Psyllid ID: psy16109

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSILH
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccEEEEEEccccHHHHHHcccHHHHcccEEccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHcccccccccEEEEEEEEccHHHHHHccHHHcccEEEEcccEEEHHHHHHHHHHHccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccEEcc
Coil and Loop (DISEMBL)
MTLQALRVLLkkepprnkkLLVLCTTSCREVLEDLKILSKFSAvlhvpnlstpehLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKledegcldmgtsilh
Flexible Loop (DISEMBL)
MTLQALRVllkkepprnkkllvLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYlhqhkarvfVGIRKLLGLIDMARQIEENYRVMKFLTkledegcldmgtsilh
Low Complexity Region (SEG)
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSILH
Disordered region (IsUnstruct)
*****************KKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLD*******
Disordered Region (DISOPRED)
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSIL*
Disordered Region (DISEMBL)
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSILH
Disordered Region (DISPRO)
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSIL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSILH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P46461	745	Vesicle-fusing ATPase 1 O	yes	N/A	0.937	0.162	0.601	9e-39
P54351	752	Vesicle-fusing ATPase 2 O	no	N/A	0.860	0.147	0.539	2e-29
Q94392	824	Vesicle-fusing ATPase OS=	yes	N/A	0.899	0.140	0.394	4e-16
Q5R410	744	Vesicle-fusing ATPase OS=	yes	N/A	0.837	0.145	0.427	6e-16
P46459	744	Vesicle-fusing ATPase OS=	yes	N/A	0.837	0.145	0.427	6e-16
P18708	744	Vesicle-fusing ATPase OS=	yes	N/A	0.837	0.145	0.427	6e-16
Q9QUL6	744	Vesicle-fusing ATPase OS=	yes	N/A	0.837	0.145	0.418	1e-15
P46460	744	Vesicle-fusing ATPase OS=	yes	N/A	0.829	0.143	0.422	2e-15
Q75JI3	738	Vesicle-fusing ATPase OS=	yes	N/A	0.852	0.149	0.350	2e-12
P18759	758	Vesicular-fusion protein	yes	N/A	0.790	0.134	0.362	6e-11

>sp|P46461|NSF1_DROME Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=2 SV=1

 Score =  158 bits (400), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+FSK ++Q I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct: 681 ENTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 6

>sp|P54351|NSF2_DROME Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK+PP+ +KLL+LCT+S R+VLE++++LS F++VLHV NLSTPE++L V+++SD+FS ++
Sbjct: 636 KKQPPKGRKLLILCTSSRRDVLEEMEMLSAFTSVLHVSNLSTPENVLAVLDDSDLFSPEE 695

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDM 123
           +Q I R +     R+ +GI+KLL LIDM RQ E + RV+KFL+K+E+EG L+M
Sbjct: 696 LQSIARKMAGK--RLCIGIKKLLALIDMIRQSEPHQRVIKFLSKMEEEGGLEM 746

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q94392|NSF_CAEEL Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           + +QAL VLL   PP   +L V+ T+S R  L D+ ++  F  V+ +P L+T   ++NVI
Sbjct: 698 LVIQALLVLLNAPPPAGHRLFVIATSSDRMFLRDMGLMDVFGDVIDIPKLTTAGQMMNVI 757

Query: 61  EESDVFSKKQVQEIERYLHQ-HKARVF--VGIRKLLGLIDMARQIEENYRVMKFLTKLE 116
           +ES+++S  Q+  IE+ L    +   F  VGI+ LL LI+ ARQ E +YRV   L  +E
Sbjct: 758 QESNIYSDDQLPMIEQKLASICRGEGFHGVGIKHLLELIESARQCEADYRVPTLLNMME 816

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q5R410|NSF_PONAB Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P18708|NSF_CRIGR Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 738

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q9QUL6|NSF_RAT Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  + +EG 
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALMREEGA 738

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P46460|NSF_MOUSE Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 74/109 (67%), Gaps = 2/109 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 631 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  + +EG
Sbjct: 691 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALMREEG 737

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack GRIA2 leads to influence GRIA2 membrane cycling.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q75JI3|NSF_DICDI Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 7/117 (5%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           + LQ L VL K+ PP+ +KLLV+ TTS  ++L+D+ I+  F+ VL VP++ST +    V 
Sbjct: 623 LILQTLAVLFKRTPPKGRKLLVIATTSNPDILKDMDIMDCFATVLSVPSISTAKEFQTVC 682

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLED 117
            E   F++K+  E   +         + I++++ +++MARQ E N+ +  F   LED
Sbjct: 683 FELG-FTQKEASEAASFFTSP-----ITIKQIIMIVEMARQEEGNF-IDNFKMCLED 732

Required for vesicle-mediated transport. Involved in endocytosis and endosome-endosome fusion. May be required for transport from the endoplasmic reticulum to the Golgi stack, and for the fusion of transport vesicles within the Golgi cisternae. Required for cell polarity, locomotion and chemotaxis.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P18759|SEC18_YEAST Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC18 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 60/102 (58%)

Query: 3   LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
           LQ L+V LK++PP++++LL++ TTS   VL+ + ILS F   + VPN++  + L NV+ E
Sbjct: 644 LQMLKVALKRKPPQDRRLLIMTTTSAYSVLQQMDILSCFDNEIAVPNMTNLDELNNVMIE 703

Query: 63  SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEE 104
           S+        ++   L +      VGI+K L  I+ AR  E+
Sbjct: 704 SNFLDDAGRVKVINELSRSCPNFNVGIKKTLTNIETARHDED 745

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
194895601	745	GG17764 [Drosophila erecta] gi|190649943	0.937	0.162	0.609	3e-37
17864540	745	comatose, isoform A [Drosophila melanoga	0.937	0.162	0.601	6e-37
195478210	745	GE17054 [Drosophila yakuba] gi|194187968	0.937	0.162	0.601	8e-37
194764085	745	GF21411 [Drosophila ananassae] gi|190619	0.937	0.162	0.609	2e-36
195168952	745	GL13314 [Drosophila persimilis] gi|19847	0.937	0.162	0.601	2e-36
170033748	714	vesicular-fusion protein Nsf1 [Culex qui	0.891	0.161	0.661	4e-35
195132538	745	GI21685 [Drosophila mojavensis] gi|19390	0.860	0.148	0.601	4e-34
357619681	746	N-ethylmaleimide sensitive fusion protei	0.891	0.154	0.564	2e-33
157120766	748	vesicular-fusion protein nsf [Aedes aegy	0.891	0.153	0.618	2e-33
34867976	749	N-ethylmaleimide-sensitive factor [Aedes	0.891	0.153	0.618	2e-33

