Psyllid ID: psy16139

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNKKKKKSFDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP
cHHHHHHHHHHHHcccHHHHHHHHccccccEEEEccccccccccEEEEEEcHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccEEEEEEEcHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEEcccc
cHHHHHHHHHHHHHcccHHHHHHHcccccccEEEccccccccccEEEEEccHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHcccEEEEEEEEccccccHHHHcccccccccccHHHHHHHHHHccccHHccHHHHHHHHHccccccccccccccEEEEEcHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHccccccccccccccccHHEEEEEHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEEEccc
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMfrpqrlkgilsvpfgsvgilkpqfnknseIEIRECarnnlpdeascqNTQLIQNFVKHCTEDDVVLVLISgggsaclsspksplsleDKLKTIKLLVQSGANIKELNKVRKKLsdvkggqlaeiVYPATLVSLIISdivgdplqdiasgptvlnedlwsDARDIVIKYGLQNKVSKSVMTILshetphqdtkyFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSsdieglgddiCRGYVDLVAWIDQLRKQRTIQvgkdknniKEQDMEQNLQQVANQATIDELTKKMKvknnkkkkksfdyksphcnqFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVqsganikelnkVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATideltkkmkvknnkkkkksfdykspHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKlgldkeeldlDIAENYLVKikkmgftdENEVRRALRkaanepnhaclllvgep
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTkkmkvknnkkkkkSFDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVkklgldkeeldldIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP
***IKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACL***********KLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTI***************************************************HCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEV************HACLLL****
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETP****KYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKV*N**K****FDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEV********NEPNHACLLLVGEP
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNKKKKKSFDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP
MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNN*KKKKSFDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGE*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNKKKKKSFDYKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query466 2.2.26 [Sep-21-2011]
Q0VGK3523 Glycerate kinase OS=Rattu yes N/A 0.622 0.554 0.411 3e-57
Q8IVS8523 Glycerate kinase OS=Homo yes N/A 0.622 0.554 0.411 7e-56
Q2KJF7523 Glycerate kinase OS=Bos t yes N/A 0.622 0.554 0.411 2e-55
Q8QZY2523 Glycerate kinase OS=Mus m yes N/A 0.641 0.571 0.402 8e-55
Q08BL7502 Glycerate kinase OS=Danio yes N/A 0.645 0.599 0.391 3e-52
Q9BE01396 Glycerate kinase OS=Macac N/A N/A 0.448 0.527 0.449 3e-43
Q9VQC4487 Glycerate kinase OS=Droso yes N/A 0.577 0.552 0.359 7e-37
O58231440 Glycerate 2-kinase OS=Pyr yes N/A 0.603 0.638 0.360 2e-32
Q09235458 Uncharacterized protein C yes N/A 0.645 0.657 0.324 1e-31
Q44472438 Putative hydroxypyruvate no N/A 0.341 0.363 0.443 1e-27
>sp|Q0VGK3|GLCTK_RAT Glycerate kinase OS=Rattus norvegicus GN=Glyctk PE=2 SV=1 Back     alignment and function desciption
 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 191/309 (61%), Gaps = 19/309 (6%)

Query: 2   QEIKLIYEAAVSAVNGQNLIQANVHLEKN--KLIIRDQTVLIKNNVYLIGFGKAVLGMAV 59
           ++ + ++++AV AV    ++Q  + L+ +  +L +RD+T  ++ N+YL+GFGKAVLGMA 
Sbjct: 36  EQARQLFDSAVGAVQPGPMLQRTLSLDPSGKQLKVRDRTFQLQENLYLVGFGKAVLGMAA 95

Query: 60  EIEAMFRPQRLKGILSVPFGSVG----------ILKPQFNKNSEIEIRECARNNLPDEAS 109
             + +     ++G++SVP G             +LKP    +S I++ E A +NLPD  +
Sbjct: 96  AADELLGQHLVQGVISVPKGIRAAVELAGKQEMLLKP----HSHIQVFEGAEDNLPDRDA 151

Query: 110 CQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKE 169
            +  Q IQ   +  T DD++LVLISGGGSA L +P  P++LE+K    KLL   GA I+E
Sbjct: 152 LRAAQAIQQLAERLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTKLLAARGATIQE 211

Query: 170 LNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIV 229
           LN +RK LS +KGG LA+  YPA +VSLI+SD++GDPL+ IASGPTV +     D   I+
Sbjct: 212 LNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVIGDPLEVIASGPTVASTHSVQDCLHIL 271

Query: 230 IKYGLQNKVSKSVMTILSH--ETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQT 287
             YGL+  + +SV T+LS     PH       +V N IIG+N  AL  A+ +AE LG+  
Sbjct: 272 NHYGLRAALPRSVKTVLSRADSDPH-GPHTCGHVLNVIIGSNSLALAEAQRQAEVLGYHA 330

