999865455555441 0 1112
Q ss_pred -----------HhhCCCCcc------eEEEE-ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 150 -----------RKWGVTKLP------AVVYF-RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 150 -----------~~~~i~~~P------tl~~~-~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+.|++.++| +.+++ ++|+ ...+.|..+.+ .+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~-~l~~~i~~l 166 (171)
T 3cmi_A 110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPS-SLSETIEEL 166 (171)
T ss_dssp TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGG-GGHHHHHHH
T ss_pred cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHH-HHHHHHHHH
Confidence 246888999 66666 5677 34567766543 666666543
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=71.76 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=34.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|...+|.+.++++++.+.++.++.+
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v 87 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF 87 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45789999999999999999999999999986545655544
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=73.13 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=64.0
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C--------------------------ChhhHHhhC
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A--------------------------DPRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~--------------------------~~~l~~~~~ 153 (346)
.+++++|.|| ++||++|....|.+.++++++...++.++.+ | ...+++.|+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 123 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 123 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence 3578999999 9999999999999999999885444554433 2 345788999
Q ss_pred CC-----CcceEEEEe-cCC-cceecCCcc---hhHHHHHHHhhcc
Q psy160 154 VT-----KLPAVVYFR-HRF-PSIYRGDLS---EEEEVLQWLITQK 189 (346)
Q Consensus 154 i~-----~~Ptl~~~~-~g~-~~~y~g~~~---~~~~i~~fi~~~~ 189 (346)
+. ..|+++++. +|+ ...+.|... ..+++++.++...
T Consensus 124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 169 (195)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 99 999999995 576 333555431 2347777777654
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.6e-06 Score=68.08 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|...+|.+.++++++.+.++.++.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 70 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAF 70 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 45789999999999999999999999999986545666554
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=70.11 Aligned_cols=73 Identities=11% Similarity=0.323 Sum_probs=54.9
Q ss_pred ccceEEEEEEcCCChh-hHHHHHHHHHHHhhcCcC---ceEEEEEc-C------------------------------hh
Q psy160 208 ETQYLAVYFYKLNCNI-CDQILEGLEKVDDECDIY---GIHMVKIQ-D------------------------------PQ 252 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~-c~~~~~~~~~la~~~~~~---~i~~~~i~-~------------------------------~~ 252 (346)
..++++|.||++||++ |....|.+.++.+++.+. ++.++.++ + ..
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 3579999999999997 999999999999998742 57777772 1 24
Q ss_pred hhhhCC---------------CccccEEEEEeCCeEE-EeecCc
Q psy160 253 LAKRYS---------------IKTFPALVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 253 ~~~~~~---------------i~~~Pti~~~~~g~~~-~y~g~~ 280 (346)
+++.|+ +.+.|+++++.+|+.+ .+.|..
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~ 157 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDK 157 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHH
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCC
Confidence 555555 4578999999977744 345544
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-07 Score=74.74 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=63.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.|| ++||++|....|.+.++++++...++.++.+ | ...+++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence 4578999999 9999999999999999999885444544433 2 346889
Q ss_pred hhCCC-----CcceEEEEe-cCC-cceecCCcc---hhHHHHHHHhhc
Q psy160 151 KWGVT-----KLPAVVYFR-HRF-PSIYRGDLS---EEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~-----~~Ptl~~~~-~g~-~~~y~g~~~---~~~~i~~fi~~~ 188 (346)
.|++. ..|+++++. +|+ ...+.|... ..+++.+.+...
T Consensus 112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999 999999995 566 333555431 244777777654
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=68.92 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=55.6
Q ss_pred cceEEEEEEcCCChh-hHHHHHHHHHHHhhcCc----CceEEEEE--cC-----------------------------hh
Q psy160 209 TQYLAVYFYKLNCNI-CDQILEGLEKVDDECDI----YGIHMVKI--QD-----------------------------PQ 252 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~-c~~~~~~~~~la~~~~~----~~i~~~~i--~~-----------------------------~~ 252 (346)
.++++|.||++||++ |....|.+.++.+++.. .++.++.+ +. ..
T Consensus 26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (171)
T 2rli_A 26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ 105 (171)
T ss_dssp TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 578999999999998 99999999999998842 26777776 21 14
Q ss_pred hhhhCCCcccc---------------EEEEE-eCCeEEE-eecCcc
Q psy160 253 LAKRYSIKTFP---------------ALVYF-RNGNPLI-FEGENK 281 (346)
Q Consensus 253 ~~~~~~i~~~P---------------ti~~~-~~g~~~~-y~g~~~ 281 (346)
+++.|++...| +++++ ++|+.+. |.|..+
T Consensus 106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~ 151 (171)
T 2rli_A 106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRS 151 (171)
T ss_dssp HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCC
T ss_pred HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCC
Confidence 77889998888 66666 6787543 556553
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=63.52 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC--------hhhHHhhCCCCcceEEEEecC
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--------PRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~--------~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+.+++++.++ .++.|+++||++|+++.+.+.+++.... ++.++.++. ..+.+.+|+.++|+++ .+|
T Consensus 3 ~~~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~--~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~--~~g 76 (105)
T 1kte_A 3 AFVNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEG--LLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGK 76 (105)
T ss_dssp HHHHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTT--SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred hHHHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCC--ccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE--ECC
Confidence 4556666554 3678999999999999999998765532 266677663 2478899999999973 366
Q ss_pred C
Q psy160 167 F 167 (346)
Q Consensus 167 ~ 167 (346)
+
T Consensus 77 ~ 77 (105)
T 1kte_A 77 E 77 (105)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=68.15 Aligned_cols=73 Identities=27% Similarity=0.415 Sum_probs=55.0
Q ss_pred cceEEEEEEcCCChh-hHHHHHHHHHHHhhcCc----CceEEEEE--cC-----------------------------hh
Q psy160 209 TQYLAVYFYKLNCNI-CDQILEGLEKVDDECDI----YGIHMVKI--QD-----------------------------PQ 252 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~-c~~~~~~~~~la~~~~~----~~i~~~~i--~~-----------------------------~~ 252 (346)
.++++|.||++||++ |....|.+.++.+++++ .++.++.+ +. ..
T Consensus 23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 102 (164)
T 2ggt_A 23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ 102 (164)
T ss_dssp TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 579999999999998 99999999999988853 26777776 21 13
Q ss_pred hhhhCCCcccc---------------EEEEE-eCCeEEE-eecCcc
Q psy160 253 LAKRYSIKTFP---------------ALVYF-RNGNPLI-FEGENK 281 (346)
Q Consensus 253 ~~~~~~i~~~P---------------ti~~~-~~g~~~~-y~g~~~ 281 (346)
+++.|++...| +++++ ++|+.+. +.|..+
T Consensus 103 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~ 148 (164)
T 2ggt_A 103 VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKR 148 (164)
T ss_dssp HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCC
T ss_pred HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCC
Confidence 77889999999 55555 6787543 455543
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-06 Score=68.25 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=34.2
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|+ ..|.+.++.+++.+.++.++.+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~v 70 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGF 70 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEE
Confidence 357999999999999999 9999999999987645766665
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=62.71 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=50.3
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC-------hhhhhhCCCccccEEEEEeCC
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD-------PQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~-------~~~~~~~~i~~~Pti~~~~~g 271 (346)
+.++++++++. ++.|+++||++|+.+.+.+.+++..+. ++.+..+ .+ ..+.+.+++.++|++ |.+|
T Consensus 3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~~L~~~~~~~~--~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g 76 (105)
T 1kte_A 3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG--LLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGK 76 (105)
T ss_dssp HHHHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT--SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETT
T ss_pred hHHHhhcccCC--EEEEEcCCCHhHHHHHHHHHHcCCCCC--ccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECC
Confidence 34555655543 567999999999999999999876643 3666666 23 247788999999997 5578
Q ss_pred eEE
Q psy160 272 NPL 274 (346)
Q Consensus 272 ~~~ 274 (346)
+.+
T Consensus 77 ~~i 79 (105)
T 1kte_A 77 ECI 79 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=70.70 Aligned_cols=41 Identities=5% Similarity=0.063 Sum_probs=34.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|+..+|.+.++++++.+.++.++.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~v 88 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 88 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 45789999999999999999999999999986555666654
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.4e-06 Score=68.29 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=34.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|...+|.+.++++++...++.++.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v 86 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAF 86 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45789999999999999999999999999986545655554
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=74.98 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=50.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE----------------------------------------------E
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV----------------------------------------------K 34 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~----------------------------------------------~ 34 (346)
+.|+++||++|+++.|.++++++. ++.+. .
T Consensus 91 v~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~~~ 166 (216)
T 1eej_A 91 TVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVD 166 (216)
T ss_dssp EEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCC
T ss_pred EEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHHHH
Confidence 479999999999999999988752 11111 0
Q ss_pred cC-ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhc
Q psy160 35 IS-DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTS 79 (346)
Q Consensus 35 ~~-~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~ 79 (346)
++ +.+++.++||++.||+ ++.+|.. +.|.... +.+.++|..
T Consensus 167 v~~~~~l~~~~gV~gtPt~-v~~dG~~--~~G~~~~-~~l~~~l~~ 208 (216)
T 1eej_A 167 IADHYALGVQLGVSGTPAV-VLSNGTL--VPGYQPP-KEMKEFLDE 208 (216)
T ss_dssp HHHHHHHHHHHTCCSSSEE-ECTTSCE--EESCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCEE-EEcCCeE--ecCCCCH-HHHHHHHHH
Confidence 11 3578889999999998 5666643 5676554 477777654
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.2e-06 Score=69.92 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=56.9
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--------------------------ChhhhhhCCC
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------------------------DPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------------------------~~~~~~~~~i 259 (346)
.++++|.|| ++||++|....|.+.++.+++.+.++.++.+ + +..+++.|++
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 110 (187)
T 1we0_A 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV 110 (187)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence 478999999 9999999999999999999987545777666 2 3457888999
Q ss_pred c------cccEEEEE-eCCeEE-EeecC
Q psy160 260 K------TFPALVYF-RNGNPL-IFEGE 279 (346)
Q Consensus 260 ~------~~Pti~~~-~~g~~~-~y~g~ 279 (346)
. +.|+++++ ++|+.+ .+.|.
T Consensus 111 ~~~~~g~~~P~~~lid~~G~i~~~~~g~ 138 (187)
T 1we0_A 111 LNEETGLADRGTFIIDPDGVIQAIEINA 138 (187)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred CcCCCCceeeEEEEECCCCeEEEEEecC
Confidence 8 89999999 678754 34554
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.7e-06 Score=69.00 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|...+|.+.++++++++.++.++.+
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i 85 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF 85 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEE
T ss_pred CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEE
Confidence 46899999999999999999999999999996545555543
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=73.95 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=51.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEE--E----------------------------------------c---
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMV--K----------------------------------------I--- 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~--~----------------------------------------~--- 35 (346)
+.|+++||++|+++.|.++++.+. ++.+. . +
T Consensus 91 v~F~d~~Cp~C~~~~~~l~~~~~~----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~~~ 166 (211)
T 1t3b_A 91 TVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNI 166 (211)
T ss_dssp EEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSH
T ss_pred EEEECCCCHhHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHHHH
Confidence 479999999999999999987652 22221 0 0
Q ss_pred --CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhcc
Q psy160 36 --SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 36 --~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
.+.+++.++||++.||+++ .+|. .+.|.... +.+.++|.+.
T Consensus 167 v~~~~~l~~~~gV~gTPt~vi-~nG~--~~~G~~~~-~~l~~~l~~~ 209 (211)
T 1t3b_A 167 VKKHYELGIQFGVRGTPSIVT-STGE--LIGGYLKP-ADLLRALEET 209 (211)
T ss_dssp HHHHHHHHHHHTCCSSCEEEC-TTSC--CCCSCCCH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcCCEEEE-eCCE--EecCCCCH-HHHHHHHHhc
Confidence 1356788999999999887 6776 35676554 4788877643
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=65.94 Aligned_cols=41 Identities=7% Similarity=0.241 Sum_probs=36.4
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++.+.++.++.+
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAF 71 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEE
Confidence 35799999999999999999999999999997645888877
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.7e-06 Score=70.71 Aligned_cols=81 Identities=7% Similarity=0.075 Sum_probs=57.2
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--e---------------------------------------
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--M--------------------------------------- 143 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~--------------------------------------- 143 (346)
+..++.|+++||++|+++.+.+.++.+. . ++.+.. +
T Consensus 98 k~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~ 174 (241)
T 1v58_A 98 PVIVYVFADPFCPYCKQFWQQARPWVDS-G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 174 (241)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHT-T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHhC-C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence 4579999999999999999998876654 1 233321 1
Q ss_pred ------------CChhhHHhhCCCCcceEEEEe-cCCcceecCCcchhHHHHHHHhhcc
Q psy160 144 ------------ADPRYARKWGVTKLPAVVYFR-HRFPSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 144 ------------~~~~l~~~~~i~~~Ptl~~~~-~g~~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
.+..+++++||++.||+++.. +|+.....|..+.+ .|.+++.+..
T Consensus 175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~-~L~~~l~~~~ 232 (241)
T 1v58_A 175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQK-TLNIIMGNKL 232 (241)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHH-HHHHHTTC--
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHH-HHHHHHHHHH
Confidence 023467899999999999986 35444577877644 7888877653
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=98.09 E-value=8.7e-06 Score=66.86 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=35.6
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|...+|.+.++++++.+.++.++.+
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i 77 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAF 77 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEE
Confidence 45789999999999999999999999999997666666655
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=64.48 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=36.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++.+.++.++.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 70 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAF 70 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 35799999999999999999999999999987646888777
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-06 Score=68.68 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=61.4
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.|| +.||++|....|.+.+++++++..++.++.+ | ...+++
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 114 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK 114 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence 3578999999 9999999999999999999985545555543 2 236888
Q ss_pred hhCCC------CcceEEEEe-cCCc-ceecCCcc---hhHHHHHHHhhc
Q psy160 151 KWGVT------KLPAVVYFR-HRFP-SIYRGDLS---EEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~------~~Ptl~~~~-~g~~-~~y~g~~~---~~~~i~~fi~~~ 188 (346)
.|++. .+|+++++. +|+. ..+.|... ..+++++.++..
T Consensus 115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 99999 999999985 5652 23334322 134677766543
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-06 Score=67.79 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=35.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++.+.++.++.+
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v 87 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF 87 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35799999999999999999999999999997645777777
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-06 Score=67.24 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||+.|...+|.+.++++++.+.++.++.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~i 88 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAF 88 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 45789999999999999999999999999986555666554
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.1e-06 Score=68.01 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=56.9
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c--------------------------ChhhhhhCCC
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q--------------------------DPQLAKRYSI 259 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~--------------------------~~~~~~~~~i 259 (346)
.++++|.|| ++||++|....|.+.++.+++.+.++.++.| + +..+++.|++
T Consensus 45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 124 (195)
T 2bmx_A 45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV 124 (195)
T ss_dssp TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence 578999999 9999999999999999999987545777766 2 2356778999
Q ss_pred c-----cccEEEEE-eCCeEEE-eecCc
Q psy160 260 K-----TFPALVYF-RNGNPLI-FEGEN 280 (346)
Q Consensus 260 ~-----~~Pti~~~-~~g~~~~-y~g~~ 280 (346)
. ++|+++++ ++|+.+. +.|..
T Consensus 125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~ 152 (195)
T 2bmx_A 125 LNADGVADRVTFIVDPNNEIQFVSATAG 152 (195)
T ss_dssp BCTTSSBCEEEEEECTTSBEEEEEEECT
T ss_pred cccCCCccceEEEEcCCCeEEEEEecCC
Confidence 9 99999999 4777443 44543
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.3e-06 Score=66.93 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=27.9
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcC
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECD 239 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~ 239 (346)
.++.++.|+++||++|..+.|.+.++.+++.
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~ 52 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDADP 52 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999988765
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=53.98 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=46.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH---hhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR---KWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~---~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
++.|+++||++|++..+.++++. ..+..+.++ ++.+.. ++++.++|++.+ +|+. ..| .+ .+.+.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~-----i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~--~~g-~~-~~~l~~ 71 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRAG-----LAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH--WSG-FR-PERIKQ 71 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE--EES-CC-HHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE--EcC-CC-HHHHHH
Confidence 67899999999999999888752 335566665 444444 899999999984 5542 334 33 336776
Q ss_pred HH
Q psy160 184 WL 185 (346)
Q Consensus 184 fi 185 (346)
++
T Consensus 72 ~l 73 (75)
T 1r7h_A 72 LQ 73 (75)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=62.61 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHHhcCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCC-cEEEEeC----------------------ChhhHHhhC
Q psy160 98 DKLLEENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMD-ITFVKMA----------------------DPRYARKWG 153 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~-i~~~~~~----------------------~~~l~~~~~ 153 (346)
.++..+++++++.|| +.||+.|...+|.+.++.++++..+ +..+.+| ...+++.||
T Consensus 29 ~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 108 (159)
T 2a4v_A 29 KKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLG 108 (159)
T ss_dssp HHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHT
T ss_pred HHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 334334446788887 8999999999999999999885443 2222322 346888999
Q ss_pred CCCcc-------eEEEEecCC-cceecCCc
Q psy160 154 VTKLP-------AVVYFRHRF-PSIYRGDL 175 (346)
Q Consensus 154 i~~~P-------tl~~~~~g~-~~~y~g~~ 175 (346)
+...| ++++ ++|+ ...+.|..
T Consensus 109 v~~~p~~g~~~~~~li-~~G~i~~~~~g~~ 137 (159)
T 2a4v_A 109 AKKTPLSGSIRSHFIF-VDGKLKFKRVKIS 137 (159)
T ss_dssp CBSSSSSCBCCEEEEE-ETTEEEEEEESCC
T ss_pred CcccccCCccceEEEE-cCCEEEEEEccCC
Confidence 99988 6666 8787 33455643
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-06 Score=68.60 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.|| ++||++|....|.+.++++++...++.++.+ | ...+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 109 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR 109 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence 4578999999 9999999999999999999885434444432 2 246888
Q ss_pred hhCCC-----CcceEEEEe-cCCc-ceecCCcc---hhHHHHHHHhh
Q psy160 151 KWGVT-----KLPAVVYFR-HRFP-SIYRGDLS---EEEEVLQWLIT 187 (346)
Q Consensus 151 ~~~i~-----~~Ptl~~~~-~g~~-~~y~g~~~---~~~~i~~fi~~ 187 (346)
.|++. ..|+++++. +|+. ..+.|... ..+++++.+..
T Consensus 110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~ 156 (192)
T 2h01_A 110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 156 (192)
T ss_dssp HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 99999 899999994 5663 33444321 13356666554
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.02 E-value=7.5e-06 Score=69.72 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=60.0
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHHh
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYARK 151 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~~ 151 (346)
+++++|.|| +.||+.|....|.+.++++++...++.++.+ | ...+++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 478999999 9999999999999999999885444444433 2 2468889
Q ss_pred hCCC------CcceEEEEe-cCCc-ceecCCcc---hhHHHHHHHhh
Q psy160 152 WGVT------KLPAVVYFR-HRFP-SIYRGDLS---EEEEVLQWLIT 187 (346)
Q Consensus 152 ~~i~------~~Ptl~~~~-~g~~-~~y~g~~~---~~~~i~~fi~~ 187 (346)
|++. .+|+++++. +|+. ..+.|... ..+++++.++.
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~ 182 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA 182 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999 999999994 5662 22344321 12366666654
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.02 E-value=7.1e-06 Score=68.52 Aligned_cols=72 Identities=10% Similarity=0.233 Sum_probs=57.1
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| ++||++|....|.+.++.+++.+.++.++.+ + +..+++.
T Consensus 33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (198)
T 1zof_A 33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD 112 (198)
T ss_dssp SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence 468999999 9999999999999999999886545777766 1 3467889
Q ss_pred CCCc-----cccEEEEE-eCCeEEE-eecCc
Q psy160 257 YSIK-----TFPALVYF-RNGNPLI-FEGEN 280 (346)
Q Consensus 257 ~~i~-----~~Pti~~~-~~g~~~~-y~g~~ 280 (346)
|++. +.|+++++ ++|+.+. +.|..
T Consensus 113 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~ 143 (198)
T 1zof_A 113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDL 143 (198)
T ss_dssp TTCEETTTEECEEEEEEETTTEEEEEEEESS
T ss_pred hCCcccCCcccceEEEECCCCEEEEEEecCC
Confidence 9998 99999888 5787543 44543
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=67.81 Aligned_cols=41 Identities=2% Similarity=0.069 Sum_probs=34.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|+++||++|+..+|.++++++++...++.++.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v 86 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGF 86 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEE
Confidence 45789999999999999999999999999986555666544
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=66.39 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=36.2
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++.+.++.++.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~v 88 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 88 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 35799999999999999999999999999998645888777
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=63.83 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=35.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~i 88 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAF 88 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 35799999999999999999999999999997646777777
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=64.56 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=36.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++.+.++.++.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v 86 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAF 86 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35799999999999999999999999999997645777777
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.3e-05 Score=65.09 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=36.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|+...|.+.++.+++++.++.++.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v 86 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGF 86 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEE
Confidence 35789999999999999999999999999997656888777
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=66.61 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=55.7
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| ++||++|....|.+.++.+++++.++.++.| + +..+++.
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 110 (192)
T 2h01_A 31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS 110 (192)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence 468999999 9999999999999999999986445766666 1 2357888
Q ss_pred CCCc-----cccEEEEE-eCCeEEE-eecC
Q psy160 257 YSIK-----TFPALVYF-RNGNPLI-FEGE 279 (346)
Q Consensus 257 ~~i~-----~~Pti~~~-~~g~~~~-y~g~ 279 (346)
|++. ..|+++++ ++|+... +.|.
T Consensus 111 ~gv~~~~g~~~P~~~liD~~G~i~~~~~g~ 140 (192)
T 2h01_A 111 YDVLFNESVALRAFVLIDKQGVVQHLLVNN 140 (192)
T ss_dssp TTCEETTTEECCEEEEECTTSBEEEEEEGG
T ss_pred hCCcCcCCceeeEEEEEcCCCEEEEEEeCC
Confidence 9998 89999999 5777433 3453
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=67.51 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=59.1
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.|| +.||+.|....|.+.+++++++..++.++.+ | ...+++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 130 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK 130 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence 4578899999 9999999999999999999885434444432 2 346888
Q ss_pred hhCCC-----CcceEEEEe-cCCc-ceecCCcc---hhHHHHHHHhh
Q psy160 151 KWGVT-----KLPAVVYFR-HRFP-SIYRGDLS---EEEEVLQWLIT 187 (346)
Q Consensus 151 ~~~i~-----~~Ptl~~~~-~g~~-~~y~g~~~---~~~~i~~fi~~ 187 (346)
.|++. ..|+++++. +|+. ..+.|... ..+++++.++.
T Consensus 131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~ 177 (213)
T 2i81_A 131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDA 177 (213)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 99998 899888885 4652 22333221 13367666654
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=61.60 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=53.3
Q ss_pred HHHHhccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhC
Q psy160 203 ETMVEETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRY 257 (346)
Q Consensus 203 ~~~~~~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~ 257 (346)
.++....++++|.|| +.||++|....|.+.++.+++++.+ .++.| .+..+++.|
T Consensus 29 ~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 107 (159)
T 2a4v_A 29 KKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLL 107 (159)
T ss_dssp HHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred HHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 333333347888887 8999999999999999999887544 55444 133567788
Q ss_pred CCcccc-------EEEEEeCCeEEE-eecC
Q psy160 258 SIKTFP-------ALVYFRNGNPLI-FEGE 279 (346)
Q Consensus 258 ~i~~~P-------ti~~~~~g~~~~-y~g~ 279 (346)
++...| ++++ ++|+... +.|.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEEEESC
T ss_pred CCcccccCCccceEEEE-cCCEEEEEEccC
Confidence 888888 6667 9998543 4454
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.4e-05 Score=61.98 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=58.6
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEE--eC----------------------ChhhHHhhCCCC-
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK--MA----------------------DPRYARKWGVTK- 156 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~----------------------~~~l~~~~~i~~- 156 (346)
.+++++|.||+ .||++|...+|.+.++.++++..++.++. +| ...+++.|++..
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 113 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE 113 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence 34688999998 99999999999999999998554454443 22 346778888877
Q ss_pred -----------cceEEEEe-cCCc-ceecCCcc--hhHHHHHHHhh
Q psy160 157 -----------LPAVVYFR-HRFP-SIYRGDLS--EEEEVLQWLIT 187 (346)
Q Consensus 157 -----------~Ptl~~~~-~g~~-~~y~g~~~--~~~~i~~fi~~ 187 (346)
.|+.+++. +|+. ..|.+... ..+++++.+++
T Consensus 114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~ 159 (163)
T 3gkn_A 114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKA 159 (163)
T ss_dssp EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHH
Confidence 89999985 4653 23433221 12356665544
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=3e-05 Score=60.15 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=49.2
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----h----hhHHhhCCCCcceEEEE
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----P----RYARKWGVTKLPAVVYF 163 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~----~l~~~~~i~~~Ptl~~~ 163 (346)
-..+.+++++..+. ++.|+++||++|+++.+.+.++.. .+..+.++. + .+++.+++..+|+++
T Consensus 15 ~~~~~~~~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~i-----~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~-- 85 (130)
T 2cq9_A 15 APVNQIQETISDNC--VVIFSKTSCSYCTMAKKLFHDMNV-----NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-- 85 (130)
T ss_dssp CHHHHHHHHHHHSS--EEEEECSSCSHHHHHHHHHHHHTC-----CCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--
T ss_pred HHHHHHHHHHcCCc--EEEEEcCCChHHHHHHHHHHHcCC-----CcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--
Confidence 34566777776654 445999999999999999988653 355666662 2 378899999999984
Q ss_pred ecCC
Q psy160 164 RHRF 167 (346)
Q Consensus 164 ~~g~ 167 (346)
.+|+
T Consensus 86 i~G~ 89 (130)
T 2cq9_A 86 VNGT 89 (130)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 3664
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-05 Score=65.44 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.5
Q ss_pred cCCcEEEEEECCCChh-HHHHHHHHHHHHhhcc
Q psy160 103 ENEFVTVFFYETDHKD-SVKVLERLEKIDGETD 134 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~-c~~~~~~~~~~a~~~~ 134 (346)
.+++++|.|+++||++ |...+|.+.++.+.+.
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~ 72 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLS 72 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHH
Confidence 4578999999999997 9999999999888773
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=65.49 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=53.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| ++||++|....+.+.++.+++++.++.++.| + +..+++.
T Consensus 36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 115 (202)
T 1uul_A 36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 115 (202)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence 468999999 9999999999999999999986546777776 1 2357788
Q ss_pred CCCc------cccEEEEE-eCCeEE
Q psy160 257 YSIK------TFPALVYF-RNGNPL 274 (346)
Q Consensus 257 ~~i~------~~Pti~~~-~~g~~~ 274 (346)
|++. ++|+++++ ++|+..
T Consensus 116 ygv~~~~~g~~~P~~~lid~~G~i~ 140 (202)
T 1uul_A 116 YGVLKEEDGVAYRGLFIIDPKQNLR 140 (202)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEE
T ss_pred cCCccCCCCceeeEEEEECCCCEEE
Confidence 8998 99999888 567643
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=97.88 E-value=2.5e-05 Score=66.54 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=59.7
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEE--eC-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK--MA-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~-----------------------------~~~l~~ 150 (346)
.+++++|.|++ .||++|...+|.+.+++++++..++.++. +| ...+++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 45789999996 99999999999999999999654555543 33 125778
Q ss_pred hhCCC------CcceEEEEe-cCC-cceecCCcch---hHHHHHHHhh
Q psy160 151 KWGVT------KLPAVVYFR-HRF-PSIYRGDLSE---EEEVLQWLIT 187 (346)
Q Consensus 151 ~~~i~------~~Ptl~~~~-~g~-~~~y~g~~~~---~~~i~~fi~~ 187 (346)
.|++. .+|+.+++. +|+ ...+.|.... .+++++.+..
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 89998 899999985 465 2334443221 2356666544
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=54.14 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=46.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH---hhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR---KWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~---~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
++.|+++||++|+++.+.+++.. ..+..++++ ++.+.+ ++|+.++|++. .+|+. ..| .+ .+.|.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~~-----i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~--~~g-~~-~~~l~~ 71 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENRG-----FDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS--WSG-FR-PDMINR 71 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE--EES-CC-HHHHGG
T ss_pred EEEEcCCCChhHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE--Eec-CC-HHHHHH
Confidence 67899999999999999988742 335566666 344443 58999999983 36643 223 33 335666
Q ss_pred HHhh
Q psy160 184 WLIT 187 (346)
Q Consensus 184 fi~~ 187 (346)
++.+
T Consensus 72 ~l~~ 75 (81)
T 1h75_A 72 LHPA 75 (81)
T ss_dssp GSCC
T ss_pred HHhc
Confidence 6543
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.1e-05 Score=60.65 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=49.0
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C---h----hhHHhhCCCCcceEEEEe
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D---P----RYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~---~----~l~~~~~i~~~Ptl~~~~ 164 (346)
..+.+++++.+.. ++.|+++||++|+++.+.+.++.. .+..+.++ . + .+++.+|+.++|+++ .
T Consensus 38 ~~~~~~~~i~~~~--Vvvf~~~~Cp~C~~~k~~L~~~~i-----~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i 108 (146)
T 2ht9_A 38 PVNQIQETISDNC--VVIFSKTSCSYCTMAKKLFHDMNV-----NYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V 108 (146)
T ss_dssp CHHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--E
T ss_pred HHHHHHHHhcCCC--EEEEECCCChhHHHHHHHHHHcCC-----CeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--E
Confidence 3567777777653 445999999999999999988753 35556665 2 2 378899999999984 3
Q ss_pred cCC
Q psy160 165 HRF 167 (346)
Q Consensus 165 ~g~ 167 (346)
+|+
T Consensus 109 ~G~ 111 (146)
T 2ht9_A 109 NGT 111 (146)
T ss_dssp TTE
T ss_pred CCE
Confidence 664
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=66.98 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=51.8
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----------------------------------------
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---------------------------------------- 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---------------------------------------- 248 (346)
.+..++.|+++||++|+++.+.+.++.+. + ++.+..+
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~ 173 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS--G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV 173 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT--T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC--C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence 45689999999999999999999887664 2 4554432
Q ss_pred -------------cChhhhhhCCCccccEEEEEe-CCeEEEeecCcc
Q psy160 249 -------------QDPQLAKRYSIKTFPALVYFR-NGNPLIFEGENK 281 (346)
Q Consensus 249 -------------~~~~~~~~~~i~~~Pti~~~~-~g~~~~y~g~~~ 281 (346)
.+..+++++||+++||+++.. +|+.....|..+
T Consensus 174 ~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~ 220 (241)
T 1v58_A 174 PANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPD 220 (241)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCC
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCC
Confidence 123356788999999999987 476545677654
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=65.50 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=55.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| ++||++|....+.+.++.+++++.++.++.| + +..+++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 478999999 9999999999999999999986445776666 1 2357888
Q ss_pred CCCc------cccEEEEE-eCCeEEE-eecC
Q psy160 257 YSIK------TFPALVYF-RNGNPLI-FEGE 279 (346)
Q Consensus 257 ~~i~------~~Pti~~~-~~g~~~~-y~g~ 279 (346)
|++. .+|+++++ ++|+.+. +.|.
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~ 166 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVND 166 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecC
Confidence 9998 99999999 5776432 3444
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=64.50 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=56.1
Q ss_pred ccceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhh
Q psy160 208 ETQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAK 255 (346)
Q Consensus 208 ~~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~ 255 (346)
..++++|.||+ .||++|....|.+.++.+++++.++.++.| + +..+++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 35789999996 999999999999999999997546777776 1 124677
Q ss_pred hCCCc------cccEEEEE-eCCeEE-EeecCc
Q psy160 256 RYSIK------TFPALVYF-RNGNPL-IFEGEN 280 (346)
Q Consensus 256 ~~~i~------~~Pti~~~-~~g~~~-~y~g~~ 280 (346)
.|++. .+|+.+++ ++|+.+ .+.|..
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~ 180 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDK 180 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECT
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCC
Confidence 88988 89999888 577643 344543
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=56.75 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=44.2
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhc-CCCCCCeEEEEeCCceeeecCCCCCHHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKY-NIINLPSLVYFRKQVPLLYDGDLFDEEKILTW 76 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~-~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~ 76 (346)
+.|+++||++|+++.+.|++..-. +..+.++ ..++...+ ++.+.|+++ .+|..+ |+ .+++.++
T Consensus 9 ~~y~~~~C~~C~~~~~~L~~~~i~-----~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i---~g---~~~i~~~ 75 (89)
T 2klx_A 9 ILYTRPNCPYCKRARDLLDKKGVK-----YTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV---GG---CDDLYAL 75 (89)
T ss_dssp EEESCSCCTTTHHHHHHHHHHTCC-----EEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC---CS---HHHHHHH
T ss_pred EEEECCCChhHHHHHHHHHHcCCC-----cEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE---eC---hHHHHHH
Confidence 368999999999999888765322 2233344 24677788 999999974 466542 22 2466666
Q ss_pred Hhcc
Q psy160 77 LTSQ 80 (346)
Q Consensus 77 i~~~ 80 (346)
+.+.
T Consensus 76 ~~~g 79 (89)
T 2klx_A 76 ENKG 79 (89)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 5543
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=56.91 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=74.9
Q ss_pred HhccCCccccCceeecCHHHHHHHHhcCCcEEEE-EECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hhhHH
Q psy160 77 LTSQDVFEIKNEIEEVNRRMLDKLLEENEFVTVF-FYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYAR 150 (346)
Q Consensus 77 i~~~~~p~~~~~v~~l~~~~~~~~~~~~~~~lv~-F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~l~~ 150 (346)
+.++..| .|.++|.++..++..+.-+..++ |..+.-..-..+.+.+.++|+.+++ ++.|+.+|. ..+..
T Consensus 8 ~~~~~~P----LV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg-ki~Fv~vd~~~~~~~~~l~ 82 (147)
T 3bj5_A 8 MKHNQLP----LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFAFIDSDHTDNQRILE 82 (147)
T ss_dssp -----------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT-TCEEEEECTTCGGGHHHHH
T ss_pred hhhccCC----eeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC-ceEEEEEecchHhHHHHHH
Confidence 3456778 99999999999998776555444 5544444567889999999999976 388888774 34678
Q ss_pred hhCCCC--cceEEEEec-CC--cceec-CCcchhHHHHHHHhhccc
Q psy160 151 KWGVTK--LPAVVYFRH-RF--PSIYR-GDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 151 ~~~i~~--~Ptl~~~~~-g~--~~~y~-g~~~~~~~i~~fi~~~~~ 190 (346)
.||+.. .|+++++.. +. .+.+. +..+ .+.|.+|+.+...
T Consensus 83 ~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t-~~~i~~Fv~d~l~ 127 (147)
T 3bj5_A 83 FFGLKKEECPAVRLITLEEEMTKYKPESEELT-AERITEFCHRFLE 127 (147)
T ss_dssp HTTCCGGGCSEEEEEECSSSCEEECCSCCCCC-HHHHHHHHHHHHT
T ss_pred HcCCCcccCCEEEEEecccccccCCCCcccCC-HHHHHHHHHHHHc
Confidence 999986 899999875 33 33443 6676 4489999988543
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.8e-05 Score=64.33 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=52.0
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| ++||++|....|.+.++++++++.++.++.| + +..+++.