>gi|194895601|ref|XP_001978294.1| GG17764 [Drosophila erecta] gi|190649943|gb|EDV47221.1| GG17764 [Drosophila erecta]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS PEH+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSQPEHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+FSK ++Q I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct: 681 EHTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17864540|ref|NP_524877.1| comatose, isoform A [Drosophila melanogaster] gi|442616191|ref|NP_001259506.1| comatose, isoform B [Drosophila melanogaster] gi|1171772|sp|P46461.1|NSF1_DROME RecName: Full=Vesicle-fusing ATPase 1; AltName: Full=N-ethylmaleimide-sensitive fusion protein 1; Short=NEM-sensitive fusion protein 1; AltName: Full=Protein comatose; AltName: Full=Vesicular-fusion protein NSF1; AltName: Full=dNsf-1; Short=NSF-1 gi|507752|gb|AAA83413.1| N-ethylmaleimide-sensitive fusion protein [Drosophila melanogaster] gi|22832175|gb|AAF48244.2| comatose, isoform A [Drosophila melanogaster] gi|33636559|gb|AAQ23577.1| RE33604p [Drosophila melanogaster] gi|440216725|gb|AGB95348.1| comatose, isoform B [Drosophila melanogaster]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+FSK ++Q I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct: 681 ENTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478210|ref|XP_002100444.1| GE17054 [Drosophila yakuba] gi|194187968|gb|EDX01552.1| GE17054 [Drosophila yakuba]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSQPDHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+FSK ++Q I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct: 681 EHTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764085|ref|XP_001964162.1| GF21411 [Drosophila ananassae] gi|190619087|gb|EDV34611.1| GF21411 [Drosophila ananassae]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 102/123 (82%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct: 621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSHPDHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+FSK +VQ I + +     RVF+GI+KLLGLIDMARQ E + R +KFL+K+E+EG 
Sbjct: 681 EHTDIFSKGEVQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEPSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168952|ref|XP_002025294.1| GL13314 [Drosophila persimilis] gi|198470247|ref|XP_002133409.1| GA22832 [Drosophila pseudoobscura pseudoobscura] gi|194108750|gb|EDW30793.1| GL13314 [Drosophila persimilis] gi|198145361|gb|EDY72037.1| GA22832 [Drosophila pseudoobscura pseudoobscura]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 103/123 (83%), Gaps = 2/123 (1%)

Query: 1   MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
           MTLQAL VLL K+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS+PEH+L V+
Sbjct: 621 MTLQALLVLLNKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSSPEHVLAVL 680

Query: 61  EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
           E +D+F+K +VQ I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct: 681 EHTDLFNKGEVQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query: 121 LDM 123
           LDM
Sbjct: 739 LDM 741

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033748|ref|XP_001844738.1| vesicular-fusion protein Nsf1 [Culex quinquefasciatus] gi|167874815|gb|EDS38198.1| vesicular-fusion protein Nsf1 [Culex quinquefasciatus]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 3/118 (2%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIE-ESDVFSKK 69
           KK+PPR KKLL+LCTTS R+VLED+++LS F+AVLHVPNLS PEH+L+V+E ESDVFSK 
Sbjct: 598 KKQPPRGKKLLILCTTSRRQVLEDMEMLSAFTAVLHVPNLSQPEHILSVLEQESDVFSKS 657

Query: 70  QVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSI 127
            +  I + +  HK  VFVGI+KLL LID++RQ E   RV KFLTKLE+EG LD GTSI
Sbjct: 658 DLSTIYKRMKGHK--VFVGIKKLLDLIDLSRQTEPQQRVNKFLTKLEEEGALDAGTSI 713

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132538|ref|XP_002010700.1| GI21685 [Drosophila mojavensis] gi|193907488|gb|EDW06355.1| GI21685 [Drosophila mojavensis]

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 96/113 (84%), Gaps = 2/113 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK+PP+ +KLL+LCT+S REVLE++++LS F+AVLHVPNLS+PEH+++V+E++D+FSK +
Sbjct: 631 KKQPPKGRKLLILCTSSRREVLEEMEMLSAFTAVLHVPNLSSPEHVISVLEDTDIFSKGE 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDM 123
           +Q I + +     RVF+GI+KLLGLIDMARQ E + R +KFLTK+E+EG LDM
Sbjct: 691 LQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEPSQRAIKFLTKMEEEGGLDM 741

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619681|gb|EHJ72156.1| N-ethylmaleimide sensitive fusion protein [Danaus plexippus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 95/117 (81%), Gaps = 2/117 (1%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK+PP+ +KLL+LCT+S R+VLED+++LS F+ VLHVPNLS PEH++ V+EESD F+K+ 
Sbjct: 631 KKQPPKGRKLLILCTSSRRQVLEDMEVLSAFTGVLHVPNLSQPEHVMTVLEESDAFTKRD 690

Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSI 127
           + +I+  L    A++F+GI+KLL LIDM +Q +E  RV KFLTK+++EG LD+GT+I
Sbjct: 691 LAKIQHDL--RGAKIFIGIKKLLALIDMVKQTDEESRVFKFLTKMQEEGSLDLGTTI 745

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120766|ref|XP_001659762.1| vesicular-fusion protein nsf [Aedes aegypti] gi|108883051|gb|EAT47276.1| AAEL001616-PA [Aedes aegypti]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 94/118 (79%), Gaps = 3/118 (2%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIE-ESDVFSKK 69
           KK+PPR KKLL+LCTTS R+VLED+++LS F+AVLHVPNLS PEH+L+V+E E DVFSK+
Sbjct: 632 KKQPPRGKKLLILCTTSRRQVLEDMEMLSAFTAVLHVPNLSQPEHILSVLEQEQDVFSKQ 691

Query: 70  QVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSI 127
            +  I + +  HK  +FVGI+KLL L+D+ RQ +   RV KFL+KLE+EG LD GTSI
Sbjct: 692 DLSTIYKRMKGHK--IFVGIKKLLDLVDLTRQTDPTQRVNKFLSKLEEEGALDAGTSI 747

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|34867976|gb|AAQ83118.1| N-ethylmaleimide-sensitive factor [Aedes aegypti]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 94/118 (79%), Gaps = 3/118 (2%)

Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIE-ESDVFSKK 69
           KK+PPR KKLL+LCTTS R+VLED+++LS F+AVLHVPNLS PEH+L+V+E E DVFSK+
Sbjct: 633 KKQPPRGKKLLILCTTSRRQVLEDMEMLSAFTAVLHVPNLSQPEHILSVLEQEQDVFSKQ 692

Query: 70  QVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLDMGTSI 127
            +  I + +  HK  +FVGI+KLL L+D+ RQ +   RV KFL+KLE+EG LD GTSI
Sbjct: 693 DLSTIYKRMKGHK--IFVGIKKLLDLVDLTRQTDPTQRVNKFLSKLEEEGALDAGTSI 748