Query: 288 VILSSDIEG 296
           ++LS+ ++G
Sbjct: 331 MVLSTAMQG 339

Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 1
>sp|Q8IVS8|GLCTK_HUMAN Glycerate kinase OS=Homo sapiens GN=GLYCTK PE=1 SV=1 Back     alignment and function description
>sp|Q2KJF7|GLCTK_BOVIN Glycerate kinase OS=Bos taurus GN=GLYCTK PE=2 SV=1 Back     alignment and function description
>sp|Q8QZY2|GLCTK_MOUSE Glycerate kinase OS=Mus musculus GN=Glyctk PE=2 SV=1 Back     alignment and function description
>sp|Q08BL7|GLCTK_DANRE Glycerate kinase OS=Danio rerio GN=glyctk PE=2 SV=1 Back     alignment and function description
>sp|Q9BE01|GLCTK_MACFA Glycerate kinase OS=Macaca fascicularis GN=GLYCTK PE=2 SV=1 Back     alignment and function description
>sp|Q9VQC4|GLCTK_DROME Glycerate kinase OS=Drosophila melanogaster GN=Glyctk PE=2 SV=1 Back     alignment and function description
>sp|O58231|GCK_PYRHO Glycerate 2-kinase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=gck PE=1 SV=1 Back     alignment and function description
>sp|Q09235|YQ42_CAEEL Uncharacterized protein C13B9.2 OS=Caenorhabditis elegans GN=C13B9.2 PE=3 SV=3 Back     alignment and function description
>sp|Q44472|TTUD4_AGRVI Putative hydroxypyruvate reductase OS=Agrobacterium vitis GN=ttuD PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
321472083493 hypothetical protein DAPPUDRAFT_302155 [ 0.669 0.632 0.440 4e-61
395518316520 PREDICTED: glycerate kinase [Sarcophilus 0.721 0.646 0.398 1e-55
403291099367 PREDICTED: glycerate kinase [Saimiri bol 0.650 0.825 0.406 2e-55
157821525523 glycerate kinase [Rattus norvegicus] gi| 0.622 0.554 0.411 2e-55
87128440367 HBeAg binding protein 4 variant 1 [Homo 0.650 0.825 0.406 2e-55
332023307 672 Glycerate kinase [Acromyrmex echinatior] 0.665 0.461 0.410 3e-55
402859899367 PREDICTED: glycerate kinase [Papio anubi 0.639 0.811 0.406 3e-55
126336646522 PREDICTED: glycerate kinase-like [Monode 0.641 0.572 0.412 5e-55
311268984523 PREDICTED: glycerate kinase-like [Sus sc 0.622 0.554 0.414 6e-55
307170638 642 Glycerate kinase [Camponotus floridanus] 0.656 0.476 0.422 6e-55
>gi|321472083|gb|EFX83054.1| hypothetical protein DAPPUDRAFT_302155 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/318 (44%), Positives = 204/318 (64%), Gaps = 6/318 (1%)

Query: 1   MQEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQ-TVLIKNNVYLIGFGKAVLGMAV 59
           M EI+LIY+AAV AV    L+   V    N + I+++  + + NN ++IGFGKAVL MA+
Sbjct: 5   MNEIRLIYKAAVDAVKPGQLVNQAVRCSGNVVKIKEELEIEVDNNCHVIGFGKAVLAMAL 64

Query: 60  EIEAMFRPQRLKGILSVPFG--SVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQ 117
           +++ +     +KGI+S+P G  S   L  QF K     I E A NN+PDE S + T+ I+
Sbjct: 65  QMDTIIGHHMMKGIISIPHGVMSQYSLPDQFLK--RYTIYEGAVNNIPDEESLKATKEIE 122

Query: 118 NFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKL 177
               +  + DV+ VLISGGGSA L+SP   L+L+DK KTI+LL +SGANI+ELN VRKKL
Sbjct: 123 EMASNLKDCDVLFVLISGGGSALLASPVDDLTLDDKQKTIQLLSKSGANIQELNSVRKKL 182

Query: 178 SDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNK 237
           S +KGG+LA++ YPAT V+LI+SD++G PL  IASGPTV N+D  +   +I+ KY L+N+
Sbjct: 183 SRIKGGKLAQLSYPATTVALILSDVIGSPLDVIASGPTVENKDPQNRGWNIIQKYQLENQ 242

Query: 238 VSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGL 297
           +   V   LS  +P  +   F++V N++IG+N  AL  A+  A  +GF T +LS  I+G 
Sbjct: 243 LPVKVAKCLSITSPRNEIS-FDHVRNYLIGSNLTALQAAEAHATQIGFVTAVLSDHIQGE 301