T Consensus 52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 131 (213)
T 2i81_A 52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD 131 (213)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence 468999999 9999999999999999999986445666665 1 2457888
Q ss_pred CCCc-----cccEEEEE-eCCeE
Q psy160 257 YSIK-----TFPALVYF-RNGNP 273 (346)
Q Consensus 257 ~~i~-----~~Pti~~~-~~g~~ 273 (346)
|++. ..|+++++ ++|+.
T Consensus 132 ygv~~~~g~~~p~~~lID~~G~i 154 (213)
T 2i81_A 132 YNVLFDDSVSLRAFVLIDMNGIV 154 (213)
T ss_dssp TTCEETTTEECEEEEEECTTSBE
T ss_pred hCCccccCCcccEEEEECCCCEE
Confidence 9998 89988888 46764
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.7e-05 Score=57.95 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHH-HHHHHHHHhhccCCCcEEEEeC-C-------hhhHHhhCCCCcceEEEEe
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKV-LERLEKIDGETDNMDITFVKMA-D-------PRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~-~~~~~~~a~~~~~~~i~~~~~~-~-------~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++++...+ ++.|+++||++|+++ .+.+.+... ....+..+.++ . ..+.+.+|+.++|++ |.
T Consensus 15 ~~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi 88 (118)
T 3c1r_A 15 IKHVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YI 88 (118)
T ss_dssp HHHHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred HHHHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence 456667776654 567999999999998 887766541 11234455555 2 258889999999987 44
Q ss_pred cCC
Q psy160 165 HRF 167 (346)
Q Consensus 165 ~g~ 167 (346)
+|+
T Consensus 89 ~g~ 91 (118)
T 3c1r_A 89 NGK 91 (118)
T ss_dssp TTE
T ss_pred CCE
Confidence 665
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=61.59 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
++++.++.|+++||++|.++.|.+.++.+.+.. ++.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~ 61 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFV 61 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEE
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEE
Confidence 456789999999999999999999999888743 34443
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=97.78 E-value=8.5e-05 Score=59.90 Aligned_cols=85 Identities=7% Similarity=0.027 Sum_probs=56.1
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeC------------------------ChhhHHhhCCCC-
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMA------------------------DPRYARKWGVTK- 156 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------------------------~~~l~~~~~i~~- 156 (346)
.+++++|.|+++| |++|....|.+.++++++.+..+..+.+| ...+++.|++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~ 122 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK 122 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence 4578999999999 99999999999999988733222222222 235778888876
Q ss_pred -----cceEEEEe-cCC-cceecCC----cchhHHHHHHHhh
Q psy160 157 -----LPAVVYFR-HRF-PSIYRGD----LSEEEEVLQWLIT 187 (346)
Q Consensus 157 -----~Ptl~~~~-~g~-~~~y~g~----~~~~~~i~~fi~~ 187 (346)
.|+.+++. +|+ ...+.|. ....+++++.+++
T Consensus 123 ~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ 164 (167)
T 2jsy_A 123 ELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKA 164 (167)
T ss_dssp TTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHH
T ss_pred cCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 48888875 465 3334332 1112366666654
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.1e-05 Score=58.83 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=47.6
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C---h----hhhhhCCCccccEEEEEe
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D---P----QLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~---~----~~~~~~~i~~~Pti~~~~ 269 (346)
..+.++++++.+. ++.|+++||++|+.+.+.+.+++- .+....++ + + .+.+.+++.++|++ |.
T Consensus 16 ~~~~~~~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~i-----~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~i 86 (130)
T 2cq9_A 16 PVNQIQETISDNC--VVIFSKTSCSYCTMAKKLFHDMNV-----NYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FV 86 (130)
T ss_dssp HHHHHHHHHHHSS--EEEEECSSCSHHHHHHHHHHHHTC-----CCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--EE
T ss_pred HHHHHHHHHcCCc--EEEEEcCCChHHHHHHHHHHHcCC-----CcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--EE
Confidence 3455666666553 344999999999999999998753 33445552 2 3 27788999999998 34
Q ss_pred CCeEE
Q psy160 270 NGNPL 274 (346)
Q Consensus 270 ~g~~~ 274 (346)
+|+.+
T Consensus 87 ~G~~i 91 (130)
T 2cq9_A 87 NGTFI 91 (130)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 78754
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.5e-05 Score=56.21 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hh----hHHhhCCCCcceEEEEe
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PR----YARKWGVTKLPAVVYFR 164 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~----l~~~~~i~~~Ptl~~~~ 164 (346)
.+.+++++.+++ ++.|+++||++|++..+.+.+..-. ...+.++. +. +.+..|...+|++ |.
T Consensus 9 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~i~-----~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi 79 (113)
T 3rhb_A 9 EESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLGVQ-----PLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FV 79 (113)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTTCC-----CEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred HHHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcCCC-----CeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence 355666666655 6789999999999999999875433 45556542 22 5556799999998 44
Q ss_pred cCC
Q psy160 165 HRF 167 (346)
Q Consensus 165 ~g~ 167 (346)
+|+
T Consensus 80 ~g~ 82 (113)
T 3rhb_A 80 CGK 82 (113)
T ss_dssp TTE
T ss_pred CCE
Confidence 664
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=6.3e-05 Score=59.55 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=48.2
Q ss_pred cHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-C---h----hhhhhCCCccccEEEEEe
Q psy160 198 TRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-D---P----QLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-~---~----~~~~~~~i~~~Pti~~~~ 269 (346)
..+.++++++.+. + +.|+++||++|+.+.+.+.+++.. +....++ + + .+.+.+++.++|++ |.
T Consensus 38 ~~~~~~~~i~~~~-V-vvf~~~~Cp~C~~~k~~L~~~~i~-----~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi 108 (146)
T 2ht9_A 38 PVNQIQETISDNC-V-VIFSKTSCSYCTMAKKLFHDMNVN-----YKVVELDLLEYGNQFQDALYKMTGERTVPRI--FV 108 (146)
T ss_dssp CHHHHHHHHHHCS-E-EEEECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EE
T ss_pred HHHHHHHHhcCCC-E-EEEECCCChhHHHHHHHHHHcCCC-----eEEEECccCcCCHHHHHHHHHHhCCCCcCeE--EE
Confidence 3456677776653 3 449999999999999999988533 3445552 2 3 37788999999998 45
Q ss_pred CCeEE
Q psy160 270 NGNPL 274 (346)
Q Consensus 270 ~g~~~ 274 (346)
+|+.+
T Consensus 109 ~G~~i 113 (146)
T 2ht9_A 109 NGTFI 113 (146)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 78754
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=97.76 E-value=5.3e-05 Score=60.80 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=50.5
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCcc--
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKT-- 261 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~~-- 261 (346)
.++++|.||+ .||++|....|.+.++.+++++.++.++.| .+..+++.|++..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 4588999998 999999999999999999887545666665 1235667788766
Q ss_pred ----------ccEEEEEe-CCeE
Q psy160 262 ----------FPALVYFR-NGNP 273 (346)
Q Consensus 262 ----------~Pti~~~~-~g~~ 273 (346)
.|+.+++. +|+.
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i 137 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQV 137 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCE
T ss_pred ccccccccCcceEEEEECCCCeE
Confidence 79888884 6664
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=9.1e-05 Score=51.89 Aligned_cols=54 Identities=13% Similarity=0.409 Sum_probs=38.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh---hCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK---RYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~---~~~i~~~Pti~~~~~g~~ 273 (346)
++.|+++||++|+.+.+.++++. ..+....+ .++++.+ ++++.++|++ +.+|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~~-----i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~ 60 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENRG-----FDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS 60 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE
T ss_pred EEEEcCCCChhHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE
Confidence 56799999999999999988753 23344444 3444433 5899999998 457764
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.74 E-value=3.2e-05 Score=58.45 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C-------hhhHHhhCCCCcceEEEEecC
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D-------PRYARKWGVTKLPAVVYFRHR 166 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~-------~~l~~~~~i~~~Ptl~~~~~g 166 (346)
+.+++++.+ ..++.|+++||++|+++.+.+.++.... . .+..+.++ . ..+.+.+|+.++|++++ +|
T Consensus 10 ~~~~~~i~~--~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~-~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g 83 (114)
T 2hze_A 10 EFVQQRLAN--NKVTIFVKYTCPFCRNALDILNKFSFKR-G-AYEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GK 83 (114)
T ss_dssp HHHHTTCCT--TCEEEEECTTCHHHHHHHHHHTTSCBCT-T-SEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TT
T ss_pred HHHHHHhcc--CCEEEEEeCCChhHHHHHHHHHHcCCCc-C-ceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CC
Confidence 334444433 3578899999999999999887754331 1 15556665 2 26888999999999743 66
Q ss_pred C
Q psy160 167 F 167 (346)
Q Consensus 167 ~ 167 (346)
+
T Consensus 84 ~ 84 (114)
T 2hze_A 84 T 84 (114)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.74 E-value=2.9e-05 Score=58.67 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=43.4
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC-------hhhhhhCCCccccEEEEEeCCeEE
Q psy160 212 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD-------PQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 212 ~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~-------~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
.++.|+++||++|+.+.+.+.+++... + .+....+ .+ ..+.+.+++.++|+++ .+|+.+
T Consensus 20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~-~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~i 86 (114)
T 2hze_A 20 KVTIFVKYTCPFCRNALDILNKFSFKR-G-AYEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSI 86 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHTTSCBCT-T-SEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEE
T ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCc-C-ceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 467799999999999999998876442 2 2555555 33 2678889999999874 378754
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=60.36 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=29.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN 135 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~ 135 (346)
.+++.++.|+++||++|+++.|.+.++.+.+.+
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~ 56 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ 56 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC
Confidence 357789999999999999999999999888743
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=97.74 E-value=5.4e-05 Score=62.52 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=30.8
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKI 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 35 (346)
|.||++||++|+..+|.|.++++.+++.|+.++.+
T Consensus 51 v~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i 85 (187)
T 3dwv_A 51 IYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAF 85 (187)
T ss_dssp EEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEE
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEE
Confidence 57999999999999999999999997777777654
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00013 Score=50.13 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=39.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhh---hCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAK---RYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~---~~~i~~~Pti~~~~~g~~ 273 (346)
++.|+++||++|+.+.+.++++. ..+....+ .+++..+ ++++.++|+++. +|+.
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~-----i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~ 60 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRAG-----LAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH 60 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE
T ss_pred EEEEeCCCChHHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE
Confidence 56789999999999999998763 23444455 3444444 799999999873 7764
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=52.76 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC------C----hhhHHhhCCCCcceEEEEecCCcceecCCcch
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA------D----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSE 177 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~ 177 (346)
++.|+++||++|++..+.++++.-. +..+.++ . ..+.+.+++.++|++.+ +|+. ..| .+
T Consensus 14 v~ly~~~~Cp~C~~~~~~L~~~gi~-----~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~--i~G-~~- 82 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLEFLKREGVD-----FEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH--VLG-YN- 82 (92)
T ss_dssp SEEEECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE--EES-CC-
T ss_pred EEEEECCCChHHHHHHHHHHHcCCC-----cEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE--EeC-CC-
Confidence 6789999999999999998886533 4555655 1 55677899999999987 5532 223 34
Q ss_pred hHHHHHHHh
Q psy160 178 EEEVLQWLI 186 (346)
Q Consensus 178 ~~~i~~fi~ 186 (346)
.+.|.+++.
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 447777764
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=8.8e-05 Score=56.42 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=46.3
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHH-HHHHHHHHhhcCcCceEEEEE-cC-------hhhhhhCCCccccEEEEEeC
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQI-LEGLEKVDDECDIYGIHMVKI-QD-------PQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~-~~~~~~la~~~~~~~i~~~~i-~~-------~~~~~~~~i~~~Pti~~~~~ 270 (346)
+.++++++..+ ++.|+++||++|+.+ .+.+.+++. ....+....+ .+ ..+.+.+++.++|++ |.+
T Consensus 16 ~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~ 89 (118)
T 3c1r_A 16 KHVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YIN 89 (118)
T ss_dssp HHHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 34455555443 556999999999998 888877652 1113444455 22 257888999999986 668
Q ss_pred CeEE
Q psy160 271 GNPL 274 (346)
Q Consensus 271 g~~~ 274 (346)
|+.+
T Consensus 90 g~~i 93 (118)
T 3c1r_A 90 GKHI 93 (118)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 8754
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=97.67 E-value=7.4e-05 Score=60.52 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=32.2
Q ss_pred cCCcEEEEEECCCCh-hHHHHHHHHHHHHhhccCC--CcEEEE
Q psy160 103 ENEFVTVFFYETDHK-DSVKVLERLEKIDGETDNM--DITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~-~c~~~~~~~~~~a~~~~~~--~i~~~~ 142 (346)
.+++++|.|+++||+ +|....|.+.++.+.+... ++.++.
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~ 74 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 467899999999999 9999999999999888432 254444
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5.9e-05 Score=61.81 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=36.5
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.||++||++|....|.+.++.+++++.++.++.+
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i 77 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAF 77 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEE
Confidence 35799999999999999999999999999998756887777
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=97.66 E-value=5.9e-05 Score=61.55 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=47.8
Q ss_pred cCCcEEEEEECCC-ChhHHHHHHHHHHHHhhccCCCcEEEEeC-----------------------ChhhHHhhCCCCc-
Q psy160 103 ENEFVTVFFYETD-HKDSVKVLERLEKIDGETDNMDITFVKMA-----------------------DPRYARKWGVTKL- 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~-C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-----------------------~~~l~~~~~i~~~- 157 (346)
.+++++|.||+.| |++|...+|.+.+++++ .+..+..+.+| ...+++.|++...
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 121 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD 121 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence 3578999999999 99999999999999887 44333333332 2468889999877
Q ss_pred --------ceEEEEe-cCC
Q psy160 158 --------PAVVYFR-HRF 167 (346)
Q Consensus 158 --------Ptl~~~~-~g~ 167 (346)
|+.+++. +|+
T Consensus 122 ~~~~g~~~p~~~lid~~G~ 140 (175)
T 1xvq_A 122 GPMAGLLARAIVVIGADGN 140 (175)
T ss_dssp STTTTSBCSEEEEECTTSB
T ss_pred cccCCcccceEEEECCCCe
Confidence 7777775 566
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=53.96 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh----hHHhhCCCCcceEEEE
Q psy160 94 RRMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR----YARKWGVTKLPAVVYF 163 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~----l~~~~~i~~~Ptl~~~ 163 (346)
.+.+++++.+++ ++.|++ +||++|+++.+.+.+.. ..+..+.++ ++. +...+|+.++|+++
T Consensus 7 ~~~~~~~i~~~~--vvvf~~g~~~~~~C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~-- 77 (105)
T 2yan_A 7 EERLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQLY-- 77 (105)
T ss_dssp HHHHHHHHTSSS--EEEEESBCSSSBCTTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--
T ss_pred HHHHHHHhccCC--EEEEEecCCCCCCCccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeEE--
Confidence 356677776554 445777 99999999999998764 235555655 333 56678999999983
Q ss_pred ecCC
Q psy160 164 RHRF 167 (346)
Q Consensus 164 ~~g~ 167 (346)
.+|+
T Consensus 78 i~g~ 81 (105)
T 2yan_A 78 VKGE 81 (105)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 4664
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=58.37 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=57.9
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE----------------------------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK---------------------------------------- 142 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~---------------------------------------- 142 (346)
+.+..++.|+.++|++|+++.+.+.++.+ + .+.+..
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l~~-v---~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~ 88 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKMTD-V---TVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG 88 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTCCS-E---EEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhcCc-e---EEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence 34678999999999999999999876421 1 111110
Q ss_pred --eC-----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhcccc
Q psy160 143 --MA-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 143 --~~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
++ +..+++++||+++||+++ .+|+ .+.|..+.+ .|.+.+.+....
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~--~i~G~~~~~-~l~~~i~~~~~~ 140 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR--TQSGYSPMP-QLEEIIRKNQQE 140 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC--EEESCCCTT-HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE--EeeCCCCHH-HHHHHHHHHHHh
Confidence 00 446788999999999998 5675 467877745 888888776543
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=53.42 Aligned_cols=66 Identities=24% Similarity=0.415 Sum_probs=44.7
Q ss_pred HHHHHHHhccceEEEEEEc-----CCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChh----hhhhCCCccccEEEEEe
Q psy160 200 VMLETMVEETQYLAVYFYK-----LNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ----LAKRYSIKTFPALVYFR 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~-----~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~----~~~~~~i~~~Pti~~~~ 269 (346)
+.++++++.++ ++ .|++ +||++|+.+.+.+.+++- .+....+ .++. +.+.+++.++|++ |.
T Consensus 8 ~~~~~~i~~~~-vv-vf~~g~~~~~~C~~C~~~~~~L~~~~i-----~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i 78 (105)
T 2yan_A 8 ERLKVLTNKAS-VM-LFMKGNKQEAKCGFSKQILEILNSTGV-----EYETFDILEDEEVRQGLKAYSNWPTYPQL--YV 78 (105)
T ss_dssp HHHHHHHTSSS-EE-EEESBCSSSBCTTHHHHHHHHHHHHTC-----CCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred HHHHHHhccCC-EE-EEEecCCCCCCCccHHHHHHHHHHCCC-----CeEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence 45566666554 33 4777 999999999999988742 2334444 3444 4556789999998 56
Q ss_pred CCeEE
Q psy160 270 NGNPL 274 (346)
Q Consensus 270 ~g~~~ 274 (346)
+|+.+
T Consensus 79 ~g~~i 83 (105)
T 2yan_A 79 KGELV 83 (105)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 88753
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=57.95 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=31.1
Q ss_pred ceEEEEEE-cCCChhhHH-HHHHHHHHHhhcCcCce-EEEEE
Q psy160 210 QYLAVYFY-KLNCNICDQ-ILEGLEKVDDECDIYGI-HMVKI 248 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~-~~~~~~~la~~~~~~~i-~~~~i 248 (346)
++++|.|| +.||++|.. ..|.+.++.+++++.++ .++.|
T Consensus 32 k~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~I 73 (167)
T 2wfc_A 32 KKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACM 73 (167)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEE
T ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 46777776 999999999 99999999888864456 66666
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00027 Score=57.82 Aligned_cols=64 Identities=13% Similarity=0.246 Sum_probs=47.5
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C----------------------ChhhHHhhCCCC--
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A----------------------DPRYARKWGVTK-- 156 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~----------------------~~~l~~~~~i~~-- 156 (346)
+++++|.|| +.||+.|...+|.+.++.++++..++.++.+ | ...+++.|++..
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~ 130 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK 130 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence 467788887 9999999999999999999986555555432 2 446777888753
Q ss_pred ----------cceEEEEe-cCC
Q psy160 157 ----------LPAVVYFR-HRF 167 (346)
Q Consensus 157 ----------~Ptl~~~~-~g~ 167 (346)
.|+.+++. +|+
T Consensus 131 ~~~g~~~~~~~p~~~lID~~G~ 152 (179)
T 3ixr_A 131 TMYGRQVIGIERSTFLIGPTHR 152 (179)
T ss_dssp CCC--CEEEECCEEEEECTTSB
T ss_pred cccCcccCCcceEEEEECCCCE
Confidence 47777775 465
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.57 E-value=2.9e-05 Score=55.77 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=40.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhh-CCCCcceEEEEecCC
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKW-GVTKLPAVVYFRHRF 167 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~-~i~~~Ptl~~~~~g~ 167 (346)
-++.|+++||++|+++.+.+++..-. +..+.++ ...+.+.+ ++.++|++.+ +|+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~-----~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~ 64 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVK-----YTDIDASTSLRQEMVQRANGRNTFPQIFI--GDY 64 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCC-----EEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCC-----cEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 37789999999999999999876432 3344444 34577888 9999999843 664
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=7.7e-05 Score=59.75 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=27.2
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.++++++.|| +.||+.|...+|.+.++.++++..++.++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~ 69 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLG 69 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEE
T ss_pred CCCeEEEEecCCCCCCccccchhhcccccccccccCceEee
Confidence 4578889998 999999999999999999888666665554
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=58.84 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=33.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+.++.++.|+++||++|..+.|.+.++.+++.+ ++.|..+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~ 63 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRL 63 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEE
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEE
Confidence 356789999999999999999999999999875 6666533
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=53.84 Aligned_cols=66 Identities=21% Similarity=0.412 Sum_probs=45.2
Q ss_pred HHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcC-----hh----hhhhCCCccccEEEEEeC
Q psy160 200 VMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQD-----PQ----LAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 200 ~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~-----~~----~~~~~~i~~~Pti~~~~~ 270 (346)
+.++++++.++ ++.|+++||++|+.+.+.+.+++-. .....++. ++ +.+..|..++|++ |.+
T Consensus 10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~i~-----~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~ 80 (113)
T 3rhb_A 10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLGVQ-----PLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVC 80 (113)
T ss_dssp HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTTCC-----CEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcCCC-----CeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 34455666655 5669999999999999999887543 33444421 22 4455688999998 568
Q ss_pred CeEE
Q psy160 271 GNPL 274 (346)
Q Consensus 271 g~~~ 274 (346)
|+.+
T Consensus 81 g~~i 84 (113)
T 3rhb_A 81 GKHI 84 (113)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 8754
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=58.60 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=54.5
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEe--C--------------------------ChhhHHhhC
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKM--A--------------------------DPRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~--------------------------~~~l~~~~~ 153 (346)
.+++++|.||+ .||+.|...+|.+.++.++++..++.++.+ | ...+++.||
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg 108 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 108 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence 35788999995 899999999999999988875434444332 2 234566777
Q ss_pred CC------CcceEEEEe-cCC-cceecCCcc---hhHHHHHHHhh
Q psy160 154 VT------KLPAVVYFR-HRF-PSIYRGDLS---EEEEVLQWLIT 187 (346)
Q Consensus 154 i~------~~Ptl~~~~-~g~-~~~y~g~~~---~~~~i~~fi~~ 187 (346)
+. ..|+.+++. +|+ ...+.|... ..+++++.++.
T Consensus 109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~ 153 (186)
T 1n8j_A 109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153 (186)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 76 258888885 455 233444321 13356666554
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.7e-05 Score=55.52 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=45.4
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC------C----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS------D----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEE 71 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~------~----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~ 71 (346)
.|+++||++|+++.+.|+++.-. +..+.++ + .++...+++.+.|++++ +|.. -|..+. +
T Consensus 16 ly~~~~Cp~C~~~~~~L~~~gi~-----~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~~-~ 84 (92)
T 3ic4_A 16 MYGLSTCPHCKRTLEFLKREGVD-----FEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYNE-E 84 (92)
T ss_dssp EEECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCCH-H
T ss_pred EEECCCChHHHHHHHHHHHcCCC-----cEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCCH-H
Confidence 57899999999998888876432 3444554 1 56667899999999877 6643 233333 5
Q ss_pred HHHHHHh
Q psy160 72 KILTWLT 78 (346)
Q Consensus 72 ~i~~~i~ 78 (346)
.|.+++.
T Consensus 85 ~l~~~l~ 91 (92)
T 3ic4_A 85 KLKELIR 91 (92)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777764
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=97.51 E-value=3e-05 Score=62.71 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHhcCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 96 MLDKLLEENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++.++..+++++++.|| +.||++|...+|.+.++.+++++.++.++.
T Consensus 25 ~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~ 72 (164)
T 4gqc_A 25 NLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLA 72 (164)
T ss_dssp EHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEE
T ss_pred EHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEE
Confidence 34556667788888888 999999999889999888888665555554
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=49.10 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=46.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC-----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD-----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
++.|+++||++|+++.+.+.+.. ..+..+.++. ..+.+.+++.++|++. .+|+.+ |.. ++|.
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i---~g~---~~i~ 69 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKG-----VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI---GGY---DDLY 69 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHT-----CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE---ESH---HHHH
T ss_pred EEEEECCCChhHHHHHHHHHHCC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE---eCH---HHHH
Confidence 67899999999999999888753 3355666652 2356789999999984 366422 222 2577
Q ss_pred HHHhhc
Q psy160 183 QWLITQ 188 (346)
Q Consensus 183 ~fi~~~ 188 (346)
+++.+.
T Consensus 70 ~~~~~g 75 (82)
T 1fov_A 70 ALDARG 75 (82)
T ss_dssp HHHHTT
T ss_pred HHHHCC
Confidence 776654
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=97.46 E-value=8.2e-05 Score=60.56 Aligned_cols=62 Identities=10% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHH-HHHHHHHHhhcCcCceE-EEEE--cC----hhhhhhCCCc-ccc
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQI-LEGLEKVDDECDIYGIH-MVKI--QD----PQLAKRYSIK-TFP 263 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~-~~~~~~la~~~~~~~i~-~~~i--~~----~~~~~~~~i~-~~P 263 (346)
+.++++.++.+++.|++.||++|... .|.+.++.++++..++. ++.| +. ..+++++++. .||
T Consensus 37 l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp 107 (171)
T 2pwj_A 37 VNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE 107 (171)
T ss_dssp HHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred HHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence 34444555577888999999999998 99999999888644566 6666 22 3456677763 566
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.6e-05 Score=53.09 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=45.7
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC-----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHH
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD-----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILT 75 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~-----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~ 75 (346)
+.|+++||++|+++.+.+++.. ..+..+.++. .++...+++.+.|++. .+|..+ .| .++|.+
T Consensus 4 ~~y~~~~C~~C~~~~~~l~~~~-----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i--~g----~~~i~~ 70 (82)
T 1fov_A 4 EIYTKETCPYCHRAKALLSSKG-----VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI--GG----YDDLYA 70 (82)
T ss_dssp EEEECSSCHHHHHHHHHHHHHT-----CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE--ES----HHHHHH
T ss_pred EEEECCCChhHHHHHHHHHHCC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE--eC----HHHHHH
Confidence 3688999999999988877642 2234455542 2456789999999984 466542 22 247888
Q ss_pred HHhccC
Q psy160 76 WLTSQD 81 (346)
Q Consensus 76 ~i~~~~ 81 (346)
++.+..
T Consensus 71 ~~~~g~ 76 (82)
T 1fov_A 71 LDARGG 76 (82)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 876543
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=57.52 Aligned_cols=63 Identities=11% Similarity=0.290 Sum_probs=48.2
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------ChhhhhhCCCccc
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------DPQLAKRYSIKTF 262 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------~~~~~~~~~i~~~ 262 (346)
.++++|.||+.| |++|....|.+.++.++ . ++.++.| + +..+++.|++...
T Consensus 44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 120 (175)
T 1xvq_A 44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA 120 (175)
T ss_dssp TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence 568999999999 99999999999999887 3 4555544 1 2457788998876
Q ss_pred ---------cEEEEE-eCCeEE
Q psy160 263 ---------PALVYF-RNGNPL 274 (346)
Q Consensus 263 ---------Pti~~~-~~g~~~ 274 (346)
|+.+++ ++|+.+
T Consensus 121 ~~~~~g~~~p~~~lid~~G~I~ 142 (175)
T 1xvq_A 121 DGPMAGLLARAIVVIGADGNVA 142 (175)
T ss_dssp SSTTTTSBCSEEEEECTTSBEE
T ss_pred ccccCCcccceEEEECCCCeEE
Confidence 777776 577743
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=58.10 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=32.6
Q ss_pred cceEEEEEEcCC-ChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLN-CNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~-c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++| |++|....|.+.++.+++ . ++.++.+
T Consensus 44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~-~~~vv~i 82 (167)
T 2jsy_A 44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G-DVNVYTI 82 (167)
T ss_dssp TSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S-SCEEEEE
T ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C-CCEEEEE
Confidence 568999999999 999999999999999988 3 5666665
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00039 Score=50.99 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=40.1
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH----hh-CCCCcceEEEEecCC
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR----KW-GVTKLPAVVYFRHRF 167 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~----~~-~i~~~Ptl~~~~~g~ 167 (346)
+.-++.|+++||++|++..+.+.+..- .+..+.++ .+.... .. |...+|+++ .+|+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i-----~y~~idI~~~~~~~~~l~~~~~g~~~vP~if--i~g~ 76 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGV-----EFQEYCIDGDNEAREAMAARANGKRSLPQIF--IDDQ 76 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTC-----CCEEEECTTCHHHHHHHHHHTTTCCCSCEEE--ETTE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-----CCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE--ECCE
Confidence 456789999999999999999987643 35556665 334333 33 899999883 4664
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0002 Score=59.73 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=27.0
Q ss_pred CeecCCCChh-hHHHHHHHHHHHhhhcc---cCCeEEE
Q psy160 1 MYINDENCPE-CDDILEELEHIDGDADQ---YGIDMVK 34 (346)
Q Consensus 1 v~Fy~~~C~~-c~~~~~~~~~~a~~~~~---~~i~~~~ 34 (346)
|.|++.||++ |...+|.|.++.+.+.. .++.++.
T Consensus 46 v~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~ 83 (200)
T 2b7k_A 46 IYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83 (200)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEE
Confidence 5799999998 99999999999888743 2555543
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0004 Score=56.74 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=33.6
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....|.+.++.+++++.++.++.|
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~V 91 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGV 91 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457888888 9999999999999999999987656777666
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00028 Score=54.56 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=48.6
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHH-HHHHHHHHhhccCCCcEEEEeCC--------hhhHHhhCCCCcceEEEE
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKV-LERLEKIDGETDNMDITFVKMAD--------PRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~-~~~~~~~a~~~~~~~i~~~~~~~--------~~l~~~~~i~~~Ptl~~~ 163 (346)
..+.+++++...+ ++.|+++||++|++. .+.+.+.... ...+.++.++. ..+.+.+|...+|++ |
T Consensus 26 ~~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--f 99 (129)
T 3ctg_A 26 TVAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--Y 99 (129)
T ss_dssp HHHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred HHHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--E
Confidence 4566777777665 678999999999998 8777765421 12355666652 357888999999996 4
Q ss_pred ecCC
Q psy160 164 RHRF 167 (346)
Q Consensus 164 ~~g~ 167 (346)
.+|+
T Consensus 100 i~g~ 103 (129)
T 3ctg_A 100 INGK 103 (129)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 4664
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00025 Score=60.27 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=55.4
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE--eC-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK--MA-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~-----------------------------~~~l~~ 150 (346)
.+++++|.|| +.||+.|...+|.+.+++++++..++.++. +| ...+++
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 134 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK 134 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence 4578999999 999999999999999998887433333332 22 234677
Q ss_pred hhCC-----CCcceEEEEe-cCCc-ceecCCc---chhHHHHHHHhh
Q psy160 151 KWGV-----TKLPAVVYFR-HRFP-SIYRGDL---SEEEEVLQWLIT 187 (346)
Q Consensus 151 ~~~i-----~~~Ptl~~~~-~g~~-~~y~g~~---~~~~~i~~fi~~ 187 (346)
.|++ ...|+.+++. +|+. ..+.|.. ...+++++.++.
T Consensus 135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~ 181 (221)
T 2c0d_A 135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDS 181 (221)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 7887 3678888885 4552 2233421 123366666654
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=58.55 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=27.7
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....|.+.++.++++..++.++.+
T Consensus 30 Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~v 70 (157)
T 4g2e_A 30 GKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGI 70 (157)
T ss_dssp TSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEE
T ss_pred CCeEEEEecCCCCCCccccchhhcccccccccccCceEeee
Confidence 467888898 9999999999999999988887656666666
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00022 Score=61.70 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHhcCCc-EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE--eC----------------------------Ch
Q psy160 98 DKLLEENEF-VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK--MA----------------------------DP 146 (346)
Q Consensus 98 ~~~~~~~~~-~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~----------------------------~~ 146 (346)
.+++..++. +|+.|++.||+.|...++.+.++++++++.++.++. +| ..
T Consensus 27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~ 106 (249)
T 3a2v_A 27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQG 106 (249)
T ss_dssp HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTS
T ss_pred HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCch
Confidence 344434453 455678999999999999999999998654455443 32 23
Q ss_pred hhHHhhCCC-------CcceEEEEe-cCCc-ceecCC----cchhHHHHHHHhh
Q psy160 147 RYARKWGVT-------KLPAVVYFR-HRFP-SIYRGD----LSEEEEVLQWLIT 187 (346)
Q Consensus 147 ~l~~~~~i~-------~~Ptl~~~~-~g~~-~~y~g~----~~~~~~i~~fi~~ 187 (346)
.+++.||+. .+|+++++. +|+. ..+.|. ++ .++++..+..
T Consensus 107 ~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~-~~Ellr~I~a 159 (249)
T 3a2v_A 107 TVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRL-VDEILRIVKA 159 (249)
T ss_dssp HHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCC-HHHHHHHHHH
T ss_pred HHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccch-hHHHHHHHHH
Confidence 578899997 899988885 4652 222333 23 3467776654
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00026 Score=57.24 Aligned_cols=41 Identities=12% Similarity=0.343 Sum_probs=33.8
Q ss_pred ccceEEEEEEcCCCh-hhHHHHHHHHHHHhhcCcC--ceEEEEE
Q psy160 208 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECDIY--GIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~-~c~~~~~~~~~la~~~~~~--~i~~~~i 248 (346)
..++++|.||++||+ +|....+.+.++.+++... ++.++.|
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~i 75 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEE
Confidence 357899999999999 9999999999998887643 2777766
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00038 Score=59.12 Aligned_cols=65 Identities=17% Similarity=0.358 Sum_probs=48.5
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.|| +.||++|....|.+.++.++++..++.++.| + +..+++.
T Consensus 56 Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 135 (221)
T 2c0d_A 56 QKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKN 135 (221)
T ss_dssp TCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHH
Confidence 468999999 9999999999999999988885435666555 1 1235566
Q ss_pred CCC-----ccccEEEEEe-CCeE
Q psy160 257 YSI-----KTFPALVYFR-NGNP 273 (346)
Q Consensus 257 ~~i-----~~~Pti~~~~-~g~~ 273 (346)
|++ ...|+.+++. +|+.