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
FB|FBgn0000346	745	comt "comatose" [Drosophila me	0.937	0.162	0.601	1.7e-34
FB|FBgn0013998	752	Nsf2 "NEM-sensitive fusion pro	0.937	0.160	0.560	1.1e-30
ZFIN|ZDB-GENE-030616-37	744	nsfa "N-ethylmaleimide-sensiti	0.937	0.162	0.443	2.4e-21
UNIPROTKB|E1C649	747	NSF "Uncharacterized protein"	0.930	0.160	0.450	2.4e-21
UNIPROTKB|B4DFA2	644	NSF "cDNA FLJ59316, highly sim	0.906	0.181	0.453	4.9e-21
UNIPROTKB|E1BQU4	745	NSF "Uncharacterized protein"	0.945	0.163	0.443	5.1e-21
UNIPROTKB|F1P6Z3	745	NSF "Uncharacterized protein"	0.906	0.157	0.453	5.1e-21
UNIPROTKB|E2RFV4	811	NSF "Uncharacterized protein"	0.906	0.144	0.453	6e-21
UNIPROTKB|I3L0N3	739	NSF "Vesicle-fusing ATPase" [H	0.906	0.158	0.453	6.4e-21
UNIPROTKB|P46459	744	NSF "Vesicle-fusing ATPase" [H	0.906	0.157	0.453	6.5e-21

FB|FBgn0000346 comt "comatose" [Drosophila melanogaster (taxid:7227)]

 Score = 382 (139.5 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/123 (60%), Positives = 103/123 (83%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             MTLQAL VLLKK+PP+ +KLL+LCT+S REVLE++++L+ F++VLHVPNLS P+H+L V+
Sbjct:   621 MTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVL 680

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
             E +D+FSK ++Q I + +     RVF+GI+KLLGLIDMARQ E++ R +KFL+K+E+EG 
Sbjct:   681 ENTDIFSKGEIQAIGKKMAGK--RVFIGIKKLLGLIDMARQTEQSQRAIKFLSKMEEEGG 738

Query:   121 LDM 123
             LDM
Sbjct:   739 LDM 741

GO:0005737 "cytoplasm" evidence=ISS;NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0016887 "ATPase activity" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

FB|FBgn0013998 Nsf2 "NEM-sensitive fusion protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 347 (127.2 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 69/123 (56%), Positives = 101/123 (82%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             +TLQAL VLLKK+PP+ +KLL+LCT+S R+VLE++++LS F++VLHV NLSTPE++L V+
Sbjct:   626 LTLQALLVLLKKQPPKGRKLLILCTSSRRDVLEEMEMLSAFTSVLHVSNLSTPENVLAVL 685

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
             ++SD+FS +++Q I R +     R+ +GI+KLL LIDM RQ E + RV+KFL+K+E+EG 
Sbjct:   686 DDSDLFSPEELQSIARKMAGK--RLCIGIKKLLALIDMIRQSEPHQRVIKFLSKMEEEGG 743

Query:   121 LDM 123
             L+M
Sbjct:   744 LEM 746

GO:0005737 "cytoplasm" evidence=ISS;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=NAS

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

ZFIN|ZDB-GENE-030616-37 nsfa "N-ethylmaleimide-sensitive factor a" [Danio rerio (taxid:7955)]

 Score = 260 (96.6 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 55/124 (44%), Positives = 85/124 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP  +KLL++ TTS ++VL+++++L  FS  +HV N+S+ +HL+  +
Sbjct:   621 LVLQALLVLLKKTPPHGRKLLIIGTTSRKDVLQEMEMLDAFSTTIHVQNISSGDHLVEAL 680

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
             E    F+  +   I +  H    RV++GI+KLL LI+M+ Q+++ YRV KFL+ L+DEG 
Sbjct:   681 ELLGSFTDAERTTIAQ--HVKGKRVWIGIKKLLMLIEMSLQMDQEYRVSKFLSLLKDEGA 738

Query:   121 LDMG 124
              D G
Sbjct:   739 -DRG 741

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0014037 "Schwann cell differentiation" evidence=IMP

GO:0048932 "myelination of posterior lateral line nerve axons" evidence=IMP

GO:0048929 "efferent axon development in posterior lateral line nerve" evidence=IMP

GO:0048933 "afferent axon development in posterior lateral line nerve" evidence=IMP

GO:0014044 "Schwann cell development" evidence=IMP

GO:0048914 "myelination of anterior lateral line nerve axons" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0048794 "swim bladder development" evidence=IMP

GO:0051875 "pigment granule localization" evidence=IMP

GO:0045162 "clustering of voltage-gated sodium channels" evidence=IMP

GO:0021854 "hypothalamus development" evidence=IMP

UNIPROTKB|E1C649 NSF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 260 (96.6 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 55/122 (45%), Positives = 86/122 (70%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E L+  +
Sbjct:   621 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLMEAL 680

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
             E    F  K+   I + + + K+ V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct:   681 ELLGNFKDKERSTIAQNV-KGKS-VWIGIKKLLMLIEMSLQMDPEYRVKKFLALLREEGT 738

Query:   121 LD 122
             LD
Sbjct:   739 LD 740

GO:0005524 "ATP binding" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

UNIPROTKB|B4DFA2 NSF "cDNA FLJ59316, highly similar to Vesicle-fusing ATPase (EC 3.6.4.6)" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 54/119 (45%), Positives = 82/119 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +
Sbjct:   527 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 586

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
             E    F  K+   I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct:   587 ELLGNFKDKERTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 643

GO:0005524 "ATP binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BQU4 NSF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 5.1e-21, P = 5.1e-21
 Identities = 55/124 (44%), Positives = 86/124 (69%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E L+  +
Sbjct:   621 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLMEAL 680

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
             E    F  K+   I + + + K+ V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct:   681 ELLGNFKDKERSTIAQNV-KGKS-VWIGIKKLLMLIEMSLQMDPEYRVKKFLALLREEGT 738

Query:   121 LDMG 124
             L  G
Sbjct:   739 LHEG 742

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P6Z3 NSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 5.1e-21, P = 5.1e-21
 Identities = 54/119 (45%), Positives = 82/119 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +
Sbjct:   622 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 681

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
             E    F  K+   I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct:   682 ELLGNFKDKERTTISQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 738

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RFV4 NSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 6.0e-21, P = 6.0e-21
 Identities = 54/119 (45%), Positives = 82/119 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +
Sbjct:   680 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 739

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
             E    F  K+   I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct:   740 ELLGNFKDKERTTISQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 796

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|I3L0N3 NSF "Vesicle-fusing ATPase" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 6.4e-21, P = 6.4e-21
 Identities = 54/119 (45%), Positives = 82/119 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +
Sbjct:   616 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 675

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
             E    F  K+   I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct:   676 ELLGNFKDKERTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 732

GO:0005524 "ATP binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

UNIPROTKB|P46459 NSF "Vesicle-fusing ATPase" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 6.5e-21, P = 6.5e-21
 Identities = 54/119 (45%), Positives = 82/119 (68%)