Query: 298 GDDICRGYVDLVAWIDQL 315
             +I + +  +   + Q+
Sbjct: 302 AKEIGKHFAQIARIVAQM 319

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|395518316|ref|XP_003763309.1| PREDICTED: glycerate kinase [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|403291099|ref|XP_003936637.1| PREDICTED: glycerate kinase [Saimiri boliviensis boliviensis] Back     alignment and taxonomy information
>gi|157821525|ref|NP_001102919.1| glycerate kinase [Rattus norvegicus] gi|123792716|sp|Q0VGK3.1|GLCTK_RAT RecName: Full=Glycerate kinase gi|111493971|gb|AAI05622.1| Similar to CG9886-like [Rattus norvegicus] gi|149018692|gb|EDL77333.1| rCG25719, isoform CRA_a [Rattus norvegicus] Back     alignment and taxonomy information
>gi|87128440|gb|ABD22985.1| HBeAg binding protein 4 variant 1 [Homo sapiens] Back     alignment and taxonomy information
>gi|332023307|gb|EGI63561.1| Glycerate kinase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|402859899|ref|XP_003894374.1| PREDICTED: glycerate kinase [Papio anubis] Back     alignment and taxonomy information
>gi|126336646|ref|XP_001380348.1| PREDICTED: glycerate kinase-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|311268984|ref|XP_003132296.1| PREDICTED: glycerate kinase-like [Sus scrofa] Back     alignment and taxonomy information
>gi|307170638|gb|EFN62822.1| Glycerate kinase [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
RGD|1591498523 Glyctk "glycerate kinase" [Rat 0.630 0.562 0.413 9.9e-56
UNIPROTKB|F1SIX9523 GLYCTK "Uncharacterized protei 0.650 0.579 0.401 3.3e-55
MGI|MGI:2444085523 Glyctk "glycerate kinase" [Mus 0.650 0.579 0.398 4.2e-55
UNIPROTKB|Q2KJF7523 GLYCTK "Glycerate kinase" [Bos 0.630 0.562 0.406 8.8e-55
UNIPROTKB|Q8IVS8523 GLYCTK "Glycerate kinase" [Hom 0.671 0.598 0.393 7.2e-52
UNIPROTKB|E1BK74500 GLYCTK "Glycerate kinase" [Bos 0.630 0.588 0.406 1.2e-51
UNIPROTKB|F1P318503 GLYCTK "Uncharacterized protei 0.620 0.574 0.411 5.1e-51
ZFIN|ZDB-GENE-061013-308530 glyctk "glycerate kinase" [Dan 0.645 0.567 0.388 5.2e-49
UNIPROTKB|Q9BE01396 GLYCTK "Glycerate kinase" [Mac 0.489 0.575 0.427 1.4e-42
UNIPROTKB|C9J3N5283 GLYCTK "CG9886-like, isoform C 0.542 0.893 0.410 2.2e-41
RGD|1591498 Glyctk "glycerate kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 551 (199.0 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 126/305 (41%), Positives = 191/305 (62%)

Query:     2 QEIKLIYEAAVSAVNGQNLIQANVHLEKN--KLIIRDQTVLIKNNVYLIGFGKAVLGMAV 59
             ++ + ++++AV AV    ++Q  + L+ +  +L +RD+T  ++ N+YL+GFGKAVLGMA 
Sbjct:    36 EQARQLFDSAVGAVQPGPMLQRTLSLDPSGKQLKVRDRTFQLQENLYLVGFGKAVLGMAA 95

Query:    60 EIEAMFRPQRLKGILSVPFG---SVGILKPQ---FNKNSEIEIRECARNNLPDEASCQNT 113
               + +     ++G++SVP G   +V +   Q      +S I++ E A +NLPD  + +  
Sbjct:    96 AADELLGQHLVQGVISVPKGIRAAVELAGKQEMLLKPHSHIQVFEGAEDNLPDRDALRAA 155

Query:   114 QLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKV 173
             Q IQ   +  T DD++LVLISGGGSA L +P  P++LE+K    KLL   GA I+ELN +
Sbjct:   156 QAIQQLAERLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTKLLAARGATIQELNTI 215

Query:   174 RKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYG 233
             RK LS +KGG LA+  YPA +VSLI+SD++GDPL+ IASGPTV +     D   I+  YG
Sbjct:   216 RKALSQLKGGGLAQAAYPAQVVSLILSDVIGDPLEVIASGPTVASTHSVQDCLHILNHYG 275

Query:   234 LQNKVSKSVMTILSH--ETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILS 291
             L+  + +SV T+LS     PH       +V N IIG+N  AL  A+ +AE LG+  ++LS
Sbjct:   276 LRAALPRSVKTVLSRADSDPH-GPHTCGHVLNVIIGSNSLALAEAQRQAEVLGYHAMVLS 334