T Consensus 136 ygv~~~~g~~~P~~~lID~~G~I 158 (221)
T 2c0d_A 136 YNVLYDNSFALRGLFIIDKNGCV 158 (221)
T ss_dssp TTCEETTTEECEEEEEECTTSBE
T ss_pred cCCcccCCCccceEEEECCCCeE
Confidence 777 3679988885 6764
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00061 Score=51.29 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC--------hhhHHhhCCCCcceEEEEec
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD--------PRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~--------~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.+.+++++++++ ++.|+++||++|.+..+.+.+..- ....+.++. ..+.+..|...+|++.+ +
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~i-----~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLGV-----ECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTTC-----CCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcCC-----CcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 466777776655 456999999999999988887532 355566652 23567789999999865 5
Q ss_pred CC
Q psy160 166 RF 167 (346)
Q Consensus 166 g~ 167 (346)
|+
T Consensus 78 g~ 79 (114)
T 3h8q_A 78 KV 79 (114)
T ss_dssp TE
T ss_pred CE
Confidence 64
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00052 Score=49.29 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=39.4
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEEEecCC
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
-++.|+++||++|+++.+.+++.. ..+..+.++ ++ .+.+.+++.++|++ |.+|+
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~ 65 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKG-----AEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSV 65 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTT-----CCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTE
T ss_pred cEEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 378899999999999998887753 335566665 22 35558899999976 34664
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=59.04 Aligned_cols=62 Identities=6% Similarity=0.090 Sum_probs=41.3
Q ss_pred HHHHHhcCCcEEEEEECCCChhHHHH-HHHHHHHHhhccCCCcE-EE--EeCC----hhhHHhhCCC-Ccc
Q psy160 97 LDKLLEENEFVTVFFYETDHKDSVKV-LERLEKIDGETDNMDIT-FV--KMAD----PRYARKWGVT-KLP 158 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~~~~C~~c~~~-~~~~~~~a~~~~~~~i~-~~--~~~~----~~l~~~~~i~-~~P 158 (346)
+.++++.++.+|+.|++.||+.|..- +|.+.+++++++..++. ++ ..|. ...++++++. .||
T Consensus 37 l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp 107 (171)
T 2pwj_A 37 VNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE 107 (171)
T ss_dssp HHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred HHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence 33333333466778899999999998 99999999988544444 44 3442 3355666663 566
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00051 Score=57.81 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=55.8
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.|| +.||++|...+|.+.+++++++..++.++-+ | ...+++
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 126 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 126 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence 3578999999 9999999999999999998885434444322 1 234667
Q ss_pred hhCCC------CcceEEEEe-cCCc-ceecCCcc---hhHHHHHHHhh
Q psy160 151 KWGVT------KLPAVVYFR-HRFP-SIYRGDLS---EEEEVLQWLIT 187 (346)
Q Consensus 151 ~~~i~------~~Ptl~~~~-~g~~-~~y~g~~~---~~~~i~~fi~~ 187 (346)
.|++. ..|+.+++. +|+. ..+.|... ..+++++.+..
T Consensus 127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~ 174 (211)
T 2pn8_A 127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA 174 (211)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78874 578888885 3552 22333321 13356666554
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=97.33 E-value=4.5e-05 Score=61.64 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=37.2
Q ss_pred HHHHHHhccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 201 MLETMVEETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 201 ~~~~~~~~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
++.++....++++|.|| +.||++|....|.+.++.+++++.++.++.+
T Consensus 25 ~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~i 73 (164)
T 4gqc_A 25 NLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAI 73 (164)
T ss_dssp EHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEE
T ss_pred EHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEe
Confidence 34556666778888888 9999999988888888888887656666666
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00017 Score=57.11 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=30.6
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhccC
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQD 81 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~~ 81 (346)
+.+++.++||++.||+++ .+|.. ..|.... +.+.++|.+..
T Consensus 98 ~~~la~~~gI~gtPt~vi-~nG~~--i~G~~~~-~~l~~~i~~~~ 138 (147)
T 3gv1_A 98 TTSLGEQFGFNGTPTLVF-PNGRT--QSGYSPM-PQLEEIIRKNQ 138 (147)
T ss_dssp HHHHHHHTTCCSSCEEEC-TTSCE--EESCCCT-THHHHHHHHTS
T ss_pred HHHHHHHhCCCccCEEEE-ECCEE--eeCCCCH-HHHHHHHHHHH
Confidence 457888999999999988 66653 5676666 47877776543
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00035 Score=56.54 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred cCCcEEEEEE-CCCChhHHH-HHHHHHHHHhhccCCCc-EEEEe--CC----hhhHHhhCCC-Ccc
Q psy160 103 ENEFVTVFFY-ETDHKDSVK-VLERLEKIDGETDNMDI-TFVKM--AD----PRYARKWGVT-KLP 158 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~-~~~~~~~~a~~~~~~~i-~~~~~--~~----~~l~~~~~i~-~~P 158 (346)
.++++++.|| +.||+.|.. -+|.+.+++++++..++ .++-+ |. ...++++++. .+|
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp 95 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQ 95 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceE
Confidence 3466777776 999999999 99999999988854455 55544 32 2345555554 255
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00063 Score=57.27 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=33.5
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....|.+.++.++++..++.++.|
T Consensus 48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~I 88 (211)
T 2pn8_A 48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVAC 88 (211)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 468999999 9999999999999999998886445666655
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00022 Score=58.71 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHhccceEEEEEEcCCChhhHH-HHHHHHHHHhhcCcCceE-EEEE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQ-ILEGLEKVDDECDIYGIH-MVKI 248 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~-~~~~~~~la~~~~~~~i~-~~~i 248 (346)
+.++++.+..+++.|++.||++|.. ..|.+.+++++++..++. ++.|
T Consensus 50 L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~I 98 (184)
T 3uma_A 50 TELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVV 98 (184)
T ss_dssp HHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEE
T ss_pred HHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3443444445555566999999999 799999999988654565 6655
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00078 Score=55.39 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=32.7
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+ .||++|....|.+.++.+++++.++.++.|
T Consensus 30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~I 70 (186)
T 1n8j_A 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSV 70 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688999995 899999999999999988876445666655
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0008 Score=49.57 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=46.2
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC------hhhH----HhhCCCCcceEEEEecCCcceecCC
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD------PRYA----RKWGVTKLPAVVYFRHRFPSIYRGD 174 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------~~l~----~~~~i~~~Ptl~~~~~g~~~~y~g~ 174 (346)
+.-+++|+++||++|++..+.+++.... +..+.++. ..+. +..++.++|++++ +|. .+-|.
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~i~-----y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~--~~igg 91 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTKKLLTDLGVD-----FDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE--KAIVG 91 (103)
T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHTBC-----EEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT--EEEES
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCC-----cEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC--EEEEc
Confidence 4457889999999999999999887543 44455542 1222 2358999999876 331 23344
Q ss_pred cchhHHHHHHH
Q psy160 175 LSEEEEVLQWL 185 (346)
Q Consensus 175 ~~~~~~i~~fi 185 (346)
.+.+ .|.+++
T Consensus 92 ~~~~-~l~~~L 101 (103)
T 3nzn_A 92 FKEK-EIRESL 101 (103)
T ss_dssp CCHH-HHHHHT
T ss_pred CCHH-HHHHHh
Confidence 5533 666654
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00044 Score=56.90 Aligned_cols=52 Identities=10% Similarity=-0.061 Sum_probs=34.4
Q ss_pred CCcE-EEEEECCCChhHHH-HHHHHHHHHhhccCCCcE-EE--EeCC----hhhHHhhCCC
Q psy160 104 NEFV-TVFFYETDHKDSVK-VLERLEKIDGETDNMDIT-FV--KMAD----PRYARKWGVT 155 (346)
Q Consensus 104 ~~~~-lv~F~~~~C~~c~~-~~~~~~~~a~~~~~~~i~-~~--~~~~----~~l~~~~~i~ 155 (346)
++++ |+.|.+.||+.|.. -+|.+.+++++++..++. ++ ..|. ...++++++.
T Consensus 56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~ 116 (184)
T 3uma_A 56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM 116 (184)
T ss_dssp TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence 3444 44555999999999 799999999998554444 44 3342 2344455554
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00094 Score=57.41 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=50.2
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE--c-----------------------------Chhhhhh
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI--Q-----------------------------DPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~-----------------------------~~~~~~~ 256 (346)
.++++|.||+ .||++|....|.+.++.+++++.++.++.| + +..+++.
T Consensus 77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ 156 (240)
T 3qpm_A 77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKD 156 (240)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHH
Confidence 4688999999 999999999999999999987556776666 1 1245667
Q ss_pred CCCc------cccEEEEEe-CCeE
Q psy160 257 YSIK------TFPALVYFR-NGNP 273 (346)
Q Consensus 257 ~~i~------~~Pti~~~~-~g~~ 273 (346)
|++. ..|+.+++. +|+.
T Consensus 157 ygv~~~~~g~~~p~~flID~~G~I 180 (240)
T 3qpm_A 157 YGVYLEDQGHTLRGLFIIDEKGVL 180 (240)
T ss_dssp TTCEETTTTEECEEEEEECTTSBE
T ss_pred hCCccccCCCccceEEEEcCCCeE
Confidence 7776 579988884 6663
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00073 Score=49.51 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=40.4
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhh----hhhC-CCccccEEEEEeCCeEE
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQL----AKRY-SIKTFPALVYFRNGNPL 274 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~----~~~~-~i~~~Pti~~~~~g~~~ 274 (346)
+.-++.|+++||++|+++.+.+.+++-. +....+ .+++. .+.. +..++|++ |.+|+.+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~-----y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~i 78 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVE-----FQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHI 78 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCC-----CEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCC-----CEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEE
Confidence 4456779999999999999999987533 334455 33333 3344 88999987 5678644
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00052 Score=55.47 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE--eCCh----hhHHhhCCCCcc
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK--MADP----RYARKWGVTKLP 158 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~~----~l~~~~~i~~~P 158 (346)
+++++|.|| +.||+.|....|.+.++.+++ .++.++. .|.+ +.++++++..+|
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~ 106 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRFCESFNIQNVT 106 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHHHHHTTCCSSE
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHHHHHcCCCCeE
Confidence 467888898 799999999999999999887 3344443 3422 345566664455
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00082 Score=51.85 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHHHHHHHhccceEEEEEEcCCChhhHHH-HHHHHHHHhhcCcCceEEEEEc-C-------hhhhhhCCCccccEEEEEe
Q psy160 199 RVMLETMVEETQYLAVYFYKLNCNICDQI-LEGLEKVDDECDIYGIHMVKIQ-D-------PQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~lv~F~~~~c~~c~~~-~~~~~~la~~~~~~~i~~~~i~-~-------~~~~~~~~i~~~Pti~~~~ 269 (346)
.+.+++++...+ ++.|+++||++|..+ .+.+.+++... ..+.+..++ + ..+.+.+|..++|++ |.
T Consensus 27 ~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~~--i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi 100 (129)
T 3ctg_A 27 VAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVPK--SKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YI 100 (129)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCCG--GGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred HHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCccC--CCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EE
Confidence 345555665554 567899999999999 88888775321 245566662 2 357778899999995 66
Q ss_pred CCeEE
Q psy160 270 NGNPL 274 (346)
Q Consensus 270 ~g~~~ 274 (346)
+|+.+
T Consensus 101 ~g~~i 105 (129)
T 3ctg_A 101 NGKHI 105 (129)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 78754
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0014 Score=56.25 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=49.5
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEe--C-----------------------------ChhhHH
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKM--A-----------------------------DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--~-----------------------------~~~l~~ 150 (346)
.+++++|.||+ .||+.|...+|.+.+++++++..++.++.+ | ...+++
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~ 155 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK 155 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence 45788999998 999999999999999999986545544432 2 235777
Q ss_pred hhCCC------CcceEEEEe-cCC
Q psy160 151 KWGVT------KLPAVVYFR-HRF 167 (346)
Q Consensus 151 ~~~i~------~~Ptl~~~~-~g~ 167 (346)
.||+. ..|+.+++. +|+
T Consensus 156 ~ygv~~~~~g~~~p~~flID~~G~ 179 (240)
T 3qpm_A 156 DYGVYLEDQGHTLRGLFIIDEKGV 179 (240)
T ss_dssp HTTCEETTTTEECEEEEEECTTSB
T ss_pred HhCCccccCCCccceEEEEcCCCe
Confidence 88887 679888885 455
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00057 Score=54.80 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=38.0
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEE--eCC----hhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVK--MAD----PRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~--~~~----~~l~~~~~i~~~P 158 (346)
.+++++|.||+ .||++|...+|.+.++.+++ .++.++. .|. ...++++++..+|
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~~~~~~~~~~~ 101 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRWCGAEGLDNAI 101 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHHHHHHTCTTSE
T ss_pred CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHHHHhcCCCCcE
Confidence 45688999985 99999999999999999887 3344444 342 2245566664455
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00043 Score=55.54 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=30.0
Q ss_pred cCCcEEEEEE-CCCChhHH-HHHHHHHHHHhhccCCCcE
Q psy160 103 ENEFVTVFFY-ETDHKDSV-KVLERLEKIDGETDNMDIT 139 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~-~~~~~~~~~a~~~~~~~i~ 139 (346)
.++++++.|| +.||+.|. .-.|.+.+++++++..++.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~ 72 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVT 72 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567888898 89999999 8999999999888433344
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0017 Score=52.59 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
.+..++.|+.++|++|..+.+.+.++.+.+
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 56 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQS 56 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHH
Confidence 356799999999999999999888877666
|
| >3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0036 Score=49.37 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=74.8
Q ss_pred hhccccCcEEEccHHHHHHHHhccceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEEcC--h---hhhhhCCC
Q psy160 186 ITQKTEDRIELITRVMLETMVEETQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKIQD--P---QLAKRYSI 259 (346)
Q Consensus 186 ~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~--~---~~~~~~~i 259 (346)
.++..| .|..+|.++...+..+.-+..++++.. .-..-..+.+.++++|+.+++ ++.|+.++. . ...+.||+
T Consensus 9 ~~~~~P-LV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg-ki~Fv~vd~~~~~~~~~l~~fGl 86 (147)
T 3bj5_A 9 KHNQLP-LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFAFIDSDHTDNQRILEFFGL 86 (147)
T ss_dssp -------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT-TCEEEEECTTCGGGHHHHHHTTC
T ss_pred hhccCC-eeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC-ceEEEEEecchHhHHHHHHHcCC
Confidence 334444 777999999988887766655554443 333356788999999999997 899998833 2 36688999
Q ss_pred cc--ccEEEEEeC-CeEEEee---cCccccccchhhhhhhccC-CCCCCcccCCCCCC
Q psy160 260 KT--FPALVYFRN-GNPLIFE---GENKILKGTYIGTYISTKA-FSLIPFCFSEKHPG 310 (346)
Q Consensus 260 ~~--~Pti~~~~~-g~~~~y~---g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ 310 (346)
+. .|+++++.. +....|. +..+. ..|..|++.-. ..+-|.+-||..|+
T Consensus 87 ~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~---~~i~~Fv~d~l~GkL~p~~KSEpiPe 141 (147)
T 3bj5_A 87 KKEECPAVRLITLEEEMTKYKPESEELTA---ERITEFCHRFLEGKIKPHLMSQELPE 141 (147)
T ss_dssp CGGGCSEEEEEECSSSCEEECCSCCCCCH---HHHHHHHHHHHTTCSCEEECCSCCCG
T ss_pred CcccCCEEEEEecccccccCCCCcccCCH---HHHHHHHHHHHcCCccccccCCCCCC
Confidence 85 899999874 3222342 44432 22666666532 23335555555443
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00044 Score=55.48 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=37.7
Q ss_pred cceEEEEEE-cCCChhhH-HHHHHHHHHHhhcCcCceE-EEEE--cC----hhhhhhCCCc
Q psy160 209 TQYLAVYFY-KLNCNICD-QILEGLEKVDDECDIYGIH-MVKI--QD----PQLAKRYSIK 260 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~-~~~~~~~~la~~~~~~~i~-~~~i--~~----~~~~~~~~i~ 260 (346)
.++++|.|| +.||++|. ...|.+.++.+++++.++. ++.| +. ..+++++++.
T Consensus 35 gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~ 95 (162)
T 1tp9_A 35 GKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPEN 95 (162)
T ss_dssp TSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTC
T ss_pred CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCC
Confidence 467889999 89999999 7899999999888644566 6665 22 2345555554
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00052 Score=59.28 Aligned_cols=71 Identities=10% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHHHhccc-eEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--c----------------------------Ch
Q psy160 203 ETMVEETQ-YLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--Q----------------------------DP 251 (346)
Q Consensus 203 ~~~~~~~~-~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~----------------------------~~ 251 (346)
.+++...+ .+++.|+++||+.|....+.+.++.++++..++.++.+ + +.
T Consensus 27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~ 106 (249)
T 3a2v_A 27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQG 106 (249)
T ss_dssp HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTS
T ss_pred HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCch
Confidence 34442334 45667889999999999999999999987556777766 1 23
Q ss_pred hhhhhCCCc-------cccEEEEEe-CCeE
Q psy160 252 QLAKRYSIK-------TFPALVYFR-NGNP 273 (346)
Q Consensus 252 ~~~~~~~i~-------~~Pti~~~~-~g~~ 273 (346)
.+++.|++. ++|+++++. +|+.
T Consensus 107 ~ia~~ygv~~~~~g~~~~p~~fIID~dG~I 136 (249)
T 3a2v_A 107 TVARRLGLLHAESATHTVRGVFIVDARGVI 136 (249)
T ss_dssp HHHHHHTCCCTTCSSSCCEEEEEECTTSBE
T ss_pred HHHHHhCCccccCCCcccceEEEECCCCeE
Confidence 467788886 899988884 6763
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=47.21 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=45.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---C----hhhHHhhCC-----CCcceEEEEecCCcceecCC
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---D----PRYARKWGV-----TKLPAVVYFRHRFPSIYRGD 174 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~----~~l~~~~~i-----~~~Ptl~~~~~g~~~~y~g~ 174 (346)
.++.|+++||++|++....+.+... .+.+..+| . .++.+.+|. .++|++.+ +|+. -|.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~---i~g 74 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNI-----AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEH---IGG 74 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTC-----CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEE---EES
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCC-----CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEE---EeC
Confidence 4788999999999999888876542 35556555 1 347777888 99999964 6642 233
Q ss_pred cchhHHHHHHHhh
Q psy160 175 LSEEEEVLQWLIT 187 (346)
Q Consensus 175 ~~~~~~i~~fi~~ 187 (346)
.. ++.+++.+
T Consensus 75 ~~---~i~~~~~~ 84 (89)
T 3msz_A 75 FT---ELKANADK 84 (89)
T ss_dssp HH---HHHHTHHH
T ss_pred hH---HHHHHHHH
Confidence 22 45555544
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00094 Score=53.93 Aligned_cols=53 Identities=8% Similarity=0.249 Sum_probs=39.6
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cC----hhhhhhCCCcccc
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI--QD----PQLAKRYSIKTFP 263 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~----~~~~~~~~i~~~P 263 (346)
.++++|.|| +.||++|....|.+.++.+++ . ++.++.| +. ..+++++++..+|
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~ 106 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-E-GVDVTVVSMDLPFAQKRFCESFNIQNVT 106 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESSCHHHHHHHHHHTTCCSSE
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C-CceEEEEeCCCHHHHHHHHHHcCCCCeE
Confidence 468899998 799999999999999999888 3 6777776 22 2345566654344
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0015 Score=49.05 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=44.9
Q ss_pred HHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc---C-----hhhhhhCCCccccEEEEEeC
Q psy160 199 RVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ---D-----PQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 199 ~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~---~-----~~~~~~~~i~~~Pti~~~~~ 270 (346)
.+.+++++++++ ++.|.++||++|..+.+.+.++.-. .....++ + ..+.+..|..++|++.+ +
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~i~-----~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLGVE-----CNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTTCC-----CEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcCCC-----cEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 345666666554 3458999999999999999887432 3344442 2 22456678888999854 7
Q ss_pred CeEE
Q psy160 271 GNPL 274 (346)
Q Consensus 271 g~~~ 274 (346)
|+.+
T Consensus 78 g~~i 81 (114)
T 3h8q_A 78 KVHV 81 (114)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 8644
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00092 Score=53.54 Aligned_cols=38 Identities=5% Similarity=0.072 Sum_probs=32.2
Q ss_pred cceEEEEEEc-CCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYK-LNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~-~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||+ .||++|....|.+.++.+++ . ++.++.|
T Consensus 42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~-~v~vv~i 80 (163)
T 1psq_A 42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D-NTVVLTV 80 (163)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEE
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CcEEEEE
Confidence 4688999995 99999999999999999888 3 6777666
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0031 Score=50.86 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=31.0
Q ss_pred CCcEEEEEECCCCh-hHHHHHHHHHHHHhhccC--CCcEEE
Q psy160 104 NEFVTVFFYETDHK-DSVKVLERLEKIDGETDN--MDITFV 141 (346)
Q Consensus 104 ~~~~lv~F~~~~C~-~c~~~~~~~~~~a~~~~~--~~i~~~ 141 (346)
+++++|.|+++||+ .|...++.+.++.+++.. .++.++
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv 68 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVI 68 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEE
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEE
Confidence 67899999999997 699999999999998842 334444
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=46.23 Aligned_cols=55 Identities=16% Similarity=0.395 Sum_probs=38.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cCh----hhhhhCCCccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDP----QLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~----~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
++.|+++||++|+.+.+.+.+.. ..+....+ .++ ++.+.+++.++|++ +.+|+.+
T Consensus 8 v~ly~~~~C~~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i 67 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKALLARKG-----AEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV 67 (92)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 66799999999999999888763 23444555 233 34457889999975 5577643
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0005 Score=56.00 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHhccceEEEEEEcCCChhhH-HHHHHHHHHHhhcCcCceEEEE-E--cC----hhhhhhCCCc-ccc
Q psy160 202 LETMVEETQYLAVYFYKLNCNICD-QILEGLEKVDDECDIYGIHMVK-I--QD----PQLAKRYSIK-TFP 263 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~-~~~~~~~~la~~~~~~~i~~~~-i--~~----~~~~~~~~i~-~~P 263 (346)
+.++++.+..+++.|++.||++|. ...|.+.+++++++..++.++. + +. ..++++.++. .||
T Consensus 37 L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp 107 (173)
T 3mng_A 37 LAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVR 107 (173)
T ss_dssp HHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCE
T ss_pred hHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceE
Confidence 344334333444444599999999 4889999999998754565553 4 22 3455566654 354
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00072 Score=54.35 Aligned_cols=38 Identities=5% Similarity=0.236 Sum_probs=32.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....|.+.++.+++ . ++.++.|
T Consensus 43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~-~v~vv~I 81 (165)
T 1q98_A 43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S-NTIVLCI 81 (165)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CCEEEEE
Confidence 468899998 799999999999999999888 3 6777666
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0012 Score=53.14 Aligned_cols=55 Identities=5% Similarity=0.010 Sum_probs=36.6
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----hhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~l~~~~~i~~~P 158 (346)
.+++++|.|| +.||++|...+|.+.+++++ ++..+..+..|. ...++++++..+|
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 104 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVI 104 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCE
T ss_pred CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceE
Confidence 3577888888 78999999999999999887 433333333342 2345555554444
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00076 Score=56.94 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=34.4
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.|||+||++|. ..|.++++.+++.+.++.++.+
T Consensus 55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgv 94 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGF 94 (215)
T ss_dssp TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEE
Confidence 357999999999999998 7899999999997656777776
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=48.08 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Ch----hhHHhhCCCCcceEEEEe
Q psy160 95 RMLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-DP----RYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~----~l~~~~~i~~~Ptl~~~~ 164 (346)
+.+++++.+++ ++.|+. +||++|++..+.+.+.. ..+..+.++ ++ .+.+..|...+|+| |.
T Consensus 6 ~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--fi 76 (109)
T 1wik_A 6 SGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKTFSNWPTYPQL--YV 76 (109)
T ss_dssp CCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHTC-----SCEEEEESSSCHHHHHHHHHHHSCCSSCEE--EC
T ss_pred HHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHhCCCCCCEE--EE
Confidence 44677776654 556777 99999999998887652 234455555 33 35566789999985 45
Q ss_pred cCC
Q psy160 165 HRF 167 (346)
Q Consensus 165 ~g~ 167 (346)
+|+
T Consensus 77 ~g~ 79 (109)
T 1wik_A 77 RGD 79 (109)
T ss_dssp SSS
T ss_pred CCE
Confidence 665
|
| >3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.003 Score=48.46 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCC----hh----hHHhhCCCCcceEEEEec
Q psy160 94 RRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMAD----PR----YARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 94 ~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~----~~----l~~~~~i~~~Ptl~~~~~ 165 (346)
.+++++++..++ ++.|+.+||++|.+....|.+... + +.....+.++. .. +.+..|...+|++++ +
T Consensus 4 ~~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~~-~-~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~ 77 (127)
T 3l4n_A 4 QKEYSLILDLSP--IIIFSKSTCSYSKGMKELLENEYQ-F-IPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--N 77 (127)
T ss_dssp HHHHHHHHTSCS--EEEEECTTCHHHHHHHHHHHHHEE-E-ESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHHccCC--EEEEEcCCCccHHHHHHHHHHhcc-c-CCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--C
Confidence 467888877665 789999999999999988877421 1 22356666651 11 334568899999854 5
Q ss_pred CC
Q psy160 166 RF 167 (346)
Q Consensus 166 g~ 167 (346)
|+
T Consensus 78 G~ 79 (127)
T 3l4n_A 78 GV 79 (127)
T ss_dssp TE
T ss_pred CE
Confidence 54
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=53.92 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=35.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..+++++.|+++||++|..+.|.+.++.+.+.+ ++.+..+
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~ 63 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQV 63 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEE
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEE
Confidence 356889999999999999999999999999876 6777766
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00045 Score=55.59 Aligned_cols=39 Identities=3% Similarity=0.088 Sum_probs=30.7
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM 143 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~ 143 (346)
.+++++|.|| +.||+.|...+|.+.++.+++ .++.++.+
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~I 81 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCI 81 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEE
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEE
Confidence 3567889998 799999999999999999887 33444433
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=55.82 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=33.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.||++||++| ...|.+.++.+++++.++.++.+
T Consensus 38 GKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgv 76 (207)
T 2r37_A 38 GKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGF 76 (207)
T ss_dssp TSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEE
Confidence 4799999999999999 67899999999997656777776
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00032 Score=51.74 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=41.5
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCC------hHHH----HhcCCCCCCeEEEEeCC-ceeeecCCCCC
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKISD------TEAA----AKYNIINLPSLVYFRKQ-VPLLYDGDLFD 69 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~------~~~c----~~~~i~~~Ptl~~f~~~-~~~~y~G~~~~ 69 (346)
+.|+++||++|+++.+.|++..-.+ ..+.++. .++. ..+++.+.|++++ ++ .. -|..+.
T Consensus 25 ~ly~~~~Cp~C~~ak~~L~~~~i~y-----~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~~---igg~~~ 94 (103)
T 3nzn_A 25 IMYGLSTCVWCKKTKKLLTDLGVDF-----DYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEKA---IVGFKE 94 (103)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTBCE-----EEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTEE---EESCCH
T ss_pred EEEcCCCCchHHHHHHHHHHcCCCc-----EEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCEE---EEcCCH
Confidence 3688999999999998888764332 3344431 1232 3468999999776 33 32 344444
Q ss_pred HHHHHHHH
Q psy160 70 EEKILTWL 77 (346)
Q Consensus 70 ~~~i~~~i 77 (346)
+.|.++|
T Consensus 95 -~~l~~~L 101 (103)
T 3nzn_A 95 -KEIRESL 101 (103)
T ss_dssp -HHHHHHT
T ss_pred -HHHHHHh
Confidence 4666654
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0044 Score=50.32 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=27.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
++++.+|.|+.-.|+||+++.+.+.++.+.+
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~ 50 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQL 50 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCHhHHHHhHHHHHHHhhc
Confidence 3467899999999999999999998888776
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.004 Score=44.79 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=45.1
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHH---h--hCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYAR---K--WGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~---~--~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
.++.|.++||++|.+....+.+. +..+..++++ +++..+ + -|.+.+|+|++ .+|.. ..|. + .++
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~--l~~~-~-~~e 74 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGST--LTNP-S-ADE 74 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCE--EESC-C-HHH
T ss_pred cEEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEE--EeCC-C-HHH
Confidence 47889999999999988777653 3335555665 333332 2 27889999865 45542 2232 2 236
Q ss_pred HHHHHhhc
Q psy160 181 VLQWLITQ 188 (346)
Q Consensus 181 i~~fi~~~ 188 (346)
|.+++.+.
T Consensus 75 l~~~L~el 82 (92)
T 2lqo_A 75 VKAKLVKI 82 (92)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0035 Score=52.14 Aligned_cols=38 Identities=8% Similarity=0.306 Sum_probs=31.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....+.+.++.++++ ++.++.|
T Consensus 78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~--~v~vv~I 116 (200)
T 3zrd_A 78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCI 116 (200)
T ss_dssp TSEEEEEECSCCCCSCCCHHHHHHHHHHHTST--TEEEEEE
T ss_pred CCcEEEEEECCCCCchhHHHHHHHHHHHHHhC--CCEEEEE
Confidence 468889998 6799999999999999999883 5666666
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00093 Score=54.37 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=37.6
Q ss_pred CCcEEEEEE-CCCChhHH-HHHHHHHHHHhhccCCCcEE---EEeCC----hhhHHhhCCC-Ccc
Q psy160 104 NEFVTVFFY-ETDHKDSV-KVLERLEKIDGETDNMDITF---VKMAD----PRYARKWGVT-KLP 158 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~-~~~~~~~~~a~~~~~~~i~~---~~~~~----~~l~~~~~i~-~~P 158 (346)
++++++.|| +.||+.|. .-+|.+.+++++++..++.+ +..|. ...++++++. .||
T Consensus 43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp 107 (173)
T 3mng_A 43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVR 107 (173)
T ss_dssp TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCE
T ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceE
Confidence 455555555 99999999 48999999999986555443 44453 3455666765 455
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=45.80 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=39.8
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cC----hhhhhhCCC-----ccccEEEEEeCCeEE
Q psy160 212 LAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QD----PQLAKRYSI-----KTFPALVYFRNGNPL 274 (346)
Q Consensus 212 ~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~----~~~~~~~~i-----~~~Pti~~~~~g~~~ 274 (346)
.++.|+++||++|+.+...+.+++-. +.+..+ .+ .++.+..+. .++|++.+ +|+.+
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~-----~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i 72 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIA-----FDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI 72 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCC-----CEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCC-----ceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE
Confidence 36778899999999999988876532 334444 11 356777787 89999854 77644
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=52.91 Aligned_cols=80 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--------------------------------------
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------------------------------------- 144 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------------------------------------- 144 (346)
+.++.++.|+++||++|..+.|.+.++.+.+.. ++.+..+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~ 99 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQK 99 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhC
Q ss_pred ---------------------------------------ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 145 ---------------------------------------DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 145 ---------------------------------------~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
+..+++++||.+.||+++ +......|..+.+ .+.+.+
T Consensus 100 ~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi---ng~~~~~g~~~~~-~l~~~i 175 (195)
T 2znm_A 100 IRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV---GGKYRVIFNNGFD-GGVHTI 175 (195)
T ss_dssp SCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE---TTTEEECCCSHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE---CCEEEEcCCCCHH-HHHHHH
Q ss_pred hh
Q psy160 186 IT 187 (346)
Q Consensus 186 ~~ 187 (346)
..
T Consensus 176 ~~ 177 (195)
T 2znm_A 176 KE 177 (195)
T ss_dssp HH
T ss_pred HH
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=50.60 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=29.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....|.+.++.++ + ++.++.+
T Consensus 46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~--~~~vv~i 83 (166)
T 3p7x_A 46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-E--EGIVLTI 83 (166)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T--TSEEEEE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHHhhc-C--CCEEEEE
Confidence 467888888 78999999999999999877 3 4555544
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=53.51 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.+++.+|.|+++||+||+++.|.+.++.+.+.+ ++.|..+.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p 63 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEH 63 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEE
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEec
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=96.74 E-value=0.002 Score=55.81 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=33.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||++|....+.+.++.+++++.++.++.|
T Consensus 91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~I 131 (254)
T 3tjj_A 91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVAC 131 (254)
T ss_dssp TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 468889998 9999999999999999999987556776666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 346 | ||||
| d1iloa_ | 77 | c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Meth | 0.002 | |
| d2trcp_ | 217 | c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [ | 0.003 | |
| d1meka_ | 120 | c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu | 0.004 |
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 34.2 bits (79), Expect = 0.002
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 8 CPECDDILEELEHIDGDADQYGID--MVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDG 65
C C + + + GID KI + + + + LP L + G
Sbjct: 11 CANCQMLEKNAREA---VKELGIDAEFEKIKEMDQILEAGLTALPGLAVDGELK---IMG 64
Query: 66 DLFDEEKILTWLT 78
+ +E+I L+
Sbjct: 65 RVASKEEIKKILS 77
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.003
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 207 EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALV 266
++ + V Y+ CD + LE + E + ++ + R+S P L+
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLL 177
Query: 267 YFRNGNPL 274
++ G +
Sbjct: 178 VYKGGELI 185
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (78), Expect = 0.004
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 189 KTEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248
+ ED + ++ + + +YL V FY C C + K + G +
Sbjct: 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63
Query: 249 -----QDPQLAKRYSIKTFPALVYFRNGNP 273
++ LA++Y ++ +P + +FRNG+
Sbjct: 64 KVDATEESDLAQQYGVRGYPTIKFFRNGDT 93
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.87 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.85 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.84 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.82 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.81 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.8 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.8 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.8 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.79 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.79 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.79 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.78 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.78 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.77 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.77 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.75 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.74 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.74 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.74 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.73 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.73 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.72 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 99.71 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.71 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.7 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.7 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.7 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.69 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.69 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.69 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.69 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.68 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.68 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.68 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.67 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.67 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.67 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.67 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.65 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.65 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.64 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.63 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.61 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.61 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.59 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.58 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.57 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 99.55 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.54 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.51 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.51 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.51 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.51 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.5 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.49 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.48 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.46 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.43 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.34 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.16 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.11 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.0 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 98.99 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 98.98 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 98.92 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 98.91 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 98.9 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 98.86 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 98.81 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.79 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 98.76 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 98.76 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 98.75 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 98.75 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 98.74 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 98.74 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.74 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 98.73 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 98.72 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 98.71 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.71 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.69 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 98.69 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 98.64 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 98.63 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 98.61 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.61 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.59 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 98.58 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.47 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.32 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.31 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.31 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 98.2 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 98.14 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 97.99 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.95 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 97.81 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 97.78 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 97.73 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 97.58 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 97.57 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 97.56 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 97.56 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.51 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 97.5 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.36 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 97.36 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 97.32 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.31 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.27 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.22 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.19 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 97.03 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 97.0 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.99 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 96.95 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 96.69 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.65 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 96.62 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.61 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 96.53 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.44 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 96.43 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 96.43 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.4 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 96.39 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 96.36 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 96.33 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 96.28 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.25 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.24 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 96.23 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 96.07 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 95.98 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.96 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 95.96 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 95.93 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 95.78 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 95.71 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.62 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 95.61 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 95.61 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 95.59 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 95.44 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 95.41 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.29 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.26 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 95.25 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.16 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 95.12 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 95.1 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 94.93 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 94.77 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 94.71 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 94.52 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 94.19 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.12 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 94.01 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 93.74 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 93.43 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 93.16 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 92.9 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 92.84 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 92.76 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 92.25 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 91.7 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 91.69 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 91.46 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 91.37 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 91.17 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 90.77 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 89.87 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 89.36 | |
| d1hyua3 | 102 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 85.79 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 85.09 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 83.41 |
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5e-22 Score=152.51 Aligned_cols=105 Identities=12% Similarity=0.266 Sum_probs=93.2
Q ss_pred cCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 86 KNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
.+.|.+|+.++|++++++++.|+|.||+|||++|+++.|.|+++++.+.+.++.++.+| +.++|.+|+|.++||+++
T Consensus 9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~ 88 (119)
T d2b5ea4 9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKI 88 (119)
T ss_dssp TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred CCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEE
Confidence 44788999999999999999999999999999999999999999999865568888876 789999999999999999
Q ss_pred EecCC---cceecCCcchhHHHHHHHhhcccc
Q psy160 163 FRHRF---PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 163 ~~~g~---~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
|++|+ ...|.|.++. ++|++|++++..|
T Consensus 89 f~~g~~~~~~~y~g~~~~-~~l~~fi~k~~~P 119 (119)
T d2b5ea4 89 FKNSDVNNSIDYEGPRTA-EAIVQFMIKQSQP 119 (119)
T ss_dssp EETTCTTCEEECCSCCSH-HHHHHHHHHHTSC
T ss_pred EECCEEeeeEEecCCCCH-HHHHHHHHHhhCC
Confidence 99886 3468999885 4999999987654
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.85 E-value=1.7e-21 Score=150.63 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=90.7
Q ss_pred ccCceeecCHHHHHHHHhcCCcEEEEEECCCChhH------HHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCC
Q psy160 85 IKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDS------VKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVT 155 (346)
Q Consensus 85 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c------~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~ 155 (346)
+.+.|.+||++||++++++++.++|+||+|||+|| ..+.+.++.+|+.+++.++.++++| ++++|++|+|+
T Consensus 9 ~~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~ 88 (124)
T d1a8ya1 9 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT 88 (124)
T ss_dssp CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCC
T ss_pred CCCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccc
Confidence 34579999999999999999999999999999974 4555566667776666668899887 88999999999
Q ss_pred CcceEEEEecCCcceecCCcchhHHHHHHHhhcccc
Q psy160 156 KLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 156 ~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+||||++|++|+++.|.|.++.+ +|++|+.+...+
T Consensus 89 ~yPTi~~f~~g~~~~y~G~r~~~-~l~~fi~~~l~~ 123 (124)
T d1a8ya1 89 EEDSIYVFKEDEVIEYDGEFSAD-TLVEFLLDVLED 123 (124)
T ss_dssp STTCEEEEESSSEEECCSCCSHH-HHHHHHHHHHSC
T ss_pred cCCcEEEeccCccEEeeCCCCHH-HHHHHHHHhcCC
Confidence 99999999999999999999854 999999886543
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.5e-21 Score=148.88 Aligned_cols=108 Identities=18% Similarity=0.392 Sum_probs=94.4
Q ss_pred cccCceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccC--CCcEEEEeC---ChhhHHhhCCCCcc
Q psy160 84 EIKNEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDN--MDITFVKMA---DPRYARKWGVTKLP 158 (346)
Q Consensus 84 ~~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~--~~i~~~~~~---~~~l~~~~~i~~~P 158 (346)
...+.|..+|+++|++.+++++.++|.||++||++|+.+.|.|.++++.+.+ ..+.++.+| ++.+|.+|+|.++|
T Consensus 4 ~~~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 83 (120)
T d1meka_ 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP 83 (120)
T ss_dssp CEETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred CCCCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCC
Confidence 3455799999999999999999999999999999999999999999999843 347777776 77899999999999
Q ss_pred eEEEEecCC---cceecCCcchhHHHHHHHhhccccC
Q psy160 159 AVVYFRHRF---PSIYRGDLSEEEEVLQWLITQKTED 192 (346)
Q Consensus 159 tl~~~~~g~---~~~y~g~~~~~~~i~~fi~~~~~~~ 192 (346)
|+++|++|+ +..|.|.++.+ +|++|++++..|.