Query:     1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVI 60
             + LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +
Sbjct:   621 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 680

Query:    61 EESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
             E    F  K+   I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct:   681 ELLGNFKDKERTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 737

GO:0005524 "ATP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0006887 "exocytosis" evidence=TAS

GO:0045026 "plasma membrane fusion" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0001921 "positive regulation of receptor recycling" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46461	NSF1_DROME	3, ., 6, ., 4, ., 6	0.6016	0.9379	0.1624	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG0741|consensus	744		100.0
PF00004	132	AAA: ATPase family associated with various cellula	95.01
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	88.8
PRK00411	394	cdc6 cell division control protein 6; Reviewed	87.76
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	87.37
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	87.05
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	85.24
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	82.62
CHL00195	489	ycf46 Ycf46; Provisional	82.18
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	81.5
KOG0740|consensus	428		80.52

>KOG0741|consensus

Probab=100.00  E-value=1.2e-34  Score=253.94  Aligned_cols=120  Identities=54%  Similarity=0.807  Sum_probs=114.8

Q ss_pred             ChHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q psy16109          1 MTLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQ   80 (129)
Q Consensus         1 ~ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l~~   80 (129)
                      .|||||+|||||+|||||||||+||||.++||++|||++||+++++||++++.+++.+||++.+.|++.+.+.+.+.+  
T Consensus       623 ~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~--  700 (744)
T KOG0741|consen  623 LVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQL--  700 (744)
T ss_pred             HHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcchhHHHHHHH--
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999998888  


Q ss_pred             CCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCccc
Q psy16109         81 HKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCLD  122 (129)
Q Consensus        81 ~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~~~  122 (129)
                      -+..++|||||+|++||||+|++..+|+.+|++.|+++|...
T Consensus       701 ~~~~~~vgIKklL~lie~a~q~e~~~rv~~~~~~m~~~~~~~  742 (744)
T KOG0741|consen  701 LSKKVNVGIKKLLMLIEMARQDEQEYRVRKFLALMEEEGANP  742 (744)
T ss_pred             hccccchhHHHHHHHHHHHhccCccchHHHHHHHHHhhcccc
Confidence            677799999999999999999998999999999999998754

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.01  E-value=0.01  Score=40.72  Aligned_cols=46  Identities=26%  Similarity=0.474  Sum_probs=36.8

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHh-CCCchhcccceecC
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLED-LKILSKFSAVLHVP   48 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~-lgl~~~F~~~i~VP   48 (129)
                      ++++|+.++.+...+++++.||+||+..+-+.. +-- ++|+..+++|
T Consensus        85 ~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~  131 (132)
T PF00004_consen   85 LLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP  131 (132)
T ss_dssp             HHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred             ccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence            578999999999999999999999997544433 334 8999999987

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=88.80  E-value=1.1  Score=40.88  Aligned_cols=44  Identities=16%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             CCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109         17 NKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE   61 (129)
Q Consensus        17 GrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~   61 (129)
                      +++++|||||+.++.++.--+- ..|+..++||... .++-..+++
T Consensus       588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd-~~~R~~i~~  632 (733)
T TIGR01243       588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPD-EEARKEIFK  632 (733)
T ss_pred             CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcC-HHHHHHHHH
Confidence            4679999999999998887775 6899999999886 456666653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=87.76  E-value=9.8  Score=31.42  Aligned_cols=73  Identities=16%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCC--Cchhcc-cceecCCCCCHHHHHHHHHhc-------CCCCHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLK--ILSKFS-AVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQ   72 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lg--l~~~F~-~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~   72 (129)
                      |.+|+-+....+  +.++.||++++..++++.++  +...|. ..++.|+.+ .+++..+++..       +.|+++.++
T Consensus       159 l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~-~~e~~~il~~r~~~~~~~~~~~~~~l~  235 (394)
T PRK00411        159 LYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYT-ADEIFDILKDRVEEGFYPGVVDDEVLD  235 (394)
T ss_pred             HHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCC-HHHHHHHHHHHHHhhcccCCCCHhHHH
Confidence            445544444432  45899999999888877654  233453 568999997 48999988742       246666665


Q ss_pred             HHHHHH
Q psy16109         73 EIERYL   78 (129)
Q Consensus        73 ~i~~~l   78 (129)
                      .+.+..
T Consensus       236 ~i~~~~  241 (394)
T PRK00411        236 LIADLT  241 (394)
T ss_pred             HHHHHH
Confidence            555544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=87.37  E-value=7.9  Score=33.75  Aligned_cols=57  Identities=18%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE   61 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~   61 (129)
                      +..|+..+..-.. ..+++|||||+.++.++.-=+- ..|+..++||... .++-..+++
T Consensus       178 ~~~lL~~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd-~~~R~~il~  235 (495)
T TIGR01241       178 LNQLLVEMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD-IKGREEILK  235 (495)
T ss_pred             HHHHHhhhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC-HHHHHHHHH
Confidence            3445555543322 3458999999988776654332 3699999998775 345555444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=87.05  E-value=3.1  Score=29.18  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCc
Q psy16109         54 EHLLNVIEESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC  120 (129)
Q Consensus        54 ~el~~Vl~~~~~F~~~e~~~i~~~l~~~~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~  120 (129)
                      +++..-|-+.++|++++++.|..+-  +++...=+..+||.-++  |.   ..-+..|+++|++.|-
T Consensus        22 ~~v~d~ll~~~ilT~~d~e~I~aa~--~~~g~~~~ar~LL~~L~--rg---~~aF~~Fl~aLreT~~   81 (88)
T cd08819          22 RDVCDKCLEQGLLTEEDRNRIEAAT--ENHGNESGARELLKRIV--QK---EGWFSKFLQALRETEH   81 (88)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhc--cccCcHHHHHHHHHHhc--cC---CcHHHHHHHHHHHcCc
Confidence            4555556677899999998888765  33333455667777776  32   2459999999999885

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=85.24  E-value=13  Score=30.24  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             CCeEEEEecCCcHHHHHhCC--Cchhcc-cceecCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHH
Q psy16109         17 NKKLLVLCTTSCREVLEDLK--ILSKFS-AVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQEIER   76 (129)
Q Consensus        17 GrrLLViaTTS~~~vL~~lg--l~~~F~-~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~~i~~   76 (129)
                      +.++.+|++++.+++++.+.  +.+.|. ..++.|+.+ .+|+..+++..       +.|+++.++.+..
T Consensus       163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~-~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~  231 (365)
T TIGR02928       163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYD-AEELRDILENRAEKAFYDGVLDDGVIPLCAA  231 (365)
T ss_pred             CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCC-HHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence            56889999998888877664  345564 568999997 58999999742       2366654444433