Query:   292 SDIEG 296
             + ++G
Sbjct:   335 TAMQG 339
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISO;ISS
GO:0005739 "mitochondrion" evidence=IEA;ISO
GO:0005794 "Golgi apparatus" evidence=IEA;ISO
GO:0006468 "protein phosphorylation" evidence=ISO;ISS
GO:0008887 "glycerate kinase activity" evidence=ISO;ISS
UNIPROTKB|F1SIX9 GLYCTK "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2444085 Glyctk "glycerate kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJF7 GLYCTK "Glycerate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IVS8 GLYCTK "Glycerate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BK74 GLYCTK "Glycerate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P318 GLYCTK "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-308 glyctk "glycerate kinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BE01 GLYCTK "Glycerate kinase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|C9J3N5 GLYCTK "CG9886-like, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O58231GCK_PYRHO2, ., 7, ., 1, ., 1, 6, 50.36060.60300.6386yesN/A
Q09235YQ42_CAEELNo assigned EC number0.32490.64590.6572yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.310.824
3rd Layer2.7.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
pfam13660227 pfam13660, DUF4147, Domain of unknown function (DU 1e-81
COG2379422 COG2379, GckA, Putative glycerate kinase [Carbohyd 2e-69
>gnl|CDD|222296 pfam13660, DUF4147, Domain of unknown function (DUF4147) Back     alignment and domain information 
 Score =  251 bits (644), Expect = 1e-81
 Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 18/240 (7%)

Query: 7   IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
           I++AAV+A + +  ++  + L+   L            + ++G GKA   MA   E    
Sbjct: 6   IFDAAVAAADPERAVRRALPLDPAGLSKYG-------RIVVVGAGKAAAAMAAAAEEAL- 57

Query: 67  PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTED 126
             RL+G++   +G    L         IE+ E A + +PDEA  +  + I   V   TED
Sbjct: 58  GDRLEGLVVTRYGHAVPLPR-------IEVLE-AGHPVPDEAGVRAARRILELVSGLTED 109

Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
           D+VLVLISGGGSA L +P   ++LEDK    + L+ SGA+I+E+N VRK LS +KGG+LA
Sbjct: 110 DLVLVLISGGGSALLPAPAEGITLEDKQAVTRALLASGADIQEINAVRKHLSRIKGGRLA 169

Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
               PA +VSLIISD+ GD L  IASGPTV +   ++DA  I+ +YGL+  + +SV   L
Sbjct: 170 RAAAPARVVSLIISDVPGDDLSVIASGPTVPDPTTFADALAILERYGLE--LPESVRAHL 227

This domain is frequently found at the N-terminus of proteins carrying the glycerate kinase-like domain MOFRL, pfam05161. Length = 227
>gnl|CDD|225254 COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 466
COG2379422 GckA Putative glycerate kinase [Carbohydrate trans 100.0
PF13660238 DUF4147: Domain of unknown function (DUF4147); PDB 100.0
KOG3935|consensus446 100.0
PRK08674337 bifunctional phosphoglucose/phosphomannose isomera 84.76
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 82.2
TIGR00601 378 rad23 UV excision repair protein Rad23. All protei 80.33
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-92  Score=715.29  Aligned_cols=307  Identities=37%  Similarity=0.526  Sum_probs=290.6

Q ss_pred             hHHHHHHHHHHHccCchhHHHhhcccccceeeeecceeccCCCEEEEEechhHHHHHHHHHHHhCCCCcceEEEecCCCc
Q psy16139          2 QEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSV   81 (466)
Q Consensus         2 ~~a~~If~aal~AVdP~~~v~~al~~~~~~L~I~~~~~~l~~~i~VVg~GKAA~~MA~aae~~LG~~i~~GiVvtp~g~~   81 (466)
                      +.+.++|+++|+++||+++++.+|...           +..+|++||||||||++||++++++| +....|+||+|||+.
T Consensus         8 ~~l~~~~~aav~aadP~r~~~~~lp~~-----------~p~gr~~Vig~GKAs~~MA~a~~~~~-~~~~~GvVVt~~g~~   75 (422)
T COG2379           8 AFLLELFDAAVAAADPYRALAAHLPVL-----------PPKGRTIVIGAGKASAEMARAFEEHW-KGPLAGVVVTPYGYG   75 (422)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHhhCCCC-----------CCCCceEEEecchhHHHHHHHHHHHh-ccccCceEeccCccC
Confidence            467899999999999999999999762           12469999999999999999999999 556789999999986