T Consensus 84 t~~~~~~G~~~~~~~~~g~~~~~-~l~~fi~~~~~p~ 119 (120)
T d1meka_ 84 TIKFFRNGDTASPKEYTAGREAD-DIVNWLKKRTGPA 119 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHH-HHHHHHHTTSCCC
T ss_pred eEEEEECCeEeeeEEecCCCCHH-HHHHHHHHhhCCC
Confidence 999999876 45689998844 9999999998874
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.82 E-value=3.9e-20 Score=139.28 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=86.5
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
..|.++|+++|++.+ +++++++|.||++||++|+.+.|.|++++..+.+. +.++.+| ++.+|++|+|+++||+++
T Consensus 2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~Pt~~~ 80 (108)
T d1thxa_ 2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPNPTTVKKYKVEGVPALRL 80 (108)
T ss_dssp CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCc-ceeceecccccHHHHHHhcccCCCEEEE
Confidence 468999999999855 55689999999999999999999999999988543 6666655 889999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+. .+|.|.++.+ +|.+|++++.
T Consensus 81 ~~~g~~v~~~~G~~~~~-~l~~~i~~~L 107 (108)
T d1thxa_ 81 VKGEQILDSTEGVISKD-KLLSFLDTHL 107 (108)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCHH-HHHHHHHHhc
Confidence 999984 4689998854 8999998753
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=3.8e-20 Score=146.05 Aligned_cols=105 Identities=11% Similarity=0.228 Sum_probs=90.7
Q ss_pred cCceeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhcc--CCCcEEEEeC-ChhhHHhhCCCCcceEE
Q psy160 86 KNEIEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETD--NMDITFVKMA-DPRYARKWGVTKLPAVV 161 (346)
Q Consensus 86 ~~~v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~--~~~i~~~~~~-~~~l~~~~~i~~~Ptl~ 161 (346)
...|.+|+.++|++++. .+++|+|+||+|||++|+++.|.|.++|+.+. ...+.++.+| +..+|.+|+|+++||++
T Consensus 11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Ptl~ 90 (140)
T d2b5ea1 11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV 90 (140)
T ss_dssp SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEE
T ss_pred CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCeEE
Confidence 44799999999999885 45789999999999999999999999999884 3458888887 66799999999999999
Q ss_pred EEecCC---cceecCCcchhHHHHHHHhhcccc
Q psy160 162 YFRHRF---PSIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 162 ~~~~g~---~~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
+|++|+ ++.|.|.++.+ +|.+|+.++...
T Consensus 91 ~f~~g~~~~~~~y~G~~t~~-~l~~fi~~~~~~ 122 (140)
T d2b5ea1 91 LYPGGKKSESVVYQGSRSLD-SLFDFIKENGHF 122 (140)
T ss_dssp EECCTTSCCCCBCCSCCCHH-HHHHHHHHHCTT
T ss_pred EEECCEEcceeEeCCCCCHH-HHHHHHHHcCCC
Confidence 999876 46799998854 999999987544
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=9.5e-20 Score=136.42 Aligned_cols=98 Identities=14% Similarity=0.231 Sum_probs=86.2
Q ss_pred eeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEec
Q psy160 89 IEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~ 165 (346)
...||+++|++.++++++++|.||+|||++|+.+.|.+.+++..+.+ ++.++.+| ++.+|++|+|+++||+++|++
T Consensus 2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~ 80 (105)
T d1nw2a_ 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFKG 80 (105)
T ss_dssp CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence 46789999999999999999999999999999999999999998865 37777765 789999999999999999999
Q ss_pred CC-cceecCCcchhHHHHHHHhhc
Q psy160 166 RF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 166 g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
|+ ..++.|..+.+ .|.+++++.
T Consensus 81 G~~~~~~~G~~~~~-~l~~~i~~~ 103 (105)
T d1nw2a_ 81 GEPVKQLIGYQPKE-QLEAQLADV 103 (105)
T ss_dssp TEEEEEEESCCCHH-HHHHHTTTT
T ss_pred CEEEEEEECCCCHH-HHHHHHHHH
Confidence 98 44689988744 899988764
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.80 E-value=1e-19 Score=135.98 Aligned_cols=98 Identities=15% Similarity=0.265 Sum_probs=83.7
Q ss_pred eeecCHHHHHHHHhc-CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLEE-NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~~-~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
|.++|+++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+.+. +.++.++ ++++|++|+|+++||+++|+
T Consensus 1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~ 79 (104)
T d1fb6a_ 1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79 (104)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCc-cceeEEecccchhhhhhcceeeeeEEEEEE
Confidence 578999999997744 578999999999999999999999999998543 5566554 88999999999999999999
Q ss_pred cCCc-ceecCCcchhHHHHHHHhhc
Q psy160 165 HRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 165 ~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
+|+. .++.|.++.+ .|.+|+++.
T Consensus 80 ~G~~v~~~~G~~~~~-~l~~~i~~~ 103 (104)
T d1fb6a_ 80 NGERKESIIGAVPKS-TLTDSIEKY 103 (104)
T ss_dssp TTEEEEEEEECCCHH-HHHHHHHHH
T ss_pred cCeEEEEEeCCCCHH-HHHHHHHHh
Confidence 9984 4689988844 899998864
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=8.1e-20 Score=137.55 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=85.8
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
+.|.+||+++|++.+ +++++++|.|||+||++|+.+.|.+.+++..+.. ++.++.+| ++.+|.+|+|+++||+++
T Consensus 2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~PT~~~ 80 (108)
T d2trxa_ 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80 (108)
T ss_dssp TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc-ceeeeeccccchhhHHHHhCCCcEEEEEE
Confidence 578999999999855 6678999999999999999999999999988643 36666554 788999999999999999
Q ss_pred EecCC-cceecCCcchhHHHHHHHhhcc
Q psy160 163 FRHRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
|++|+ ..+|.|.++.+ .|.+|++++.
T Consensus 81 ~~~G~~v~~~~G~~~~~-~l~~~i~~~L 107 (108)
T d2trxa_ 81 FKNGEVAATKVGALSKG-QLKEFLDANL 107 (108)
T ss_dssp EETTEEEEEEESCCCHH-HHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCHH-HHHHHHHHhc
Confidence 99998 44699998844 8999998753
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.8e-19 Score=137.98 Aligned_cols=101 Identities=16% Similarity=0.336 Sum_probs=87.3
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
+.|..++.++|++++++++.++|.||++||++|+.+.|.|+++++.+.+.++.++.+ .+.+++++|+|.++||+++|
T Consensus 10 s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f 89 (119)
T d2b5ea4 10 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIF 89 (119)
T ss_dssp SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred CccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEE
Confidence 467789999999999999999999999999999999999999999987546999999 67899999999999999999
Q ss_pred eCCe---EEEeecCccccccchhhhhhhcc
Q psy160 269 RNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 269 ~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
++|+ .+.|.|.++.+ . +..|+...
T Consensus 90 ~~g~~~~~~~y~g~~~~~--~-l~~fi~k~ 116 (119)
T d2b5ea4 90 KNSDVNNSIDYEGPRTAE--A-IVQFMIKQ 116 (119)
T ss_dssp ETTCTTCEEECCSCCSHH--H-HHHHHHHH
T ss_pred ECCEEeeeEEecCCCCHH--H-HHHHHHHh
Confidence 9885 56799988643 3 55665543
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.79 E-value=5.3e-20 Score=140.43 Aligned_cols=102 Identities=11% Similarity=0.236 Sum_probs=86.9
Q ss_pred CceeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC----CcEEEEeCChhhHHhhCCCCcceEE
Q psy160 87 NEIEEVNRRMLDKLL-EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM----DITFVKMADPRYARKWGVTKLPAVV 161 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~----~i~~~~~~~~~l~~~~~i~~~Ptl~ 161 (346)
+.|..|+.+||++++ .++++|+|+||+|||++|+++.|.|+++++.+... .+.+...+...++.+++|+++|||+
T Consensus 2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~ 81 (116)
T d2djja1 2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK 81 (116)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence 479999999999976 56689999999999999999999999999998432 2456666777888899999999999
Q ss_pred EEecCC---cceecCCcchhHHHHHHHhhcc
Q psy160 162 YFRHRF---PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 162 ~~~~g~---~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|++|+ +..|.|.++.+ +|.+||.++.
T Consensus 82 ~f~~g~~~~~~~~~g~~~~~-~l~~fi~~~~ 111 (116)
T d2djja1 82 LYPAGAKGQPVTYSGSRTVE-DLIKFIAENG 111 (116)
T ss_dssp EECSSCTTSCCCCCCCSCHH-HHHHHHHHTS
T ss_pred EEECCccCceEEecCCCCHH-HHHHHHHHcc
Confidence 998875 46799998844 9999999864
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.79 E-value=4.7e-19 Score=133.02 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=83.3
Q ss_pred eeecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 89 IEEVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 89 v~~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
+..+|+++|++.+. ++++++|.||||||++|+.+.|.|.+++..+.+. +.++.+| ++++|++|+|+++||+++|+
T Consensus 3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~ 81 (107)
T d1dbya_ 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDESPNVASEYGIRSIPTIMVFK 81 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhccc-ceEEEEecccchhHHHHhcccceEEEEEEE
Confidence 45689999988764 5578999999999999999999999999887543 5555554 78999999999999999999
Q ss_pred cCC-cceecCCcchhHHHHHHHhhcc
Q psy160 165 HRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 165 ~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+|+ ..+|.|.++.+ +|.+|+++..
T Consensus 82 ~G~~v~~~~G~~~~~-~l~~~i~~~L 106 (107)
T d1dbya_ 82 GGKKCETIIGAVPKA-TIVQTVEKYL 106 (107)
T ss_dssp SSSEEEEEESCCCHH-HHHHHHHHHC
T ss_pred CCeEEEEEeCCCCHH-HHHHHHHHhh
Confidence 998 45689988844 8999998754
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.78 E-value=4.2e-19 Score=132.82 Aligned_cols=95 Identities=17% Similarity=0.402 Sum_probs=83.1
Q ss_pred EEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCC
Q psy160 195 ELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNG 271 (346)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g 271 (346)
..+|.++|+++++++++++|.|||+||++|+.+.|.+.+++.++.+ .+.|+++ .+++++++|+|.++||+++|++|
T Consensus 3 i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G 81 (105)
T d1nw2a_ 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFKGG 81 (105)
T ss_dssp EEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred EEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCCcccHHHCCcceeeEEEEEECC
Confidence 4789999999999999999999999999999999999999999986 7999999 68899999999999999999999
Q ss_pred eEE-EeecCccccccchhhhhhh
Q psy160 272 NPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 272 ~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+.+ ++.|..+.+. +..+++
T Consensus 82 ~~~~~~~G~~~~~~---l~~~i~ 101 (105)
T d1nw2a_ 82 EPVKQLIGYQPKEQ---LEAQLA 101 (105)
T ss_dssp EEEEEEESCCCHHH---HHHHTT
T ss_pred EEEEEEECCCCHHH---HHHHHH
Confidence 865 6788775333 555544
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=2.9e-19 Score=137.40 Aligned_cols=100 Identities=10% Similarity=0.206 Sum_probs=84.6
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhcc--CCCcEEEEeC--------ChhhHHhhCC--C
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETD--NMDITFVKMA--------DPRYARKWGV--T 155 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~--~~~i~~~~~~--------~~~l~~~~~i--~ 155 (346)
.+.+|+++||++++.+++.+||.||||||+||++ |+|.++++.+. ...+.++.+| +.++|.+|+| +
T Consensus 3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~ 80 (122)
T d2c0ga2 3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK 80 (122)
T ss_dssp TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred ceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence 4779999999999999999999999999999994 99999999873 3457777653 5789999998 5
Q ss_pred CcceEEEEecCC----cceecCCcchhHHHHHHHhhccc
Q psy160 156 KLPAVVYFRHRF----PSIYRGDLSEEEEVLQWLITQKT 190 (346)
Q Consensus 156 ~~Ptl~~~~~g~----~~~y~g~~~~~~~i~~fi~~~~~ 190 (346)
++||+++|++|. .+.|.|.++. ++|.+|++++..
T Consensus 81 ~~PTi~~f~~g~~~~~~~~~~g~rt~-~~l~~fv~~~~~ 118 (122)
T d2c0ga2 81 NFPSIFLFKGNADEYVQLPSHVDVTL-DNLKAFVSANTP 118 (122)
T ss_dssp SCCEEEEESSSSSSEEECCTTSCCCH-HHHHHHHHHHSS
T ss_pred CCCcEEEEeCCcccccccccCCCCCH-HHHHHHHHHhcC
Confidence 899999999875 3468899984 499999998753
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.77 E-value=1e-18 Score=131.41 Aligned_cols=97 Identities=22% Similarity=0.373 Sum_probs=83.6
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.|..+|.++|++ +++++++++|.||++||++|+.+.|.|++++..+.+ .+.++.+ ++++++++|+|+++||+++|
T Consensus 3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~ 81 (108)
T d1thxa_ 3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALRLV 81 (108)
T ss_dssp SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC-cceeceecccccHHHHHHhcccCCCEEEEE
Confidence 467899999987 567788999999999999999999999999999986 7888888 68999999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhh
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
++|+.+ +|.|.++.+. +..|++
T Consensus 82 ~~g~~v~~~~G~~~~~~---l~~~i~ 104 (108)
T d1thxa_ 82 KGEQILDSTEGVISKDK---LLSFLD 104 (108)
T ss_dssp ETTEEEEEEESCCCHHH---HHHHHH
T ss_pred ECCEEEEEEeCCCCHHH---HHHHHH
Confidence 999865 6888876433 555554
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.77 E-value=6.9e-19 Score=131.39 Aligned_cols=96 Identities=20% Similarity=0.397 Sum_probs=81.6
Q ss_pred EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|.++|.++|++. ++++++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+ .+++++++|+|+++||+++|+
T Consensus 1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~ 79 (104)
T d1fb6a_ 1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79 (104)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC-ccceeEEecccchhhhhhcceeeeeEEEEEE
Confidence 467899999985 56788999999999999999999999999999986 6788887 788999999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhh
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.+ ++.|.++.+. +..+++
T Consensus 80 ~G~~v~~~~G~~~~~~---l~~~i~ 101 (104)
T d1fb6a_ 80 NGERKESIIGAVPKST---LTDSIE 101 (104)
T ss_dssp TTEEEEEEEECCCHHH---HHHHHH
T ss_pred cCeEEEEEeCCCCHHH---HHHHHH
Confidence 99865 5788875333 555544
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-18 Score=129.23 Aligned_cols=98 Identities=23% Similarity=0.426 Sum_probs=84.0
Q ss_pred cEEEccHHHHHH-HHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEE
Q psy160 193 RIELITRVMLET-MVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYF 268 (346)
Q Consensus 193 ~v~~l~~~~~~~-~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~ 268 (346)
.|.++|.++|++ +++++++++|.|||+||++|+.+.|.+.+++..+.+ ++.++.+ .++.++++|+|+++||+++|
T Consensus 3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~ 81 (108)
T d2trxa_ 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 81 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc-ceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence 577899999987 567889999999999999999999999999998875 7888888 78899999999999999999
Q ss_pred eCCeEE-EeecCccccccchhhhhhhc
Q psy160 269 RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 269 ~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
++|+.+ +|.|.++.+. +..|++.
T Consensus 82 ~~G~~v~~~~G~~~~~~---l~~~i~~ 105 (108)
T d2trxa_ 82 KNGEVAATKVGALSKGQ---LKEFLDA 105 (108)
T ss_dssp ETTEEEEEEESCCCHHH---HHHHHHH
T ss_pred ECCEEEEEEeCCCCHHH---HHHHHHH
Confidence 999855 5888876333 6666543
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.75 E-value=2.6e-18 Score=132.39 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=83.3
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChh------hHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccc
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNI------CDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTF 262 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~------c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~ 262 (346)
+.|..+|.++|++++++++.++|.||+|||++ |..+.+.++.+|+.+++..+.+++| .++++|++|+|+++
T Consensus 11 ~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~y 90 (124)
T d1a8ya1 11 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEE 90 (124)
T ss_dssp CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCST
T ss_pred CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccC
Confidence 45779999999999999999999999999996 4556667777777776656999999 68899999999999
Q ss_pred cEEEEEeCCeEEEeecCccccccchhhhhhh
Q psy160 263 PALVYFRNGNPLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 263 Pti~~~~~g~~~~y~g~~~~~~~~~~~~~i~ 293 (346)
||+++|++|+++.|.|.++.+ . +..|+.
T Consensus 91 PTi~~f~~g~~~~y~G~r~~~--~-l~~fi~ 118 (124)
T d1a8ya1 91 DSIYVFKEDEVIEYDGEFSAD--T-LVEFLL 118 (124)
T ss_dssp TCEEEEESSSEEECCSCCSHH--H-HHHHHH
T ss_pred CcEEEeccCccEEeeCCCCHH--H-HHHHHH
Confidence 999999999999999998743 3 445543
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-18 Score=134.05 Aligned_cols=104 Identities=20% Similarity=0.486 Sum_probs=88.6
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC--ceEEEEE---cChhhhhhCCCccccEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY--GIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~--~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
+.|..++.++|++++++++.++|.||++||++|+.+.|.|.++++.+.+. .+.++.+ .++.++++|+|+++||++
T Consensus 7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 86 (120)
T d1meka_ 7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 86 (120)
T ss_dssp TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEE
T ss_pred CCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEE
Confidence 46778999999999999999999999999999999999999999998642 4788888 577899999999999999
Q ss_pred EEeCCe---EEEeecCccccccchhhhhhhccCCC
Q psy160 267 YFRNGN---PLIFEGENKILKGTYIGTYISTKAFS 298 (346)
Q Consensus 267 ~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~~~ 298 (346)
+|++|+ +..|.|.++.+. +..|+++...|
T Consensus 87 ~~~~G~~~~~~~~~g~~~~~~---l~~fi~~~~~p 118 (120)
T d1meka_ 87 FFRNGDTASPKEYTAGREADD---IVNWLKKRTGP 118 (120)
T ss_dssp EEESSCSSSCEECCCCSSHHH---HHHHHHTTSCC
T ss_pred EEECCeEeeeEEecCCCCHHH---HHHHHHHhhCC
Confidence 999885 467899986433 66777766544
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.74 E-value=4.2e-18 Score=127.71 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=80.8
Q ss_pred EEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 194 IELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 194 v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
+..+|.++|++. ++++++++|.|||+||++|+.+.|.+.+++.++.+ ++.++.+ .+++++++|+|+++||+++|+
T Consensus 3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~ 81 (107)
T d1dbya_ 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc-cceEEEEecccchhHHHHhcccceEEEEEEE
Confidence 346789999885 56788999999999999999999999999999886 7888888 678999999999999999999
Q ss_pred CCeEE-EeecCccccccchhhhhhh
Q psy160 270 NGNPL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 270 ~g~~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
+|+.+ ++.|.++.+. +..+++
T Consensus 82 ~G~~v~~~~G~~~~~~---l~~~i~ 103 (107)
T d1dbya_ 82 GGKKCETIIGAVPKAT---IVQTVE 103 (107)
T ss_dssp SSSEEEEEESCCCHHH---HHHHHH
T ss_pred CCeEEEEEeCCCCHHH---HHHHHH
Confidence 99754 5788876332 555554
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.74 E-value=7.7e-18 Score=127.27 Aligned_cols=89 Identities=17% Similarity=0.381 Sum_probs=79.2
Q ss_pred ccCcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 190 TEDRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
.|+.+...+.++|+++++++++++|.|||+||++|+.+.|.+.++++++. ++.|+.+ ++++++++|+|+++||++
T Consensus 7 ~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~ 84 (113)
T d1r26a_ 7 YPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFI 84 (113)
T ss_dssp CSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred CCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc--cccccccccccchhhHHHccccCCCEEE
Confidence 35667667889999999999999999999999999999999999999986 6888888 788999999999999999
Q ss_pred EEeCCeEE-EeecCc
Q psy160 267 YFRNGNPL-IFEGEN 280 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~ 280 (346)
+|++|+.+ ++.|..
T Consensus 85 ~~~~G~~v~~~~G~~ 99 (113)
T d1r26a_ 85 IARSGKMLGHVIGAN 99 (113)
T ss_dssp EEETTEEEEEEESSC
T ss_pred EEECCEEEEEEeCCC
Confidence 99999875 467743
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.73 E-value=9.4e-18 Score=126.63 Aligned_cols=98 Identities=14% Similarity=0.256 Sum_probs=83.2
Q ss_pred CceeecCHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceE
Q psy160 87 NEIEEVNRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAV 160 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl 160 (346)
+.+.++|.++|++++.. +++++|.||++||++|+.+.|.|+++++++.+ +.++.+| +++++++|+|+++||+
T Consensus 6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~~~~~V~~~Pt~ 83 (112)
T d1f9ma_ 6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPTF 83 (112)
T ss_dssp TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccccchhhHhheeeccCCEE
Confidence 47999999999999865 36899999999999999999999999999864 5566553 5789999999999999
Q ss_pred EEEecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 161 VYFRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 161 ~~~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|++|+. .++.|... + .+.++++..
T Consensus 84 ~~~k~G~~v~~~~G~~~-~-~l~e~i~~~ 110 (112)
T d1f9ma_ 84 KILKENSVVGEVTGAKY-D-KLLEAIQAA 110 (112)
T ss_dssp EEEETTEEEEEEESSCH-H-HHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCH-H-HHHHHHHHc
Confidence 99999984 45888743 4 799998765
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.73 E-value=1.3e-17 Score=124.04 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=80.2
Q ss_pred cCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCc
Q psy160 92 VNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFP 168 (346)
Q Consensus 92 l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~ 168 (346)
.|.++|+++++++++++|.||++||++|+.+.|.++++++.+.+ +.++.+| +++++++|+|+++||+++|++|+.
T Consensus 6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~ 83 (103)
T d1syra_ 6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS 83 (103)
T ss_dssp CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence 36899999999999999999999999999999999999999855 4555554 779999999999999999999984
Q ss_pred -ceecCCcchhHHHHHHHhhc
Q psy160 169 -SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 169 -~~y~g~~~~~~~i~~fi~~~ 188 (346)
.++.|. + .+.|.+|++++
T Consensus 84 v~~~~G~-~-~~~l~~~i~k~ 102 (103)
T d1syra_ 84 VDTLLGA-N-DSALKQLIEKY 102 (103)
T ss_dssp EEEEESC-C-HHHHHHHHHTT
T ss_pred EEEEeCc-C-HHHHHHHHHhh
Confidence 468885 4 34899998875
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.72 E-value=2.9e-17 Score=123.94 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=82.8
Q ss_pred ceeec-CHHHHHHHHh----cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~----~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.|..+ |+++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+ ++.|+.+| ++.++++|+|+++||
T Consensus 3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt 81 (112)
T d1ep7a_ 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc-eEEEEEeeccccccccccccccCCCE
Confidence 56666 6888888774 458999999999999999999999999999864 37787775 789999999999999
Q ss_pred EEEEecCC-cceecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFRHRF-PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~~g~-~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++|++|+ ..++.|. + .++|.+|+.++.
T Consensus 82 ~~~~~~G~~v~~~~G~-~-~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 82 FHVYKDGVKADDLVGA-S-QDKLKALVAKHA 110 (112)
T ss_dssp EEEEETTEEEEEEESC-C-HHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCc-C-HHHHHHHHHHHh
Confidence 99999998 4457785 4 458999998764
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.5e-17 Score=127.65 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=81.2
Q ss_pred CceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCC-CcE-----EEEeC---ChhhHHhhC--CC
Q psy160 87 NEIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNM-DIT-----FVKMA---DPRYARKWG--VT 155 (346)
Q Consensus 87 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~-~i~-----~~~~~---~~~l~~~~~--i~ 155 (346)
..+.+||++||++++.+++.+||+||+|||.+|. .|+|+++|+.+.+. ++. ++.+| ++.+|.+++ |+
T Consensus 4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~ 81 (122)
T d1g7ea_ 4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE 81 (122)
T ss_dssp SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred CceEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence 4688999999999999999999999999998885 37888888888443 232 23334 667998865 77
Q ss_pred CcceEEEEecCC---cceecCCcchhHHHHHHHhhcc
Q psy160 156 KLPAVVYFRHRF---PSIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 156 ~~Ptl~~~~~g~---~~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+||||++|++|. +..|+|.++.+ +|++|++++.
T Consensus 82 ~yPTi~~f~~G~~~~~~~y~G~rt~~-~l~~fi~~~~ 117 (122)
T d1g7ea_ 82 SYPVFYLFRDGDFENPVPYSGAVKVG-AIQRWLKGQG 117 (122)
T ss_dssp SCEEEEEEESSCCCCCEEEESCCCHH-HHHHHHHTTS
T ss_pred CCCeEEEEecCcccCceecCCCCCHH-HHHHHHHhcc
Confidence 999999999986 56799999955 9999999874
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=6.3e-17 Score=122.00 Aligned_cols=99 Identities=13% Similarity=0.258 Sum_probs=81.7
Q ss_pred Cceeec-CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceE
Q psy160 87 NEIEEV-NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAV 160 (346)
Q Consensus 87 ~~v~~l-~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl 160 (346)
..+.++ +.++|+..+. ++++++|.||++||++|+.+.|.|+++++++.+. +.++.++ +++++++|+|+++||+
T Consensus 5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~~~~l~~~~~V~~~Pt~ 83 (111)
T d1xwaa_ 5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDECEDIAMEYNISSMPTF 83 (111)
T ss_dssp CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEeecCcchhhcCCCccccEE
Confidence 467777 5688998774 3578999999999999999999999999998643 6666654 7889999999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHHHHhhc
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|++|+ ..++.|... . +|.+||+++
T Consensus 84 ~~~~~G~~v~~~~G~~~-~-~l~~~I~~~ 110 (111)
T d1xwaa_ 84 VFLKNGVKVEEFAGANA-K-RLEDVIKAN 110 (111)
T ss_dssp EEEETTEEEEEEESCCH-H-HHHHHHHHT
T ss_pred EEEECCEEEEEEeCCCH-H-HHHHHHHhc
Confidence 9999998 455888643 4 799998865
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=6.2e-18 Score=133.13 Aligned_cols=103 Identities=13% Similarity=0.364 Sum_probs=85.3
Q ss_pred cCcEEEccHHHHHHHH-hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCc--CceEEEEE-cChhhhhhCCCccccEEE
Q psy160 191 EDRIELITRVMLETMV-EETQYLAVYFYKLNCNICDQILEGLEKVDDECDI--YGIHMVKI-QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~--~~i~~~~i-~~~~~~~~~~i~~~Pti~ 266 (346)
.+.|..|++++|++++ +.+++++|.||+|||++|+.+.|.|.++|+.+.+ ..+.++.+ .+..++++|+|+++||++
T Consensus 11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Ptl~ 90 (140)
T d2b5ea1 11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV 90 (140)
T ss_dssp SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEE
T ss_pred CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCeEE
Confidence 3578899999999975 5678999999999999999999999999998853 24778888 567789999999999999
Q ss_pred EEeCCe---EEEeecCccccccchhhhhhhccC
Q psy160 267 YFRNGN---PLIFEGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 267 ~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~~ 296 (346)
+|++|+ ++.|.|.++.+. +..|+....
T Consensus 91 ~f~~g~~~~~~~y~G~~t~~~---l~~fi~~~~ 120 (140)
T d2b5ea1 91 LYPGGKKSESVVYQGSRSLDS---LFDFIKENG 120 (140)
T ss_dssp EECCTTSCCCCBCCSCCCHHH---HHHHHHHHC
T ss_pred EEECCEEcceeEeCCCCCHHH---HHHHHHHcC
Confidence 999874 567999986443 667776543
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.70 E-value=6.3e-17 Score=122.15 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=79.5
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEe
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFR 164 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~ 164 (346)
.+...+.++|++++++++.++|+|||+||++|+.+.|.|+++++.+. ++.|+.+| ++.++++|||.++||+++|+
T Consensus 10 vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~ 87 (113)
T d1r26a_ 10 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 87 (113)
T ss_dssp CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc--cccccccccccchhhHHHccccCCCEEEEEE
Confidence 44444789999999999999999999999999999999999999875 47777765 78999999999999999999
Q ss_pred cCCcc-eecCCcchhHHHHHHHhh
Q psy160 165 HRFPS-IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~~~-~y~g~~~~~~~i~~fi~~ 187 (346)
+|+.. ++.|... +.+.+++.+
T Consensus 88 ~G~~v~~~~G~~~--~~l~~~l~~ 109 (113)
T d1r26a_ 88 SGKMLGHVIGANP--GMLRQKLRD 109 (113)
T ss_dssp TTEEEEEEESSCH--HHHHHHHHH
T ss_pred CCEEEEEEeCCCH--HHHHHHHHH
Confidence 99854 5778532 255555543
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.70 E-value=7.5e-17 Score=119.85 Aligned_cols=92 Identities=14% Similarity=0.394 Sum_probs=77.2
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
..|.++|+++++++++++|.||++||++|+.+.|.++++++++. +..++.+ .+++++++|+|+++||+++|++|+
T Consensus 5 i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~ 82 (103)
T d1syra_ 5 VTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 82 (103)
T ss_dssp ECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred eCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhccc--ceEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence 45778999999999999999999999999999999999999987 4567777 678999999999999999999998
Q ss_pred EE-EeecCccccccchhhhhhh
Q psy160 273 PL-IFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 273 ~~-~y~g~~~~~~~~~~~~~i~ 293 (346)
.+ ++.|. +.+ . +..+++
T Consensus 83 ~v~~~~G~-~~~--~-l~~~i~ 100 (103)
T d1syra_ 83 SVDTLLGA-NDS--A-LKQLIE 100 (103)
T ss_dssp EEEEEESC-CHH--H-HHHHHH
T ss_pred EEEEEeCc-CHH--H-HHHHHH
Confidence 65 56674 321 2 555554
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.8e-17 Score=119.62 Aligned_cols=95 Identities=14% Similarity=0.263 Sum_probs=78.4
Q ss_pred eeec-CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEV-NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l-~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
|.++ +.++|++.+.+ +++++|.|||+||++|+.+.|.+.++++.+.+ +.++.+| +++++++|+|+++||+++
T Consensus 2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~~~~~~~~~~V~~~Pt~~~ 79 (105)
T d2ifqa1 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKCMPTFQF 79 (105)
T ss_dssp CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeecccccCHhHHHHcCceEEEEEEE
Confidence 3455 57889999865 46899999999999999999999999998754 5566665 789999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhh
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~ 187 (346)
|++|+. .++.|. + .++|.+++++
T Consensus 80 ~~~G~~v~~~~G~-~-~~~l~~~i~~ 103 (105)
T d2ifqa1 80 FKKGQKVGEFSGA-N-KEKLEATINE 103 (105)
T ss_dssp EETTEEEEEEESC-C-HHHHHHHHHH
T ss_pred EECCEEEEEEeCC-C-HHHHHHHHHh
Confidence 999984 457885 4 3478888875
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.69 E-value=1.1e-16 Score=121.51 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=84.5
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhhCCCCcceE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKWGVTKLPAV 160 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl 160 (346)
.+..++.+.+++.+.++++++|+||+|||++|+++.|.|.+++..++. .+.++.++ ..+++++|+|.++||+
T Consensus 10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl 88 (115)
T d1zmaa1 10 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVPGF 88 (115)
T ss_dssp TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred eeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-hhhhheeecccccccccccccccccccccEE
Confidence 577889999999999999999999999999999999999999988744 47788775 2468899999999999
Q ss_pred EEEecCC-cceecCCcchhHHHHHHHh
Q psy160 161 VYFRHRF-PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 161 ~~~~~g~-~~~y~g~~~~~~~i~~fi~ 186 (346)
++|++|+ ..++.|.++ +++|.+|+.