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=82.62  E-value=9.2  Score=28.43  Aligned_cols=69  Identities=30%  Similarity=0.388  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYL   78 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l   78 (129)
                      ..+|+-++..+|+  +-.+|+.|+....+++.  +.+.+ ..++++.++ .+++...+++.| ++++....+.+..
T Consensus       113 ~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~--i~sr~-~~~~~~~~~-~~~~~~~l~~~g-i~~~~~~~i~~~~  181 (188)
T TIGR00678       113 ANALLKTLEEPPP--NTLFILITPSPEKLLPT--IRSRC-QVLPFPPLS-EEALLQWLIRQG-ISEEAAELLLALA  181 (188)
T ss_pred             HHHHHHHhcCCCC--CeEEEEEECChHhChHH--HHhhc-EEeeCCCCC-HHHHHHHHHHcC-CCHHHHHHHHHHc
Confidence            3568888877555  45567766654333333  22222 478898997 589999999886 6766666665543

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>CHL00195 ycf46 Ycf46; Provisional

Probab=82.18  E-value=3.9  Score=36.29  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=35.8

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhC-CCchhcccceecCCCCCHHHHHHHHH
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDL-KILSKFSAVLHVPNLSTPEHLLNVIE   61 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~l-gl~~~F~~~i~VP~l~~~~el~~Vl~   61 (129)
                      ++.+++..+..   +...++|||||+.++-|..- ---..|+..++||.-+ .++-..+++
T Consensus       346 vl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~-~~eR~~Il~  402 (489)
T CHL00195        346 VLATFITWLSE---KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPS-LEEREKIFK  402 (489)
T ss_pred             HHHHHHHHHhc---CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcC-HHHHHHHHH
Confidence            45666666654   24579999999988755531 1124788888888664 345455544

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=81.50  E-value=7.1  Score=28.80  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHh-----CCCchhcccceecCCCCCHHHHHHHHHh-----cCC-CCHHH
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLED-----LKILSKFSAVLHVPNLSTPEHLLNVIEE-----SDV-FSKKQ   70 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~-----lgl~~~F~~~i~VP~l~~~~el~~Vl~~-----~~~-F~~~e   70 (129)
                      +++.|.-++...+-..+..+| .+.|..+++.+     -.+.+.+.. +.++.++ .++....+.+     .+. +++.+
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~-~~e~~~~~~~~~~~~~~~~~~~~~  216 (234)
T PF01637_consen  140 FLKSLRSLLDSLLSQQNVSIV-ITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLS-KEEAREFLKELFKELIKLPFSDED  216 (234)
T ss_dssp             HHHHHHHHHHH----TTEEEE-EEESSHHHHHHTT-TTSTTTT---E-EEE-----HHHHHHHHHHHHHCC------HHH
T ss_pred             HHHHHHHHHhhccccCCceEE-EECCchHHHHHhhcccCccccccce-EEEeeCC-HHHHHHHHHHHHHHhhcccCCHHH
Confidence            356677777774433444445 45555777776     234455555 9999997 5888888887     232 58888


Q ss_pred             HHHHHHHH
Q psy16109         71 VQEIERYL   78 (129)
Q Consensus        71 ~~~i~~~l   78 (129)
                      +..+.+..
T Consensus       217 ~~~i~~~~  224 (234)
T PF01637_consen  217 IEEIYSLT  224 (234)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87777765

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG0740|consensus

Probab=80.52  E-value=7.7  Score=34.20  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCH---HHHHHHHHhc-CCCCHHHHHHHHHHH
Q psy16109          4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTP---EHLLNVIEES-DVFSKKQVQEIERYL   78 (129)
Q Consensus         4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~---~el~~Vl~~~-~~F~~~e~~~i~~~l   78 (129)
                      |.|+-.+-+.--.+-|.||||||..+..+++.=.- .|...+.||.-...   ..+...|.+. +.+++.++..+++..
T Consensus       275 efLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R-rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T  352 (428)
T KOG0740|consen  275 EFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR-RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT  352 (428)
T ss_pred             HHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH-HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            44555554433333499999999999999987666 99999999876432   2344445554 346666666665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
1d2n_A	272	D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Prot		4e-17
1nsf_A	273	D2 Hexamerization Domain Of N-Ethylmaleimide Sensit		6e-17

>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein Length = 272

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 159 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 218
Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct: 219 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 266

>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor (Nsf) Length = 273

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 11  KKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQ 70
           KK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E    F  K+
Sbjct: 158 KKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 217
Query: 71  VQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGC 120
              I + +   K  V++GI+KLL LI+M+ Q++  YRV KFL  L +EG 
Sbjct: 218 RTTIAQQVKGKK--VWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	4e-36

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score =  123 bits (311), Expect = 4e-36
 Identities = 53/122 (43%), Positives = 82/122 (67%), Gaps = 2/122 (1%)

Query: 2   TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIE 61
            LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E
Sbjct: 150 VLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE 209

Query: 62  ESDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCL 121
               F  K+   I + +     +V++GI+KLL LI+M+ Q++  YRV KFL  L +EG  
Sbjct: 210 LLGNFKDKERTTIAQQVKG--KKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS 267

Query: 122 DM 123
            +
Sbjct: 268 PL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.42
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	91.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	87.87
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	87.67
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	87.3
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	86.74
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	86.53
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	86.52
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	82.76
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	80.52

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.42  E-value=3.2e-12  Score=98.97  Aligned_cols=118  Identities=45%  Similarity=0.740  Sum_probs=107.1

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQH   81 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l~~~   81 (129)
                      ++++|..++...+|.+++++||+||+.++.|+.+.+.+.|...+++|+++..+++..++...+.|+++++..+.+..  .
T Consensus       150 ~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~--~  227 (272)
T 1d2n_A          150 VLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV--K  227 (272)
T ss_dssp             HHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH--T
T ss_pred             HHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh--c
Confidence            57889999999888889999999999999999999999999999999999888999999988889999999888877  6


Q ss_pred             CCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCcc
Q psy16109         82 KARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCL  121 (129)
Q Consensus        82 ~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~~  121 (129)
                      +..++.++++++.++++|++..+..++..|+.++.+.+.-
T Consensus       228 g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~~~  267 (272)
T 1d2n_A          228 GKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS  267 (272)
T ss_dssp             TSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSCC
T ss_pred             CCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcCCc
Confidence            6677889999999999999877778899999999999863