Q ss_pred             cCccCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCcEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHH
Q psy16139         82 GILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLV  161 (466)
Q Consensus        82 ~~~~~~~~~~~~I~V~egA~HPlPDe~Sv~Aa~~ILelv~~l~~~DlVLvLISGGGSALL~~P~~gITLeDk~~lt~~LL  161 (466)
                             .+.++|+|+|+ +||+||++|+.|+++++++++.++++|+||+||||||||||++|.+||||+|++.+|+.||
T Consensus        76 -------~~~~~ieViea-~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~P~eGitL~d~~avn~~LL  147 (422)
T COG2379          76 -------GPCPRIEVIEA-GHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLELPAEGITLEDLIAVNRALL  147 (422)
T ss_pred             -------CCCCceeEEeC-CCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccCCccCCCHHHHHHHHHHHH
Confidence                   35568999997 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCccccCCCCHHHHHHHHHHhCCCccchHH
Q psy16139        162 QSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS  241 (466)
Q Consensus       162 ~sGA~I~EINtVRKhLS~VKGGrLA~~a~pA~vvsLIlSDV~GDdL~~IASGPTvPD~sT~~DAl~IL~ky~L~~~lP~s  241 (466)
                      +|||+|+||||||||||+|||||||++++|++|++||+||||||++++||||||+||+||++||++||++|++|  +|++
T Consensus       148 ~sGA~I~emNtVRkhLS~VKGGrLA~a~~pA~VvsliiSDVpGDd~~~IASGPTv~D~tt~~DAlavl~ry~i~--~p~~  225 (422)
T COG2379         148 KSGAPISEMNTVRKHLSRVKGGRLAAAAKPAKVVSLIISDVPGDDPSVIASGPTVPDPTTREDALAVLERYGIA--LPES  225 (422)
T ss_pred             HcCCChHHHHHHHHHHhhccchHHHHhcCCCeEEEEEEccCCCCCHhhcccCCCCCCCCchHHHHHHHHHhccc--ccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997  9999


Q ss_pred             HHHHHcc---CCCCCCCCCCCCeeEEEEecHHHHHHHHHHHHHhCCCcEEecCCCccccHHHHHHHHHHHHHHHHHhcCC
Q psy16139        242 VMTILSH---ETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQ  318 (466)
Q Consensus       242 V~~~L~~---~~~~~~~~~f~~v~n~IIgsN~~Al~AA~~~A~~lGy~~~ILss~l~GEArevar~laaia~~i~~~~~~  318 (466)
                      |+.||+.   .+|++.+++|++++|+||+||..+|++|++.|+++||+++||++.++|||||+|+++|+|++++.++++|
T Consensus       226 v~~~l~~~~~~t~~~~d~~~~~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~P  305 (422)
T COG2379         226 VRAHLESERAETPKPGDERFANVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRP  305 (422)
T ss_pred             HHHHHhhhcccCCCCCccccccceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCC
Confidence            9999995   2456666899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             c----EEEecCccccc
Q psy16139        319 R----TIQVGKDKNNI  330 (466)
Q Consensus       319 ~----~il~gge~~~~  330 (466)
                      |    +||+||||||-
T Consensus       306 f~~P~~llsGGETTVT  321 (422)
T COG2379         306 FKKPVVLLSGGETTVT  321 (422)
T ss_pred             CCCCEEEEECCceEEE
Confidence            7    99999999985

>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A Back     alignment and domain information
>KOG3935|consensus Back     alignment and domain information
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
1x3l_A440 Crystal Structure Of The Ph0495 Protein From Pyroco 1e-33
2b8n_A429 Crystal Structure Of Glycerate Kinase (ec 2.7.1.31) 2e-31
>pdb|1X3L|A Chain A, Crystal Structure Of The Ph0495 Protein From Pyrococccus Horikoshii Ot3 Length = 440 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 24/305 (7%)
Query: 4   IKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEA 63
           ++L+ EA + A +    +   V +  +K+I++ +   IK  VY+I  GKA   MA  IE 
Sbjct: 11  LRLVGEA-IKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMARAIED 69
Query: 64  MFRPQRLKGILSVPFGSVGILKPQFNKN-SEIEIRECARNNLPDEASCQNTQLIQNFVKH 122
                    IL V  G V + K  + K    I++ E A + +PDE S    +   + +  
Sbjct: 70  ---------ILDVEDG-VAVTKYGYGKELKRIKVIE-AGHPIPDEKSILGAKEALSILNR 118
Query: 123 CTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKG 182
             E+D+V +LISGGGSA    P+  +SLED   T  LL++SGA I E+N VRK +S VKG
Sbjct: 119 ARENDIVFILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKG 178
Query: 183 GQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSV 242
           G+LA+++   T + LIISD+VGD L+ IASGPTV +   + DA+ I+  Y +  KV +SV
Sbjct: 179 GKLAKMI-KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESV 237
Query: 243 MTILSH-------ETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIE 295
              +         ET  +D     NVHN +I +N  +      +A+ LGF+  I+++ +E
Sbjct: 238 RLHIERGLRGEVEETLKED---LPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLE 294
Query: 296 GLGDD 300
           G   D
Sbjct: 295 GEAKD 299
>pdb|2B8N|A Chain A, Crystal Structure Of Glycerate Kinase (ec 2.7.1.31) (tm1585) From Thermotoga Maritima At 2.70 A Resolution Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
1x3l_A440 Hypothetical protein PH0495; structural genomics, 3e-65
2b8n_A429 Glycerate kinase, putative; TM1585, glycerate kina 8e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii} Length = 440 Back     alignment and structure
 Score =  215 bits (549), Expect = 3e-65
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 15/310 (4%)