T Consensus 89 i~~~~gk~~~~~~G~~~-~~el~~fla 114 (115)
T d1zmaa1 89 VHITDGQINVRCDSSMS-AQEIKDFAG 114 (115)
T ss_dssp EEEETTEEEEECCTTCC-HHHHHHHHT
T ss_pred EEEECCEEEEEEcCCCC-HHHHHHHHc
Confidence 9999998 566999988 448999974
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.69 E-value=3.2e-17 Score=123.98 Aligned_cols=98 Identities=11% Similarity=0.203 Sum_probs=76.9
Q ss_pred ceeec-CHHHHHHH----HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKL----LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~----~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.|..+ |.+++++. ..++++++|.||++||++|+.+.|.|.++++.+.+ +.++.+| .+.+|++|+|+++||
T Consensus 5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~~~~l~~~~~I~~~Pt 82 (113)
T d1ti3a_ 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVDELKAVAEEWNVEAMPT 82 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeeeeccccccccCeecccce
Confidence 34444 45555544 44568899999999999999999999999998754 4555554 788999999999999
Q ss_pred EEEEecCCcc-eecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFRHRFPS-IYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~~g~~~-~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++|++|+.+ ++.|. + .++|.+|+.++.
T Consensus 83 ~~~~k~G~~v~~~~G~-~-~~~l~~~i~k~a 111 (113)
T d1ti3a_ 83 FIFLKDGKLVDKTVGA-D-KDGLPTLVAKHA 111 (113)
T ss_dssp EEEEETTEEEEEEECC-C-TTHHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCC-C-HHHHHHHHHHHh
Confidence 9999999854 46674 4 348999998864
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.69 E-value=9.1e-17 Score=121.20 Aligned_cols=95 Identities=15% Similarity=0.293 Sum_probs=77.5
Q ss_pred EEEc-cHHHHHHHHh----ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 194 IELI-TRVMLETMVE----ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 194 v~~l-~~~~~~~~~~----~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
|..+ +.++|++.++ ++++++|.||++||++|+.+.|.++++++.+.+ ++.|+++ ++++++++|+|+++||+
T Consensus 4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 82 (112)
T d1ep7a_ 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc-eEEEEEeeccccccccccccccCCCEE
Confidence 4445 7788887654 578999999999999999999999999999986 7899998 67899999999999999
Q ss_pred EEEeCCeEEE-eecCccccccchhhhhhh
Q psy160 266 VYFRNGNPLI-FEGENKILKGTYIGTYIS 293 (346)
Q Consensus 266 ~~~~~g~~~~-y~g~~~~~~~~~~~~~i~ 293 (346)
++|++|+.+. +.|. +.+ . +..+++
T Consensus 83 ~~~~~G~~v~~~~G~-~~~--~-l~~~i~ 107 (112)
T d1ep7a_ 83 HVYKDGVKADDLVGA-SQD--K-LKALVA 107 (112)
T ss_dssp EEEETTEEEEEEESC-CHH--H-HHHHHH
T ss_pred EEEECCEEEEEEeCc-CHH--H-HHHHHH
Confidence 9999998654 5663 322 2 555554
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.69 E-value=7.1e-18 Score=128.37 Aligned_cols=101 Identities=14% Similarity=0.356 Sum_probs=81.8
Q ss_pred CcEEEccHHHHHHH-HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCc----eEEEEEcChhhhhhCCCccccEEE
Q psy160 192 DRIELITRVMLETM-VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYG----IHMVKIQDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~-~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~----i~~~~i~~~~~~~~~~i~~~Pti~ 266 (346)
+.|..++.++|+++ ++++++++|.||++||++|+.+.|.|+++|+.+.+.. +.+...+....+.+++|+++||++
T Consensus 2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~ 81 (116)
T d2djja1 2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK 81 (116)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence 46789999999996 5788999999999999999999999999999986422 455555677778899999999999
Q ss_pred EEeCCe---EEEeecCccccccchhhhhhhcc
Q psy160 267 YFRNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 267 ~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
+|++|+ ...|.|.++.+. +..|++..
T Consensus 82 ~f~~g~~~~~~~~~g~~~~~~---l~~fi~~~ 110 (116)
T d2djja1 82 LYPAGAKGQPVTYSGSRTVED---LIKFIAEN 110 (116)
T ss_dssp EECSSCTTSCCCCCCCSCHHH---HHHHHHHT
T ss_pred EEECCccCceEEecCCCCHHH---HHHHHHHc
Confidence 998874 567899886433 66666643
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=1.6e-16 Score=119.67 Aligned_cols=97 Identities=19% Similarity=0.407 Sum_probs=78.5
Q ss_pred cEEEc-cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEE
Q psy160 193 RIELI-TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 193 ~v~~l-~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~ 266 (346)
.+..+ +.++|+..+. ++++++|.||++||++|+.+.|.++++++++.+ .+.++.+ ++++++++|+|+++||++
T Consensus 6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T d1xwaa_ 6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFV 84 (111)
T ss_dssp CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc-ceEEEEEEeecCcchhhcCCCccccEEE
Confidence 44444 6788988654 467999999999999999999999999999986 7888888 788999999999999999
Q ss_pred EEeCCeEE-EeecCccccccchhhhhhhc
Q psy160 267 YFRNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 267 ~~~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
+|++|+.+ ++.|... + . +..+++.
T Consensus 85 ~~~~G~~v~~~~G~~~-~--~-l~~~I~~ 109 (111)
T d1xwaa_ 85 FLKNGVKVEEFAGANA-K--R-LEDVIKA 109 (111)
T ss_dssp EEETTEEEEEEESCCH-H--H-HHHHHHH
T ss_pred EEECCEEEEEEeCCCH-H--H-HHHHHHh
Confidence 99999854 4667532 1 2 5566553
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.68 E-value=6.5e-17 Score=121.91 Aligned_cols=88 Identities=15% Similarity=0.346 Sum_probs=75.7
Q ss_pred cCcEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----cChhhhhhCCCccccE
Q psy160 191 EDRIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPA 264 (346)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pt 264 (346)
.+.+..++.++|+++++. +++++|.||++||++|+.+.|.|+++++++. ++.++.+ .+++++++|+|+++||
T Consensus 5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~~~~~l~~~~~V~~~Pt 82 (112)
T d1f9ma_ 5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPT 82 (112)
T ss_dssp TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc--cceeecccccccchhhHhheeeccCCE
Confidence 356788999999998764 5799999999999999999999999999987 4667777 3678999999999999
Q ss_pred EEEEeCCeEE-EeecCc
Q psy160 265 LVYFRNGNPL-IFEGEN 280 (346)
Q Consensus 265 i~~~~~g~~~-~y~g~~ 280 (346)
+++|++|+.+ ++.|..
T Consensus 83 ~~~~k~G~~v~~~~G~~ 99 (112)
T d1f9ma_ 83 FKILKENSVVGEVTGAK 99 (112)
T ss_dssp EEEEETTEEEEEEESSC
T ss_pred EEEEECCEEEEEEeCCC
Confidence 9999999865 467754
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=1.3e-16 Score=119.45 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=78.8
Q ss_pred ecCHHHHHHHHhcCCcE-EEEEECCCChhHHHHHHHHHHHHhhc---cCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 91 EVNRRMLDKLLEENEFV-TVFFYETDHKDSVKVLERLEKIDGET---DNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~-lv~F~~~~C~~c~~~~~~~~~~a~~~---~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
+|+++..+.+...++++ ++.||+|||++|+++.|.+.++|... ....+.+..+| +++++++|+|.++||++++
T Consensus 1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~ 80 (107)
T d1a8la2 1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ 80 (107)
T ss_dssp CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence 46778777777666665 55799999999999999999998654 23347777765 7899999999999999999
Q ss_pred ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 164 RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+ ..++.|..+. +.+.+++.+.
T Consensus 81 ~~G~~~~~~~G~~~~-~~~~~~i~~a 105 (107)
T d1a8la2 81 VNGEDRVEFEGAYPE-KMFLEKLLSA 105 (107)
T ss_dssp ETTEEEEEEESCCCH-HHHHHHHHHH
T ss_pred eCCeEEEEEECCCCH-HHHHHHHHHh
Confidence 9988 5668899884 4899998865
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=2.2e-16 Score=119.51 Aligned_cols=98 Identities=12% Similarity=0.217 Sum_probs=79.8
Q ss_pred ceeec-CHHHHHHHHh----cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcce
Q psy160 88 EIEEV-NRRMLDKLLE----ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPA 159 (346)
Q Consensus 88 ~v~~l-~~~~~~~~~~----~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Pt 159 (346)
.+..+ |.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+ +.++.++ +++++++|+|+++||
T Consensus 7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~~~~~~l~~~~~V~~~Pt 84 (114)
T d1xfla_ 7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTDELKSVASDWAIQAMPT 84 (114)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEeeeceeeccccceeeeEE
Confidence 45555 7888877663 467899999999999999999999999998764 6666665 789999999999999
Q ss_pred EEEEecCCc-ceecCCcchhHHHHHHHhhcc
Q psy160 160 VVYFRHRFP-SIYRGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 160 l~~~~~g~~-~~y~g~~~~~~~i~~fi~~~~ 189 (346)
+++|++|+. .++.|. + .++|.+++.++.
T Consensus 85 ~~~~~~G~~v~~~~G~-~-~~~l~~~i~k~l 113 (114)
T d1xfla_ 85 FMFLKEGKILDKVVGA-K-KDELQSTIAKHL 113 (114)
T ss_dssp EEEEETTEEEEEEESC-C-HHHHHHHHHHHC
T ss_pred EEEEECCEEEEEEeCc-C-HHHHHHHHHHhh
Confidence 999999984 457785 3 448999988753
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.7e-16 Score=118.53 Aligned_cols=96 Identities=11% Similarity=0.225 Sum_probs=80.0
Q ss_pred eeec-CHHHHHHHHhc--CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 89 IEEV-NRRMLDKLLEE--NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 89 v~~l-~~~~~~~~~~~--~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
|..+ |+++|++.+.. ++.++|.||++||++|+.+.|.|+++++++.+ +.|+.+| +++++++|+|+++||+++
T Consensus 3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~d~~~~l~~~~~v~~~Pt~~~ 80 (107)
T d1gh2a_ 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDVHQCQGTAATNNISATPTFQF 80 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc--ccccccccccchhhhhhcCceeceEEEE
Confidence 3444 68899998865 56899999999999999999999999998754 6777665 789999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~ 188 (346)
|++|+. .++.|. + .+.|.++++++
T Consensus 81 ~~~G~~v~~~~G~-~-~~~l~~~i~k~ 105 (107)
T d1gh2a_ 81 FRNKVRIDQYQGA-D-AVGLEEKIKQH 105 (107)
T ss_dssp EETTEEEEEEESS-C-HHHHHHHHHHH
T ss_pred EECCEEEEEEeCC-C-HHHHHHHHHHh
Confidence 999984 457885 4 44788888765
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.67 E-value=2.1e-16 Score=119.39 Aligned_cols=96 Identities=13% Similarity=0.240 Sum_probs=75.3
Q ss_pred cEEEccHHHHHHHH----hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMV----EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~----~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
++..-+.+++++.+ +++++++|.||++||++|+.+.|.|.++++.+. ++.++.+ .+++++++|+|+++||+
T Consensus 6 vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~ 83 (113)
T d1ti3a_ 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred EEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC--CceEEeeeeeccccccccCeecccceE
Confidence 44455666666543 457899999999999999999999999999986 5678877 67899999999999999
Q ss_pred EEEeCCeEEEeecCccccccchhhhhhh
Q psy160 266 VYFRNGNPLIFEGENKILKGTYIGTYIS 293 (346)
Q Consensus 266 ~~~~~g~~~~y~g~~~~~~~~~~~~~i~ 293 (346)
++|++|+.+.+..+.+.+ . |..+++
T Consensus 84 ~~~k~G~~v~~~~G~~~~--~-l~~~i~ 108 (113)
T d1ti3a_ 84 IFLKDGKLVDKTVGADKD--G-LPTLVA 108 (113)
T ss_dssp EEEETTEEEEEEECCCTT--H-HHHHHH
T ss_pred EEEECCEEEEEEcCCCHH--H-HHHHHH
Confidence 999999976654444422 2 555554
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=3.2e-16 Score=118.57 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=72.2
Q ss_pred cEEEccHHHHHHHH----hccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMV----EETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~----~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti 265 (346)
++...|.++|++.+ +++++++|.||++||++|+.+.|.++++++.+. ++.++.+ .+++++++|+|+++||+
T Consensus 8 vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~~~~l~~~~~V~~~Pt~ 85 (114)
T d1xfla_ 8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAMPTF 85 (114)
T ss_dssp CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred EEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc--ccceeEEEeeeceeeccccceeeeEEE
Confidence 44455888888754 357899999999999999999999999999987 5778888 67899999999999999
Q ss_pred EEEeCCeEEE-eecC
Q psy160 266 VYFRNGNPLI-FEGE 279 (346)
Q Consensus 266 ~~~~~g~~~~-y~g~ 279 (346)
++|++|+.+. +.|.
T Consensus 86 ~~~~~G~~v~~~~G~ 100 (114)
T d1xfla_ 86 MFLKEGKILDKVVGA 100 (114)
T ss_dssp EEEETTEEEEEEESC
T ss_pred EEEECCEEEEEEeCc
Confidence 9999998654 5664
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.9e-16 Score=117.02 Aligned_cols=82 Identities=15% Similarity=0.413 Sum_probs=70.5
Q ss_pred EccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
.-+.++|+++++. +++++|.|||+||++|+.+.|.+.++++.+. +..++++ ++++++++|+|+++||+++|++
T Consensus 5 i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~ 82 (105)
T d2ifqa1 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82 (105)
T ss_dssp ECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred cCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc--cceeeecccccCHhHHHHcCceEEEEEEEEEC
Confidence 3467889998764 5789999999999999999999999999987 4567887 7889999999999999999999
Q ss_pred CeEEE-eecC
Q psy160 271 GNPLI-FEGE 279 (346)
Q Consensus 271 g~~~~-y~g~ 279 (346)
|+.+. +.|.
T Consensus 83 G~~v~~~~G~ 92 (105)
T d2ifqa1 83 GQKVGEFSGA 92 (105)
T ss_dssp TEEEEEEESC
T ss_pred CEEEEEEeCC
Confidence 98654 5664
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.6e-16 Score=116.71 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=71.2
Q ss_pred EccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeC
Q psy160 196 LITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRN 270 (346)
Q Consensus 196 ~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~ 270 (346)
..|.++|++.+.. +++++|.||++||++|+.+.|.++++++++. ++.|+++ .+++++++|+|.++||+++|++
T Consensus 6 i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 83 (107)
T d1gh2a_ 6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPTFQFFRN 83 (107)
T ss_dssp ECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEEEEET
T ss_pred cCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc--cccccccccccchhhhhhcCceeceEEEEEEC
Confidence 3477899987754 6789999999999999999999999999987 4778887 7889999999999999999999
Q ss_pred CeEEE-eecC
Q psy160 271 GNPLI-FEGE 279 (346)
Q Consensus 271 g~~~~-y~g~ 279 (346)
|+.+. +.|.
T Consensus 84 G~~v~~~~G~ 93 (107)
T d1gh2a_ 84 KVRIDQYQGA 93 (107)
T ss_dssp TEEEEEEESS
T ss_pred CEEEEEEeCC
Confidence 98654 6664
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=1.3e-16 Score=122.21 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=79.9
Q ss_pred EEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcC--cCceEEEEE--------cChhhhhhCCC--cc
Q psy160 194 IELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD--IYGIHMVKI--------QDPQLAKRYSI--KT 261 (346)
Q Consensus 194 v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~--~~~i~~~~i--------~~~~~~~~~~i--~~ 261 (346)
+..|+.++|++++++++.++|.||||||++|+ .|.|.++|+.+. ...+.++++ .+++++++|+| ++
T Consensus 4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~ 81 (122)
T d2c0ga2 4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN 81 (122)
T ss_dssp CEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred eEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCC
Confidence 56899999999999999999999999999999 499999998864 236888887 35789999988 58
Q ss_pred ccEEEEEeCCe----EEEeecCccccccchhhhhhhccC
Q psy160 262 FPALVYFRNGN----PLIFEGENKILKGTYIGTYISTKA 296 (346)
Q Consensus 262 ~Pti~~~~~g~----~~~y~g~~~~~~~~~~~~~i~~~~ 296 (346)
+||+++|++|. .+.|.|.++.+. +..|++...
T Consensus 82 ~PTi~~f~~g~~~~~~~~~~g~rt~~~---l~~fv~~~~ 117 (122)
T d2c0ga2 82 FPSIFLFKGNADEYVQLPSHVDVTLDN---LKAFVSANT 117 (122)
T ss_dssp CCEEEEESSSSSSEEECCTTSCCCHHH---HHHHHHHHS
T ss_pred CCcEEEEeCCcccccccccCCCCCHHH---HHHHHHHhc
Confidence 99999999874 345778886433 667776654
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.7e-16 Score=120.48 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=71.3
Q ss_pred cHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCe
Q psy160 198 TRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGN 272 (346)
Q Consensus 198 ~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~ 272 (346)
+..++++++. ++++++|.|||+||++|+.+.|.++++++++.+ .+.|+.+ ++++++++|+|+++||+++|++|+
T Consensus 9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~ 87 (137)
T d1qgva_ 9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK 87 (137)
T ss_dssp SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE
T ss_pred CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc-cceEEEeeccccchhhhhcCeeeEEEEEEEeCCc
Confidence 6678999765 356999999999999999999999999999986 7899988 688999999999999999999999
Q ss_pred EEEeec
Q psy160 273 PLIFEG 278 (346)
Q Consensus 273 ~~~y~g 278 (346)
.+....
T Consensus 88 ~i~~~~ 93 (137)
T d1qgva_ 88 HIMIDL 93 (137)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 876543
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.4e-16 Score=120.19 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred CHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC
Q psy160 93 NRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 93 ~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
+.+++++.+.+. ++++|.|||+||++|+++.|.++++++++.+. +.++.+| +++++++|+|+++||+++|.+|+
T Consensus 9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~ 87 (137)
T d1qgva_ 9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK 87 (137)
T ss_dssp SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE
T ss_pred CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhcc-ceEEEeeccccchhhhhcCeeeEEEEEEEeCCc
Confidence 577899988754 58999999999999999999999999998653 6666665 78999999999999999999998
Q ss_pred cce
Q psy160 168 PSI 170 (346)
Q Consensus 168 ~~~ 170 (346)
+..
T Consensus 88 ~i~ 90 (137)
T d1qgva_ 88 HIM 90 (137)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.61 E-value=8.6e-16 Score=116.38 Aligned_cols=96 Identities=18% Similarity=0.316 Sum_probs=80.1
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEc-------ChhhhhhCCCccccEE
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQ-------DPQLAKRYSIKTFPAL 265 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~-------~~~~~~~~~i~~~Pti 265 (346)
.+...+.+.+.+.++++++++|+||++||++|+.+.|.+.++++.++. .+.++.+. ..+++++|+|.++||+
T Consensus 10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl 88 (115)
T d1zmaa1 10 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVPGF 88 (115)
T ss_dssp TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred eeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-hhhhheeecccccccccccccccccccccEE
Confidence 456778899999999999999999999999999999999999999875 67777762 2467899999999999
Q ss_pred EEEeCCeE-EEeecCccccccchhhhhh
Q psy160 266 VYFRNGNP-LIFEGENKILKGTYIGTYI 292 (346)
Q Consensus 266 ~~~~~g~~-~~y~g~~~~~~~~~~~~~i 292 (346)
++|++|+. .++.|..+.++ +..|+
T Consensus 89 i~~~~gk~~~~~~G~~~~~e---l~~fl 113 (115)
T d1zmaa1 89 VHITDGQINVRCDSSMSAQE---IKDFA 113 (115)
T ss_dssp EEEETTEEEEECCTTCCHHH---HHHHH
T ss_pred EEEECCEEEEEEcCCCCHHH---HHHHH
Confidence 99999984 55888876433 55554
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.1e-16 Score=121.28 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=87.7
Q ss_pred ceeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~ 162 (346)
....++.++|+.++.+. +++++.|+++||++|+++.|.|.++++++.+..+.++.+| ++.++++|+|+++||+++
T Consensus 18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~ 97 (132)
T d2hfda1 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_dssp TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence 34568899999988776 4677889999999999999999999999976667788887 889999999999999999
Q ss_pred EecCCc-ceecCCcchhHHHHHHHhhcccc
Q psy160 163 FRHRFP-SIYRGDLSEEEEVLQWLITQKTE 191 (346)
Q Consensus 163 ~~~g~~-~~y~g~~~~~~~i~~fi~~~~~~ 191 (346)
|++|+. ..+.|.++.. ++.+++.....+
T Consensus 98 ~~~G~~v~~~~G~~~~~-~l~~~i~~ll~~ 126 (132)
T d2hfda1 98 FTGGNYRGVLNGIHPWA-ELINLMRGLVEP 126 (132)
T ss_dssp EETTEEEEEECCCSCHH-HHHHHHHHHHSC
T ss_pred EEcCcEeeeecCCCCHH-HHHHHHHHHhCc
Confidence 999984 5588998844 899999876544
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=5.4e-16 Score=117.85 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=71.8
Q ss_pred eeecCHHHHHHHHhcC--CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEE
Q psy160 89 IEEVNRRMLDKLLEEN--EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYF 163 (346)
Q Consensus 89 v~~l~~~~~~~~~~~~--~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~ 163 (346)
...++..+++.++... .++++.|+++||++|+.+.|.|.++++++.+.++.++.+| ++.++++|||+++||+++|
T Consensus 13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 92 (119)
T d2es7a1 13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVF 92 (119)
T ss_dssp CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEE
T ss_pred CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEE
Confidence 4457888888887664 4678889999999999999999999999977678888887 6789999999999999999
Q ss_pred ecCC-cceecCCcchhHHHHHHHhhc
Q psy160 164 RHRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 164 ~~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
++|+ ...+.|.++.+ +++++++..
T Consensus 93 ~~G~~v~~~~G~~~~~-~l~~~i~~l 117 (119)
T d2es7a1 93 TDGKLRGALSGIHPWA-ELLTLMRSI 117 (119)
T ss_dssp SCC----CEESCCCHH-HHHHHHHHH
T ss_pred EcCeEEEEeeCCCCHH-HHHHHHHHH
Confidence 9998 55689998854 899988753
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=6e-16 Score=110.62 Aligned_cols=80 Identities=13% Similarity=0.240 Sum_probs=65.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
++..+++|||+||++|+.+.|.|+++++.+... +.+..++ ++++|++|+|+++||++++++|+ +.|.++.+ +
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~---~~G~~~~~-~ 76 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVMENPQKAMEYGIMAVPTIVINGDVE---FIGAPTKE-A 76 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE---CCSSSSSH-H
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc-cccccccccccccccccCCceEeeEEEEECCcE---EECCCCHH-H
Confidence 466789999999999999999999999987542 4444443 77899999999999999987764 66887744 8
Q ss_pred HHHHHhhc
Q psy160 181 VLQWLITQ 188 (346)
Q Consensus 181 i~~fi~~~ 188 (346)
|.+|++++
T Consensus 77 l~~~i~~~ 84 (85)
T d1fo5a_ 77 LVEAIKKR 84 (85)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.57 E-value=9.1e-15 Score=109.13 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccHHHHHHHHhccceE-EEEEEcCCChhhHHHHHHHHHHHhhc---CcCceEEEEE---cChhhhhhCCCccccEEEEEe
Q psy160 197 ITRVMLETMVEETQYL-AVYFYKLNCNICDQILEGLEKVDDEC---DIYGIHMVKI---QDPQLAKRYSIKTFPALVYFR 269 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~-lv~F~~~~c~~c~~~~~~~~~la~~~---~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~ 269 (346)
|+.+..+.+.+.++++ ++.||++||++|+.+.|.+.++|... .+..+.+..+ .+++++++|+|.++||+++++
T Consensus 2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~ 81 (107)
T d1a8la2 2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV 81 (107)
T ss_dssp CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEe
Confidence 4566666666655655 55699999999999999999998652 2225788877 678999999999999999999
Q ss_pred CCeE-EEeecCccc
Q psy160 270 NGNP-LIFEGENKI 282 (346)
Q Consensus 270 ~g~~-~~y~g~~~~ 282 (346)
+|+. .++.|.++.
T Consensus 82 ~G~~~~~~~G~~~~ 95 (107)
T d1a8la2 82 NGEDRVEFEGAYPE 95 (107)
T ss_dssp TTEEEEEEESCCCH
T ss_pred CCeEEEEEECCCCH
Confidence 9974 567888763
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=4.7e-15 Score=113.43 Aligned_cols=98 Identities=13% Similarity=0.341 Sum_probs=77.2
Q ss_pred cEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE--------cChhhhhhC--CCcc
Q psy160 193 RIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI--------QDPQLAKRY--SIKT 261 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i--------~~~~~~~~~--~i~~ 261 (346)
.+..|+.++|++++.+++.+||.||+|||..|. .|.|+++|+.+.+. +...+.+ .++++|.++ +|++
T Consensus 5 ~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~ 82 (122)
T d1g7ea_ 5 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKES 82 (122)
T ss_dssp SSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSS
T ss_pred ceEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccC
Confidence 456899999999999999999999999998875 37888888887642 2333344 467788875 4789
Q ss_pred ccEEEEEeCCe---EEEeecCccccccchhhhhhhcc
Q psy160 262 FPALVYFRNGN---PLIFEGENKILKGTYIGTYISTK 295 (346)
Q Consensus 262 ~Pti~~~~~g~---~~~y~g~~~~~~~~~~~~~i~~~ 295 (346)
|||+++|++|+ ++.|+|.++.+. +..|+++.
T Consensus 83 yPTi~~f~~G~~~~~~~y~G~rt~~~---l~~fi~~~ 116 (122)
T d1g7ea_ 83 YPVFYLFRDGDFENPVPYSGAVKVGA---IQRWLKGQ 116 (122)
T ss_dssp CEEEEEEESSCCCCCEEEESCCCHHH---HHHHHHTT
T ss_pred CCeEEEEecCcccCceecCCCCCHHH---HHHHHHhc
Confidence 99999999985 678999997544 77777765
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.1e-15 Score=116.55 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=77.5
Q ss_pred cEEEccHHHHHHHHhcc--ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEET--QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~~--~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++.+++++++.+. ++++|.|+++||++|+.+.|.+.++++++.+..+.++.+ .+++++++|+|+++||+++
T Consensus 18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~ 97 (132)
T d2hfda1 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_dssp TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence 44578899999977653 578888999999999999999999999998756888888 6889999999999999999
Q ss_pred EeCCeEE-EeecCccc
Q psy160 268 FRNGNPL-IFEGENKI 282 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~~ 282 (346)
|++|+.+ .+.|.++.
T Consensus 98 ~~~G~~v~~~~G~~~~ 113 (132)
T d2hfda1 98 FTGGNYRGVLNGIHPW 113 (132)
T ss_dssp EETTEEEEEECCCSCH
T ss_pred EEcCcEeeeecCCCCH
Confidence 9999865 47787763
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.51 E-value=2.3e-14 Score=104.51 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=63.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEE 180 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~ 180 (346)
+...++.|++|||++|+.+.|.|++++.... ++.+..+| +++++.+|||+++||+++ +|+. .|.|.++.+ +
T Consensus 15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~-~~~G~~~~~-~ 88 (96)
T d1hyua4 15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE-FGQGRMTLT-E 88 (96)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-EEESCCCHH-H
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEecccchHHHhhcccccccEEEE--CCEE-EEecCCCHH-H
Confidence 3456888999999999999999999998754 36666665 889999999999999854 6764 478988744 8
Q ss_pred HHHHHh
Q psy160 181 VLQWLI 186 (346)
Q Consensus 181 i~~fi~ 186 (346)
|++++.
T Consensus 89 l~~~le 94 (96)
T d1hyua4 89 IVAKVD 94 (96)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998875
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.51 E-value=3.3e-15 Score=113.43 Aligned_cols=90 Identities=10% Similarity=0.166 Sum_probs=64.9
Q ss_pred cEEEccHHHHHHHHhc--cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEE
Q psy160 193 RIELITRVMLETMVEE--TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVY 267 (346)
Q Consensus 193 ~v~~l~~~~~~~~~~~--~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~ 267 (346)
....++..+++++++. ++++++.|+++||++|+.+.|.+.++++++.+.++.++.+ .+++++++|+|+++||+++
T Consensus 12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~ 91 (119)
T d2es7a1 12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLV 91 (119)
T ss_dssp TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence 3456788889887664 5688888999999999999999999999998767888888 6788999999999999999
Q ss_pred EeCCeEE-EeecCccc
Q psy160 268 FRNGNPL-IFEGENKI 282 (346)
Q Consensus 268 ~~~g~~~-~y~g~~~~ 282 (346)
|++|+.+ .+.|.++.
T Consensus 92 ~~~G~~v~~~~G~~~~ 107 (119)
T d2es7a1 92 FTDGKLRGALSGIHPW 107 (119)
T ss_dssp ESCC----CEESCCCH
T ss_pred EEcCeEEEEeeCCCCH
Confidence 9999854 57787763
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.51 E-value=3.9e-15 Score=106.28 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=62.9
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCcccccc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILKG 285 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~~~~ 285 (346)
++..+++|||+||++|+.+.|.++++++.+.+ .+.+..+ .+++++++|+|+++||++++++|+ +.|.++.+.
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~---~~G~~~~~~- 76 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE---FIGAPTKEA- 76 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE---CCSSSSSHH-
T ss_pred CceEEEEEECCCCcChHhhhhhcccccccccc-ccccccccccccccccccCCceEeeEEEEECCcE---EECCCCHHH-
Confidence 35778899999999999999999999999875 6777776 678899999999999999887765 567765332
Q ss_pred chhhhhhh
Q psy160 286 TYIGTYIS 293 (346)
Q Consensus 286 ~~~~~~i~ 293 (346)
+..+++
T Consensus 77 --l~~~i~ 82 (85)
T d1fo5a_ 77 --LVEAIK 82 (85)
T ss_dssp --HHHHHH
T ss_pred --HHHHHH
Confidence 444444
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.51 E-value=4.7e-15 Score=105.82 Aligned_cols=74 Identities=20% Similarity=0.422 Sum_probs=61.0
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcC---ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHh
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDMVKIS---DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~ 78 (346)
.||||||+||+++.|.|+++++++.+ ++.++.+| +++++++|+|+++||+++++. ..|.|..+. +.+.++|.
T Consensus 7 ~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~---~~~~G~~~~-~~l~~~i~ 81 (85)
T d1nhoa_ 7 VFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAINGV---VRFVGAPSR-EELFEAIN 81 (85)
T ss_dssp EESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEETTT---EEEECSSCC-HHHHHHHH
T ss_pred EEECCCCcchHHHHHHHhhhcccccc-cccccccccccchhhHHhcCceEeCEEEECCc---EEEEcCCCH-HHHHHHHH
Confidence 59999999999999999999999843 36666654 689999999999999877443 347888777 59999987
Q ss_pred cc
Q psy160 79 SQ 80 (346)
Q Consensus 79 ~~ 80 (346)
+.
T Consensus 82 ~~ 83 (85)
T d1nhoa_ 82 DE 83 (85)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.50 E-value=1.6e-14 Score=102.91 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=64.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHH
Q psy160 107 VTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQ 183 (346)
Q Consensus 107 ~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~ 183 (346)
.+..||+|||++|+++.|.|+++++++.+ ++.++.+| +++++.+|||+++||++++ |+ ..|.|..+.+ .|.+
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~--~~-~~~~G~~~~~-~l~~ 78 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAIN--GV-VRFVGAPSRE-ELFE 78 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEET--TT-EEEECSSCCH-HHHH
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccc-cccccccccccchhhHHhcCceEeCEEEEC--Cc-EEEEcCCCHH-HHHH
Confidence 35679999999999999999999999854 36676665 7899999999999998773 33 3688988855 9999
Q ss_pred HHhhcc
Q psy160 184 WLITQK 189 (346)
Q Consensus 184 fi~~~~ 189 (346)
+++++.
T Consensus 79 ~i~~~l 84 (85)
T d1nhoa_ 79 AINDEM 84 (85)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998753
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-13 Score=104.99 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=66.3
Q ss_pred ceeecCHHHHHHHHhcC--CcEEEEEEC-------CCChhHHHHHHHHHHHHhhccCCCcEEEEeC----------Chhh
Q psy160 88 EIEEVNRRMLDKLLEEN--EFVTVFFYE-------TDHKDSVKVLERLEKIDGETDNMDITFVKMA----------DPRY 148 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~--~~~lv~F~~-------~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----------~~~l 148 (346)
.|...+.++|++.+... ++++|+||| |||++|+++.|.+.++++.+.+ ++.|+.++ +..+
T Consensus 3 ~i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~~d~~~~l 81 (119)
T d1woua_ 3 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDF 81 (119)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHH
T ss_pred eEEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcccchhhhhH
Confidence 35556788999988654 689999999 4999999999999999988754 36666654 4568
Q ss_pred HHhhCCCCcceEEEEecCCcc
Q psy160 149 ARKWGVTKLPAVVYFRHRFPS 169 (346)
Q Consensus 149 ~~~~~i~~~Ptl~~~~~g~~~ 169 (346)
+++|+|+++||+++|++|+..
T Consensus 82 ~~~~~V~~iPT~i~~~~g~~l 102 (119)
T d1woua_ 82 RKNLKVTAVPTLLKYGTPQKL 102 (119)
T ss_dssp HHHHCCCSSSEEEETTSSCEE
T ss_pred HHhCCeEEEEEEEEEECCeEE
Confidence 999999999999999988743
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.7e-14 Score=106.14 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=68.5
Q ss_pred EEEccHHHHHHHHhc--cceEEEEEEcC-------CChhhHHHHHHHHHHHhhcCcCceEEEEE----------cChhhh
Q psy160 194 IELITRVMLETMVEE--TQYLAVYFYKL-------NCNICDQILEGLEKVDDECDIYGIHMVKI----------QDPQLA 254 (346)
Q Consensus 194 v~~l~~~~~~~~~~~--~~~~lv~F~~~-------~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------~~~~~~ 254 (346)
+...+.++|.+++.+ +++++|.|||+ ||++|+.+.|.+.++++.+.+ ++.|+.+ .+..++
T Consensus 4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~~d~~~~l~ 82 (119)
T d1woua_ 4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDFR 82 (119)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHHH
T ss_pred EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcccchhhhhHH
Confidence 456678899988764 46999999994 999999999999999999886 7888888 235688
Q ss_pred hhCCCccccEEEEEeCCeEEE
Q psy160 255 KRYSIKTFPALVYFRNGNPLI 275 (346)
Q Consensus 255 ~~~~i~~~Pti~~~~~g~~~~ 275 (346)
++|+|+++||+++|++|+.+.