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=91.40  E-value=0.25  Score=38.87  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             HHHHHhcCCCCCC--CeEEEEecCCcHHHHHhCC-----CchhcccceecCCCCCHHHHHHHHHhc-------CCCCHHH
Q psy16109          5 ALRVLLKKEPPRN--KKLLVLCTTSCREVLEDLK-----ILSKFSAVLHVPNLSTPEHLLNVIEES-------DVFSKKQ   70 (129)
Q Consensus         5 aLlVLlkk~PPkG--rrLLViaTTS~~~vL~~lg-----l~~~F~~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e   70 (129)
                      .|+-++...|..|  .++.||+||+.+++++.+.     +.+.|...+++|.++ .+++..+++..       +.++++.
T Consensus       163 ~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~-~~e~~~ll~~~~~~~~~~~~~~~~~  241 (412)
T 1w5s_A          163 TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK-SRELYTILEQRAELGLRDTVWEPRH  241 (412)
T ss_dssp             HHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC-HHHHHHHHHHHHHHHBCTTSCCHHH
T ss_pred             HHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC-HHHHHHHHHHHHHhcCCCCCCChHH
Confidence            3444444444335  7899999998788776554     445566669999996 57899888532       2477776


Q ss_pred             HHHHHHHH
Q psy16109         71 VQEIERYL   78 (129)
Q Consensus        71 ~~~i~~~l   78 (129)
                      +..+.+..
T Consensus       242 ~~~i~~~~  249 (412)
T 1w5s_A          242 LELISDVY  249 (412)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=87.87  E-value=0.95  Score=35.67  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIER   76 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~   76 (129)
                      +..|+..+........+.+|||||+.++.+.. .+...|+..+.+|..+ .++...+++.    .+ .+++.++..+.+
T Consensus       133 ~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~l~~~~l~~la~  209 (322)
T 1xwi_A          133 KTEFLVQMQGVGVDNDGILVLGATNIPWVLDS-AIRRRFEKRIYIPLPE-PHARAAMFKLHLGTTQNSLTEADFRELGR  209 (322)
T ss_dssp             HHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH-HHHHTCCEEEECCCCC-HHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccCCCEEEEEecCCcccCCH-HHHhhcCeEEEeCCcC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            34455555543222357899999987654432 3445788888998775 5676666654    11 135555554443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=87.67  E-value=0.86  Score=37.66  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc----C-CCCHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES----D-VFSKKQVQEIER   76 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~----~-~F~~~e~~~i~~   76 (129)
                      +..|+..+........+.+|||||+.++.+.. .+...|+..+.+|... .++...+++..    + .+++.++..+.+
T Consensus       255 ~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~l~~~~l~~la~  331 (444)
T 2zan_A          255 KTEFLVQMQGVGVDNDGILVLGATNIPWVLDS-AIRRRFEKRIYIPLPE-AHARAAMFRLHLGSTQNSLTEADFQELGR  331 (444)
T ss_dssp             HHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH-HHHTTCCEEEECCCCC-HHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred             HHHHHHHHhCcccCCCCEEEEecCCCccccCH-HHHhhcceEEEeCCcC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            34455555443333457899999987755443 3556888888887764 46666665531    1 135555554444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=87.30  E-value=3.1  Score=32.19  Aligned_cols=60  Identities=12%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             CeEEEEecCCcHHHHHhCC--CchhcccceecCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy16109         18 KKLLVLCTTSCREVLEDLK--ILSKFSAVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQEIERYL   78 (129)
Q Consensus        18 rrLLViaTTS~~~vL~~lg--l~~~F~~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~~i~~~l   78 (129)
                      .++.||+||+....++.+.  +.+.|...+++|.++ .+++..+++..       ..++++.++.+.+..
T Consensus       163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~-~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~  231 (384)
T 2qby_B          163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYD-AEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS  231 (384)
T ss_dssp             SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCC-HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred             cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCC-HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence            5778888888765444332  335677799999995 68999998853       246676666666544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=86.74  E-value=2.2  Score=32.29  Aligned_cols=95  Identities=14%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHH--HHH--hCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCRE--VLE--DLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQE   73 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~--vL~--~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~   73 (129)
                      +.+|+-++...+   .++.||+||....  .+.  +=.+.+.|+..+++|..+ .+++..+++.    .+ .|+++.++.
T Consensus       156 ~~~Ll~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~  231 (309)
T 3syl_A          156 IEILLQVMENNR---DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYS-DEELFEIAGHMLDDQNYQMTPEAETA  231 (309)
T ss_dssp             HHHHHHHHHHCT---TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCC-HHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred             HHHHHHHHhcCC---CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcC-HHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            456666666543   2456666665432  121  246778899999999997 5899888853    23 367777777


Q ss_pred             HHHHHhhCCCccccc-HHHHHHHHHHHhc
Q psy16109         74 IERYLHQHKARVFVG-IRKLLGLIDMARQ  101 (129)
Q Consensus        74 i~~~l~~~~~~~~Ig-IKkLL~~ie~A~~  101 (129)
                      +.+.+......-+-| +..+..+++.|..
T Consensus       232 l~~~~~~~~~~~~~gn~r~l~~~l~~a~~  260 (309)
T 3syl_A          232 LRAYIGLRRNQPHFANARSIRNALDRARL  260 (309)
T ss_dssp             HHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence            766553111122444 7888888887653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=86.53  E-value=1.3  Score=34.50  Aligned_cols=58  Identities=19%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE   62 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~   62 (129)
                      ...|+..+........+.+|||||..++.|+. .+.+.|+..+.+|..+ .++...+++.
T Consensus       138 ~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~-al~~Rf~~~i~~~~p~-~~~r~~il~~  195 (322)
T 3eie_A          138 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDS-AIRRRFERRIYIPLPD-LAARTTMFEI  195 (322)
T ss_dssp             HHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH-HHHHHCCEEEECCCCC-HHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCceEEEEecCChhhCCH-HHHcccCeEEEeCCCC-HHHHHHHHHH
Confidence            45566666654334457899999987655432 2345788888888764 5666666653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=86.52  E-value=1.2  Score=35.56  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERY   77 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~   77 (129)
                      ...|+..+........+.+|||||..++.+.. .+...|+..+.+|..+ .++...+++.    .+ .+++.++..+.+.
T Consensus       171 ~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~-al~rRf~~~i~i~~P~-~~~r~~il~~~l~~~~~~~~~~~l~~la~~  248 (355)
T 2qp9_X          171 KTELLVQMNGVGNDSQGVLVLGATNIPWQLDS-AIRRRFERRIYIPLPD-LAARTTMFEINVGDTPSVLTKEDYRTLGAM  248 (355)
T ss_dssp             HHHHHHHHHHCC---CCEEEEEEESCGGGSCH-HHHHTCCEEEECCCCC-HHHHHHHHHHHHTTSCBCCCHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccCCCeEEEeecCCcccCCH-HHHcccCEEEEeCCcC-HHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence            45566666654333457899999987653321 2445788888888764 5677776653    22 2566666655543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=82.76  E-value=7.5  Score=29.63  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCC--Cchhcc-cceecCCCCCHHHHHHHHHhc-------CCCCHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLK--ILSKFS-AVLHVPNLSTPEHLLNVIEES-------DVFSKKQVQ   72 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lg--l~~~F~-~~i~VP~l~~~~el~~Vl~~~-------~~F~~~e~~   72 (129)
                      +..|+-.+...  ++.++.+|+||+..+.++.+.  +.+.|. ..+++|.++ .+++..+++..       ..++++.++
T Consensus       149 l~~l~~~~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~-~~~~~~il~~~~~~~~~~~~~~~~~~~  225 (386)
T 2qby_A          149 LYKLSRINSEV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYN-AEELEDILTKRAQMAFKPGVLPDNVIK  225 (386)
T ss_dssp             HHHHHHHHHSC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCC-HHHHHHHHHHHHHHHBCSSCSCHHHHH
T ss_pred             HHHHhhchhhc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCC-HHHHHHHHHHHHHhhccCCCCCHHHHH
Confidence            33444444333  235677778887777666554  335565 489999996 58899888741       356776666