Query: 7   IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
           +   A+ A +    +   V +  +K+I++ +   IK  VY+I  GKA   MA  IE +  
Sbjct: 13  LVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMARAIEDILD 72

Query: 67  PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTED 126
            +   G+    +G    LK        I++ E   + +PDE S    +   + +    E+
Sbjct: 73  VED--GVAVTKYGYGKELKR-------IKVIEAG-HPIPDEKSILGAKEALSILNRAREN 122

Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
           D+V +LISGGGSA    P+  +SLED   T  LL++SGA I E+N VRK +S VKGG+LA
Sbjct: 123 DIVFILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLA 182

Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
           +++     + LIISD+VGD L+ IASGPTV +   + DA+ I+  Y +  KV +SV   +
Sbjct: 183 KMIKGTG-IVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESVRLHI 241

Query: 247 S----HETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDIC 302
                 E      +   NVHN +I +N  +      +A+ LGF+  I+++ +EG   D  
Sbjct: 242 ERGLRGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAG 301

Query: 303 RGYVDLVAWI 312
                +V  I
Sbjct: 302 LFIGSIVQEI 311
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1 Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
1x3l_A440 Hypothetical protein PH0495; structural genomics, 100.0
2b8n_A429 Glycerate kinase, putative; TM1585, glycerate kina 100.0
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 93.88
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 93.06
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 92.79
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 92.36
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 91.7
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 90.56
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 89.76
2dna_A67 Unnamed protein product; ubiquitin associated doma 88.25
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 84.29
2cwb_A108 Chimera of immunoglobulin G binding protein G and 83.79
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 82.55
1wji_A63 Tudor domain containing protein 3; UBA domain, str 80.15
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
Probab=100.00  E-value=5.2e-96  Score=760.29  Aligned_cols=317  Identities=32%  Similarity=0.460  Sum_probs=300.0

Q ss_pred             hHHHHHHHHHHHccCchhHHHhhcccccceeeeecceeccC-CCEEEEEechhHHHHHHHHHHHhCCCCcceEEEecCCC
Q psy16139          2 QEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIK-NNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGS   80 (466)
Q Consensus         2 ~~a~~If~aal~AVdP~~~v~~al~~~~~~L~I~~~~~~l~-~~i~VVg~GKAA~~MA~aae~~LG~~i~~GiVvtp~g~   80 (466)
                      +++++||++||++++|++++++++...++.|+|+++.| +. +|+|||||||||++||++++++| + +.+|+||||||+
T Consensus         8 ~~l~~if~aav~a~~P~~~v~~~l~~~~~~L~v~~~~~-l~~gr~~vvg~GKAa~~MA~a~e~~~-~-~~~G~Vvt~~g~   84 (440)
T 1x3l_A            8 EIGLRLVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEF-EIKGKVYVIALGKAACEMARAIEDIL-D-VEDGVAVTKYGY   84 (440)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHEEECSSEEEETTEEE-ECCSCEEEEEESTTHHHHHHHHHHHS-C-CSEEEEEEETTC
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHhccccccccccccccc-cCCCCEEEEEEcHHHHHHHHHHHHHh-C-cCceEEEECCCC
Confidence            57899999999999999999999998888999999999 55 69999999999999999999999 4 788999999998