T Consensus 83 ~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 83 KNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp HHHCCCSSSEEEETTSSCEEE
T ss_pred HhCCeEEEEEEEEEECCeEEe
Confidence 999999999999999987543
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.7e-13 Score=103.74 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=67.5
Q ss_pred CHHHHHHHHh--cCCcEEEEEECCCChhHHHHHHHHHHH---HhhccCCCcEEEEeC-------ChhhHHhhCCCCcceE
Q psy160 93 NRRMLDKLLE--ENEFVTVFFYETDHKDSVKVLERLEKI---DGETDNMDITFVKMA-------DPRYARKWGVTKLPAV 160 (346)
Q Consensus 93 ~~~~~~~~~~--~~~~~lv~F~~~~C~~c~~~~~~~~~~---a~~~~~~~i~~~~~~-------~~~l~~~~~i~~~Ptl 160 (346)
+.++++..+. ++++++|.||++||++|+.+.|.+... .+.+.+ +.++.++ ...++++|+|.++||+
T Consensus 9 ~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 86 (117)
T d2fwha1 9 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD--TVLLQANVTANDAQDVALLKHLNVLGLPTI 86 (117)
T ss_dssp SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT--SEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred CHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc--eEEEecccccchhHHHHHHhhhehhhceEE
Confidence 4566666653 357999999999999999999998444 333333 3333332 5578999999999999
Q ss_pred EEEe-cCCcc---eecCCcchhHHHHHHHhh
Q psy160 161 VYFR-HRFPS---IYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 161 ~~~~-~g~~~---~y~g~~~~~~~i~~fi~~ 187 (346)
++|. +|+.. ++.|.++.+ .+++++++
T Consensus 87 ~~~~~~G~~~~~~~~~G~~~~~-~~~~~l~~ 116 (117)
T d2fwha1 87 LFFDGQGQEHPQARVTGFMDAE-TFSAHLRD 116 (117)
T ss_dssp EEECTTSCBCGGGCBCSCCCHH-HHHHHHHH
T ss_pred EEEeCCCcEEecccccccCCHH-HHHHHHhc
Confidence 9995 57633 467888744 89999876
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=4.8e-13 Score=97.34 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=57.7
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCcc
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
....++.|+++||++|+.+.|.++++|.... ++.+..+ .+++++++|+|+++||+++ +|+.+ |.|.++
T Consensus 15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~-~~G~~~ 85 (96)
T d1hyua4 15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF-GQGRMT 85 (96)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-EESCCC
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEecccchHHHhhcccccccEEEE--CCEEE-EecCCC
Confidence 4456778999999999999999999998754 6888887 7889999999999999854 88764 788775
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.1e-12 Score=99.07 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=60.2
Q ss_pred EccHHHHHHHHh--ccceEEEEEEcCCChhhHHHHHHHHH---HHhhcCcCceEEEEE-------cChhhhhhCCCcccc
Q psy160 196 LITRVMLETMVE--ETQYLAVYFYKLNCNICDQILEGLEK---VDDECDIYGIHMVKI-------QDPQLAKRYSIKTFP 263 (346)
Q Consensus 196 ~l~~~~~~~~~~--~~~~~lv~F~~~~c~~c~~~~~~~~~---la~~~~~~~i~~~~i-------~~~~~~~~~~i~~~P 263 (346)
..+.++++..+. ++++++|.|||+||++|+.+.|.+.. +.+.+. ++.+..+ .+.+++++|+|.++|
T Consensus 7 i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 84 (117)
T d2fwha1 7 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVLGLP 84 (117)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred ecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccccchhHHHHHHhhhehhhce
Confidence 345567776554 46799999999999999999998844 444444 3333333 345689999999999
Q ss_pred EEEEEe-CCeEE---EeecCcc
Q psy160 264 ALVYFR-NGNPL---IFEGENK 281 (346)
Q Consensus 264 ti~~~~-~g~~~---~y~g~~~ 281 (346)
|+++|. +|+.+ ++.|.++
T Consensus 85 t~~~~~~~G~~~~~~~~~G~~~ 106 (117)
T d2fwha1 85 TILFFDGQGQEHPQARVTGFMD 106 (117)
T ss_dssp EEEEECTTSCBCGGGCBCSCCC
T ss_pred EEEEEeCCCcEEecccccccCC
Confidence 999994 67643 3456664
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=4.4e-11 Score=100.01 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=67.9
Q ss_pred CcEEEc-cHHHHHHHHhc---cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--cChhhhhhCCCccccEE
Q psy160 192 DRIELI-TRVMLETMVEE---TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--QDPQLAKRYSIKTFPAL 265 (346)
Q Consensus 192 ~~v~~l-~~~~~~~~~~~---~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--~~~~~~~~~~i~~~Pti 265 (346)
+.|..+ +.++|.+.+.. +..++|.||++||++|+.|.+.+.+||..+. .+.|++| +...+..+|++.++||+
T Consensus 99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~~~~~~~~i~~lPtl 176 (217)
T d2trcp_ 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTGAGDRFSSDVLPTL 176 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHTCSTTSCGGGCSEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc--cceEEEEccccchhHHhCCCCCCCeE
Confidence 467677 46888886653 3368999999999999999999999999986 6899998 33346789999999999
Q ss_pred EEEeCCeEEE
Q psy160 266 VYFRNGNPLI 275 (346)
Q Consensus 266 ~~~~~g~~~~ 275 (346)
++|++|+.+.
T Consensus 177 ~~yk~G~~v~ 186 (217)
T d2trcp_ 177 LVYKGGELIS 186 (217)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 9999998654
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=1.1e-10 Score=97.53 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=67.4
Q ss_pred cCceeecC-HHHHHHHHhcC---CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC--ChhhHHhhCCCCcce
Q psy160 86 KNEIEEVN-RRMLDKLLEEN---EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA--DPRYARKWGVTKLPA 159 (346)
Q Consensus 86 ~~~v~~l~-~~~~~~~~~~~---~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~--~~~l~~~~~i~~~Pt 159 (346)
-+.|.+++ .++|.+.+... ..++|.||+|||++|+.+.|.|..+|+.+.. +.|++++ ...+..+|+|.++||
T Consensus 98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~~~~~~~~~~~i~~lPt 175 (217)
T d2trcp_ 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRASNTGAGDRFSSDVLPT 175 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEHHHHTCSTTSCGGGCSE
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEccccchhHHhCCCCCCCe
Confidence 35788885 68888877653 2578999999999999999999999998754 7888876 233668999999999
Q ss_pred EEEEecCCcc
Q psy160 160 VVYFRHRFPS 169 (346)
Q Consensus 160 l~~~~~g~~~ 169 (346)
|++|++|+.+
T Consensus 176 l~~yk~G~~v 185 (217)
T d2trcp_ 176 LLVYKGGELI 185 (217)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9999999843
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.00 E-value=6.8e-10 Score=86.42 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=67.6
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-------------------------------CChhhHH
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-------------------------------ADPRYAR 150 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-------------------------------~~~~l~~ 150 (346)
.+++++++.|+++||++|++..|.+.++.++++..++.++.+ ....+++
T Consensus 21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 100 (143)
T d2fy6a1 21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ 100 (143)
T ss_dssp CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence 356899999999999999999999999988886545544421 1446789
Q ss_pred hhCCCCcceEEEEe-cCC-cceecCCcchhHHHHHHHhhc
Q psy160 151 KWGVTKLPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~~ 188 (346)
.||+.++|+++++. +|+ ...+.|..+.+ .+.+++++.
T Consensus 101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~-~~~~~l~~~ 139 (143)
T d2fy6a1 101 SLNISVYPSWALIGKDGDVQRIVKGSINEA-QALALIRDP 139 (143)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHH-HHHHHHHCT
T ss_pred HcCCCccCEEEEECCCCEEEEEEECCCCHH-HHHHHHHHH
Confidence 99999999999994 576 44578988844 888888764
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.6e-09 Score=83.54 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=60.8
Q ss_pred HhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------CChhhHHhhCCCC
Q psy160 101 LEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------ADPRYARKWGVTK 156 (346)
Q Consensus 101 ~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------~~~~l~~~~~i~~ 156 (346)
+.++++++|.|||+||++|++..|.+.++++. +..+..+.. ....+...|+|.+
T Consensus 17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 94 (136)
T d1z5ye1 17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 94 (136)
T ss_dssp HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCS
T ss_pred HcCCCEEEEEEEcCcCCCcCccccchhhhhhh--hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCC
Confidence 34788999999999999999999999998764 222222221 2556889999999
Q ss_pred cceEEEEe-cCC-cceecCCcchhHHHHHHHhh
Q psy160 157 LPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 157 ~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
+|+.+++. +|+ ...+.|..+.+ ++.+.+.+
T Consensus 95 ~P~~~liD~~G~i~~~~~G~~~~~-~l~~~i~~ 126 (136)
T d1z5ye1 95 APETFLIDGNGIIRYRHAGDLNPR-VWEEEIKP 126 (136)
T ss_dssp BSEEEEECTTSCEEEEEESCCCHH-HHHHHTHH
T ss_pred cceEEEEcCCCEEEEEEEcCCCHH-HHHHHHHH
Confidence 99998885 566 34578877633 55555543
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=1.2e-09 Score=84.02 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=64.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------C-ChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------A-DPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------~-~~~l~~~~~i~~~P 158 (346)
.+++++|.|+++||++|++..|.+.++++++++..+.++.. | ...+.+.||+.++|
T Consensus 24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P 103 (134)
T d1zzoa1 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence 46899999999999999999999999999886543333321 1 45789999999999
Q ss_pred eEEEEe-cCCcceecCCcchhHHHHHHHhh
Q psy160 159 AVVYFR-HRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 159 tl~~~~-~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
+.+++. +|+...+.|..+. +++.+.++.
T Consensus 104 ~~~iiD~~G~i~~~~g~~~~-~~l~~~i~~ 132 (134)
T d1zzoa1 104 AYAFVDPHGNVDVVRGRMSQ-DELTRRVTA 132 (134)
T ss_dssp EEEEECTTCCEEEEESCCCH-HHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCH-HHHHHHHHh
Confidence 999995 4664446777774 477777654
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=98.92 E-value=1.4e-09 Score=84.49 Aligned_cols=84 Identities=15% Similarity=0.327 Sum_probs=63.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------------cChhhhhh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------------QDPQLAKR 256 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------------~~~~~~~~ 256 (346)
.+++++|.||++||++|+...|.+.++.++++..++.+..+ .+..+++.
T Consensus 22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 101 (143)
T d2fy6a1 22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS 101 (143)
T ss_dssp TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence 46899999999999999999999999988877545555443 13356889
Q ss_pred CCCccccEEEEE-eCCeEE-EeecCccccccchhhhhhhc
Q psy160 257 YSIKTFPALVYF-RNGNPL-IFEGENKILKGTYIGTYIST 294 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~-~y~g~~~~~~~~~~~~~i~~ 294 (346)
|+++++|+++++ ++|+.+ .+.|..+.+. +..+++.
T Consensus 102 ~~v~~~P~~~liD~~G~i~~~~~G~~~~~~---~~~~l~~ 138 (143)
T d2fy6a1 102 LNISVYPSWALIGKDGDVQRIVKGSINEAQ---ALALIRD 138 (143)
T ss_dssp TTCCSSSEEEEECTTSCEEEEEESCCCHHH---HHHHHHC
T ss_pred cCCCccCEEEEECCCCEEEEEEECCCCHHH---HHHHHHH
Confidence 999999999999 678743 4678775332 5555554
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=2e-09 Score=82.70 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=56.7
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCcccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKTFP 263 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~~~P 263 (346)
..++++|.||++||++|+...|.+.++++++++..+.++.. .+..+.+.|++.++|
T Consensus 24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P 103 (134)
T d1zzoa1 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence 35799999999999999999999999999987433322222 234678889999999
Q ss_pred EEEEE-eCCeEEEeecCcc
Q psy160 264 ALVYF-RNGNPLIFEGENK 281 (346)
Q Consensus 264 ti~~~-~~g~~~~y~g~~~ 281 (346)
+.+++ ++|+...+.|..+
T Consensus 104 ~~~iiD~~G~i~~~~g~~~ 122 (134)
T d1zzoa1 104 AYAFVDPHGNVDVVRGRMS 122 (134)
T ss_dssp EEEEECTTCCEEEEESCCC
T ss_pred eEEEECCCCeEEEEECCCC
Confidence 99999 4677545566655
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.9e-09 Score=83.17 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=54.6
Q ss_pred HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCcc
Q psy160 206 VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKT 261 (346)
Q Consensus 206 ~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~~ 261 (346)
+...++++|.|||+||++|+...|.+.++++..- .+..... .+..+.+.|++.+
T Consensus 17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~--~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 94 (136)
T d1z5ye1 17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGI--RVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 94 (136)
T ss_dssp HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTTC--CEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCS
T ss_pred HcCCCEEEEEEEcCcCCCcCccccchhhhhhhhh--hhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCC
Confidence 4467899999999999999999999999876421 2222221 3445788899999
Q ss_pred ccEEEEE-eCCeEE-EeecCcc
Q psy160 262 FPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 262 ~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+|+.+++ ++|+.+ .+.|..+
T Consensus 95 ~P~~~liD~~G~i~~~~~G~~~ 116 (136)
T d1z5ye1 95 APETFLIDGNGIIRYRHAGDLN 116 (136)
T ss_dssp BSEEEEECTTSCEEEEEESCCC
T ss_pred cceEEEEcCCCEEEEEEEcCCC
Confidence 9998888 577754 4678664
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.86 E-value=7.7e-09 Score=79.37 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=60.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe----------------------C-ChhhHHhhCCCCcce
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM----------------------A-DPRYARKWGVTKLPA 159 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~----------------------~-~~~l~~~~~i~~~Pt 159 (346)
.+++++|.|+++||++|+..+|.+.+++.+..+..+..+.. | ...+++.|++.++|+
T Consensus 23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~ 102 (134)
T d1lu4a_ 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence 46899999999999999999999999998765433333332 1 457899999999999
Q ss_pred EEEEec-CCcc---eecCCcchhHHHHHHHh
Q psy160 160 VVYFRH-RFPS---IYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 160 l~~~~~-g~~~---~y~g~~~~~~~i~~fi~ 186 (346)
++++.. |+.. ...|..+ .+++.+-+.
T Consensus 103 ~~lid~~G~i~~v~~~~g~~~-~~~l~~~l~ 132 (134)
T d1lu4a_ 103 FVFYRADGTSTFVNNPTAAMS-QDELSGRVA 132 (134)
T ss_dssp EEEECTTSCEEEECCSSSCCC-HHHHHHHHH
T ss_pred EEEEeCCCeEEEEeccCCCCC-HHHHHHHHH
Confidence 999964 5521 2245555 446776654
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=98.81 E-value=6.5e-09 Score=80.86 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=54.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE-----------------------cC----hhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI-----------------------QD----PQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i-----------------------~~----~~~~~~~~i 259 (346)
..++++|.|||+||++|+...|.+.++.+++++. ++.++.+ .+ ..+.+.|+|
T Consensus 27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v 106 (144)
T d1i5ga_ 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence 4679999999999999999999999999888642 4666666 01 235778999
Q ss_pred ccccEEEEEe-C-CeEEEe
Q psy160 260 KTFPALVYFR-N-GNPLIF 276 (346)
Q Consensus 260 ~~~Pti~~~~-~-g~~~~y 276 (346)
.++|+++++. + |+.+.-
T Consensus 107 ~~iPt~~lid~~~G~vi~~ 125 (144)
T d1i5ga_ 107 KSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CCcCEEEEEeCCCCEEEee
Confidence 9999999986 3 666543
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.2e-08 Score=79.36 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHH---HHHHhhccCCCcEEEEeC-----ChhhHHhhCCCCcceEEEEe--
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERL---EKIDGETDNMDITFVKMA-----DPRYARKWGVTKLPAVVYFR-- 164 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~---~~~a~~~~~~~i~~~~~~-----~~~l~~~~~i~~~Ptl~~~~-- 164 (346)
+-.+...+++++++|+|+++||+.|+.|.... .++.+.++. ++.++.++ ...++++|+|.++|++.++.
T Consensus 33 ~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~ 111 (147)
T d2dlxa1 33 TAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPR 111 (147)
T ss_dssp HHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTT
T ss_pred HHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhhhheecCceeEEEEEeCC
Confidence 33444456679999999999999999987643 333333332 25555554 45789999999999999996
Q ss_pred cCCcceecCCcchhHHHHHHHhh
Q psy160 165 HRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 165 ~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
.|+.+..-|.+..+ ++++.+++
T Consensus 112 ~ge~v~~~~~~~~~-~fl~~L~~ 133 (147)
T d2dlxa1 112 TGQKLVEWHQLDVS-SFLDQVTG 133 (147)
T ss_dssp TCCCCEEESSCCHH-HHHHHHHH
T ss_pred CCeEecccCCCCHH-HHHHHHHH
Confidence 47766555555533 55444443
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=98.76 E-value=8.5e-09 Score=80.15 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=50.5
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEe--C-------------------------ChhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKM--A-------------------------DPRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~--~-------------------------~~~l~~~~~i 154 (346)
++++++|.|+|+||++|++.+|.+.++++++.+ .++.++.+ | ...+++.|+|
T Consensus 27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v 106 (144)
T d1i5ga_ 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence 568999999999999999999999999988843 34544432 1 1237889999
Q ss_pred CCcceEEEEec
Q psy160 155 TKLPAVVYFRH 165 (346)
Q Consensus 155 ~~~Ptl~~~~~ 165 (346)
+++||++++..
T Consensus 107 ~~iPt~~lid~ 117 (144)
T d1i5ga_ 107 KSIPTLVGVEA 117 (144)
T ss_dssp CSSSEEEEEET
T ss_pred CCcCEEEEEeC
Confidence 99999999964
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=2.4e-08 Score=77.38 Aligned_cols=83 Identities=8% Similarity=0.138 Sum_probs=61.4
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------------CChhhHHh
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------------ADPRYARK 151 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------------~~~~l~~~ 151 (346)
..++++++.|+++||++|.+..|.+.++++.+++ ++.++.+ ....+++.
T Consensus 27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 105 (143)
T d2b5xa1 27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDA 105 (143)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHH
T ss_pred hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHH
Confidence 4668899999999999999999999999988854 2333322 13457889
Q ss_pred hCCCCcceEEEEe-cCC-cceecCCcchhHHHHHHHh
Q psy160 152 WGVTKLPAVVYFR-HRF-PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 152 ~~i~~~Ptl~~~~-~g~-~~~y~g~~~~~~~i~~fi~ 186 (346)
|++.++|+++++. +|+ ...+.|..+ .+.+.+-++
T Consensus 106 ~~v~~~P~~~~id~~G~i~~~~~G~~~-~~~l~~~l~ 141 (143)
T d2b5xa1 106 FENEYVPAYYVFDKTGQLRHFQAGGSG-MKMLEKRVN 141 (143)
T ss_dssp TCCCCSSEEEEECTTCBEEEEEESCST-THHHHHHHH
T ss_pred cCCCcCCEEEEECCCCEEEEEEECCCC-HHHHHHHHH
Confidence 9999999999884 566 445778766 335665554
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=98.75 E-value=1e-08 Score=79.73 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=53.6
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE-----------------------cC----hhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI-----------------------QD----PQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i-----------------------~~----~~~~~~~~i 259 (346)
..++++|.|||+||++|+...|.+.++.+++. +.++.++.+ .. ..+.+.|+|
T Consensus 27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v 106 (144)
T d1o73a_ 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence 46899999999999999999999999999884 335777766 11 236778999
Q ss_pred ccccEEEEEe-C-CeEEE
Q psy160 260 KTFPALVYFR-N-GNPLI 275 (346)
Q Consensus 260 ~~~Pti~~~~-~-g~~~~ 275 (346)
+++|+++++. + |+.+.
T Consensus 107 ~~~Pt~~lID~~~G~Ii~ 124 (144)
T d1o73a_ 107 ESIPTLITINADTGAIIG 124 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CcCCEEEEEECCCCEEEe
Confidence 9999999996 4 55543
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.75 E-value=1.4e-08 Score=78.79 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=60.7
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe------------------------CChhhHHhhCCCCcc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM------------------------ADPRYARKWGVTKLP 158 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~------------------------~~~~l~~~~~i~~~P 158 (346)
++++++|.||++||++|+...|.+.++.+..+. .+..+.. ....+.+.|++.++|
T Consensus 30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 108 (144)
T d1knga_ 30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF-QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP 108 (144)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS-EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred CCCEEEEEeeccccccccccCchhhhhhhccCc-eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence 458999999999999999999999998776532 1222211 155789999999999
Q ss_pred eEEEEe-cCC-cceecCCcchhHHHHHHHhh
Q psy160 159 AVVYFR-HRF-PSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 159 tl~~~~-~g~-~~~y~g~~~~~~~i~~fi~~ 187 (346)
+.+++. +|+ ...+.|..+.+ ++.+.+.+
T Consensus 109 ~~~liD~~G~i~~~~~G~~~~~-~l~~~i~~ 138 (144)
T d1knga_ 109 ETFVVGREGTIVYKLVGPITPD-NLRSVLLP 138 (144)
T ss_dssp EEEEECTTSBEEEEEESCCCHH-HHHHTHHH
T ss_pred eEEEEcCCCeEEEEEeCCCCHH-HHHHHHHH
Confidence 999886 466 34577887643 66665544
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=1.5e-08 Score=78.64 Aligned_cols=75 Identities=16% Similarity=0.408 Sum_probs=56.9
Q ss_pred HhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhh
Q psy160 206 VEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAK 255 (346)
Q Consensus 206 ~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~ 255 (346)
...+++++|.||++||++|....|.+.++.+++++ ++.+..+ .+..+++
T Consensus 26 ~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 104 (143)
T d2b5xa1 26 LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD 104 (143)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred HhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHH
Confidence 34568999999999999999999999999999875 5555444 1223667
Q ss_pred hCCCccccEEEEE-eCCeE-EEeecCcc
Q psy160 256 RYSIKTFPALVYF-RNGNP-LIFEGENK 281 (346)
Q Consensus 256 ~~~i~~~Pti~~~-~~g~~-~~y~g~~~ 281 (346)
.|++.++|+++++ ++|+. ..+.|..+
T Consensus 105 ~~~v~~~P~~~~id~~G~i~~~~~G~~~ 132 (143)
T d2b5xa1 105 AFENEYVPAYYVFDKTGQLRHFQAGGSG 132 (143)
T ss_dssp HTCCCCSSEEEEECTTCBEEEEEESCST
T ss_pred HcCCCcCCEEEEECCCCEEEEEEECCCC
Confidence 7888999998888 57764 34667654
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=1.3e-08 Score=82.67 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=59.0
Q ss_pred cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE--------------------------------cChhhhhh
Q psy160 209 TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI--------------------------------QDPQLAKR 256 (346)
Q Consensus 209 ~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i--------------------------------~~~~~~~~ 256 (346)
.++++|.||++||++|+...|.+.++++++++ ++.+..+ .+..+++.
T Consensus 32 Gk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~ 110 (187)
T d2cvba1 32 EPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 110 (187)
T ss_dssp SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence 57899999999999999999999999999986 5555443 24457888
Q ss_pred CCCccccEEEEEeCCeEEEeecCcc
Q psy160 257 YSIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 257 ~~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
|++.++|+++++.....+.|.|..+
T Consensus 111 ~~v~~~P~~~liD~~G~i~y~G~id 135 (187)
T d2cvba1 111 YRALRTPEVFLFDERRLLRYHGRVN 135 (187)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSS
T ss_pred ccccceeeEEEEcCCCeEEEEeeec
Confidence 9999999999997555578988754
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=9e-09 Score=80.15 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHhccceEEEEEEcCCChhhHHHHHHH---HHHHhhcCcCceEEEEE-----cChhhhhhCCCccccEEEEEe--CCeEE
Q psy160 205 MVEETQYLAVYFYKLNCNICDQILEGL---EKVDDECDIYGIHMVKI-----QDPQLAKRYSIKTFPALVYFR--NGNPL 274 (346)
Q Consensus 205 ~~~~~~~~lv~F~~~~c~~c~~~~~~~---~~la~~~~~~~i~~~~i-----~~~~~~~~~~i~~~Pti~~~~--~g~~~ 274 (346)
..+++++++|+|+++||.+|+.|.... .++.+.++. ++.++.+ +...++++|++.++|+++++. .|+.+
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v 116 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKL 116 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEe
Confidence 456789999999999999999987644 344444543 6667776 346689999999999999995 47665
Q ss_pred EeecCcc
Q psy160 275 IFEGENK 281 (346)
Q Consensus 275 ~y~g~~~ 281 (346)
+.-|..+
T Consensus 117 ~~~~~~~ 123 (147)
T d2dlxa1 117 VEWHQLD 123 (147)
T ss_dssp EEESSCC
T ss_pred cccCCCC
Confidence 5445543
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.73 E-value=2.1e-08 Score=76.89 Aligned_cols=64 Identities=23% Similarity=0.501 Sum_probs=51.4
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------cChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------~~~~~~~~~~i~~~ 262 (346)
..++++|.||++||++|+...|.+.++++++++ +.++.+ .+..+++.|+++++
T Consensus 23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~ 100 (134)
T d1lu4a_ 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA--VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ 100 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeecccCCceecchhHHHHhhhhcc--ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcC
Confidence 357999999999999999999999999988764 444433 23567888999999
Q ss_pred cEEEEEe-CCeE
Q psy160 263 PALVYFR-NGNP 273 (346)
Q Consensus 263 Pti~~~~-~g~~ 273 (346)
|+++++. +|+.
T Consensus 101 P~~~lid~~G~i 112 (134)
T d1lu4a_ 101 PAFVFYRADGTS 112 (134)
T ss_dssp SEEEEECTTSCE
T ss_pred CEEEEEeCCCeE
Confidence 9999995 5653
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.72 E-value=2e-08 Score=77.93 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=55.1
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------cChhhhhhCCCcccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------QDPQLAKRYSIKTFP 263 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------~~~~~~~~~~i~~~P 263 (346)
.+++++|.||++||++|+...|.+.++.+.++. .+..+.+ .+..+.+.|++.++|
T Consensus 30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 108 (144)
T d1knga_ 30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF-QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP 108 (144)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS-EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred CCCEEEEEeeccccccccccCchhhhhhhccCc-eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence 357999999999999999999999999877542 2222222 355688899999999
Q ss_pred EEEEEe-CCeEE-EeecCcc
Q psy160 264 ALVYFR-NGNPL-IFEGENK 281 (346)
Q Consensus 264 ti~~~~-~g~~~-~y~g~~~ 281 (346)
+.+++. +|+.+ .+.|..+
T Consensus 109 ~~~liD~~G~i~~~~~G~~~ 128 (144)
T d1knga_ 109 ETFVVGREGTIVYKLVGPIT 128 (144)
T ss_dssp EEEEECTTSBEEEEEESCCC
T ss_pred eEEEEcCCCeEEEEEeCCCC
Confidence 998884 77643 4567665
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=98.71 E-value=1.6e-08 Score=78.51 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=51.0
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhcc-CCCcEEEEe--C-------------------------ChhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETD-NMDITFVKM--A-------------------------DPRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~-~~~i~~~~~--~-------------------------~~~l~~~~~i 154 (346)
++++++|.|+|+||++|++..|.+.++++++. +.++.++.+ | ...+.+.|+|
T Consensus 27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v 106 (144)
T d1o73a_ 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence 56899999999999999999999999998883 444555532 1 1247889999
Q ss_pred CCcceEEEEec
Q psy160 155 TKLPAVVYFRH 165 (346)
Q Consensus 155 ~~~Ptl~~~~~ 165 (346)
.++||++++..
T Consensus 107 ~~~Pt~~lID~ 117 (144)
T d1o73a_ 107 ESIPTLITINA 117 (144)
T ss_dssp CSSSEEEEEET
T ss_pred CcCCEEEEEEC
Confidence 99999999974
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=1.8e-08 Score=72.98 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=62.3
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCCcceecCCcchhH
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEE 179 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 179 (346)
+.-+.+++|+++||++|+.+.+.+++++..+. ..++.+| ++.+.++|+++ .|+|++ +|+.. ..|..+ ++
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~-~~g~~d-~~ 85 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL-MMHRVN-TS 85 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE-EESSCC-HH
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccccCHHHHHHhccc-CCceee--cCceE-EeCCCC-HH
Confidence 34578999999999999999999999877653 4456655 77899999987 998765 66643 457776 44
Q ss_pred HHHHHHhhcccc
Q psy160 180 EVLQWLITQKTE 191 (346)
Q Consensus 180 ~i~~fi~~~~~~ 191 (346)
.|.+++++...+
T Consensus 86 ~L~~~L~~l~~~ 97 (100)
T d1wjka_ 86 KLEKQLRKLSGP 97 (100)
T ss_dssp HHHHHHHSSSCS
T ss_pred HHHHHHHHHhcC
Confidence 899998876544
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.9e-08 Score=77.16 Aligned_cols=73 Identities=5% Similarity=0.043 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhc-cCCCcEEEEeC---ChhhHH-hhCCCCcceEEEEe-cCC
Q psy160 95 RMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGET-DNMDITFVKMA---DPRYAR-KWGVTKLPAVVYFR-HRF 167 (346)
Q Consensus 95 ~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~-~~~~i~~~~~~---~~~l~~-~~~i~~~Ptl~~~~-~g~ 167 (346)
+.+....+++++++|.||++||++|+.+.|.+.+..+.. ...++..+.+| ...++. .....++||++++. +|+
T Consensus 16 ~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~ 94 (135)
T d1sena_ 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK 94 (135)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCe
Confidence 445566678899999999999999999999987766543 22357777776 333443 33455689999996 465
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=4.5e-08 Score=75.20 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=63.3
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-------------------------CChhhHHhhCCCCc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-------------------------ADPRYARKWGVTKL 157 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-------------------------~~~~l~~~~~i~~~ 157 (346)
.+++++|.|+++||++|.+..|.+.++.+.+...++.++.+ ....+++.|++.++
T Consensus 24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 103 (137)
T d1st9a_ 24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 103 (137)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence 45789999999999999999999999999986555555532 14468899999999
Q ss_pred ceEEEEec-CC-cceecCCcchhHHHHHHHh
Q psy160 158 PAVVYFRH-RF-PSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 158 Ptl~~~~~-g~-~~~y~g~~~~~~~i~~fi~ 186 (346)
|+++++.. |+ ...+.|..+.+ .+.++++
T Consensus 104 P~~~liD~~G~i~~~~~G~~~~~-~~~~~l~ 133 (137)
T d1st9a_ 104 PTTFLINPEGKVVKVVTGTMTES-MIHDYMN 133 (137)
T ss_dssp CEEEEECTTSEEEEEEESCCCHH-HHHHHHH
T ss_pred ceEEEECCCCEEEEEEECCCCHH-HHHHHHH
Confidence 99999864 55 34567887633 5655553
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=98.64 E-value=4.1e-08 Score=76.05 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=55.3
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcC-ceEEEEE---------------------------cChhhhhhCCC
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIY-GIHMVKI---------------------------QDPQLAKRYSI 259 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~-~i~~~~i---------------------------~~~~~~~~~~i 259 (346)
..++++|.||++||++|....|.+.++.+++... ++.++.+ ....+.+.|+|
T Consensus 25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v 104 (144)
T d1o8xa_ 25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 104 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence 4579999999999999999999999999998532 4655555 01247888999
Q ss_pred ccccEEEEEe-C-CeEEEeec
Q psy160 260 KTFPALVYFR-N-GNPLIFEG 278 (346)
Q Consensus 260 ~~~Pti~~~~-~-g~~~~y~g 278 (346)
+++|+++++. + |+.+..+|
T Consensus 105 ~~~Pt~~liD~~~G~Vi~~~~ 125 (144)
T d1o8xa_ 105 ESIPTLIGVDADSGDVVTTRA 125 (144)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CcCCEEEEEeCCCCEEEEEec
Confidence 9999999996 4 56655443
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=7.6e-08 Score=73.87 Aligned_cols=74 Identities=15% Similarity=0.346 Sum_probs=58.2
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------------------------cChhhhhhCCCccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------------------------QDPQLAKRYSIKTF 262 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------------------------~~~~~~~~~~i~~~ 262 (346)
..++++|.||++||++|....+.+.++.+++.+.++.++.+ .+..+++.|++.++
T Consensus 24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 103 (137)
T d1st9a_ 24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 103 (137)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence 45789999999999999999999999999987656776665 13356788899999
Q ss_pred cEEEEEe-CCeE-EEeecCcc
Q psy160 263 PALVYFR-NGNP-LIFEGENK 281 (346)
Q Consensus 263 Pti~~~~-~g~~-~~y~g~~~ 281 (346)
|+++++. +|+. ..+.|..+
T Consensus 104 P~~~liD~~G~i~~~~~G~~~ 124 (137)
T d1st9a_ 104 PTTFLINPEGKVVKVVTGTMT 124 (137)
T ss_dssp CEEEEECTTSEEEEEEESCCC
T ss_pred ceEEEECCCCEEEEEEECCCC
Confidence 9998884 6664 33567664
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=98.61 E-value=3.5e-08 Score=80.05 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=60.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-------------------------------C-ChhhHH
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM-------------------------------A-DPRYAR 150 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-------------------------------~-~~~l~~ 150 (346)
.+++++|.|+++||++|++..|.+.++++++++ ++.++.+ | ...+++
T Consensus 31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~ 109 (187)
T d2cvba1 31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAK 109 (187)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHH
T ss_pred CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhcc
Confidence 457899999999999999999999999999854 3444321 1 556899
Q ss_pred hhCCCCcceEEEEecCCcceecCCcch
Q psy160 151 KWGVTKLPAVVYFRHRFPSIYRGDLSE 177 (346)
Q Consensus 151 ~~~i~~~Ptl~~~~~g~~~~y~g~~~~ 177 (346)
.|++..+|+.+++.....+.|.|.+++
T Consensus 110 ~~~v~~~P~~~liD~~G~i~y~G~idd 136 (187)
T d2cvba1 110 AYRALRTPEVFLFDERRLLRYHGRVND 136 (187)
T ss_dssp HTTCCEESEEEEECTTCBEEEEECSSS
T ss_pred cccccceeeEEEEcCCCeEEEEeeecC
Confidence 999999999999976557789998763
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=4e-08 Score=75.32 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=50.8
Q ss_pred HHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcC-cCceEEEEE---cChhhhhh-CCCccccEEEEEe-CCeE
Q psy160 202 LETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECD-IYGIHMVKI---QDPQLAKR-YSIKTFPALVYFR-NGNP 273 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~-~~~i~~~~i---~~~~~~~~-~~i~~~Pti~~~~-~g~~ 273 (346)
+....+++++++|.||++||++|+.+.|.+.+..+..+ ..++..+.+ .....+.. ....++|+++++. +|+.
T Consensus 18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 95 (135)
T d1sena_ 18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 95 (135)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeE
Confidence 34456679999999999999999999999987664332 125677777 33344433 3445689999995 5654
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.3e-07 Score=69.65 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=84.3
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCCe--E
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGN--P 273 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~--~ 273 (346)
.-+.+.+++++..++.++|.|+.+--+ .....|.++|+.++ ++.|+.+.+.++++.++++. |+|++||+.. .