Q ss_pred             HHHHHH
Q psy16109         73 EIERYL   78 (129)
Q Consensus        73 ~i~~~l   78 (129)
                      .+.+..
T Consensus       226 ~l~~~~  231 (386)
T 2qby_A          226 LCAALA  231 (386)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=80.52  E-value=7.5  Score=29.90  Aligned_cols=76  Identities=12%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             hHHHHHHHhcCCCCCC-CeEEEEecCCcHHHHHhCC--Cchhccc-ceecCCCCCHHHHHHHHHhc-------CCCCHHH
Q psy16109          2 TLQALRVLLKKEPPRN-KKLLVLCTTSCREVLEDLK--ILSKFSA-VLHVPNLSTPEHLLNVIEES-------DVFSKKQ   70 (129)
Q Consensus         2 ILQaLlVLlkk~PPkG-rrLLViaTTS~~~vL~~lg--l~~~F~~-~i~VP~l~~~~el~~Vl~~~-------~~F~~~e   70 (129)
                      ++++|+-++...+..+ .++.||++|+..++.+.+.  +.+.|.. .+++|.++ .+++..+++..       +.|+++.
T Consensus       141 ~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~-~~~~~~~l~~~~~~~~~~~~~~~~~  219 (389)
T 1fnn_A          141 ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT-KDQIFDILLDRAKAGLAEGSYSEDI  219 (389)
T ss_dssp             HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB-HHHHHHHHHHHHHHHBCTTSSCHHH
T ss_pred             HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC-HHHHHHHHHHHHHhhcCCCCCCHHH
Confidence            3566666665543312 4677778777777666543  2344654 79999996 47888887642       3578877


Q ss_pred             HHHHHHHH
Q psy16109         71 VQEIERYL   78 (129)
Q Consensus        71 ~~~i~~~l   78 (129)
                      ++.+.+..
T Consensus       220 ~~~l~~~~  227 (389)
T 1fnn_A          220 LQMIADIT  227 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	7e-22

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 85.0 bits (209), Expect = 7e-22
 Identities = 53/117 (45%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 3   LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE 62
           LQAL VLLKK PP+ +KLL++ TTS ++VL+++++L+ FS  +HVPN++T E LL  +E 
Sbjct: 127 LQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 186

Query: 63  SDVFSKKQVQEIERYLHQHKARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEG 119
              F  K+   I + +     +V++GI+KLL LI+M+ Q++  YRV KFL  L +EG
Sbjct: 187 LGNFKDKERTTIAQQV--KGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.74
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.28
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.25
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.82
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	84.05
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	82.64
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	81.35

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=1.1e-17  Score=129.52  Aligned_cols=118  Identities=45%  Similarity=0.740  Sum_probs=111.0

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIERYLHQH   81 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~~l~~~   81 (129)
                      ++++|+.+++..++.|++++|||||+.++.|++..+.+.|+..|+||++.+.+++.++++..+.|++.+...+.+..  .
T Consensus       126 ~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~~~~~~~~~~~~i~~~~--~  203 (246)
T d1d2na_         126 VLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV--K  203 (246)
T ss_dssp             HHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH--T
T ss_pred             HHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHHhccCCChHHHHHHHHHc--C
Confidence            68999999999999999999999999999999999999999999999999999999999999999999998888877  7


Q ss_pred             CCcccccHHHHHHHHHHHhcccchhhHHHHHHHHHhcCcc
Q psy16109         82 KARVFVGIRKLLGLIDMARQIEENYRVMKFLTKLEDEGCL  121 (129)
Q Consensus        82 ~~~~~IgIKkLL~~ie~A~~~~~~~~~~~fl~~l~~~g~~  121 (129)
                      +...++|||++++++|+|++.++..++.+|+..|.++|..
T Consensus       204 g~~~~~~ik~ll~~ie~a~~~~~~~~~~~~l~~l~e~g~~  243 (246)
T d1d2na_         204 GKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS  243 (246)
T ss_dssp             TSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSCC
T ss_pred             CCccchhHHHHHHHHHHHHhcCcccHHHHHHHHHHhcCCC
Confidence            7788999999999999999988889999999999999863

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.12  Score=38.30  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCc-hhcccceecCCCCCHHHHHHHHH
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKIL-SKFSAVLHVPNLSTPEHLLNVIE   61 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~-~~F~~~i~VP~l~~~~el~~Vl~   61 (129)
                      +..++..+.... ...+++|||||+.++-++.-=+- +.|+..++||..+ .++-..+++
T Consensus       135 ~~~ll~~~d~~~-~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~-~~~R~~il~  192 (256)
T d1lv7a_         135 LNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD-VRGREQILK  192 (256)
T ss_dssp             HHHHHHHHHTCC-SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC-HHHHHHHHH
T ss_pred             HHHHHHHhhCCC-CCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcC-HHHHHHHHH
Confidence            445666665332 24579999999998887554342 4799999999996 567666665