Q ss_pred             ccCccCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCcEEEEEEeCCccccccCCCCCCCHHHHHHHHHHH
Q psy16139         81 VGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLL  160 (466)
Q Consensus        81 ~~~~~~~~~~~~~I~V~egA~HPlPDe~Sv~Aa~~ILelv~~l~~~DlVLvLISGGGSALL~~P~~gITLeDk~~lt~~L  160 (466)
                      .       .+.++|+|+|+ +||+||++|++|+++|++++++++++|+|||||||||||||++|.+||||+||+++|++|
T Consensus        85 ~-------~~~~~i~v~eA-~HPvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSALl~~P~~gitL~dk~~~~~~L  156 (440)
T 1x3l_A           85 G-------KELKRIKVIEA-GHPIPDEKSILGAKEALSILNRARENDIVFILISGGGSALFELPEEGISLEDLKLTTDLL  156 (440)
T ss_dssp             C-------CCCSSSEEEEE-CSSSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHH
T ss_pred             C-------CCCCCeEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHHhhhcCCCCCCHHHHHHHHHHH
Confidence            5       34578999997 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCccccCCCCHHHHHHHHHHhCCCccchH
Q psy16139        161 VQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSK  240 (466)
Q Consensus       161 L~sGA~I~EINtVRKhLS~VKGGrLA~~a~pA~vvsLIlSDV~GDdL~~IASGPTvPD~sT~~DAl~IL~ky~L~~~lP~  240 (466)
                      |+|||+|+|||+||||||+|||||||+++ |++|++|||||||||||++||||||+||+||++||++||+||+||+++|+
T Consensus       157 L~sGA~I~EiN~VRKhLS~iKGGrLA~~a-pA~vvtLiiSDV~GDdl~~IASGPTvpd~tt~~dA~~il~ry~l~~~lp~  235 (440)
T 1x3l_A          157 LKSGAKIHEINTVRKHISKVKGGKLAKMI-KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPE  235 (440)
T ss_dssp             HHTCCCHHHHHHHHHTTBSSTTTHHHHTC-SSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCTTTSCH
T ss_pred             HHcCCCHHHHHHHHHHHhhccchHHHHhC-CCcEEEEEEecCCCCChhheecCCcCCCCCCHHHHHHHHHHhCCcccCCH
Confidence            99999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccC-----CCCCCCCCCCCeeEEEEecHHHHHHHHHHHHHhCCCcEEecCCCccccHHHHHHHHHHHHHHHHHh
Q psy16139        241 SVMTILSHE-----TPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQL  315 (466)
Q Consensus       241 sV~~~L~~~-----~~~~~~~~f~~v~n~IIgsN~~Al~AA~~~A~~lGy~~~ILss~l~GEArevar~laaia~~i~~~  315 (466)
                      +|+++|+.+     ...+. +.|.+++|+|||||..+++||+++|+++||++++++++++|||||+|++|++|+++++..
T Consensus       236 ~v~~~L~~~~~g~~~etpk-~~~~~~~~~iIasn~~al~aAa~~A~~~G~~~~il~~~l~Geareva~~~a~ia~~~~~~  314 (440)
T 1x3l_A          236 SVRLHIERGLRGEVEETLK-EDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAGLFIGSIVQEIAER  314 (440)
T ss_dssp             HHHHHHHHHHHTSSCCSCC-SCCTTEEEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccccCCCC-ccccCceEEEECCHHHHHHHHHHHHHHcCCcEEEecCccceeHHHHHHHHHHHHHHHHhc
Confidence            999999864     12222 378999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCc----EEEecCcccccc
Q psy16139        316 RKQR----TIQVGKDKNNIK  331 (466)
Q Consensus       316 ~~~~----~il~gge~~~~~  331 (466)
                      .+|+    +||+||||||--
T Consensus       315 ~~p~~~P~~llsGGEtTVtv  334 (440)
T 1x3l_A          315 GRPFEPPVVLVFGGETTVTI  334 (440)
T ss_dssp             CCSSCSSEEEEEEECCBCCC
T ss_pred             CCCCCCCeEEEEcCCcEEEe
Confidence            8765    999999999854
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 466
d2b8na1414 c.118.1.1 (A:4-417) Putative glycerate kinase (hyp 1e-70
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} Length = 414 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: GckA/TtuD-like
superfamily: GckA/TtuD-like
family: GckA/TtuD-like
domain: Putative glycerate kinase (hypothetical protein TM1585)
species: Thermotoga maritima [TaxId: 2336]

 Score =  227 bits (581), Expect = 1e-70
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 25/306 (8%)

Query: 7   IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
           I + ++ AV     ++    L K             + V L+  GKA   MA     +  
Sbjct: 11  IVKKSIEAVFPDRAVKE--TLPKLN----------LDRVILVAVGKAAWRMAKAAYEVLG 58

Query: 67  PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTED 126
            +  KG++   +G             + EI E A + +PDE + + T+ +   V    E+
Sbjct: 59  KKIRKGVVVTKYGHSE------GPIDDFEIYE-AGHPVPDENTIKTTRRVLELVDQLNEN 111

Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
           D VL L+SGGGS+    P   +SLE+  K    L++SGA+I+E+N VRK LS VKGG+ A
Sbjct: 112 DTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFA 171

Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
           E V+PA +V+L++SD++GD L  IASGP   +     DA  ++ KYG+  + S+SV   +
Sbjct: 172 ERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSESVKRAI 229

Query: 247 SHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYV 306
             ETP    K+  NV  H+IGN +     AK  A+  GF   I+++ ++    +  R   
Sbjct: 230 LQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIA 285