T Consensus 5 l~~~~~~e~f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~--d~~F~~t~~~~v~~~~~v~~-~~Ivl~k~~de~~ 78 (110)
T d1bjxa_ 5 LPDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAID--DIPFGITSNSDVFSKYQLDK-DGVVLFKKFDEGR 78 (110)
T ss_dssp CCSHHHHHHHHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCS--SSCEEEECCSHHHHHTTCSS-CEEEEEESSSSSB
T ss_pred cCCHHHHHHHhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCc--CceEEEECCHHHHHHcCCCC-CeEEEeccCCccc
Confidence 446788899999999999999975432 56789999999985 57888888999999999976 9999999753 4
Q ss_pred EEeecCccccccchhhhhhhccCCCCCCcccCCC
Q psy160 274 LIFEGENKILKGTYIGTYISTKAFSLIPFCFSEK 307 (346)
Q Consensus 274 ~~y~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 307 (346)
..|.|..+.+. |..|++.+..|++.+++.++
T Consensus 79 ~~~~~~~~~~~---l~~fi~~~~~PlV~e~~~e~ 109 (110)
T d1bjxa_ 79 NNFEGEVTKEN---LLDFIKHNQLPLVIEFTEQT 109 (110)
T ss_dssp CCCCSCCCHHH---HHHHHHHHSSCCCSSCCCTT
T ss_pred cccCCCCCHHH---HHHHHHHcCcCcEEecCCCC
Confidence 55677765433 89999999999999999886
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=98.58 E-value=6.5e-08 Score=74.89 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=53.3
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccC-CCcEEEEe--C-------------------------ChhhHHhhCC
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDN-MDITFVKM--A-------------------------DPRYARKWGV 154 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~-~~i~~~~~--~-------------------------~~~l~~~~~i 154 (346)
++++++|.|+++||++|+...|.+.++++++.. .++.++.+ + ..++.+.|+|
T Consensus 25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v 104 (144)
T d1o8xa_ 25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 104 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence 468999999999999999999999999999843 34444432 1 2358889999
Q ss_pred CCcceEEEEec--CCccee
Q psy160 155 TKLPAVVYFRH--RFPSIY 171 (346)
Q Consensus 155 ~~~Ptl~~~~~--g~~~~y 171 (346)
+++||++++.. |+.+..
T Consensus 105 ~~~Pt~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 105 ESIPTLIGVDADSGDVVTT 123 (144)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CcCCEEEEEeCCCCEEEEE
Confidence 99999999974 444333
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=1.2e-07 Score=68.56 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=56.5
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCccccEEEEEeCCeEEEeecCccccc
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIKTFPALVYFRNGNPLIFEGENKILK 284 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~~~Pti~~~~~g~~~~y~g~~~~~~ 284 (346)
+.-+.++.|+++||++|+.+.+.+++++..+. ..+..+ .++++.++|+++ .|++++ +|+.+ ..|..+.+
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~-~~g~~d~~- 85 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL-MMHRVNTS- 85 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE-EESSCCHH-
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccccCHHHHHHhccc-CCceee--cCceE-EeCCCCHH-
Confidence 34578999999999999999999999987654 455555 678899999997 997654 77654 44655422
Q ss_pred cchhhhhhhc
Q psy160 285 GTYIGTYIST 294 (346)
Q Consensus 285 ~~~~~~~i~~ 294 (346)
.+..+++.
T Consensus 86 --~L~~~L~~ 93 (100)
T d1wjka_ 86 --KLEKQLRK 93 (100)
T ss_dssp --HHHHHHHS
T ss_pred --HHHHHHHH
Confidence 25555554
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.3e-06 Score=63.96 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=79.8
Q ss_pred CHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCC--cce
Q psy160 93 NRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRF--PSI 170 (346)
Q Consensus 93 ~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~ 170 (346)
+.+.+++++.+++.++|.|....- ......|.++|+.++ ++.|+.+....++..+|+.. |+|++|++.. ...
T Consensus 7 ~~~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~--d~~F~~t~~~~v~~~~~v~~-~~Ivl~k~~de~~~~ 80 (110)
T d1bjxa_ 7 DGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAID--DIPFGITSNSDVFSKYQLDK-DGVVLFKKFDEGRNN 80 (110)
T ss_dssp SHHHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHHCS--SSCEEEECCSHHHHHTTCSS-CEEEEEESSSSSBCC
T ss_pred CHHHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHhCc--CceEEEECCHHHHHHcCCCC-CeEEEeccCCccccc
Confidence 568899999999999999987532 245678999999875 37889999999999999975 9999999844 455
Q ss_pred ecCCcchhHHHHHHHhhccccCcEEEccHH
Q psy160 171 YRGDLSEEEEVLQWLITQKTEDRIELITRV 200 (346)
Q Consensus 171 y~g~~~~~~~i~~fi~~~~~~~~v~~l~~~ 200 (346)
|.|..+.+ +|.+|+..+..| .|..++.+
T Consensus 81 ~~~~~~~~-~l~~fi~~~~~P-lV~e~~~e 108 (110)
T d1bjxa_ 81 FEGEVTKE-NLLDFIKHNQLP-LVIEFTEQ 108 (110)
T ss_dssp CCSCCCHH-HHHHHHHHHSSC-CCSSCCCT
T ss_pred cCCCCCHH-HHHHHHHHcCcC-cEEecCCC
Confidence 78888755 999999999988 44455543
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=3.7e-07 Score=72.39 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=54.5
Q ss_pred ecCHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhh---CCCCcceEEEEec
Q psy160 91 EVNRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKW---GVTKLPAVVYFRH 165 (346)
Q Consensus 91 ~l~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~---~i~~~Ptl~~~~~ 165 (346)
.++++..+++.. .++..++.|+++||++|++..|.+.+++..+.+.++.++.++ +++...+| +...+|.+++...
T Consensus 40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~ 119 (166)
T d1z6na1 40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE 119 (166)
T ss_dssp CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCc
Confidence 456666666544 346678999999999999999999999988765445555444 55667777 4557788877754
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=5.2e-07 Score=71.47 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=53.6
Q ss_pred EccHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhC---CCccccEEEEE
Q psy160 196 LITRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRY---SIKTFPALVYF 268 (346)
Q Consensus 196 ~l~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~---~i~~~Pti~~~ 268 (346)
.++.+..+++.. ..+..++.|+++||++|+...|.+.++++.+. ++.+..+ .+++..+.| +...+|.+++.
T Consensus 40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~ 117 (166)
T d1z6na1 40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVL 117 (166)
T ss_dssp CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--CCcEEEEECccCHHHHHHHHHhccccccceeec
Confidence 345555555544 45677888999999999999999999999876 4555555 566677777 44567888777
Q ss_pred eCC
Q psy160 269 RNG 271 (346)
Q Consensus 269 ~~g 271 (346)
...
T Consensus 118 d~~ 120 (166)
T d1z6na1 118 DEE 120 (166)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.20 E-value=2.9e-06 Score=67.67 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=51.9
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----cCh---------------------------hhhhh
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDP---------------------------QLAKR 256 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~---------------------------~~~~~ 256 (346)
..++++|.||++||++|....+.+.++.+.+.+.++.++.+ +++ .+...
T Consensus 55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (176)
T d1jfua_ 55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 134 (176)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence 35799999999999999999999999998887545555554 111 11223
Q ss_pred CCCccccEEEEE-eCCeEE-EeecCcc
Q psy160 257 YSIKTFPALVYF-RNGNPL-IFEGENK 281 (346)
Q Consensus 257 ~~i~~~Pti~~~-~~g~~~-~y~g~~~ 281 (346)
+++.++|+.+++ ++|+.+ ++.|...
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~ 161 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAE 161 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCC
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCC
Confidence 346678998888 466643 4667654
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.14 E-value=4.4e-06 Score=66.57 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=58.2
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEE--EeC-------------------------Chh----hHHh
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFV--KMA-------------------------DPR----YARK 151 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~--~~~-------------------------~~~----l~~~ 151 (346)
.++++++.|+++||++|....+.+.++.+.+...++.++ .++ ... +...
T Consensus 55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (176)
T d1jfua_ 55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 134 (176)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence 558999999999999999999999999988855443333 321 112 2234
Q ss_pred hCCCCcceEEEEec-CCc-ceecCCcc-hhHHHHHHHhhc
Q psy160 152 WGVTKLPAVVYFRH-RFP-SIYRGDLS-EEEEVLQWLITQ 188 (346)
Q Consensus 152 ~~i~~~Ptl~~~~~-g~~-~~y~g~~~-~~~~i~~fi~~~ 188 (346)
+++.++|+.+++.. |+. ..+.|... .++++++.|+..
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al 174 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 174 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHh
Confidence 56778899888854 553 34667532 234777777653
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.99 E-value=2.2e-05 Score=56.11 Aligned_cols=91 Identities=18% Similarity=0.305 Sum_probs=71.6
Q ss_pred CHHHHHHHHh-cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecC--Ccc
Q psy160 93 NRRMLDKLLE-ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHR--FPS 169 (346)
Q Consensus 93 ~~~~~~~~~~-~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g--~~~ 169 (346)
+.++++.+++ .++.++|-|+...-+ .....|.++|..++. ++.|+.+...++++++|++ .|+|++|++- ...
T Consensus 6 ~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd-~~~F~~t~d~~va~~~~v~-~~~vvlfr~fde~~~ 80 (102)
T d1a8ya2 6 GERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFATFDSKVAKKLTLK-LNEIDFYEAFMEEPV 80 (102)
T ss_dssp SHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTT-TSCEEEECCHHHHHHHCCC-TTCEEEECTTCSSEE
T ss_pred CHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCC-CceEEEECCHHHHHHcCCC-CCCEEEeeecCCCce
Confidence 4677889987 456788888874322 356788899988754 3889999999999999995 7999999973 367
Q ss_pred eecCC-cchhHHHHHHHhhcc
Q psy160 170 IYRGD-LSEEEEVLQWLITQK 189 (346)
Q Consensus 170 ~y~g~-~~~~~~i~~fi~~~~ 189 (346)
.|.|. .+ .++|..|+.++.
T Consensus 81 ~~~~~~~t-~~~i~~Fi~~n~ 100 (102)
T d1a8ya2 81 TIPDKPNS-EEEIVNFVEEHR 100 (102)
T ss_dssp ECSSSSCC-HHHHHHHHHHTC
T ss_pred ecCCCCCC-HHHHHHHHHHhc
Confidence 79986 55 569999999875
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.95 E-value=5.5e-05 Score=56.99 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=77.9
Q ss_pred ceeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCC--CCcceEEE
Q psy160 88 EIEEVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGV--TKLPAVVY 162 (346)
Q Consensus 88 ~v~~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i--~~~Ptl~~ 162 (346)
.+.++|.+|+..+.+.+.+.+++|+.+. ....++...+.++|+++++. +.|+.+| +....+.||+ ..+|++++
T Consensus 7 Lv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i 84 (133)
T d2djka1 7 LIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-INFGTIDAKAFGAHAGNLNLKTDKFPAFAI 84 (133)
T ss_dssp CSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred ceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeHHHhHHHHHHhcCCcccCCcEEE
Confidence 8999999999999999899888888765 45688999999999999764 8888887 5567778888 46799999
Q ss_pred EecCC--ccee--cCCcchhHHHHHHHhhcc
Q psy160 163 FRHRF--PSIY--RGDLSEEEEVLQWLITQK 189 (346)
Q Consensus 163 ~~~g~--~~~y--~g~~~~~~~i~~fi~~~~ 189 (346)
+.... .+.| ++..+ .++|.+|+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~i~-~~~i~~Fi~d~~ 114 (133)
T d2djka1 85 QEVAKNQKFPFDQEKEIT-FEAIKAFVDDFV 114 (133)
T ss_dssp ECTTTCCBCCCCSSSCCC-HHHHHHHHHHHH
T ss_pred EEcCCCceecCCccccCC-HHHHHHHHHHHH
Confidence 86432 3444 34555 458999998743
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.81 E-value=4.5e-05 Score=54.41 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=70.1
Q ss_pred cHHHHHHHHh-ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCC--eEE
Q psy160 198 TRVMLETMVE-ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNG--NPL 274 (346)
Q Consensus 198 ~~~~~~~~~~-~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g--~~~ 274 (346)
+.++++.+++ .++.++|.|+..--+ .....|.++|..+++ ++.|+.+.+++++++++++ .|++++|++= +..
T Consensus 6 ~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd-~~~F~~t~d~~va~~~~v~-~~~vvlfr~fde~~~ 80 (102)
T d1a8ya2 6 GERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFATFDSKVAKKLTLK-LNEIDFYEAFMEEPV 80 (102)
T ss_dssp SHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTT-TSCEEEECCHHHHHHHCCC-TTCEEEECTTCSSEE
T ss_pred CHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCC-CceEEEECCHHHHHHcCCC-CCCEEEeeecCCCce
Confidence 5577888887 567889999875332 467899999999975 7899999999999999996 6999999853 467
Q ss_pred EeecC-ccccccchhhhhhhccC
Q psy160 275 IFEGE-NKILKGTYIGTYISTKA 296 (346)
Q Consensus 275 ~y~g~-~~~~~~~~~~~~i~~~~ 296 (346)
.|.|. .+. .-|..|++.++
T Consensus 81 ~~~~~~~t~---~~i~~Fi~~n~ 100 (102)
T d1a8ya2 81 TIPDKPNSE---EEIVNFVEEHR 100 (102)
T ss_dssp ECSSSSCCH---HHHHHHHHHTC
T ss_pred ecCCCCCCH---HHHHHHHHHhc
Confidence 88885 432 22777777654
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.78 E-value=5.9e-05 Score=58.61 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=52.0
Q ss_pred HHHHHhcCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------C-ChhhHHh
Q psy160 97 LDKLLEENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------A-DPRYARK 151 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------~-~~~l~~~ 151 (346)
+.++..+++++++.|| +.||++|...++.+.+++..+.+.++.++.+ | ..++++.
T Consensus 23 Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 102 (160)
T d2cx4a1 23 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKL 102 (160)
T ss_dssp HHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHH
T ss_pred hHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHH
Confidence 4455557788888888 8899999999999999998886655555533 1 4567888
Q ss_pred hCCC----------CcceEEEEe-cCC
Q psy160 152 WGVT----------KLPAVVYFR-HRF 167 (346)
Q Consensus 152 ~~i~----------~~Ptl~~~~-~g~ 167 (346)
||+. ..|+.+++. +|+
T Consensus 103 ~gv~~~~~~~~~~~~~~~~flId~~G~ 129 (160)
T d2cx4a1 103 YNVYHEDLKGLKMVAKRAVFIVKPDGT 129 (160)
T ss_dssp TTCEEEEETTEEEEECCEEEEECTTSB
T ss_pred cCccccccccccccceeeEEEEcCCCE
Confidence 8873 357777774 454
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00017 Score=53.61 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=72.3
Q ss_pred ecCHHHHHHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCC-cceEEEEecC
Q psy160 91 EVNRRMLDKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTK-LPAVVYFRHR 166 (346)
Q Consensus 91 ~l~~~~~~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~-~Ptl~~~~~g 166 (346)
+++.+++.++++++.+.++.|+.+. ..-..+.+.+.++|+++++. +.|+.+| ..+..+.+|+.. .|.+++....
T Consensus 4 ei~~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk-i~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~ 81 (125)
T d2b5ea3 4 EIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL-MNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT 81 (125)
T ss_dssp BCCHHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT-CEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred ccCHHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe-eEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence 6899999999999999999999875 34568999999999999764 8888777 556778899864 7999988754
Q ss_pred Cccee---------------cCCcchhHHHHHHHhhc
Q psy160 167 FPSIY---------------RGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 167 ~~~~y---------------~g~~~~~~~i~~fi~~~ 188 (346)
....| .+..+.+ +|.+|+.+.
T Consensus 82 ~~~ky~~~~~~~~~~~~~~~~~e~t~~-~i~~F~~d~ 117 (125)
T d2b5ea3 82 EDLKYGLPQLSEEAFDELSDKIVLESK-AIESLVKDF 117 (125)
T ss_dssp TTEEEECCCCCHHHHHTCCSCCCCCHH-HHHHHHHHH
T ss_pred cCcccccchhhhhhcccccccccCCHH-HHHHHHHHH
Confidence 33333 2445533 777777654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.58 E-value=0.00012 Score=53.57 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=56.9
Q ss_pred CCChhhHHHHHHHHHHHhhhcccCCeEEEcCC---hHHHHhcCCCCCCeEEEEeCCce--eeecCCCCCHHHHHHHHh
Q psy160 6 ENCPECDDILEELEHIDGDADQYGIDMVKISD---TEAAAKYNIINLPSLVYFRKQVP--LLYDGDLFDEEKILTWLT 78 (346)
Q Consensus 6 ~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~---~~~c~~~~i~~~Ptl~~f~~~~~--~~y~G~~~~~~~i~~~i~ 78 (346)
+.|+.|+.+...++.++..-++..+.+.+.+. .+++.+|+|...|++.++.+|.. +.|.|-+..+ ++..|+.
T Consensus 33 ~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~Gh-Ef~Slil 109 (119)
T d1a8la1 33 DHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGH-EFAAFLE 109 (119)
T ss_dssp SSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTT-HHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccCch-hHHHHHH
Confidence 57999999999888888876654555566654 57899999999999999998754 7899987775 7766664
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.57 E-value=0.00033 Score=51.21 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=59.0
Q ss_pred cEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEeC---ChhhHHhhCCCCcceEEEEecCC--cceecCCcchhH
Q psy160 106 FVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKMA---DPRYARKWGVTKLPAVVYFRHRF--PSIYRGDLSEEE 179 (346)
Q Consensus 106 ~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~~~~~ 179 (346)
+.++.|.. ..|+.|..+..-+++++..-.+..+.+...+ .+.++++|+|...|++.+..+|+ .++|.|-..-.
T Consensus 24 V~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~Gh- 102 (119)
T d1a8la1 24 VKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGH- 102 (119)
T ss_dssp EEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTT-
T ss_pred EEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccCch-
Confidence 34666665 4699999999999988876443233344444 35789999999999999998876 47899966534
Q ss_pred HHHHHHhh
Q psy160 180 EVLQWLIT 187 (346)
Q Consensus 180 ~i~~fi~~ 187 (346)
++..|+..
T Consensus 103 Ef~Slila 110 (119)
T d1a8la1 103 EFAAFLED 110 (119)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 67777654
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.56 E-value=0.00012 Score=56.77 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=37.1
Q ss_pred HHHHHhccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 202 LETMVEETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+.++....++++|.|| +.||++|....+.+.++...+++..+.++.+
T Consensus 23 Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 23 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp HHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEE
T ss_pred hHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccc
Confidence 4555656778888888 8899999999999999998887655655555
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.56 E-value=0.0001 Score=49.27 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=54.9
Q ss_pred ecCCCChhhHHHHHHHHHHHhhhcccCCeEEEcCChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHH
Q psy160 3 INDENCPECDDILEELEHIDGDADQYGIDMVKISDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWL 77 (346)
Q Consensus 3 Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i 77 (346)
.+.++|+.|.++....++++.+++ ....+.++.+.+-.-+|||-+.|.+++ ||. +.+.|..-+.++|.+||
T Consensus 6 Vlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv~d~~ei~~ygVmstPalvI--dg~-vv~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 6 IYGTGCANCQMLEKNAREAVKELG-IDAEFEKIKEMDQILEAGLTALPGLAV--DGE-LKIMGRVASKEEIKKIL 76 (77)
T ss_dssp EECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEECSHHHHHHHTCSSSSCEEE--TTE-EEECSSCCCHHHHHHHC
T ss_pred EeCCCCccHHHHHHHHHHHHHHcC-CceEEEEeCCHHHHHHcCCcCCCEEEE--CCE-EEEEecCCCHHHHHHHh
Confidence 347899999999999999988863 346667787765556899999999887 444 55678765667888886
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=9.8e-05 Score=57.20 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe----------------------------------------
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM---------------------------------------- 143 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---------------------------------------- 143 (346)
.+.+++.|+.+.|++|+++.|.+.++.... ..+.+...
T Consensus 26 ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (156)
T d1eeja1 26 EKHVITVFTDITCGYCHKLHEQMADYNALG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC 103 (156)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHTT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhhccC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhh
Confidence 367899999999999999999988875431 11222110
Q ss_pred C-----ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhhc
Q psy160 144 A-----DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLITQ 188 (346)
Q Consensus 144 ~-----~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~~ 188 (346)
+ +..+++++||++.||++ +.+|+ .+.|.++.+ .|.++|.+.
T Consensus 104 ~~~i~~~~~la~~lgv~GTPt~~-~~nG~--~v~G~~~~e-~l~~~i~~~ 149 (156)
T d1eeja1 104 DVDIADHYALGVQLGVSGTPAVV-LSNGT--LVPGYQPPK-EMKEFLDEH 149 (156)
T ss_dssp SCCHHHHHHHHHHHTCCSSSEEE-CTTSC--EEESCCCHH-HHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCcCCCEEE-EeCCe--EecCCCCHH-HHHHHHHHH
Confidence 1 45688999999999965 45665 456887745 788888764
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=0.00036 Score=53.85 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=50.0
Q ss_pred HHHHHhcCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------C-ChhhHHh
Q psy160 97 LDKLLEENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------A-DPRYARK 151 (346)
Q Consensus 97 ~~~~~~~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------~-~~~l~~~ 151 (346)
+.++..+++.+++.|| +.||+.|...++.+.+...++... ..++.+ | +.++++.
T Consensus 26 l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ 104 (156)
T d2a4va1 26 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGL 104 (156)
T ss_dssp HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHH
T ss_pred eHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeeccchhhhHHhhhcccCccceeccchHHHHHHH
Confidence 4445556566666667 789999999999999999998543 222221 2 4568888
Q ss_pred hCCCCcc------eEEEEecCC-cceecC
Q psy160 152 WGVTKLP------AVVYFRHRF-PSIYRG 173 (346)
Q Consensus 152 ~~i~~~P------tl~~~~~g~-~~~y~g 173 (346)
||+...| +.++..+|+ .+.|.|
T Consensus 105 ygv~~~~~~~~~r~~~i~~dg~i~~~~~~ 133 (156)
T d2a4va1 105 LGAKKTPLSGSIRSHFIFVDGKLKFKRVK 133 (156)
T ss_dssp HTCBSSSSSCBCCEEEEEETTEEEEEEES
T ss_pred cCCCccccCCeeEEEEEEECCeEEEEEEE
Confidence 8887666 445556666 344444
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.36 E-value=0.00061 Score=50.93 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=62.9
Q ss_pred CcEEEccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCC--ccccEEE
Q psy160 192 DRIELITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSI--KTFPALV 266 (346)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i--~~~Pti~ 266 (346)
+.+..++.+++..+.+...+.++.|+... .....+...+.++|+++++ ++.|+.+ ......+.||+ ..+|.++
T Consensus 6 PLv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~-ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~ 83 (133)
T d2djka1 6 PLIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRG-VINFGTIDAKAFGAHAGNLNLKTDKFPAFA 83 (133)
T ss_dssp CCSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT-TSEEEEECTTTTGGGTTTTTCCSSSSSEEE
T ss_pred CceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC-ceEEEEEeHHHhHHHHHHhcCCcccCCcEE
Confidence 36778999999999998889888887754 3567889999999999997 7999988 44566777888 4689999
Q ss_pred EEeC
Q psy160 267 YFRN 270 (346)
Q Consensus 267 ~~~~ 270 (346)
++..
T Consensus 84 i~~~ 87 (133)
T d2djka1 84 IQEV 87 (133)
T ss_dssp EECT
T ss_pred EEEc
Confidence 8853
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.00044 Score=53.32 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHhccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 202 LETMVEETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 202 ~~~~~~~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+.++...++.+++.|| +.||+.|....+.+.+...+++. ...++.+
T Consensus 26 l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~i 72 (156)
T d2a4va1 26 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGL 72 (156)
T ss_dssp HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEE
T ss_pred eHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeee
Confidence 4445555566666666 78999999999999999998875 4444444
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.32 E-value=0.00073 Score=44.93 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=55.6
Q ss_pred EEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeCChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHH
Q psy160 109 VFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWL 185 (346)
Q Consensus 109 v~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi 185 (346)
|..+.+.|+.|.++....++++.++ +....+.++++..-..+|||-+.|++++ +|+ ..+.|...+.++|.+|+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~-gi~a~v~kv~d~~ei~~ygVmstPalvI--dg~-vv~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKEL-GIDAEFEKIKEMDQILEAGLTALPGLAV--DGE-LKIMGRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHT-TCCEEEEEECSHHHHHHHTCSSSSCEEE--TTE-EEECSSCCCHHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHc-CCceEEEEeCCHHHHHHcCCcCCCEEEE--CCE-EEEEecCCCHHHHHHHh
Confidence 3445899999999999999999886 4557777776544445799999999997 453 56778765566898886
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.31 E-value=0.00022 Score=54.71 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=55.4
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------------------------
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM----------------------------------------- 143 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~----------------------------------------- 143 (346)
+..++.|+.+.||+|+++.+++.++.+... .+.+...
T Consensus 27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~ 104 (150)
T d1t3ba1 27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGI--TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP 104 (150)
T ss_dssp SEEEEEEECTTCHHHHHHHTTHHHHHHTTE--EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHhccCc--eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence 567899999999999999999988875421 1222210
Q ss_pred ----CChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHhh
Q psy160 144 ----ADPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLIT 187 (346)
Q Consensus 144 ----~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~~ 187 (346)
.+..+++++||++.||+++ .+|+ ...|....+ .|.+.+.+
T Consensus 105 ~~i~~~~~la~~lGv~GTPt~~~-~nG~--~i~G~~~~~-~l~~~l~~ 148 (150)
T d1t3ba1 105 NIVKKHYELGIQFGVRGTPSIVT-STGE--LIGGYLKPA-DLLRALEE 148 (150)
T ss_dssp SHHHHHHHHHHHHTCCSSCEEEC-TTSC--CCCSCCCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCCCCEEEE-cCCc--EecCCCCHH-HHHHHHHh
Confidence 0456889999999999875 4565 457877744 78887765
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.27 E-value=0.00022 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhh
Q psy160 1 MYINDENCPECDDILEELEHIDGDA 25 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~ 25 (346)
++|+...||||+++.+++.++...+
T Consensus 29 ~ef~d~~Cp~C~~~~~~~~~~~~~~ 53 (172)
T d1z6ma1 29 IEFINVRCPYCRKWFEESEELLAQS 53 (172)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHhhhhhhh
Confidence 4688999999999999999988776
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00011 Score=57.01 Aligned_cols=74 Identities=11% Similarity=0.247 Sum_probs=51.1
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc---------------------------------------------
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKI--------------------------------------------- 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--------------------------------------------- 35 (346)
|.|+.+.||+|+++.|.++++.+.- ..+.+...
T Consensus 31 v~FsD~~CpyC~~~~~~l~~~~~~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (156)
T d1eeja1 31 TVFTDITCGYCHKLHEQMADYNALG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIA 108 (156)
T ss_dssp EEEECTTCHHHHHHHTTHHHHHHTT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCCHH
T ss_pred EEEeCCCCHHHHHHHHHHHHhhccC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcchHH
Confidence 4799999999999999988875421 11111111
Q ss_pred CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhcc
Q psy160 36 SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 36 ~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
.+.+++.++||++.||++ +.+|.. +.|.+.. +.+.++|.+.
T Consensus 109 ~~~~la~~lgv~GTPt~~-~~nG~~--v~G~~~~-e~l~~~i~~~ 149 (156)
T d1eeja1 109 DHYALGVQLGVSGTPAVV-LSNGTL--VPGYQPP-KEMKEFLDEH 149 (156)
T ss_dssp HHHHHHHHHTCCSSSEEE-CTTSCE--EESCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCCEEE-EeCCeE--ecCCCCH-HHHHHHHHHH
Confidence 146788999999999954 566754 4686665 5788777653
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.19 E-value=0.00068 Score=52.80 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=25.7
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
+..++.|....|+||.++.+.+.++.+.+
T Consensus 25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~ 53 (172)
T d1z6ma1 25 PVKMIEFINVRCPYCRKWFEESEELLAQS 53 (172)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhhhhhh
Confidence 45699999999999999999999887776
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.00056 Score=53.44 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=48.0
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe---------------------------C-ChhhHHhhC
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM---------------------------A-DPRYARKWG 153 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~---------------------------~-~~~l~~~~~ 153 (346)
.++.+++.|| +.||+.|..-++.+.+.+++++..++.++.+ | +.++++.||
T Consensus 43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg 122 (169)
T d2bmxa1 43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 122 (169)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence 3466777787 8999999999999999999996655544432 1 456888888
Q ss_pred C-----CCcceEEEEe-cCC
Q psy160 154 V-----TKLPAVVYFR-HRF 167 (346)
Q Consensus 154 i-----~~~Ptl~~~~-~g~ 167 (346)
| ...|+.+++. +|.
T Consensus 123 v~~~~~~~~r~~fvID~~G~ 142 (169)
T d2bmxa1 123 VLNADGVADRVTFIVDPNNE 142 (169)
T ss_dssp CBCTTSSBCEEEEEECTTSB
T ss_pred CCccCCccceeEEEEcCCCE
Confidence 8 5667777775 354
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.00073 Score=52.76 Aligned_cols=40 Identities=18% Similarity=0.416 Sum_probs=33.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.|| +.||+.|....+.+.++..+++..++.++.+
T Consensus 44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~i 84 (169)
T d2bmxa1 44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGV 84 (169)
T ss_dssp TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEecCCCCccccccccccccccccccccCcceeec
Confidence 467788888 8999999999999999999997656666666
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00025 Score=54.46 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=50.6
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhhcccCCeEEEc---------------------------------------------
Q psy160 1 MYINDENCPECDDILEELEHIDGDADQYGIDMVKI--------------------------------------------- 35 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~--------------------------------------------- 35 (346)
+.|+.+.||+|+++.++++++.+.- ..+.+.-.
T Consensus 31 ~~FsD~~CPyC~~~~~~l~~l~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~i~ 108 (150)
T d1t3ba1 31 TVFMDITCHYCHLLHQQLKEYNDLG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIVK 108 (150)
T ss_dssp EEEECTTCHHHHHHHTTHHHHHHTT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSHHH
T ss_pred EEEECCCCHHHHHHhHHHHHHhccC--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhhHHH
Confidence 4699999999999999998886532 11111111
Q ss_pred CChHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHHHHHhcc
Q psy160 36 SDTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKILTWLTSQ 80 (346)
Q Consensus 36 ~~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~~~i~~~ 80 (346)
.+.++++++||++.||+++ .+|.. ..|.... +.+.+.|.+.
T Consensus 109 ~~~~la~~lGv~GTPt~~~-~nG~~--i~G~~~~-~~l~~~l~~~ 149 (150)
T d1t3ba1 109 KHYELGIQFGVRGTPSIVT-STGEL--IGGYLKP-ADLLRALEET 149 (150)
T ss_dssp HHHHHHHHHTCCSSCEEEC-TTSCC--CCSCCCH-HHHHHHHHHC
T ss_pred HHHHHHHhcCcCCCCEEEE-cCCcE--ecCCCCH-HHHHHHHHhh
Confidence 1457889999999998664 45653 4676555 4777777643
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0013 Score=51.23 Aligned_cols=73 Identities=8% Similarity=0.108 Sum_probs=51.1
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------------------------
Q psy160 105 EFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKM----------------------------------------- 143 (346)
Q Consensus 105 ~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~----------------------------------------- 143 (346)
+..++.|+.+.|++|+++.++++++.+.. +..+.+...
T Consensus 37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 115 (169)
T d1v58a1 37 PVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN 115 (169)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccch
Confidence 35689999999999999999998876543 111222211
Q ss_pred ----------CChhhHHhhCCCCcceEEEEec-CCcceecCCcchh
Q psy160 144 ----------ADPRYARKWGVTKLPAVVYFRH-RFPSIYRGDLSEE 178 (346)
Q Consensus 144 ----------~~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~ 178 (346)
.+..+++++||++.||+++... |......|....+
T Consensus 116 ~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~ 161 (169)
T d1v58a1 116 VSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQK 161 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 0445788999999999887664 4455578876633
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.0027 Score=46.74 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred EccHHHHHHHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cChhhhhhCCCc-cccEEEEEeCC
Q psy160 196 LITRVMLETMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDPQLAKRYSIK-TFPALVYFRNG 271 (346)
Q Consensus 196 ~l~~~~~~~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~~~~~~~~i~-~~Pti~~~~~g 271 (346)
+++.+++..++++..|.++.|+.+. ..-....+.+.++|+++++ ++.|+.+ ......+.||+. ..|.+++....
T Consensus 4 ei~~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkg-ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~ 81 (125)
T d2b5ea3 4 EIDGSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRG-LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT 81 (125)
T ss_dssp BCCHHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTT-TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred ccCHHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcC-eeEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence 5788999999998999999898864 3345889999999999998 7988888 445677888885 48999888644
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0026 Score=50.75 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=50.5
Q ss_pred ChHHHHhcCCCCCCeEEEEeCCceeeecCCCCC---------HHHHHHHHhccCCc------cccCceeecCHHHHHHHH
Q psy160 37 DTEAAAKYNIINLPSLVYFRKQVPLLYDGDLFD---------EEKILTWLTSQDVF------EIKNEIEEVNRRMLDKLL 101 (346)
Q Consensus 37 ~~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~---------~~~i~~~i~~~~~p------~~~~~v~~l~~~~~~~~~ 101 (346)
+.+...++||++.||+++ ||....-.+.+.+ .-+++++|.+.... .....-..++.-
T Consensus 39 ~~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p------ 110 (195)
T d1un2a_ 39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKP------ 110 (195)
T ss_dssp HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSC------
T ss_pred HHHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHHhCcccccCCCCCCCCcceECCCC------
Confidence 457888999999999766 5554432222211 12566788654332 111122223221
Q ss_pred hcCCcEEEEEECCCChhHHHHHHHHHH
Q psy160 102 EENEFVTVFFYETDHKDSVKVLERLEK 128 (346)
Q Consensus 102 ~~~~~~lv~F~~~~C~~c~~~~~~~~~ 128 (346)
..+++-++.|++-+|+||.++.|.+..
T Consensus 111 ~~~~~~VvEffsy~Cp~C~~~e~~l~~ 137 (195)
T d1un2a_ 111 VAGAPQVLEFFSFFCPHCYQFEEVLHI 137 (195)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTSCH
T ss_pred CCCCceEEEEEecCCccccccchhhhH
Confidence 134567999999999999999997753
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0035 Score=48.66 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=50.1
Q ss_pred ceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-----------------------------------------
Q psy160 210 QYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----------------------------------------- 248 (346)
Q Consensus 210 ~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----------------------------------------- 248 (346)
+..++.|+.+.|++|+.+.+.++++.+.. ++.+..+
T Consensus 37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (169)
T d1v58a1 37 PVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 113 (169)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence 46788899999999999999998887653 2333322
Q ss_pred ------------cChhhhhhCCCccccEEEEEe-CCeEEEeecCcc
Q psy160 249 ------------QDPQLAKRYSIKTFPALVYFR-NGNPLIFEGENK 281 (346)
Q Consensus 249 ------------~~~~~~~~~~i~~~Pti~~~~-~g~~~~y~g~~~ 281 (346)
.+..+++++||++.|++++.. +|+.....|-..
T Consensus 114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~ 159 (169)
T d1v58a1 114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPD 159 (169)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCC
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCC
Confidence 123456678999999988865 566666777654
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.61 E-value=0.004 Score=48.44 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=27.1
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~ 133 (346)
++++.+|.|....|+||+++.+.+..+.+.+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~ 47 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQL 47 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhc
Confidence 4467899999999999999999998887776
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=96.53 E-value=0.0014 Score=50.96 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred cCCcEEEEEECC-CChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFYET-DHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~~~-~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.++.+++.||.. ||+.|..-++.++++++++...++.++-
T Consensus 30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~ 70 (166)
T d1we0a1 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYS 70 (166)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEe
Confidence 356788889966 9999999999999999999665554443
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.44 E-value=0.003 Score=41.69 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=37.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEEEecCC
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.|..+||++|.+....+.+. +.......++ .....+.+|.+.+|++.+ +|+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~ 59 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE 59 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE
T ss_pred EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5789999999999988777653 3335555555 233456779999998764 554
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=96.43 E-value=0.0031 Score=48.90 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=33.1
Q ss_pred cceEEEEEEcC-CChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFYKL-NCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~~~-~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.++|.||.. ||+.|....+.+.++..+++..++.++.+
T Consensus 31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~I 71 (166)
T d1we0a1 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSV 71 (166)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEec
Confidence 45788889965 99999999999999999997656776666
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0048 Score=41.87 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=47.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-------ChhhHHhh--CCCCcceEEEEecCCcceecCCcchh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-------DPRYARKW--GVTKLPAVVYFRHRFPSIYRGDLSEE 178 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-------~~~l~~~~--~i~~~Ptl~~~~~g~~~~y~g~~~~~ 178 (346)
+|.|..++|++|.+....+.++...+.+ +.+..++ ...+.+.. +++.+|.|.+ +|+ +-|..+
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~---~IGG~~-- 73 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ---HIGGYT-- 73 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE---EEESSH--
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE---EEECHH--
Confidence 6789999999999999999888776654 5555443 22333333 3567998765 553 446654
Q ss_pred HHHHHHHhhc
Q psy160 179 EEVLQWLITQ 188 (346)
Q Consensus 179 ~~i~~fi~~~ 188 (346)
++.++++++
T Consensus 74 -el~~~~~~~ 82 (85)
T d1egoa_ 74 -DFAAWVKEN 82 (85)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHhc
Confidence 577776654
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.00083 Score=53.76 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=53.8
Q ss_pred hhhHHhhCCCCcceEEEEecCCcce-ecC--Cc------chhHHHHHHHhhccccCcEEEc-cHHHHHHH--HhccceEE
Q psy160 146 PRYARKWGVTKLPAVVYFRHRFPSI-YRG--DL------SEEEEVLQWLITQKTEDRIELI-TRVMLETM--VEETQYLA 213 (346)
Q Consensus 146 ~~l~~~~~i~~~Ptl~~~~~g~~~~-y~g--~~------~~~~~i~~fi~~~~~~~~v~~l-~~~~~~~~--~~~~~~~l 213 (346)
..+++++||++.||+++ ||+... -.+ .. ...-++++++.+....+.-... -+.++..+ -..+++-+
T Consensus 40 ~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p~~~~~~V 117 (195)
T d1un2a_ 40 EKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQV 117 (195)
T ss_dssp HHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCCTTCCSE
T ss_pred HHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHHhCcccccCCCCCCCCcceECCCCCCCCceE
Confidence 46788999999999876 666222 111 11 1122566677554321100000 00111000 01346778
Q ss_pred EEEEcCCChhhHHHHHHHH---HHHhhcCcCceEEEEE
Q psy160 214 VYFYKLNCNICDQILEGLE---KVDDECDIYGIHMVKI 248 (346)
Q Consensus 214 v~F~~~~c~~c~~~~~~~~---~la~~~~~~~i~~~~i 248 (346)
+.|++-+|++|..+.|.+. ++.+.+.+ ++.|...
T Consensus 118 vEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~ 154 (195)
T d1un2a_ 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKY 154 (195)
T ss_dssp EEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEE
T ss_pred EEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEE
Confidence 9999999999999999775 55555553 5555543
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=96.39 E-value=0.0018 Score=50.33 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=33.0
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.++++++.|| +.||+.|..-.+.+.+..+++.+.++.++.
T Consensus 32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~ 72 (167)
T d1e2ya_ 32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVIS 72 (167)
T ss_dssp TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEe
Confidence 4567888898 999999999999999999999665555443
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.36 E-value=0.0042 Score=44.10 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHhcCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC---Ch-----hhHHhhCCCCcceEEEEecCC
Q psy160 98 DKLLEENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA---DP-----RYARKWGVTKLPAVVYFRHRF 167 (346)
Q Consensus 98 ~~~~~~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~---~~-----~l~~~~~i~~~Ptl~~~~~g~ 167 (346)
++.+++++ ++.|..+||++|.+....|.++.-.. ..+.+..+| +. .+.+.-|.+.+|+|.+ +|+
T Consensus 6 ~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~--~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~ 77 (105)
T d1ktea_ 6 NSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE--GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE 77 (105)
T ss_dssp HHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT--TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred HHHhccCC--EEEEECCCCchHHHHHHHHHHhCCcc--ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence 44455544 67999999999999888887754332 235566654 11 2334557888998855 553
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.0038 Score=47.47 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.4
Q ss_pred ceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 210 QYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 210 ~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+++++.|| +.||+.|....+.+.++.+++...++.+..+
T Consensus 30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~v 69 (153)
T d1xvwa1 30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAI 69 (153)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEE
T ss_pred CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccc
Confidence 44555544 8899999999999999998887656777766
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=96.28 E-value=0.003 Score=48.90 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=34.3
Q ss_pred ccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..++++|.|| +.||+.|....+.+.++..++...++.++.+
T Consensus 32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~i 73 (167)
T d1e2ya_ 32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISC 73 (167)
T ss_dssp TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEee
Confidence 3457888998 9999999999999999999987656766666
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.25 E-value=0.0039 Score=48.51 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.3
Q ss_pred CeecCCCChhhHHHHHHHHHHHhhh
Q psy160 1 MYINDENCPECDDILEELEHIDGDA 25 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~~~ 25 (346)
|+|....|+||+++.+.+.++.+.+
T Consensus 23 vef~d~~Cp~C~~~~~~~~~l~~~~ 47 (181)
T d1beda_ 23 SEFFSFYCPHCNTFEPIIAQLKQQL 47 (181)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHTS
T ss_pred EEEECCCCccchhhhhhhhhHhhhc
Confidence 5789999999999999999887776
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.005 Score=40.79 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=35.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-Chh---hHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPR---YARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~---l~~~~~i~~~Ptl~~ 162 (346)
++.|..+||++|.+....+.+.. .......++ +++ ..+..|.+.+|++++
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~-----i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i 56 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRG-----FDFEMINVDRVPEAAEALRAQGFRQLPVVIA 56 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHhcC-----ceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence 57889999999999887776643 234455554 232 335679999999876
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=96.23 E-value=0.014 Score=47.73 Aligned_cols=135 Identities=11% Similarity=0.134 Sum_probs=80.1
Q ss_pred hcCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEe-----------------------------C-ChhhHH
Q psy160 102 EENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKM-----------------------------A-DPRYAR 150 (346)
Q Consensus 102 ~~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~-----------------------------~-~~~l~~ 150 (346)
..++.+++.|| +.||+.|..-++.+.+.+.++.+.++.++-+ | ..++++
T Consensus 27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak 106 (237)
T d2zcta1 27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR 106 (237)
T ss_dssp TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence 35566677777 8999999999999999998886555544422 1 456889
Q ss_pred hhCC-------CCcceEEEEec-CCc-c--eecC--CcchhHHHHHHHhhcc-------------cc------CcEE--E
Q psy160 151 KWGV-------TKLPAVVYFRH-RFP-S--IYRG--DLSEEEEVLQWLITQK-------------TE------DRIE--L 196 (346)
Q Consensus 151 ~~~i-------~~~Ptl~~~~~-g~~-~--~y~g--~~~~~~~i~~fi~~~~-------------~~------~~v~--~ 196 (346)
.||+ ...|+++++.. |.. . .|.. .++ .+++++.++... .| .++. .
T Consensus 107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~-~dEiLr~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~~~~~ 185 (237)
T d2zcta1 107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRL-VDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 185 (237)
T ss_dssp HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCC-HHHHHHHHHHHHHHHHHTCBBCTTTTSBTTTBTCEECCCC
T ss_pred HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCC-HHHHHHHHHHHhhhccCCcCCcCCCCCCCCCCCCEEeCCC
Confidence 9998 45688888854 542 1 1211 234 447888886532 11 1221 3
Q ss_pred ccHHHHHHHHhccceEEEE----EEcCCCh-hhHHHHHHHHHHHhh
Q psy160 197 ITRVMLETMVEETQYLAVY----FYKLNCN-ICDQILEGLEKVDDE 237 (346)
Q Consensus 197 l~~~~~~~~~~~~~~~lv~----F~~~~c~-~c~~~~~~~~~la~~ 237 (346)
++.++..+...+...-.+. +-.++-. .....++.++..+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T d2zcta1 186 TTEDQARARMESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAEK 231 (237)
T ss_dssp CSHHHHHHHHHHTCSEEEETTEEEECCSCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHhccCCCeeeeeeeeeeccCcccccchhhHHHHHhcccc
Confidence 4667777766544333332 2222221 234556666666554
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.07 E-value=0.0083 Score=45.45 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=29.0
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 105 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
+++++.|| +.||+.|..-.+.+.+...++...++.++.
T Consensus 30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~ 68 (153)
T d1xvwa1 30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALA 68 (153)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEE
T ss_pred CcEEEEecccccccchhhhhhhhhhhhhhhccccccccc
Confidence 44555544 789999999999999999888666665554
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0056 Score=47.20 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=29.2
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
.++++++.|| +.||+.|...++.+++++.++.+..+..+.
T Consensus 43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is 83 (164)
T d1qxha_ 43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCIS 83 (164)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEE
Confidence 3567777777 669999999999999998876543333333
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0032 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.4
Q ss_pred CeecCCCChhhHHHHHHHHHHHh
Q psy160 1 MYINDENCPECDDILEELEHIDG 23 (346)
Q Consensus 1 v~Fy~~~C~~c~~~~~~~~~~a~ 23 (346)
|+|++-.||||+++.+.+..+.+
T Consensus 23 vEffdy~Cp~C~~~~~~l~~~~~ 45 (188)
T d1fvka_ 23 LEFFSFFCPHCYQFEEVLHISDN 45 (188)
T ss_dssp EEEECTTCHHHHHHHHTTCHHHH
T ss_pred EEEECCCChhhHHHHHHHHHHHH
Confidence 57889999999999987754444
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0049 Score=48.52 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=36.0
Q ss_pred ccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
..+++||.++|+||++|....+.+++|.++|++.++.+..+
T Consensus 23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~f 63 (184)
T d2f8aa1 23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGF 63 (184)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEe
Confidence 46899999999999999998999999999998656777766
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.012 Score=45.14 Aligned_cols=38 Identities=11% Similarity=0.326 Sum_probs=29.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....+.+.+++.++. ++.++.|
T Consensus 44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~I 82 (164)
T d1qxha_ 44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCI 82 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEE
T ss_pred CCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeE
Confidence 457777777 6799999999999999988775 4555544
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.78 E-value=0.0087 Score=47.47 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=32.2
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++.+++.|| +.||+.|..-++.++++.+++...++.++-
T Consensus 33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~Vlg 72 (194)
T d1uula_ 33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLA 72 (194)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEE
Confidence 567788888 889999999999999999999665655553
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=95.71 E-value=0.065 Score=35.02 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=46.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-ChhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHHHHHh
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-DPRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVLQWLI 186 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~~fi~ 186 (346)
+.+|+.++|+.|......+.+. .+..+..++++ ++.+..+|+.. .|.|.+ .++... ..+++ ++.+.+|+.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~~----~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~-~~~~~l--~w~fd-~~~l~~~L~ 72 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQA----RAGAFFSVFIDDDAALESAYGLR-VPVLRD-PMGREL--DWPFD-APRLRAWLD 72 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHHT----TCCCEEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE--ESCCC-HHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhc----cCCcEEEEEccCCHHHHHHhCCe-eeEEEE-CCeeEE--cCccC-HHHHHHHHh
Confidence 6789999999998776554331 23345555665 77899999976 897753 233221 22344 458888876
Q ss_pred h
Q psy160 187 T 187 (346)
Q Consensus 187 ~ 187 (346)
.
T Consensus 73 ~ 73 (75)
T d1ttza_ 73 A 73 (75)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.62 E-value=0.016 Score=38.85 Aligned_cols=66 Identities=8% Similarity=0.108 Sum_probs=42.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEEEecCCcceecCCcchhHHHH
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVYFRHRFPSIYRGDLSEEEEVL 182 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~~i~ 182 (346)
+..|..+||++|.+....+++.. ..+....++ + ..+.+..|.+.+|.+.+ +|+ +-|..+ ++.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~~-----i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~---~IGG~~---el~ 69 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSKG-----VSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQ---HIGGYD---DLY 69 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHT-----CCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTE---EEESHH---HHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcC-----CCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCE---EEecHH---HHH
Confidence 56789999999998887776543 235555555 2 23455678999998754 553 334443 455
Q ss_pred HHHh
Q psy160 183 QWLI 186 (346)
Q Consensus 183 ~fi~ 186 (346)
+...
T Consensus 70 ~l~~ 73 (82)
T d1fova_ 70 ALDA 73 (82)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=95.61 E-value=0.023 Score=46.33 Aligned_cols=65 Identities=9% Similarity=0.291 Sum_probs=48.0
Q ss_pred ccceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE------------------------------cChhhhhh
Q psy160 208 ETQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI------------------------------QDPQLAKR 256 (346)
Q Consensus 208 ~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i------------------------------~~~~~~~~ 256 (346)
..+.+++.|| +.||+.|....+.+.++..+++..++.++.+ .+..+++.
T Consensus 28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~ 107 (237)
T d2zcta1 28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR 107 (237)
T ss_dssp TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence 4567777788 8999999999999999888887556665554 13457888
Q ss_pred CCC-------ccccEEEEE-eCCe
Q psy160 257 YSI-------KTFPALVYF-RNGN 272 (346)
Q Consensus 257 ~~i-------~~~Pti~~~-~~g~ 272 (346)
||+ ...|++.++ ++|+
T Consensus 108 yGv~~~~~~~~~~RatFIIDpdG~ 131 (237)
T d2zcta1 108 LGLLHAESATHTVRGVFIVDARGV 131 (237)
T ss_dssp TTCC----CCTTCCEEEEECTTSB
T ss_pred cCCccccccccceeeeEEECCCCE
Confidence 887 356888777 4565
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.61 E-value=0.013 Score=46.32 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=34.0
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.+++.|| +.||+.|......+.++..++...++.++.+
T Consensus 33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgI 73 (194)
T d1uula_ 33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLAC 73 (194)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEE
Confidence 467888899 8999999999999999999987667777766
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=95.59 E-value=0.0099 Score=46.04 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=32.3
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
++++++.|| +.||+.|....+.+.+...++++.++.++.+
T Consensus 33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgi 73 (170)
T d1zofa1 33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGV 73 (170)
T ss_dssp SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEE
T ss_pred CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecc
Confidence 457888888 8999999988889998888886556666665
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=95.44 E-value=0.0095 Score=39.08 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=37.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cC---hhhhhhCCCccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QD---PQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~---~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
++.|..+||++|.+....+++..- ......+ .+ .+..+.+|.+++|.+. .+|+.+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i-----~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~i 61 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGL-----AYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEHW 61 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTC-----CCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCC-----ceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 466888999999998888876532 2334444 23 3345677899999874 477643
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=95.41 E-value=0.02 Score=37.42 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=34.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEEeC----ChhhHHhhCCCCcceEEE
Q psy160 108 TVFFYETDHKDSVKVLERLEKIDGETDNMDITFVKMA----DPRYARKWGVTKLPAVVY 162 (346)
Q Consensus 108 lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~----~~~l~~~~~i~~~Ptl~~ 162 (346)
++.|..++|++|++....+.+..- ......++ ...+.+..+...+|.+.+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i-----~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i 60 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGL-----SFEEIILGHDATIVSVRAVSGRTTVPQVFI 60 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTC-----CCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-----CeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence 688999999999998887776532 24444444 223445678889998754
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.29 E-value=0.011 Score=41.90 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=44.5
Q ss_pred HHHhccceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE---cCh-----hhhhhCCCccccEEEEEeCCeEEE
Q psy160 204 TMVEETQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI---QDP-----QLAKRYSIKTFPALVYFRNGNPLI 275 (346)
Q Consensus 204 ~~~~~~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i---~~~-----~~~~~~~i~~~Pti~~~~~g~~~~ 275 (346)
+.+++++ ++.|..+||++|......|.++.-.+. .+.+..+ .+. .+.+..+.+.+|.+ |-+|+.+
T Consensus 7 ~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~--~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqI--fi~g~~I- 79 (105)
T d1ktea_ 7 SKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG--LLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECI- 79 (105)
T ss_dssp HHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT--SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEE-
T ss_pred HHhccCC--EEEEECCCCchHHHHHHHHHHhCCccc--eeeeeecccccccHHHHHHHhhccCCCcCcEE--EECCEEE-
Confidence 3444444 567899999999999999988765543 4566665 122 12333467788977 4577644
Q ss_pred eecCcc
Q psy160 276 FEGENK 281 (346)
Q Consensus 276 y~g~~~ 281 (346)
|+.+
T Consensus 80 --GG~~ 83 (105)
T d1ktea_ 80 --GGCT 83 (105)
T ss_dssp --ESHH
T ss_pred --ecHH
Confidence 6653
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.03 Score=37.68 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=42.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-------cChhhhhhC--CCccccEEEEEeCCeEEEeecCcc
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-------QDPQLAKRY--SIKTFPALVYFRNGNPLIFEGENK 281 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-------~~~~~~~~~--~i~~~Pti~~~~~g~~~~y~g~~~ 281 (346)
+|.|..++|++|.+....+.+++..+++ +.+..+ ....+.+.. +++++|.+. -+|+.+ |+.+
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIf--i~g~~I---GG~~ 73 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHI---GGYT 73 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEE---ESSH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEE--ECCEEE---ECHH
Confidence 5678899999999999999999888774 555554 123333333 356799964 477643 6664
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.01 Score=46.67 Aligned_cols=40 Identities=3% Similarity=0.057 Sum_probs=33.8
Q ss_pred cCCcEEEEEECCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 103 ENEFVTVFFYETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
+++++||.++|+||+.|.+-.+.++++.++++..++.+..
T Consensus 23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~ 62 (184)
T d2f8aa1 23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLG 62 (184)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEE
Confidence 5689999999999999999899999999998665555443
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.012 Score=45.93 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=20.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHH
Q psy160 104 NEFVTVFFYETDHKDSVKVLERLEKI 129 (346)
Q Consensus 104 ~~~~lv~F~~~~C~~c~~~~~~~~~~ 129 (346)
+.+.+|.|++-.|+||+++.+.+..+
T Consensus 18 ~~~~VvEffdy~Cp~C~~~~~~l~~~ 43 (188)
T d1fvka_ 18 GAPQVLEFFSFFCPHCYQFEEVLHIS 43 (188)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTTCHH
T ss_pred CCCEEEEEECCCChhhHHHHHHHHHH
Confidence 35668999999999999999876433
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.12 E-value=0.028 Score=42.74 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=32.9
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....+.+.++..++...+..+..|
T Consensus 26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigI 66 (158)
T d1zyea1 26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAV 66 (158)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEec
Confidence 467889999 8899999999999999998886556666655
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.014 Score=38.48 Aligned_cols=54 Identities=11% Similarity=0.356 Sum_probs=36.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChh---hhhhCCCccccEEEEEeCCeE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQ---LAKRYSIKTFPALVYFRNGNP 273 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~---~~~~~~i~~~Pti~~~~~g~~ 273 (346)
++.|..+||++|......|.+..-. .....+ .+++ ..+..|.+++|.+++ +|+.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~i~-----y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~ 60 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRGFD-----FEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS 60 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCC-----CEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE
T ss_pred EEEEeCCCCccHHHHHHHHHhcCce-----eEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 4567889999999888888776422 233344 3333 345568999999765 6654
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.93 E-value=0.035 Score=43.47 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.8
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
.++.+++.|| +.||+.|..-++.+++..+++...++.++
T Consensus 29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~ 68 (186)
T d1n8ja_ 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVY 68 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEE
Confidence 4467788888 77899999999999999999865554444
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.77 E-value=0.03 Score=42.54 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
++++++.|| +.||+.|..-++.+++...++.+.+..++
T Consensus 26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vi 64 (158)
T d1zyea1 26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVV 64 (158)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEE
Confidence 567889999 78999999999999999888855444333
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=94.71 E-value=0.012 Score=45.52 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 105 EFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 105 ~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
+++++.|| +.||+.|..-.+.+++...++.+.++.++
T Consensus 34 ~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vv 71 (170)
T d1zofa1 34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVI 71 (170)
T ss_dssp SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEE
T ss_pred CEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEe
Confidence 45777788 88999999999999999988865555444
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.52 E-value=0.024 Score=43.37 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.3
Q ss_pred cCCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.++.+++.|| +.||+.|...++.+.+...++++..+..+..+
T Consensus 41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d 83 (163)
T d1psqa_ 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMD 83 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESS
T ss_pred CCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEec
Confidence 4467777787 67999999999999888877754334344443
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=94.19 E-value=0.0075 Score=40.52 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=38.6
Q ss_pred eecCCCChhhHHHHHHHHHHHhhhcccCCeE--EEcCC-----hHHHHhcCCCCCCeEEEEeCCceeeecCCCCCHHHHH
Q psy160 2 YINDENCPECDDILEELEHIDGDADQYGIDM--VKISD-----TEAAAKYNIINLPSLVYFRKQVPLLYDGDLFDEEKIL 74 (346)
Q Consensus 2 ~Fy~~~C~~c~~~~~~~~~~a~~~~~~~i~~--~~~~~-----~~~c~~~~i~~~Ptl~~f~~~~~~~y~G~~~~~~~i~ 74 (346)
.|..+||++|++....|++. ||.+ ..+++ ..+-...|.+.+|++. -+|.. -|+. +++.
T Consensus 5 iys~~~Cp~C~~ak~~L~~~-------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~---IGG~---~el~ 69 (82)
T d1fova_ 5 IYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQH---IGGY---DDLY 69 (82)
T ss_dssp EEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEE---EESH---HHHH
T ss_pred EEeCCCCHhHHHHHHHHHHc-------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEE---EecH---HHHH
Confidence 57789999999887655543 4444 44442 2455667899999864 45553 2332 3555
Q ss_pred HHHhc
Q psy160 75 TWLTS 79 (346)
Q Consensus 75 ~~i~~ 79 (346)
++..+
T Consensus 70 ~l~~~ 74 (82)
T d1fova_ 70 ALDAR 74 (82)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55443
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.12 E-value=0.042 Score=35.79 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE----cChhhhhhCCCccccEEEEEeCCeEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI----QDPQLAKRYSIKTFPALVYFRNGNPL 274 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i----~~~~~~~~~~i~~~Pti~~~~~g~~~ 274 (346)
++.|..++|++|+++...|.+..-. .....+ ....+.+..+..++|.+ |-+|+.+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~-----~~~~~v~~~~~~~~~~~~~~~~tvP~i--~i~g~~I 65 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLS-----FEEIILGHDATIVSVRAVSGRTTVPQV--FIGGKHI 65 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCC-----CEEEETTTTCCHHHHHHHTCCSSSCEE--EETTEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC-----eEEEEccCcHHHHHHHHHhCCccCCEE--EECCEEE
Confidence 4678899999999998888876432 223333 12334456678889986 4467543
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.01 E-value=0.079 Score=41.34 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=31.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.+++.|| +.||+.|....+.+.+..++++..++.+..+
T Consensus 30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gI 70 (186)
T d1n8ja_ 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSV 70 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEec
Confidence 357888898 7788899999999999998887556666655
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=93.74 E-value=0.042 Score=42.28 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++++++.|| +.||+.|..-+..+++.+..+...++.++.
T Consensus 27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vig 66 (170)
T d2h01a1 27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLG 66 (170)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEec
Confidence 466788888 789999999999999999998666655554
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=93.43 E-value=0.074 Score=40.81 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=33.4
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
+++++|.|| +.||+.|......|.+..+.++..++.++.|
T Consensus 27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigI 67 (170)
T d2h01a1 27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGC 67 (170)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEE
T ss_pred CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecc
Confidence 467888898 7899999999999999988887656777766
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=93.16 E-value=0.02 Score=43.94 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=35.8
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEeCCh----hhHHhhCCCC
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKMADP----RYARKWGVTK 156 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~~~----~l~~~~~i~~ 156 (346)
.++++++.||. .||+.|..-++.|++...++++..+..+.+|.+ +.++++++..
T Consensus 41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~~~~ 99 (164)
T d1q98a_ 41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIEN 99 (164)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTT
T ss_pred CCcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhCCcc
Confidence 34677888884 478889999999999888886544444455533 3344444443
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.1 Score=41.10 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEEE
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFVK 142 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~~ 142 (346)
++.+++.|| +.||+.|..-+..+.+...++...++.++-
T Consensus 34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vig 73 (197)
T d1qmva_ 34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLG 73 (197)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEE
Confidence 466777788 889999999999999999999766655553
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.84 E-value=0.056 Score=41.16 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=28.9
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.++++|.|| +.||+.|....+.+.+...++++ ..++.|
T Consensus 42 gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~--~~vv~I 80 (163)
T d1psqa_ 42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN--TVVLTV 80 (163)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT--EEEEEE
T ss_pred CcEEEEEeccccccccchhhHHHHHHHHHhhcc--cceEEE
Confidence 457777777 67999999988999888887763 455555
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.16 Score=39.82 Aligned_cols=40 Identities=13% Similarity=0.376 Sum_probs=33.2
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+.+++.|| +.||+.|......+.++..+++..++.+..|
T Consensus 34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigI 74 (197)
T d1qmva_ 34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGV 74 (197)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEE
Confidence 457778888 8899999999999999999987667777766
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.32 Score=35.91 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred cCCcEEEEEECCCCh-hHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHK-DSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~-~c~~~~~~~~~~a~~~ 133 (346)
.++++||.|+.+||+ .|....+.+.++.+.+
T Consensus 19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~ 50 (160)
T d1wp0a1 19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEI 50 (160)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCccccccchHHHHHHHHHh
Confidence 568999999999997 6988888888888776
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.41 Score=38.08 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=30.9
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
++.+++.|| +.||+.|......+.+...+++..++.+.-+
T Consensus 27 ~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~gi 67 (220)
T d1prxa_ 27 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIAL 67 (220)
T ss_dssp TSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeecc
Confidence 457777788 6799999998999998888887555555544
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.69 E-value=0.097 Score=40.06 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=26.8
Q ss_pred cCCcEEEEEECCCCh-hHHHHHHHHHHHHhhc
Q psy160 103 ENEFVTVFFYETDHK-DSVKVLERLEKIDGET 133 (346)
Q Consensus 103 ~~~~~lv~F~~~~C~-~c~~~~~~~~~~a~~~ 133 (346)
.+++++|.|+..||+ .|....+.+.++.+.+
T Consensus 30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~ 61 (172)
T d1xzoa1 30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKL 61 (172)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEEEecccccccccccchhhhhhhhhh
Confidence 468899999999997 6998899998888777
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.4 Score=38.19 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHhhccCCCcEEE
Q psy160 104 NEFVTVFFY-ETDHKDSVKVLERLEKIDGETDNMDITFV 141 (346)
Q Consensus 104 ~~~~lv~F~-~~~C~~c~~~~~~~~~~a~~~~~~~i~~~ 141 (346)
++.+++.|| +.||+.|..-+..+++....+.+.++.++
T Consensus 27 ~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~ 65 (220)
T d1prxa_ 27 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLI 65 (220)
T ss_dssp TSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred CCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceee
Confidence 355666777 67999999999999999998866554444
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=91.37 E-value=0.098 Score=39.79 Aligned_cols=38 Identities=5% Similarity=0.228 Sum_probs=28.8
Q ss_pred cceEEEEEE-cCCChhhHHHHHHHHHHHhhcCcCceEEEEE
Q psy160 209 TQYLAVYFY-KLNCNICDQILEGLEKVDDECDIYGIHMVKI 248 (346)
Q Consensus 209 ~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i 248 (346)
.+++++.|| +.||+.|....+.|++...++++ +.++-+
T Consensus 42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~--~~vi~i 80 (164)
T d1q98a_ 42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN--TIVLCI 80 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT--EEEEEE
T ss_pred CcEEEEEecCccccCcccHHHHHHHHHHHHhcc--ceEEee
Confidence 457788888 45777899888999998888874 555555
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=91.17 E-value=0.2 Score=32.58 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=34.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEE-cChhhhhhCCCccccEEE
Q psy160 213 AVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKI-QDPQLAKRYSIKTFPALV 266 (346)
Q Consensus 213 lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i-~~~~~~~~~~i~~~Pti~ 266 (346)
+..|..++|..|..+...+.+. .+..+....| .++++..+|+.+ +|.+.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~~----~~~~~~~vdI~~d~~l~~~y~~~-IPVl~ 51 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQA----RAGAFFSVFIDDDAALESAYGLR-VPVLR 51 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHHT----TCCCEEEEECTTCHHHHHHHTTT-CSEEE
T ss_pred EEEECCCCccHHHHHHHHHHhc----cCCcEEEEEccCCHHHHHHhCCe-eeEEE
Confidence 4678899999998776655432 2234555566 788999999976 89654
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.77 E-value=0.27 Score=34.45 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHHHHHhcCCcEEEEEEC-----CCChhHHHHHHHHHHHHhhccCCCcEEEEeC-C----hhhHHhhCCCCcceEEEEec
Q psy160 96 MLDKLLEENEFVTVFFYE-----TDHKDSVKVLERLEKIDGETDNMDITFVKMA-D----PRYARKWGVTKLPAVVYFRH 165 (346)
Q Consensus 96 ~~~~~~~~~~~~lv~F~~-----~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~-~----~~l~~~~~i~~~Ptl~~~~~ 165 (346)
.++.++.+++ +|.|.. |.|++|.+....|....- ....+.++ . ..+.+.-+-..+|.|++ +
T Consensus 7 ~i~~~i~~~~--VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i-----~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~ 77 (109)
T d1wika_ 7 GLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNSTGV-----EYETFDILEDEEVRQGLKTFSNWPTYPQLYV--R 77 (109)
T ss_dssp CHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHTCS-----CEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--S
T ss_pred HHHHHHhcCC--EEEEeCCCCCCCCChHHHHHHHHHHhcCC-----CceEEEecccHHHHHHHHHhcCCCCCCeEEE--C
Confidence 3556665544 455765 889999998877765332 24444554 2 33555667888998775 4
Q ss_pred CC
Q psy160 166 RF 167 (346)
Q Consensus 166 g~ 167 (346)
|+
T Consensus 78 g~ 79 (109)
T d1wika_ 78 GD 79 (109)
T ss_dssp SS
T ss_pred CE
Confidence 54
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.87 E-value=0.37 Score=36.39 Aligned_cols=31 Identities=3% Similarity=0.278 Sum_probs=22.2
Q ss_pred ccceEEEEEE-cCCChhhHHHHHHHHHHHhhc
Q psy160 208 ETQYLAVYFY-KLNCNICDQILEGLEKVDDEC 238 (346)
Q Consensus 208 ~~~~~lv~F~-~~~c~~c~~~~~~~~~la~~~ 238 (346)
..+++++.|| +.||+.|....+.+.+.....
T Consensus 42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~ 73 (166)
T d1xvqa_ 42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS 73 (166)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence 3457888888 457888988777777666553
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.36 E-value=0.16 Score=38.80 Aligned_cols=41 Identities=12% Similarity=0.343 Sum_probs=30.8
Q ss_pred ccceEEEEEEcCCCh-hhHHHHHHHHHHHhhcC--cCceEEEEE
Q psy160 208 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDECD--IYGIHMVKI 248 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~-~c~~~~~~~~~la~~~~--~~~i~~~~i 248 (346)
..++++|.|+..||+ .|....+.+.++.+.+. +.++.++.+
T Consensus 30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~i 73 (172)
T d1xzoa1 30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 73 (172)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccc
Confidence 357899999999996 69888888887777663 235666666
|
| >d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=85.79 E-value=3.3 Score=28.15 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=47.7
Q ss_pred HHHHHHhc-cceEEEEEEcCCChhhHHHHHHHHHHHhhcCcCceEEEEEcChhhhhhCCCccccEEEEEeCCeE--EEee
Q psy160 201 MLETMVEE-TQYLAVYFYKLNCNICDQILEGLEKVDDECDIYGIHMVKIQDPQLAKRYSIKTFPALVYFRNGNP--LIFE 277 (346)
Q Consensus 201 ~~~~~~~~-~~~~lv~F~~~~c~~c~~~~~~~~~la~~~~~~~i~~~~i~~~~~~~~~~i~~~Pti~~~~~g~~--~~y~ 277 (346)
++..+++. .+++-+..+...|..|..+...++++|..-. ++.+..-+ .+....|++.+.++|+. ++|.
T Consensus 9 QLk~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lSd--kI~~~~~~-------~~~~r~Ps~~i~~~g~~~gI~F~ 79 (102)
T d1hyua3 9 QLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSD--KVTFKEDN-------TLPVRKPSFLITNPGSQQGPRFA 79 (102)
T ss_dssp HHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEECT-------TSSSCSSEEEEECTTCCCSCEEE
T ss_pred HHHHHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhCC--CeEEEEcC-------CCCCCCCeEEEecCCCEeeeEEe
Confidence 34444443 4566666677788899999999999998643 56664321 12234699999888763 7788
Q ss_pred cCcc
Q psy160 278 GENK 281 (346)
Q Consensus 278 g~~~ 281 (346)
|-..
T Consensus 80 GiP~ 83 (102)
T d1hyua3 80 GSPL 83 (102)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.09 E-value=0.36 Score=36.49 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=27.5
Q ss_pred cCCcEEEEEEC-CCChhHHHHHHHHHHHHhhccCCCcEEEEeC
Q psy160 103 ENEFVTVFFYE-TDHKDSVKVLERLEKIDGETDNMDITFVKMA 144 (346)
Q Consensus 103 ~~~~~lv~F~~-~~C~~c~~~~~~~~~~a~~~~~~~i~~~~~~ 144 (346)
.++++++.||. .||+.|..-++.+.+..+.. +..+..+..|
T Consensus 42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d 83 (166)
T d1xvqa_ 42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKD 83 (166)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred CCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccc
Confidence 45678888884 47888998888887776654 2224444444
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.53 Score=34.60 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=24.6
Q ss_pred ccceEEEEEEcCCCh-hhHHHHHHHHHHHhhc
Q psy160 208 ETQYLAVYFYKLNCN-ICDQILEGLEKVDDEC 238 (346)
Q Consensus 208 ~~~~~lv~F~~~~c~-~c~~~~~~~~~la~~~ 238 (346)
..++++|.|+.+||+ .|....+.+.++.+.+
T Consensus 19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~ 50 (160)
T d1wp0a1 19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEI 50 (160)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCccccccchHHHHHHHHHh
Confidence 468999999999996 6887777777776654
|