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.28  E-value=0.08  Score=39.07  Aligned_cols=59  Identities=14%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCC-chhcccceecCCCCCHHHHHHHHHh
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKI-LSKFSAVLHVPNLSTPEHLLNVIEE   62 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl-~~~F~~~i~VP~l~~~~el~~Vl~~   62 (129)
                      ++.+|+..+..-. +..+++|||||+.++.|+.-=+ -+.|+..|+||..+ .++-..+++.
T Consensus       131 ~~~~ll~~~d~~~-~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~-~~eR~~il~~  190 (247)
T d1ixza_         131 TLNQLLVEMDGFE-KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD-VKGREQILRI  190 (247)
T ss_dssp             HHHHHHHHHHTCC-TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHhhCCC-CCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcC-HHHHHHHHHH
Confidence            3556777776532 2357999999999887765322 14799999999985 5788888874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.25  E-value=0.27  Score=35.90  Aligned_cols=58  Identities=10%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             hHHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCch--hcccceecCCCCCHHHHHHHHHh
Q psy16109          2 TLQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILS--KFSAVLHVPNLSTPEHLLNVIEE   62 (129)
Q Consensus         2 ILQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~--~F~~~i~VP~l~~~~el~~Vl~~   62 (129)
                      +++.++..+...- .+.+++|||||+.++-++.- +..  .|+..|+||..+ .++-..+++.
T Consensus       124 ~~~~~~~~~~~~~-~~~~vlvi~tTn~~~~ld~a-l~r~gRfd~~i~~~~P~-~~~R~~il~~  183 (258)
T d1e32a2         124 IVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPA-LRRFGRFDREVDIGIPD-ATGRLEILQI  183 (258)
T ss_dssp             HHHHHHHHHHTCC-CSSCEEEEEEESCGGGSCGG-GTSTTSSCEEEECCCCC-HHHHHHHHHH
T ss_pred             HHHHhcccccccc-ccCCccEEEeCCCccccchh-hhhcccccceeECCCCC-HHHHHHHhhh
Confidence            3455555555432 23469999999999888774 444  699999999996 5787888874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.82  E-value=0.25  Score=36.34  Aligned_cols=58  Identities=5%  Similarity=0.265  Sum_probs=37.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCC-chhcccceecCCCCCHHHHHHHHHh
Q psy16109          3 LQALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKI-LSKFSAVLHVPNLSTPEHLLNVIEE   62 (129)
Q Consensus         3 LQaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl-~~~F~~~i~VP~l~~~~el~~Vl~~   62 (129)
                      +..|+..+..-=++ .+++|||||+.++-|..-=+ ...|+..++||..+. ++-..+++.
T Consensus       131 ~~~ll~~l~~~~~~-~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~-~~R~~il~~  189 (265)
T d1r7ra3         131 INQILTEMDGMSTK-KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKA  189 (265)
T ss_dssp             HHHHHHTCC-------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCC-HHHHHHHHH
T ss_pred             HHHHHHHhhCcCCC-CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHH-HHHHHHHHH
Confidence            45556555432222 35899999998886654322 246999999999987 676777763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.05  E-value=0.63  Score=32.45  Aligned_cols=78  Identities=6%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             CCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHh----cC-CCCHHHHHHHHHHHhhCCCcccccH
Q psy16109         15 PRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEE----SD-VFSKKQVQEIERYLHQHKARVFVGI   89 (129)
Q Consensus        15 PkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~----~~-~F~~~e~~~i~~~l~~~~~~~~IgI   89 (129)
                      +..+.+++++|++....++.   ...+...++++..+ .+++..+++.    .+ .++++.++.+++.-  +|     -|
T Consensus       152 ~~~~~ii~i~~~~~~~~~~~---l~~~~~~i~f~~~~-~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s--~G-----Di  220 (253)
T d1sxja2         152 KTSTPLILICNERNLPKMRP---FDRVCLDIQFRRPD-ANSIKSRLMTIAIREKFKLDPNVIDRLIQTT--RG-----DI  220 (253)
T ss_dssp             HCSSCEEEEESCTTSSTTGG---GTTTSEEEECCCCC-HHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT--TT-----CH
T ss_pred             cccccccccccccccccccc---ccceeeeeeccccc-hhHHHHHHHHHHHHhCCCCCHHHHHHHHHhC--CC-----cH
Confidence            34467888888877666665   35788899999996 5788888774    23 36777777766543  22     47


Q ss_pred             HHHHHHHHHHhccc
Q psy16109         90 RKLLGLIDMARQIE  103 (129)
Q Consensus        90 KkLL~~ie~A~~~~  103 (129)
                      .+++..++++....
T Consensus       221 R~ai~~L~~~~~~~  234 (253)
T d1sxja2         221 RQVINLLSTISTTT  234 (253)
T ss_dssp             HHHHHHHTHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            88888888776543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.64  E-value=1.4  Score=30.69  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16109          4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEESDVFSKKQVQEIER   76 (129)
Q Consensus         4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~~~F~~~e~~~i~~   76 (129)
                      .+|+-.+-.+|+  +-.+|+.|++-..++..+  .+.+ ..+++|.++ .+++..+|++...++++++..+++
T Consensus       126 n~Llk~lEep~~--~~~fIl~t~~~~~ll~tI--~SRc-~~i~~~~~~-~~~~~~~L~~~~~~~~~~~~~i~~  192 (207)
T d1a5ta2         126 NALLKTLEEPPA--ETWFFLATREPERLLATL--RSRC-RLHYLAPPP-EQYAVTWLSREVTMSQDALLAALR  192 (207)
T ss_dssp             HHHHHHHTSCCT--TEEEEEEESCGGGSCHHH--HTTS-EEEECCCCC-HHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhhcc--cceeeeeecChhhhhhhh--ccee-EEEecCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence            456666666554  345666666554455542  2333 688888886 589999999877788777766665

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.35  E-value=3.9  Score=28.60  Aligned_cols=83  Identities=25%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEEecCCcHHHHHhCCCchhcccceecCCCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16109          4 QALRVLLKKEPPRNKKLLVLCTTSCREVLEDLKILSKFSAVLHVPNLSTPEHLLNVIEES-----DVFSKKQVQEIERYL   78 (129)
Q Consensus         4 QaLlVLlkk~PPkGrrLLViaTTS~~~vL~~lgl~~~F~~~i~VP~l~~~~el~~Vl~~~-----~~F~~~e~~~i~~~l   78 (129)
                      ++|+-.+..+|+  +-.+|++|++...++..  +.+-+ ..+++|.++ .+++...+...     ..++++.++.+++.-
T Consensus       133 ~~Llk~lE~~~~--~~~~il~tn~~~~i~~~--i~SRc-~~i~~~~~~-~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s  206 (239)
T d1njfa_         133 NALLKTLEEPPE--HVKFLLATTDPQKLPVT--ILSRC-LQFHLKALD-VEQIRHQLEHILNEEHIAHEPRALQLLARAA  206 (239)
T ss_dssp             HHHHHHHHSCCT--TEEEEEEESCGGGSCHH--HHTTS-EEEECCCCC-HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCC--CeEEEEEcCCccccChh--Hhhhh-cccccccCc-HHHhhhHHHHHHhhhccCCCHHHHHHHHHHc
Confidence            467777765444  45677777765555444  23333 478899986 57887766532     246777776665532


Q ss_pred             hhCCCcccccHHHHHHHHHHH
Q psy16109         79 HQHKARVFVGIRKLLGLIDMA   99 (129)
Q Consensus        79 ~~~~~~~~IgIKkLL~~ie~A   99 (129)
                        .|     -+.+++.++|.|
T Consensus       207 --~G-----d~R~ain~l~~~  220 (239)
T d1njfa_         207 --EG-----SLRDALSLTDQA  220 (239)
T ss_dssp             --TT-----CHHHHHHHHHHH
T ss_pred             --CC-----CHHHHHHHHHHH
Confidence              22     467777777765