Query: 307 DLVAWI 312
            ++  +
Sbjct: 286 SIMKEV 291

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
d2b8na1414 Putative glycerate kinase (hypothetical protein TM 100.0
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 90.23
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 84.61
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: GckA/TtuD-like
superfamily: GckA/TtuD-like
family: GckA/TtuD-like
domain: Putative glycerate kinase (hypothetical protein TM1585)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.1e-89  Score=700.85  Aligned_cols=306  Identities=30%  Similarity=0.441  Sum_probs=288.0

Q ss_pred             hHHHHHHHHHHHccCchhHHHhhcccccceeeeecceeccCCCEEEEEechhHHHHHHHHHHHhCCCCcceEEEecCCCc
Q psy16139          2 QEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSV   81 (466)
Q Consensus         2 ~~a~~If~aal~AVdP~~~v~~al~~~~~~L~I~~~~~~l~~~i~VVg~GKAA~~MA~aae~~LG~~i~~GiVvtp~g~~   81 (466)
                      +++++||+++|++|+|+++|+++++..+            .+|+|||||||||.+||++++++||+++.+|+|++|+++.
T Consensus         6 ~~~~~if~a~v~av~P~~~v~~~l~~~~------------~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~   73 (414)
T d2b8na1           6 KLAIEIVKKSIEAVFPDRAVKETLPKLN------------LDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHS   73 (414)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHTTHHHHC------------CCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCC
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHhCCcCC------------CCCEEEEEEhHHHHHHHHHHHHHhCccCCceEEEeCCCcC
Confidence            5789999999999999999999987543            3599999999999999999999999999999999999975


Q ss_pred             cCccCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCcEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHH
Q psy16139         82 GILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLV  161 (466)
Q Consensus        82 ~~~~~~~~~~~~I~V~egA~HPlPDe~Sv~Aa~~ILelv~~l~~~DlVLvLISGGGSALL~~P~~gITLeDk~~lt~~LL  161 (466)
                      .      .+.++|++++| +||+||++|++||++|++++++++++|+||||||||||||+|+|.+||||+||++++++|+
T Consensus        74 ~------~~~~~i~v~~a-~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll  146 (414)
T d2b8na1          74 E------GPIDDFEIYEA-GHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALL  146 (414)
T ss_dssp             C------SCCTTCEEEEE-CSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHH
T ss_pred             C------CCCCCeEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEeeCCcccchhcCCCCCCHHHHHHHHHHHH
Confidence            2      34578999998 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCccccCCCCHHHHHHHHHHhCCCccchHH
Q psy16139        162 QSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS  241 (466)
Q Consensus       162 ~sGA~I~EINtVRKhLS~VKGGrLA~~a~pA~vvsLIlSDV~GDdL~~IASGPTvPD~sT~~DAl~IL~ky~L~~~lP~s  241 (466)
                      +|||+|+|||+||||||+|||||||++++|+++++||+||||||||++||||||+||++|++||++||+||++|  +|++
T Consensus       147 ~sGA~I~eiN~VRk~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~--~p~~  224 (414)
T d2b8na1         147 KSGASIEEINTVRKHLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIE--TSES  224 (414)
T ss_dssp             HTTCCHHHHHHHHHTTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCC--CCHH
T ss_pred             hCCCCHHHHHHHHHHHHhccccHHHHHhccCceEEEEEecCCCCCchheecCCcCCCCCCHHHHHHHHHHcCCC--CChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995  8999


Q ss_pred             HHHHHccCCCCCCCCCCCCeeEEEEecHHHHHHHHHHHHHhCCCcEEecCCCccccHHHHHHHHHHHHHHHHHhcC----
Q psy16139        242 VMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRK----  317 (466)
Q Consensus       242 V~~~L~~~~~~~~~~~f~~v~n~IIgsN~~Al~AA~~~A~~lGy~~~ILss~l~GEArevar~laaia~~i~~~~~----  317 (466)
                      |++++.+.    .++.|.+++|+|||||..++++|+++|+++||++++++++++|||+++|++++++++++.....    
T Consensus       225 v~~~l~~~----~~~~~~~v~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~  300 (414)
T d2b8na1         225 VKRAILQE----TPKHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKK  300 (414)
T ss_dssp             HHHHHTSC----CCSCCSSEEEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCS
T ss_pred             HHHhhccc----CCccccccceEEecCHHHHHHHHHHHHHHcCCceEEecccccCcHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999753    3357899999999999999999999999999999999999999999999999999999987764    


Q ss_pred             CcEEEecCcccccch
Q psy16139        318 QRTIQVGKDKNNIKE  332 (466)
Q Consensus       318 ~~~il~gge~~~~~~  332 (466)
                      |..|++||||||--.
T Consensus       301 p~~li~GGEtTV~v~  315 (414)
T d2b8na1         301 PAALIFGGETVVHVK  315 (414)
T ss_dssp             SEEEEEEECCBCCCC
T ss_pred             CeEEEEcceeEEEec
Confidence            559999999998653
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure