Psyllid ID: psy16144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MKSLSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLRT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKSLSVDTMQIIQTIAEWHFLLYLlpwrweplsaglrkkqYISSATNiynlfpddaVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTImkahpsypkvHKQIFEKAMVHLRT
Flexible Loop (DISEMBL)
MKSLSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTimkahpsypkVHKQIFEKAMVHLRT
Low Complexity Region (SEG)
MKSLSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDlalhqklaslllRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLRT
Disordered region (IsUnstruct)
******DTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE********
Disordered Region (DISOPRED)
********MQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLR*
Disordered Region (DISEMBL)
MKSLSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLRT
Disordered Region (DISPRO)
***LSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSLSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q0HA38	1315	Tetratricopeptide repeat	yes	N/A	0.549	0.050	0.417	7e-08
Q7Z4L5	1316	Tetratricopeptide repeat	yes	N/A	0.549	0.050	0.388	1e-07
Q6INC1	1312	Tetratricopeptide repeat	N/A	N/A	0.549	0.051	0.373	2e-06
Q8NDW8	1320	Tetratricopeptide repeat	no	N/A	0.549	0.050	0.373	6e-06
Q8C0S4	1314	Tetratricopeptide repeat	no	N/A	0.549	0.050	0.358	2e-05

>sp|Q0HA38|TT21B_MOUSE Tetratricopeptide repeat protein 21B OS=Mus musculus GN=Ttc21b PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA   Y  A +    ++ A+  KLA   L+ KRY +AIDV   +++AHP+YPK+ K I +
Sbjct: 1248 DAAFNYEMAWKHSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTYPKIRKDILD 1307

Query: 115  KAMVHLR 121
            KA   LR
Sbjct: 1308 KARASLR 1314

May negatively modulate SHH signal transduction and may play a role in retrograde intraflagellar transport in cilia.
Mus musculus (taxid: 10090)

>sp|Q7Z4L5|TT21B_HUMAN Tetratricopeptide repeat protein 21B OS=Homo sapiens GN=TTC21B PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA + Y  A +    ++ A+  KLA   L+ KRY ++ID+   +++AHP+YPK+ K I +
Sbjct: 1249 DAALNYEMAWKYSNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1308

Query: 115  KAMVHLR 121
            KA   LR
Sbjct: 1309 KARASLR 1315

May negatively modulate SHH signal transduction and may play a role in retrograde intraflagellar transport in cilia.

Homo sapiens (taxid: 9606)

>sp|Q6INC1|TT21B_XENLA Tetratricopeptide repeat protein 21B OS=Xenopus laevis GN=ttc21b PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA   Y  A      S+ A+  +LA   L+ K+Y +AID+   ++KAHP+YPK+ ++I  
Sbjct: 1245 DAAANYRLAWDYSNQSNPAVGFRLAFNYLKDKKYVDAIDICHKVLKAHPTYPKIEREILA 1304

Query: 115  KAMVHLR 121
            KA   L+
Sbjct: 1305 KAQTSLK 1311

Xenopus laevis (taxid: 8355)

>sp|Q8NDW8|TT21A_HUMAN Tetratricopeptide repeat protein 21A OS=Homo sapiens GN=TTC21A PE=2 SV=3

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DAV  Y  A +    ++ A+  KLA   L+ K++ EAI++   +++ HP YPK+ ++I E
Sbjct: 1253 DAVTNYKLAWKYSHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILE 1312

Query: 115  KAMVHLR 121
            KA   LR
Sbjct: 1313 KARRSLR 1319

Homo sapiens (taxid: 9606)

>sp|Q8C0S4|TT21A_MOUSE Tetratricopeptide repeat protein 21A OS=Mus musculus GN=Ttc21a PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA   Y  A +    ++ A+  KLA   L+ K++ +AI+V  +++  HP YPK+ ++I E
Sbjct: 1247 DAATNYELAWKYSHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPKIREEILE 1306

Query: 115  KAMVHLR 121
            KA   LR
Sbjct: 1307 KAQGSLR 1313

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
357611409	1146	hypothetical protein KGM_03531 [Danaus p	0.549	0.058	0.462	7e-09
242006910	1312	TPR repeat-containing protein ZK328.7, p	0.557	0.051	0.441	3e-08
189234745	1318	PREDICTED: similar to tetratricopeptide	0.549	0.050	0.417	1e-07
270001547	1319	hypothetical protein TcasGA2_TC000391 [T	0.549	0.050	0.417	1e-07
383856356	1310	PREDICTED: tetratricopeptide repeat prot	0.557	0.051	0.411	3e-07
296204660	1315	PREDICTED: tetratricopeptide repeat prot	0.549	0.050	0.432	3e-07
328777856	1311	PREDICTED: tetratricopeptide repeat prot	0.557	0.051	0.397	6e-07
350593557	355	PREDICTED: tetratricopeptide repeat prot	0.549	0.188	0.432	7e-07
326922826	1352	PREDICTED: tetratricopeptide repeat prot	0.557	0.050	0.411	7e-07
307191462	1308	Tetratricopeptide repeat protein 21B [Ca	0.557	0.051	0.397	7e-07

>gi|357611409|gb|EHJ67466.1| hypothetical protein KGM_03531 [Danaus plexippus]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 56   AVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEK 115
            + V Y  A +  G +DLA+  KLA   L++K+Y E I V + I+K HP YPK+ K+I EK
Sbjct: 1080 SAVNYDNAWKYTGKNDLAVGYKLAYAYLKLKKYPECIVVCRHILKVHPDYPKIKKEILEK 1139

Query: 116  AMVHLRT 122
            A  +LRT
Sbjct: 1140 AKTNLRT 1146

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006910|ref|XP_002424285.1| TPR repeat-containing protein ZK328.7, putative [Pediculus humanus corporis] gi|212507685|gb|EEB11547.1| TPR repeat-containing protein ZK328.7, putative [Pediculus humanus corporis]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 45/68 (66%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA +QY  A R    ++ ++  KLA   ++ KRYA+AI+V  TI+K +P YP++ K+I E
Sbjct: 1245 DAALQYENAWRYCNQTNPSIGYKLAFNYMKCKRYADAIEVCYTIIKQYPDYPRIQKEILE 1304

Query: 115  KAMVHLRT 122
            KA  +LRT
Sbjct: 1305 KAKTNLRT 1312

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234745|ref|XP_974217.2| PREDICTED: similar to tetratricopeptide repeat domain 21B [Tribolium castaneum]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DAVV Y  A R  G +++ +  KLA  L++ K YA+AIDV Q ++K  P Y K+ K + +
Sbjct: 1251 DAVVSYEAAWRFGGKTNVGIGYKLAYSLMKSKNYADAIDVGQQVLKLSPDYGKIKKDVLD 1310

Query: 115  KAMVHLR 121
            K + +LR
Sbjct: 1311 KCLNNLR 1317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001547|gb|EEZ97994.1| hypothetical protein TcasGA2_TC000391 [Tribolium castaneum]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DAVV Y  A R  G +++ +  KLA  L++ K YA+AIDV Q ++K  P Y K+ K + +
Sbjct: 1252 DAVVSYEAAWRFGGKTNVGIGYKLAYSLMKSKNYADAIDVGQQVLKLSPDYGKIKKDVLD 1311

Query: 115  KAMVHLR 121
            K + +LR
Sbjct: 1312 KCLNNLR 1318

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856356|ref|XP_003703675.1| PREDICTED: tetratricopeptide repeat protein 21B [Megachile rotundata]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            +A +QY+QA +  G S L++  KLA   ++ K YA+ I+    I+K  P YP+V K+I E
Sbjct: 1243 EAALQYSQAWKYGGKSKLSIAYKLAYCSMKAKSYADGIEACNEILKQSPDYPRVKKEILE 1302

Query: 115  KAMVHLRT 122
            K + +LRT
Sbjct: 1303 KCINNLRT 1310

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296204660|ref|XP_002749424.1| PREDICTED: tetratricopeptide repeat protein 21B [Callithrix jacchus]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA + Y  A +    ++LA+  KLA   L+ KRY ++IDV   I+KAHP+YP++ K I +
Sbjct: 1248 DAALNYEMAWKYSHQTNLAIGYKLAFNYLKAKRYVDSIDVCHQILKAHPTYPRIRKDILD 1307

Query: 115  KAMVHLR 121
            KA   LR
Sbjct: 1308 KARASLR 1314

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328777856|ref|XP_396105.4| PREDICTED: tetratricopeptide repeat protein 21B [Apis mellifera]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            +A  QY QA +  G S L++  KLA   ++ K YA+ I+    I+K +P YP++ K+I E
Sbjct: 1244 EAASQYNQAWKYGGKSKLSVAYKLAYCSMKAKAYADGIEACNEILKQNPDYPRIKKEILE 1303

Query: 115  KAMVHLRT 122
            K + +LRT
Sbjct: 1304 KCINNLRT 1311

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350593557|ref|XP_003133497.3| PREDICTED: tetratricopeptide repeat protein 21B-like [Sus scrofa]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 55  DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
           DA + Y  A +    ++ A+  KLA   L+ KRY +AIDV   ++KAHP+YPK+ K I +
Sbjct: 288 DAALNYEMAWKHGNQANPAVGYKLAFNYLKAKRYVDAIDVCHQVLKAHPAYPKIRKDILD 347

Query: 115 KAMVHLR 121
           KA   LR
Sbjct: 348 KARACLR 354

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326922826|ref|XP_003207645.1| PREDICTED: tetratricopeptide repeat protein 21B-like [Meleagris gallopavo]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            DA + Y  A R    S+  +  KLA   L+ KRY +AI +   +++AHP+YPK+ K+I +
Sbjct: 1285 DAAINYEMAWRYGNQSNPTIGYKLAFNYLKGKRYVDAITICHKVLEAHPNYPKIRKEILD 1344

Query: 115  KAMVHLRT 122
            KA   LRT
Sbjct: 1345 KARASLRT 1352

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307191462|gb|EFN75003.1| Tetratricopeptide repeat protein 21B [Camponotus floridanus]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 55   DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
            +A  +Y QA +  G + L++  KLA   L+ K YAEAID    ++K +  YP++ K I E
Sbjct: 1241 EAATRYAQAWKCGGKTKLSIGYKLAYCCLKAKAYAEAIDACNEVLKQNADYPRIRKDILE 1300

Query: 115  KAMVHLRT 122
            K + +LRT
Sbjct: 1301 KCINNLRT 1308

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
UNIPROTKB|F1NPR6	1319	TTC21B "Uncharacterized protei	0.549	0.050	0.343	1.3e-05
MGI|MGI:1920918	1315	Ttc21b "tetratricopeptide repe	0.549	0.050	0.343	1.7e-05
RGD|1565122	1315	Ttc21b "tetratricopeptide repe	0.549	0.050	0.343	1.7e-05
UNIPROTKB|Q7Z4L5	1316	TTC21B "Tetratricopeptide repe	0.549	0.050	0.313	1.7e-05
UNIPROTKB|F6PR93	1316	TTC21B "Uncharacterized protei	0.549	0.050	0.328	4.5e-05
UNIPROTKB|Q6INC1	1312	ttc21b "Tetratricopeptide repe	0.549	0.051	0.313	0.00012
UNIPROTKB|A9XPA6	1355	IFT139 "Intraflagellar transpo	0.549	0.049	0.328	0.00016

UNIPROTKB|F1NPR6 TTC21B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA + Y  A R    S+            + KRY +AI +   +++AHP+YPK+ K+I +
Sbjct:  1252 DAAINYEMAWRYGNQSNPTIGYKLAFNYLKGKRYVDAIAICHKVLEAHPNYPKIRKEILD 1311

Query:   115 KAMVHLR 121
             KA   LR
Sbjct:  1312 KARASLR 1318

GO:0005929 "cilium" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0042073 "intraflagellar transport" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

MGI|MGI:1920918 Ttc21b "tetratricopeptide repeat domain 21B" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA   Y  A +    ++            + KRY +AIDV   +++AHP+YPK+ K I +
Sbjct:  1248 DAAFNYEMAWKHSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTYPKIRKDILD 1307

Query:   115 KAMVHLR 121
             KA   LR
Sbjct:  1308 KARASLR 1314

GO:0005622 "intracellular" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0042073 "intraflagellar transport" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IMP

RGD|1565122 Ttc21b "tetratricopeptide repeat domain 21B" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA   Y  A +    ++            + KRY +AIDV   +++AHP+YPK+ K I +
Sbjct:  1248 DAAFNYEMAWKHSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTYPKIRKDILD 1307

Query:   115 KAMVHLR 121
             KA   LR
Sbjct:  1308 KARASLR 1314

GO:0005622 "intracellular" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0042073 "intraflagellar transport" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

UNIPROTKB|Q7Z4L5 TTC21B "Tetratricopeptide repeat protein 21B" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA + Y  A +    ++            + KRY ++ID+   +++AHP+YPK+ K I +
Sbjct:  1249 DAALNYEMAWKYSNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1308

Query:   115 KAMVHLR 121
             KA   LR
Sbjct:  1309 KARASLR 1315

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0042073 "intraflagellar transport" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0030991 "intraflagellar transport particle A" evidence=IDA

UNIPROTKB|F6PR93 TTC21B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA + Y  A +    ++            + KRY +AID+   +++AHP+YPK+ K I +
Sbjct:  1249 DAALNYEIAWKHGNQTNPAVGYKLAFNYLKAKRYVDAIDICHQVLEAHPTYPKIRKDILD 1308

Query:   115 KAMVHLR 121
             KA   LR
Sbjct:  1309 KARTSLR 1315

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0042073 "intraflagellar transport" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q6INC1 ttc21b "Tetratricopeptide repeat protein 21B" [Xenopus laevis (taxid:8355)]

 Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA   Y  A      S+            + K+Y +AID+   ++KAHP+YPK+ ++I  
Sbjct:  1245 DAAANYRLAWDYSNQSNPAVGFRLAFNYLKDKKYVDAIDICHKVLKAHPTYPKIEREILA 1304

Query:   115 KAMVHLR 121
             KA   L+
Sbjct:  1305 KAQTSLK 1311

GO:0030991 "intraflagellar transport particle A" evidence=ISS

UNIPROTKB|A9XPA6 IFT139 "Intraflagellar transport protein 139" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query:    55 DAVVQYTQACRIIGTSDXXXXXXXXXXXXRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
             DA   Y  A +    +             + +RY EA+DV   ++KA P YPK+ K+I E
Sbjct:  1288 DAADHYENAWKHENQASAQVGFKLAFNYLKARRYVEAVDVCHKVIKAFPDYPKIRKEILE 1347

Query:   115 KAMVHLR 121
             KA + L+
Sbjct:  1348 KARMGLK 1354


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       110   0.00091  102 3  11 22  0.39    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:14
  No. of threads or processors used:  24
  Search cpu time:  9.27u 0.08s 9.35t   Elapsed:  00:00:08
  Total cpu time:  9.27u 0.08s 9.35t   Elapsed:  00:00:22
  Start:  Thu Aug 15 13:07:35 2013   End:  Thu Aug 15 13:07:57 2013

GO:0030991 "intraflagellar transport particle A" evidence=TAS

GO:0031514 "motile cilium" evidence=IDA

GO:0097014 "microtubule-based flagellar cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.26
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.23
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
KOG0553|consensus	304		99.07
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.06
PRK12370	553	invasion protein regulator; Provisional	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.03
PRK12370	553	invasion protein regulator; Provisional	99.02
PRK15359	144	type III secretion system chaperone protein SscB;	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.97
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.91
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.88
PRK15331	165	chaperone protein SicA; Provisional	98.87
KOG4626|consensus	966		98.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.83
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.81
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.77
PRK10803	263	tol-pal system protein YbgF; Provisional	98.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.72
KOG1125|consensus	579		98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.66
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.65
KOG4626|consensus	966		98.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.63
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.61
KOG1155|consensus	559		98.61
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.6
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.6
PRK11189	296	lipoprotein NlpI; Provisional	98.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.53
KOG1126|consensus	638		98.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.48
PF13428	44	TPR_14: Tetratricopeptide repeat	98.45
KOG1173|consensus	611		98.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.4
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
KOG1125|consensus	579		98.34
PLN02789	320	farnesyltranstransferase	98.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.28
PLN02789	320	farnesyltranstransferase	98.26
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.26
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.25
KOG1126|consensus	638		98.24
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.23
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.22
KOG1155|consensus	559		98.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.16
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.16
PRK14574	822	hmsH outer membrane protein; Provisional	98.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.14
PF13371	73	TPR_9: Tetratricopeptide repeat	98.14
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
KOG1840|consensus	508		98.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.13
KOG0553|consensus	304		98.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.09
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.05
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.03
PF13431	34	TPR_17: Tetratricopeptide repeat	98.02
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.02
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.0
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.99
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.98
PF13512	142	TPR_18: Tetratricopeptide repeat	97.97
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.94
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.92
KOG0548|consensus	539		97.89
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.89
KOG0543|consensus	397		97.89
KOG2076|consensus	895		97.87
PRK10803	263	tol-pal system protein YbgF; Provisional	97.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
KOG4162|consensus	799		97.77
KOG2076|consensus	895		97.77
KOG0624|consensus	504		97.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.69
KOG0548|consensus	539		97.66
PRK11906	458	transcriptional regulator; Provisional	97.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.55
KOG0543|consensus	397		97.55
KOG4234|consensus	271		97.55
KOG0550|consensus	486		97.55
PF13428	44	TPR_14: Tetratricopeptide repeat	97.48
KOG0547|consensus	606		97.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.46
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.46
PRK11906	458	transcriptional regulator; Provisional	97.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.37
KOG0547|consensus	606		97.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
KOG1128|consensus	777		97.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.3
KOG0495|consensus	913		97.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.28
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
KOG2003|consensus	840		97.22
KOG1840|consensus	508		97.19
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.19
KOG1173|consensus	611		97.18
PRK15331	165	chaperone protein SicA; Provisional	97.15
KOG2002|consensus	1018		97.14
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.06
PF12688	120	TPR_5: Tetratrico peptide repeat	97.06
KOG1128|consensus	777		97.03
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.02
KOG0624|consensus	504		96.99
KOG1174|consensus	564		96.97
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.96
KOG4340|consensus	459		96.93
KOG0376|consensus	476		96.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.85
KOG3060|consensus	289		96.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.83
KOG1127|consensus	1238		96.83
KOG1129|consensus	478		96.77
KOG3060|consensus	289		96.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.75
KOG1156|consensus	700		96.71
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.69
KOG2002|consensus	1018		96.67
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.65
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.65
KOG1174|consensus	564		96.6
KOG4162|consensus	799		96.56
KOG3081|consensus	299		96.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.36
KOG0495|consensus	913		96.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.19
KOG4648|consensus	536		96.13
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.12
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.06
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.03
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.01
PLN03077	857	Protein ECB2; Provisional	95.98
KOG4642|consensus	284		95.96
PLN03218	1060	maturation of RBCL 1; Provisional	95.95
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.94
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.91
PLN03077	857	Protein ECB2; Provisional	95.89
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.83
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.83
KOG2471|consensus	696		95.81
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.77
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.7
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.69
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.64
KOG2003|consensus	840		95.63
KOG1127|consensus	1238		95.6
KOG2396|consensus	568		95.51
PLN03218	1060	maturation of RBCL 1; Provisional	95.51
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.46
KOG4234|consensus	271		95.44
PF13512	142	TPR_18: Tetratricopeptide repeat	95.42
KOG4555|consensus	175		95.42
PHA02537	230	M terminase endonuclease subunit; Provisional	95.33
KOG1129|consensus	478		95.19
KOG1156|consensus	700		95.18
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.15
KOG4642|consensus	284		95.13
KOG4507|consensus	886		95.04
KOG0545|consensus	329		94.9
KOG4648|consensus	536		94.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.27
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.27
KOG2053|consensus	932		94.21
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.86
KOG2376|consensus	652		93.6
PRK04841	903	transcriptional regulator MalT; Provisional	93.58
KOG2376|consensus	652		93.47
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.2
KOG1585|consensus	308		93.07
COG4700	251	Uncharacterized protein conserved in bacteria cont	92.98
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.95
KOG0550|consensus	486		92.82
KOG3824|consensus	472		92.72
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.39
KOG0551|consensus	390		92.37
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.3
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.28
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.25
KOG3364|consensus	149		91.65
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.43
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.14
PRK04841	903	transcriptional regulator MalT; Provisional	91.13
KOG4340|consensus	459		91.01
KOG0551|consensus	390		90.81
KOG1586|consensus	288		90.72
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.4
KOG1941|consensus	518		90.18
PRK10941	269	hypothetical protein; Provisional	89.53
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.44
COG4700	251	Uncharacterized protein conserved in bacteria cont	89.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.78
KOG3785|consensus	557		88.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	87.96
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.65
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.56
KOG2796|consensus	366		87.42
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.09
KOG2053|consensus	932		87.07
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.59
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.47
KOG3785|consensus	557		86.46
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.26
KOG0376|consensus	476		86.25
KOG3807|consensus	556		86.19
COG5191	435	Uncharacterized conserved protein, contains HAT (H	86.13
KOG1308|consensus	377		85.97
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.38
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.23
KOG1308|consensus	377		85.21
KOG3824|consensus	472		84.75
KOG1070|consensus	1710		84.46
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	83.76
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.67
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	83.6
KOG2422|consensus	665		83.49
KOG4555|consensus	175		83.48
KOG1070|consensus	1710		82.67
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.45
PRK10941	269	hypothetical protein; Provisional	82.17
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	81.83
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	81.27
COG3898	531	Uncharacterized membrane-bound protein [Function u	81.15
KOG1585|consensus	308		80.98

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=2.9e-13  Score=98.28  Aligned_cols=94  Identities=13%  Similarity=-0.066  Sum_probs=86.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.+.++ ++..+|.+..+|..+         |++|...|++|+++ +|+++.+.+.||.+|...|++.+|
T Consensus        33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence            7889999999999999 999999999999844         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAM  117 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~  117 (122)
                      +..|+++++..|++|... ++...++
T Consensus       112 i~~~~~Al~~~p~~~~~~-~~~~~~~  136 (144)
T PRK15359        112 REAFQTAIKMSYADASWS-EIRQNAQ  136 (144)
T ss_pred             HHHHHHHHHhCCCChHHH-HHHHHHH
Confidence            999999999999998876 3444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.33  E-value=5e-11  Score=82.86  Aligned_cols=95  Identities=14%  Similarity=0.115  Sum_probs=85.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+++.|++++|.+.++ ++..+|..+.+|..+         |++|...|+++.+. +|+++.+.+.+|..|...|++.+|
T Consensus        26 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        26 NLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DPDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHcCCHHHH
Confidence            8889999999999999 999999999998744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAMV  118 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~~  118 (122)
                      +..++++++.+|+.+..+. +..++..
T Consensus       105 ~~~~~~al~~~p~~~~~~~-~~~~~~~  130 (135)
T TIGR02552       105 LKALDLAIEICGENPEYSE-LKERAEA  130 (135)
T ss_pred             HHHHHHHHHhccccchHHH-HHHHHHH
Confidence            9999999999999988652 4444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.31  E-value=2.8e-11  Score=91.12  Aligned_cols=106  Identities=11%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHH
Q psy16144         10 QIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQK   77 (122)
Q Consensus        10 ~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgyk   77 (122)
                      +|-+++..+|-+  ..-++|++++|+.+++ ...++|.+..+|.-+         |.+|+..|..|..+ +|+||..-+.
T Consensus        30 ~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~ddp~~~~~  108 (157)
T PRK15363         30 DVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDAPQAPWA  108 (157)
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHH
Confidence            345666777777  6667899999999999 999999999999844         99999999999999 6999999999


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcc
Q psy16144         78 LASLLLRMKRYAEAIDVSQTIMKAH---PSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        78 LA~~ylk~kr~~~AI~vc~kVL~~~---P~ypkir~~il~ka~~~l  120 (122)
                      +|.+|++.|+...|...++.|+..-   |.+..+    -++|...|
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l----~~~A~~~L  150 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQIL----RQRAEKML  150 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHH----HHHHHHHH
Confidence            9999999999999999999999876   445444    45555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.26  E-value=6.5e-11  Score=94.62  Aligned_cols=85  Identities=15%  Similarity=0.065  Sum_probs=81.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|...++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+++|.+|...|++.+|
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            8999999999999999 999999999999844         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q psy16144         92 IDVSQTIMKAHPSYPK  107 (122)
Q Consensus        92 I~vc~kVL~~~P~ypk  107 (122)
                      +..|+++++.+|++|.
T Consensus       152 ~~~~~~al~~~P~~~~  167 (296)
T PRK11189        152 QDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            9999999999999983

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.23  E-value=1.1e-10  Score=96.26  Aligned_cols=97  Identities=9%  Similarity=0.040  Sum_probs=87.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -+...|+|++|.++++ +++.+|+++.+|..+         |++|...+++|+++ +|+++.+.+.||.+|...|+|.+|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHHHH
Confidence            4556799999999999 999999999988743         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~~~l  120 (122)
                      +..++++++.+|+++.++.- +.+|...|
T Consensus        90 ~~~~~~al~l~P~~~~~~~~-l~~~~~kl  117 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKL-IKECDEKI  117 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHH-HHHHHHHH
Confidence            99999999999999999764 45555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.22  E-value=1.7e-10  Score=88.07  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=81.6

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC------------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF------------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      -|..|  +|...|++++|.+.++ +++++|+++.++..+            +++|...+++|.+. +|+++.+.+.||+.
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-dP~~~~al~~LA~~  153 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-DANEVTALMLLASD  153 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCCChhHHHHHHHH
Confidence            47777  9999999999999999 999999988888732            48999999999999 89999999999999


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      +.+.|+|.+|+..++++|+.+|...
T Consensus       154 ~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        154 AFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.16  E-value=9.3e-10  Score=73.69  Aligned_cols=87  Identities=15%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~   85 (122)
                      .+.+.|++++|.+.|+ +++.+|++.   .++..+         |++|...|+.+... .|++   +.+.+.+|.+|.+.
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~   89 (119)
T TIGR02795        11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKSPKAPDALLKLGMSLQEL   89 (119)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCCCcccHHHHHHHHHHHHh
Confidence            7788999999999999 999999863   344322         99999999999998 5765   67899999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |++.+|+..++++++.+|+++.+.
T Consensus        90 ~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        90 GDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             CChHHHHHHHHHHHHHCcCChhHH
Confidence            999999999999999999988764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.12  E-value=8.6e-10  Score=95.36  Aligned_cols=89  Identities=20%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|++..+|..+         |++|...|++|++. +|+++.+.+.+|..|...|++.+|
T Consensus       340 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A  418 (615)
T TIGR00990       340 FKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQA  418 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            7788899999999999 999999888777633         88899999999888 788899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..|+++++.+|+++.++..
T Consensus       419 ~~~~~kal~l~P~~~~~~~~  438 (615)
T TIGR00990       419 GKDYQKSIDLDPDFIFSHIQ  438 (615)
T ss_pred             HHHHHHHHHcCccCHHHHHH
Confidence            99999999999988777543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.10  E-value=7.4e-10  Score=99.01  Aligned_cols=88  Identities=13%  Similarity=0.024  Sum_probs=83.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +..+.|++|+|+.+++ +++..|+...|+-.+         +++|...+++++.. +|+++.+.+.+|-++.+.|+|++|
T Consensus        95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179         95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhcchHHH
Confidence            8899999999999999 999999999999855         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      +++|+++++.+|+++.++.
T Consensus       174 ~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        174 DACFERLSRQHPEFENGYV  192 (694)
T ss_pred             HHHHHHHHhcCCCcHHHHH
Confidence            9999999999999998864

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=1.8e-09  Score=65.72  Aligned_cols=82  Identities=13%  Similarity=0.246  Sum_probs=75.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.+.++ +++.+|+...++..+         +++|...|+.+... .|.++.+.+.+|..+...|++.+|
T Consensus         9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a   87 (100)
T cd00189           9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEA   87 (100)
T ss_pred             HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHH
Confidence            6778899999999999 999999987776633         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q psy16144         92 IDVSQTIMKAHPS  104 (122)
Q Consensus        92 I~vc~kVL~~~P~  104 (122)
                      ...+.++++.+|+
T Consensus        88 ~~~~~~~~~~~~~  100 (100)
T cd00189          88 LEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHccCCC
Confidence            9999999999884

>KOG0553|consensus

Probab=99.07  E-value=6.1e-10  Score=91.22  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      =..+.++|.+|++... +++++|.++-.|+     |+    |++|++--+.|+.+ +|+...+.-+||.+|+-.|+|++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHccCcHHHH
Confidence            3567799999999999 9999999888887     33    99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAMVHLR  121 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~~~lr  121 (122)
                      |+-|+|+|.++|+++ +.++=|+.|+..+|
T Consensus       169 ~~aykKaLeldP~Ne-~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  169 IEAYKKALELDPDNE-SYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHhhhccCCCcH-HHHHHHHHHHHHhc
Confidence            999999999999998 66678899988776

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.06  E-value=1.4e-09  Score=83.14  Aligned_cols=86  Identities=14%  Similarity=0.137  Sum_probs=77.9

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhccc--HHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL-LLRMKR--YAEA   91 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~-ylk~kr--~~~A   91 (122)
                      ..++.+++...++ +++.||+++.+|..+         |++|...|++|.++ +|+++.+.+.+|.+ |...|+  +.+|
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4566789999999 999999999999955         99999999999999 79999999999997 478888  5999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +.+++++++.+|+++.++..
T Consensus       130 ~~~l~~al~~dP~~~~al~~  149 (198)
T PRK10370        130 REMIDKALALDANEVTALML  149 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHH
Confidence            99999999999999988654

>PRK12370 invasion protein regulator; Provisional

Probab=99.06  E-value=2.2e-09  Score=92.54  Aligned_cols=84  Identities=10%  Similarity=0.005  Sum_probs=68.6

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      +.+++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ +|+++.+.+.||..|...|++++|+..
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4456888888888 888888888887633         88888888888888 688888888888888888888888888


Q ss_pred             HHHHHHhCCCCHHHH
Q psy16144         95 SQTIMKAHPSYPKVH  109 (122)
Q Consensus        95 c~kVL~~~P~ypkir  109 (122)
                      ++++++.+|++|...
T Consensus       395 ~~~Al~l~P~~~~~~  409 (553)
T PRK12370        395 INECLKLDPTRAAAG  409 (553)
T ss_pred             HHHHHhcCCCChhhH
Confidence            888888888877653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=1.5e-09  Score=100.15  Aligned_cols=90  Identities=13%  Similarity=0.088  Sum_probs=77.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++.+.|++++|++.++ +++.+|+++.++..+         +++|...|++|+++ +|+++.+.+.||..|...|++++|
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            7888888888888888 888888888877733         88899999999998 789999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      ++.|+++++..|+.+.|...+
T Consensus       697 ~~~l~~Al~l~P~~a~i~~~~  717 (987)
T PRK09782        697 QHYARLVIDDIDNQALITPLT  717 (987)
T ss_pred             HHHHHHHHhcCCCCchhhhhh
Confidence            999999999999888887443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.04  E-value=2.5e-09  Score=92.53  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=79.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...|++++|.+.++ +++.+|+++.+|..+         |++|...|++|.++ +|++..+.+.||..|.+.|++.+|
T Consensus       374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHCCCHHHH
Confidence            7888899999999999 999999998888744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..++++++.+|++|.+...
T Consensus       453 ~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       453 MATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             HHHHHHHHHhCCCChHHHHH
Confidence            99999999999998877543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.03  E-value=7.9e-10  Score=69.15  Aligned_cols=57  Identities=21%  Similarity=0.331  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|...|++++.. +|+|+.+.+.||.+|++.|++.+|.+++++++..+|++|.++.
T Consensus         7 ~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    7 YDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            78999999999999 7999999999999999999999999999999999999998864

...

>PRK12370 invasion protein regulator; Provisional

Probab=99.02  E-value=2.6e-09  Score=92.04  Aligned_cols=87  Identities=9%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...|++++|.+.++ +++.||+++.+|..+         +++|...|++|.++ +|.++.+.+.++..+...|++++|
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA  425 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDA  425 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHH
Confidence            7788899999999999 999999999998854         99999999999999 799998888888888889999999


Q ss_pred             HHHHHHHHHhC-CCCHHHH
Q psy16144         92 IDVSQTIMKAH-PSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~-P~ypkir  109 (122)
                      ++.++++++.+ |++|...
T Consensus       426 ~~~~~~~l~~~~p~~~~~~  444 (553)
T PRK12370        426 IRLGDELRSQHLQDNPILL  444 (553)
T ss_pred             HHHHHHHHHhccccCHHHH
Confidence            99999999886 7788754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.00  E-value=2.7e-09  Score=77.36  Aligned_cols=82  Identities=15%  Similarity=0.089  Sum_probs=71.4

Q ss_pred             ChHHHHHHHH-HHhhCcchHHHHh--hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy16144         28 RWEPLSAGLR-KKQYISSATNIYN--LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        28 k~d~A~elL~-~l~~nps~~kA~e--~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~  100 (122)
                      |..--+++|+ +++.+|+.....-  +.    |++|...|++|+.+ +|+++.+.+.||.++.+.|++.+|++.|+++++
T Consensus         8 ~~~~~~~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359          8 KNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             ccCCHHHHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4445578999 9999998643221  22    99999999999999 799999999999999999999999999999999


Q ss_pred             hCCCCHHHHH
Q psy16144        101 AHPSYPKVHK  110 (122)
Q Consensus       101 ~~P~ypkir~  110 (122)
                      .+|++|..+.
T Consensus        87 l~p~~~~a~~   96 (144)
T PRK15359         87 LDASHPEPVY   96 (144)
T ss_pred             cCCCCcHHHH
Confidence            9999998865

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=2e-09  Score=67.17  Aligned_cols=53  Identities=23%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      |++|...|+++.+. +|+++.+.+.||.++...|++.+|+..++++++.+|++|
T Consensus        13 ~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            88999999999999 699999999999999999999999999999999999987

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.97  E-value=3.8e-09  Score=82.49  Aligned_cols=94  Identities=20%  Similarity=0.239  Sum_probs=76.7

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |..+  ++.+.|+.++|.+.++ +++.+|.++.++..+         +++|...++...+. .|+||.+...||..|+..
T Consensus       149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccc
Confidence            4444  8999999999999999 999999988877633         77766666665555 599999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++.+|++.++++++.+|++|.+....
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999987643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.91  E-value=3e-08  Score=71.21  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRII-GTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~-~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      +|...|++++|.++++ +++.+|....++..+         |++|...|+++.... .+..+...+.+|..|.+.|++.+
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  153 (234)
T TIGR02521        74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK  153 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence            4555555555555555 555555544433311         555555555554431 12334445555555555555555


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypki  108 (122)
                      |+..+.++++.+|+++.+
T Consensus       154 A~~~~~~~~~~~~~~~~~  171 (234)
T TIGR02521       154 AEKYLTRALQIDPQRPES  171 (234)
T ss_pred             HHHHHHHHHHhCcCChHH
Confidence            555555555555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.91  E-value=2.7e-08  Score=71.39  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|...|++++|.+.++ +++.+|+...++..+         +++|...|+++.+. .|.++.+.+.+|..|...|++.+|
T Consensus        40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcccHHHH
Confidence            8889999999999999 999999988887743         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy16144         92 IDVSQTIMKA  101 (122)
Q Consensus        92 I~vc~kVL~~  101 (122)
                      +..++++++.
T Consensus       119 ~~~~~~~~~~  128 (234)
T TIGR02521       119 MQQFEQAIED  128 (234)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.90  E-value=2.9e-08  Score=75.08  Aligned_cols=94  Identities=9%  Similarity=-0.087  Sum_probs=80.4

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCChH---HHH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSDLA---LHQ   76 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~---vgy   76 (122)
                      +..++.+  .+.+.|+|++|.+.++ +++.+|+++   .++..+         +++|...|+++.+. .|+++.   +.|
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~  111 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDADYAYY  111 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCchHHHHH
Confidence            3444555  7788999999999999 999999866   454422         99999999999999 688887   689


Q ss_pred             HHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         77 KLASLLLRM--------KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        77 kLA~~ylk~--------kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .+|.+|.+.        |++.+|+..++++++.+|+++...
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            999999987        899999999999999999998764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.89  E-value=9.9e-09  Score=64.43  Aligned_cols=50  Identities=18%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK-RYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k-r~~~AI~vc~kVL~~~P  103 (122)
                      |++|+.+|++|.++ +|+++.+.+.+|.+|++.| ++.+|+..++++++.+|
T Consensus        19 ~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   19 YEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            99999999999999 7999999999999999999 89999999999999998

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.88  E-value=2.1e-08  Score=88.37  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             HhcCCCChHH----HHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEP----LSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~----A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      +|.+.|++++    |.+.++ +++.+|++..++..+         +++|...|++|+++ +|+++.+.+.||..|.+.|+
T Consensus       255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~  333 (656)
T PRK15174        255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQ  333 (656)
T ss_pred             HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCC
Confidence            5556666664    566666 666666666655533         66666666666666 46666666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypki  108 (122)
                      +++|++.++++++.+|+++..
T Consensus       334 ~~eA~~~l~~al~~~P~~~~~  354 (656)
T PRK15174        334 YTAASDEFVQLAREKGVTSKW  354 (656)
T ss_pred             HHHHHHHHHHHHHhCccchHH
Confidence            666666666666666665543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.87  E-value=2.6e-08  Score=75.68  Aligned_cols=85  Identities=13%  Similarity=-0.021  Sum_probs=77.3

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      -++||+++|+.+|+ ..-++|.+++.|.-+         |+.|+..|..|..+ +++||..-|-.|.+|+..|+...|..
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCCccchHHHHHHHhCCHHHHHH
Confidence            35699999999999 888999999988744         99999999999999 59999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHH
Q psy16144         94 VSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        94 vc~kVL~~~P~ypkir~  110 (122)
                      +++.|.. +|.++.++.
T Consensus       127 ~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        127 CFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHHh-CcchHHHHH
Confidence            9999996 888887764

>KOG4626|consensus

Probab=98.87  E-value=1.1e-08  Score=91.32  Aligned_cols=89  Identities=19%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|-|+|++++|....+ +++..|....|+.-|         -+.|+.+|++|... +|++..+.-+||..|-.+|...+|
T Consensus       397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~-nPt~AeAhsNLasi~kDsGni~~A  475 (966)
T KOG4626|consen  397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI-NPTFAEAHSNLASIYKDSGNIPEA  475 (966)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-CcHHHHHHhhHHHHhhccCCcHHH
Confidence            8888899999999888 899999888888855         77899999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      |+-|+.+|++.||+|..--.
T Consensus       476 I~sY~~aLklkPDfpdA~cN  495 (966)
T KOG4626|consen  476 IQSYRTALKLKPDFPDAYCN  495 (966)
T ss_pred             HHHHHHHHccCCCCchhhhH
Confidence            99999999999999987543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.87  E-value=1.8e-08  Score=93.09  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      ..|++++|...++ +++.+|+ ..+|.-+         +++|...|++|+++ +|+++.+.+.||..+...|++++|+++
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3499999999999 9999997 7777633         99999999999999 799999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHH
Q psy16144         95 SQTIMKAHPSYPKVHK  110 (122)
Q Consensus        95 c~kVL~~~P~ypkir~  110 (122)
                      ++++++.+|++|.++.
T Consensus       666 l~~AL~l~P~~~~a~~  681 (987)
T PRK09782        666 LERAHKGLPDDPALIR  681 (987)
T ss_pred             HHHHHHhCCCCHHHHH
Confidence            9999999999998864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.87  E-value=2.9e-08  Score=87.56  Aligned_cols=93  Identities=11%  Similarity=-0.056  Sum_probs=80.8

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++++  .....|++++|.+.++ +++.+|+++.+|..+         +++|...|++|.++ +|+++.+...||..|...
T Consensus        79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~  157 (656)
T PRK15174         79 LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLM  157 (656)
T ss_pred             HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC
Confidence            4555  6677899999999999 999999998888744         89999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++.+|+..+++++..+|+.+.....
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~  183 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIAT  183 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999988877644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.83  E-value=4.8e-08  Score=82.74  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC--------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF--------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l--------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI   92 (122)
                      +|...|++++|.+.++ +++.+|+++.++..+        -.+|...|++++++ .|+++.+...+|..|...|++.+|+
T Consensus       779 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~  857 (899)
T TIGR02917       779 LYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRAL  857 (899)
T ss_pred             HHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            7888899999999999 999999888877744        35689999999998 6899999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHH
Q psy16144         93 DVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        93 ~vc~kVL~~~P~ypkir~~il  113 (122)
                      ..++++++.+|+.|.++..+.
T Consensus       858 ~~~~~a~~~~~~~~~~~~~l~  878 (899)
T TIGR02917       858 PLLRKAVNIAPEAAAIRYHLA  878 (899)
T ss_pred             HHHHHHHhhCCCChHHHHHHH
Confidence            999999999999888876543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.81  E-value=4.2e-08  Score=90.95  Aligned_cols=92  Identities=17%  Similarity=0.128  Sum_probs=80.3

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHH------------Hh-------hC----HHHHHHHHHHHHHhhCCCC
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNI------------YN-------LF----PDDAVVQYTQACRIIGTSD   71 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA------------~e-------~l----y~dAa~~ye~Aw~l~~~~~   71 (122)
                      ++.|  +|.+.|++++|.++|+ +++.+|+....            |.       ++    +++|...|++|.+. +|++
T Consensus       306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~  384 (1157)
T PRK11447        306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTD  384 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence            3444  8899999999999999 99999986531            11       11    99999999999999 7999


Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +.+.+.||.+|...|++.+|++.|+++++.+|+++.+..
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999999999999999999999988754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.80  E-value=4.9e-08  Score=67.73  Aligned_cols=78  Identities=19%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             HHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         33 SAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        33 ~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      .++|+ ++..+|+...+...+         |++|...|+.+... +|+++.+.+.+|..|.+.|++.+|+.+++++++.+
T Consensus         3 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         3 GATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             chhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            36788 999999877665522         99999999999999 79999999999999999999999999999999999


Q ss_pred             CCCHHHHHH
Q psy16144        103 PSYPKVHKQ  111 (122)
Q Consensus       103 P~ypkir~~  111 (122)
                      |++|..+..
T Consensus        82 p~~~~~~~~   90 (135)
T TIGR02552        82 PDDPRPYFH   90 (135)
T ss_pred             CCChHHHHH
Confidence            999988743

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.80  E-value=5.6e-08  Score=86.84  Aligned_cols=93  Identities=12%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++..+|++++|+++|+ ++...|+++.++..+         +++|...|++|+++ +|+++.+.+.+|.++++.|++.+|
T Consensus       368 ~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~~~~~~A  446 (765)
T PRK10049        368 VAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDLQEWRQM  446 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhCCHHHH
Confidence            8889999999999999 999999999888844         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAM  117 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~  117 (122)
                      +.+.+++++.+|++|-+..  |++++
T Consensus       447 ~~~~~~ll~~~Pd~~~~~~--~~~~~  470 (765)
T PRK10049        447 DVLTDDVVAREPQDPGVQR--LARAR  470 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHH--HHHHH
Confidence            9999999999999998853  44443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.77  E-value=1.4e-07  Score=79.92  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.++++ +++.+|..+.+|..+         +++|...|+++.+. +|+++.+.+.+|..|.+.|++.+|
T Consensus       576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A  654 (899)
T TIGR02917       576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKA  654 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHH
Confidence            6667777777777777 777777777766643         77888888888777 577777788888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      +.+++++++.+|+++..+.
T Consensus       655 ~~~~~~~~~~~~~~~~~~~  673 (899)
T TIGR02917       655 ITSLKRALELKPDNTEAQI  673 (899)
T ss_pred             HHHHHHHHhcCCCCHHHHH
Confidence            8888888888887766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.76  E-value=1.5e-07  Score=75.34  Aligned_cols=87  Identities=16%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~   85 (122)
                      +....|+|++|.+.|+ .++..|++.   .+++.+         |++|+..|+.+.+. .|+   .+.+.+++|..|...
T Consensus       152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDK  230 (263)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHc
Confidence            5567799999999999 999999973   566533         99999999999976 455   688899999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |++.+|+.+|++|++.+|+.+-.+
T Consensus       231 g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        231 GDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999887553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.75  E-value=8.2e-08  Score=89.03  Aligned_cols=87  Identities=13%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhh-------------------------------------------------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNL-------------------------------------------------   51 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~-------------------------------------------------   51 (122)
                      +|.+.|++++|++.++ +++.+|++..++..                                                 
T Consensus       394 ~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~  473 (1157)
T PRK11447        394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN  473 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            8889999999999999 99999997766420                                                 


Q ss_pred             C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         52 F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        52 l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .  +++|+..|++|.+. +|+++.+.+.||..|.+.|++.+|+..++++++.+|++|..+
T Consensus       474 ~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~  532 (1157)
T PRK11447        474 QGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV  532 (1157)
T ss_pred             CCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            1  78899999999999 799999999999999999999999999999999999998764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.72  E-value=6.2e-08  Score=77.53  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      =|+++|.+..|.+-|+ +|+++||...+|.-+         .+-|-..|++|+.+ +|++..|..+-|..+...|+|++|
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHHhCCChHHH
Confidence            7899999999999999 999999999999833         88899999999999 799999977777777777777777


Q ss_pred             HHHHHHHHHhCCCCHH
Q psy16144         92 IDVSQTIMKAHPSYPK  107 (122)
Q Consensus        92 I~vc~kVL~~~P~ypk  107 (122)
                      -.-+++++ .+|+||.
T Consensus       123 ~q~F~~Al-~~P~Y~~  137 (250)
T COG3063         123 MQQFERAL-ADPAYGE  137 (250)
T ss_pred             HHHHHHHH-hCCCCCC
Confidence            77777666 6666653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.72  E-value=2.4e-07  Score=82.77  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      +..+  ++.+.|++++|.++++ +++.+|.++.++..+         +++|...++++.+. .|+++. .+.||..|...
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~  129 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRA  129 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHC
Confidence            4445  8899999999999999 999999998887633         99999999999999 799999 99999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++.+|+..++++++.+|+++.+...
T Consensus       130 g~~~~Al~~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049        130 GRHWDELRAMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999988653

>KOG1125|consensus

Probab=98.71  E-value=2.4e-08  Score=87.51  Aligned_cols=82  Identities=15%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ||--.|+||.|++.|+ +|..+|++..-|..+         ..||+..|.+|+++ .|.+..+.|+||-++|-.|-|.||
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHH
Confidence            7777899999999999 999999999999988         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q psy16144         92 IDVSQTIMKAHPS  104 (122)
Q Consensus        92 I~vc~kVL~~~P~  104 (122)
                      +..+-.||..++.
T Consensus       518 ~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  518 VKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999999885

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.69  E-value=1.3e-07  Score=59.76  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|...++.+.++ +|+++...+.+|..|.+.|++.+|+..++++++..|+.|.+..
T Consensus        11 ~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen   11 YEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            78888888889998 7999999999999999999999999999999999999988753

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.68  E-value=2.7e-07  Score=73.85  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH-HHHh-------hC--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT-NIYN-------LF--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~-kA~e-------~l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      +|.+.|++++|.++++ +++.+|++. .++.       ..  +++|...++++.+. +|+++.+ ..+|..|.+.|++.+
T Consensus       223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~-~~la~~~~~~g~~~~  300 (389)
T PRK11788        223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGADLL-LALAQLLEEQEGPEA  300 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHH-HHHHHHHHHhCCHHH
Confidence            4555555555555555 555555431 1111       11  55555555555555 3544333 555666666666666


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir  109 (122)
                      |+.+++++++.+|+.+.++
T Consensus       301 A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        301 AQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHHHhCcCHHHHH
Confidence            6666666666666555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=4.4e-07  Score=68.61  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=73.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH---HHhhC-----------------HHHHHHHHHHHHHhhCCCChHHH-----
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN---IYNLF-----------------PDDAVVQYTQACRIIGTSDLALH-----   75 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k---A~e~l-----------------y~dAa~~ye~Aw~l~~~~~~~vg-----   75 (122)
                      +|.+.|++++|.+.++ +++.+|+.+.   ++..+                 +++|...|+++++. +|+++.+.     
T Consensus        79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~  157 (235)
T TIGR03302        79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKR  157 (235)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHH
Confidence            8899999999999999 9999998776   44321                 67899999999999 79987553     


Q ss_pred             ------------HHHHHHHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         76 ------------QKLASLLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        76 ------------ykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                                  +.+|..|++.|++.+|++.++++++.+|+.|
T Consensus       158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence                        5789999999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.66  E-value=3e-07  Score=82.43  Aligned_cols=89  Identities=17%  Similarity=-0.105  Sum_probs=81.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +..+.+++|+|.+.++ ++..+|+++.++..+         |++|...|+++.. .+|+++.+...+|..+++.|+.++|
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            8889999999999999 999999999988744         9999999999999 4899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      .+.|+++++..-+-.|--.+
T Consensus       208 ~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        208 RDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHhhCcchHHHHH
Confidence            99999999998876654333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.65  E-value=7e-08  Score=63.30  Aligned_cols=72  Identities=17%  Similarity=0.183  Sum_probs=58.1

Q ss_pred             CCCChHHHHHHHH-HHhhCcc--hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISS--ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps--~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI   92 (122)
                      ++|.|+.|+.+++ +++.+|+  ....+..+         |++|...+++ .+. +++++.+.+-+|.+|.+.|+|++||
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            3689999999999 9999995  34444422         9999999999 666 5888999999999999999999999


Q ss_pred             HHHHHH
Q psy16144         93 DVSQTI   98 (122)
Q Consensus        93 ~vc~kV   98 (122)
                      .+++++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            988764

>KOG4626|consensus

Probab=98.63  E-value=1.1e-07  Score=85.20  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|-.+|++++|..+++ +++.+|.|+.|+.-+         ++||+.+|+.|+.+ +|++..+.-++|..|-.+|+...|
T Consensus       363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-~P~fAda~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-KPTFADALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-CchHHHHHHhcchHHHHhhhHHHH
Confidence            7777788888888877 888888877777733         77788888888887 588888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      |.+|.++...+|.+......
T Consensus       442 ~q~y~rAI~~nPt~AeAhsN  461 (966)
T KOG4626|consen  442 IQCYTRAIQINPTFAEAHSN  461 (966)
T ss_pred             HHHHHHHHhcCcHHHHHHhh
Confidence            88888887788877776543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.63  E-value=5.1e-07  Score=66.42  Aligned_cols=83  Identities=11%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc-
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR-   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr-   87 (122)
                      +|.+.|++++|.++++ +++.+|+..   .++..+         |++|...|++|.+. .|+++...+.+|..|...|+ 
T Consensus        44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCh
Confidence            7889999999999999 999887643   344322         99999999999999 79999999999999999988 


Q ss_pred             -------------HHHHHHHHHHHHHhCCCC
Q psy16144         88 -------------YAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        88 -------------~~~AI~vc~kVL~~~P~y  105 (122)
                                   +.+|++++++++..+|++
T Consensus       123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                         788999999999999976

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.61  E-value=3.3e-07  Score=79.16  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -+.+.|++|.|+..|+ .++..|+++-.+++.         +++|.+.+++|..+ .|+.+...+.+|..|++.|++.+|
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHHH
Confidence            5667899999999999 999999999999955         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      |...+..+..+|++|..+. -|-.|+..
T Consensus       394 i~~L~~~~~~~p~dp~~w~-~LAqay~~  420 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWD-LLAQAYAE  420 (484)
T ss_pred             HHHHHHHhhcCCCCchHHH-HHHHHHHH
Confidence            9999999999999999984 66655543

>KOG1155|consensus

Probab=98.61  E-value=2.2e-07  Score=80.50  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      -.+..+.|+.+|+ +|++||+...||-+|         -..|+.+|+.|.+. +|.|-.+.|.||..|.-++-+.=|+=-
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyY  420 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYY  420 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHH
Confidence            3467899999999 999999999988766         67789999999999 799999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcc
Q psy16144         95 SQTIMKAHPSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        95 c~kVL~~~P~ypkir~~il~ka~~~l  120 (122)
                      +++++..-|+.++++. .|-.|+..|
T Consensus       421 fqkA~~~kPnDsRlw~-aLG~CY~kl  445 (559)
T KOG1155|consen  421 FQKALELKPNDSRLWV-ALGECYEKL  445 (559)
T ss_pred             HHHHHhcCCCchHHHH-HHHHHHHHh
Confidence            9999999999999885 566665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.60  E-value=1.2e-06  Score=64.05  Aligned_cols=88  Identities=9%  Similarity=-0.060  Sum_probs=72.6

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcch---HHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSA---TNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~---~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      .|+.+  ++...|++++|...++ +++.+|+.   +.+|..+         +++|...|++|..+ .|.++.....+|..
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHH
Confidence            34444  7888999999999999 99887763   3355422         99999999999999 79999999999999


Q ss_pred             HH-------hcccHH-------HHHHHHHHHHHhCCCC
Q psy16144         82 LL-------RMKRYA-------EAIDVSQTIMKAHPSY  105 (122)
Q Consensus        82 yl-------k~kr~~-------~AI~vc~kVL~~~P~y  105 (122)
                      |.       +.|++.       +|+.++++++..+|++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99       777755       7888888999999954

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.60  E-value=8.2e-07  Score=71.08  Aligned_cols=85  Identities=12%  Similarity=0.008  Sum_probs=58.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD-LALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~-~~vgykLA~~ylk~kr~~~   90 (122)
                      ++.+.|++++|.++++ +++.+|++..++..+         +++|...|+++++. +|++ +.+...|+..|.+.|++++
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHH
Confidence            5666777777777777 777777766665533         77777777777776 3544 3455667777777777777


Q ss_pred             HHHHHHHHHHhCCCCHH
Q psy16144         91 AIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypk  107 (122)
                      |+..++++++.+|+.+.
T Consensus       268 A~~~l~~~~~~~p~~~~  284 (389)
T PRK11788        268 GLEFLRRALEEYPGADL  284 (389)
T ss_pred             HHHHHHHHHHhCCCchH
Confidence            77777777777776544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.57  E-value=7.1e-07  Score=71.40  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             CCChHHHHHHHH-HHhhCc---c-hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         26 PWRWEPLSAGLR-KKQYIS---S-ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~np---s-~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++..+.+...+. ++..+|   + .+.+|..+         +++|...|++|.++ +|+++.+.+.||..|...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            467788999998 886444   3 24455522         89999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      ++.++++++.+|+++.++..
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999887543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.53  E-value=1.3e-07  Score=73.78  Aligned_cols=78  Identities=13%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +++..|+++++.++++ ..+.+|+++..|..+         +++|...|+++++. +|+||.+...+|.++...|++++|
T Consensus       189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT--------
T ss_pred             HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            8899999999999999 888887777666633         99999999999998 899999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy16144         92 IDVSQTIMK  100 (122)
Q Consensus        92 I~vc~kVL~  100 (122)
                      .++.+++++
T Consensus       268 ~~~~~~~~~  276 (280)
T PF13429_consen  268 LRLRRQALR  276 (280)
T ss_dssp             ---------
T ss_pred             ccccccccc
Confidence            999999985

>KOG1126|consensus

Probab=98.53  E-value=1.3e-07  Score=83.74  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.-++++|.|++.|+ ++++||....||=++         |+.|.++|++|+.. +|++=.+.|-||-+|+|.++++.|
T Consensus       430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYGlG~vy~Kqek~e~A  508 (638)
T KOG1126|consen  430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYGLGTVYLKQEKLEFA  508 (638)
T ss_pred             hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHhhhhheeccchhhHH
Confidence            4555789999999999 999999988888655         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      .--+++++.+||.+--|.
T Consensus       509 e~~fqkA~~INP~nsvi~  526 (638)
T KOG1126|consen  509 EFHFQKAVEINPSNSVIL  526 (638)
T ss_pred             HHHHHhhhcCCccchhHH
Confidence            999999999999876654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.2e-06  Score=71.63  Aligned_cols=90  Identities=19%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC------------HHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF------------PDDAVVQYTQACRIIGTSDLALHQKLA   79 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l------------y~dAa~~ye~Aw~l~~~~~~~vgykLA   79 (122)
                      +..|.+|  +|.+.|+++.|...++ +.++.|+++..+--+            -.+|-..+.+|+++ +|+|+++-+-||
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-D~~~iral~lLA  234 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-DPANIRALSLLA  234 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-CCccHHHHHHHH
Confidence            4569999  9999999999999999 999999999988732            77899999999999 899999999999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      +++...|+|.+|+...+..|+..|..
T Consensus       235 ~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         235 FAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999944

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.48  E-value=2.9e-07  Score=57.26  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL   72 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~   72 (122)
                      .+.++|+|++|.+.++ +++.+|+++.+|..+         |++|+..|+++.+. +|+||
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-~P~~p   65 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-DPDNP   65 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCC
Confidence            7889999999999999 999999999999955         99999999999999 69886

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.45  E-value=6.4e-07  Score=52.90  Aligned_cols=40  Identities=20%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |.+.+.||..|...|++++|+++++++++.+|++|.++..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            5788999999999999999999999999999999999853

>KOG1173|consensus

Probab=98.43  E-value=1.8e-06  Score=76.08  Aligned_cols=93  Identities=13%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc----hHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS----ATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps----~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ++-+.+.|.+|..+|+ ++..-|+    .+ -|+-+             |.+|+.+|++|+.+ .|.|+++.-.+||.|.
T Consensus       423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~  500 (611)
T KOG1173|consen  423 VAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYH  500 (611)
T ss_pred             eeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHH
Confidence            4445567777777777 6633333    22 34411             99999999999999 5999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAM  117 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~  117 (122)
                      ..|++..||+-+||+|.+.|++--+. ++|-+|.
T Consensus       501 llgnld~Aid~fhKaL~l~p~n~~~~-~lL~~ai  533 (611)
T KOG1173|consen  501 LLGNLDKAIDHFHKALALKPDNIFIS-ELLKLAI  533 (611)
T ss_pred             HhcChHHHHHHHHHHHhcCCccHHHH-HHHHHHH
Confidence            99999999999999999999987665 4666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.40  E-value=4.1e-06  Score=67.59  Aligned_cols=89  Identities=16%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ..++.|.|..|+..|+ +...+|.++++|..+         +++|-.-|.+|.++ .|++|.+--+||..|+..|++.+|
T Consensus       109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A  187 (257)
T COG5010         109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDA  187 (257)
T ss_pred             HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHH
Confidence            7889999999999999 999999999999855         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      .......-..-|..++|+.+
T Consensus       188 ~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         188 ETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             HHHHHHHHhCCCCchHHHHH
Confidence            99988888666678888764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=2e-06  Score=78.46  Aligned_cols=86  Identities=13%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHH-Hh----hC----HHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNI-YN----LF----PDDAVVQYTQACRIIGTSDLALHQKL--ASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA-~e----~l----y~dAa~~ye~Aw~l~~~~~~~vgykL--A~~ylk~kr~~   89 (122)
                      +..++|+++.|.+.|+ +++.+|..+.+ +.    +.    +++|..+++++.   .|.+....-.+  |..|...|+|.
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~---~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ---SSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHH
Confidence            8889999999999999 99999998533 12    11    899999999998   34444444444  77999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +|+++|+++++.+|++|.+..
T Consensus       120 ~Aiely~kaL~~dP~n~~~l~  140 (822)
T PRK14574        120 QALALWQSSLKKDPTNPDLIS  140 (822)
T ss_pred             HHHHHHHHHHhhCCCCHHHHH
Confidence            999999999999999998875

>KOG1125|consensus

Probab=98.34  E-value=2.6e-06  Score=74.95  Aligned_cols=58  Identities=26%  Similarity=0.351  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |+.|+.||+.|+.. +|+|-..+-|||..+--..|.+|||.-|+++|.+-|.|.|+|-.
T Consensus       446 fdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  446 FDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             HHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            99999999999999 89999999999999999999999999999999999999999864

>PLN02789 farnesyltranstransferase

Probab=98.31  E-value=1.3e-05  Score=65.81  Aligned_cols=88  Identities=3%  Similarity=-0.035  Sum_probs=67.0

Q ss_pred             HhcCCC-ChHHHHHHHH-HHhhCcchHHHHhhC-----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH
Q psy16144         22 LYLLPW-RWEPLSAGLR-KKQYISSATNIYNLF-----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY   88 (122)
Q Consensus        22 Lyi~~g-k~d~A~elL~-~l~~nps~~kA~e~l-----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~   88 (122)
                      ++...| ++++|.+.+. +++.||.+..+|...           ++++...++++++. +|+|-.+....++.+...|++
T Consensus        80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789         80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhH
Confidence            334445 4677888887 888888877777622           35677778888888 788888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q psy16144         89 AEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .+|++.|.++++.+|.+..++.
T Consensus       159 ~eeL~~~~~~I~~d~~N~sAW~  180 (320)
T PLN02789        159 EDELEYCHQLLEEDVRNNSAWN  180 (320)
T ss_pred             HHHHHHHHHHHHHCCCchhHHH
Confidence            8888888888888888877653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.30  E-value=5.2e-06  Score=60.59  Aligned_cols=81  Identities=11%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHhhC-----------HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhcccHHHHHH
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYNLF-----------PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e~l-----------y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      |..+.+.|. .++.+++...+..++           |++|...|++|..+. ++   .+.+.++||..|.+.|++.+|+.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            555666666 656666655544322           999999999999983 54   34589999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHH
Q psy16144         94 VSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        94 vc~kVL~~~P~ypkir~  110 (122)
                      .|++++..+|+++....
T Consensus        94 ~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         94 YYFQALERNPFLPQALN  110 (168)
T ss_pred             HHHHHHHhCcCcHHHHH
Confidence            99999999999987654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.29  E-value=1.1e-05  Score=64.01  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      +++|...+++++++ +|+++.+...||..|...|++++|++.++++++..|.
T Consensus       130 ~~~A~~~~~~al~~-~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         130 YDRAEEAARRALEL-NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            55555555555555 4555555555555555555555555555555555553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.28  E-value=3.6e-06  Score=63.53  Aligned_cols=56  Identities=13%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      +++|...|+-+..+ +|.|+...|.||-++...|+|.+||+.|.+++..+||+|+.-
T Consensus        51 l~~A~~~f~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         51 FAGAARLFQLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            99999999999999 899999999999999999999999999999999999999874

>PLN02789 farnesyltranstransferase

Probab=98.26  E-value=1.6e-05  Score=65.31  Aligned_cols=88  Identities=5%  Similarity=0.004  Sum_probs=80.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH--
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY--   88 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~--   88 (122)
                      ++...++++.|.++.. +++.||++..+|.+.          +++|...++++.+. +|++..+.+..+.++.+.|+.  
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCchhh
Confidence            7778899999999999 999999999999844          78999999999999 899999999999999999985  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q psy16144         89 AEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .++++.|.++++.+|.+-.++.
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHH
Confidence            6889999999999999877754

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.26  E-value=3e-06  Score=46.31  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      |.+.+.||.+|.+.|++.+|++.|+++++.+|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.25  E-value=6.5e-06  Score=65.27  Aligned_cols=82  Identities=10%  Similarity=0.014  Sum_probs=70.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHH----HHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLAL----HQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~v----gykLA~~ylk~kr   87 (122)
                      ++..+|++++|.+.++ +++.+|+++.++..+         +++|...++++.+. .|.++..    .+.+|..|+..|+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~~~~~~~~~~~~la~~~~~~G~  201 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-WDCSSMLRGHNWWHLALFYLERGD  201 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCCcchhHHHHHHHHHHHHHCCC
Confidence            7889999999999999 999999988776543         99999999999998 4544433    4479999999999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q psy16144         88 YAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~  104 (122)
                      +++|++++++++...|.
T Consensus       202 ~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         202 YEAALAIYDTHIAPSAE  218 (355)
T ss_pred             HHHHHHHHHHHhccccC
Confidence            99999999999877773

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1126|consensus

Probab=98.24  E-value=1.7e-06  Score=76.82  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             HHHHHHH---HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         15 IAEWHFL---LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        15 ~~~~~~L---Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      .+-.|.|   =++..-.||.|...+| +|..+|....||.-+         ++.|.-+|++|.+. ||.|..+-.-+|..
T Consensus       454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~  532 (638)
T KOG1126|consen  454 FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-NPSNSVILCHIGRI  532 (638)
T ss_pred             cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-CccchhHHhhhhHH
Confidence            3445555   4556667788888888 888888888888733         77788888888887 78888888888888


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      |.+.|+.++|++++++++-.+|.+|-
T Consensus       533 ~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            88888888888888888877777653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.24  E-value=7e-06  Score=75.73  Aligned_cols=93  Identities=13%  Similarity=0.095  Sum_probs=77.7

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh------------
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL------------   72 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~------------   72 (122)
                      .|..|  +|...|++|+|.++++ .++++|+...+|.++         +.+|+..  ++.... +.+.            
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHHHHHHH
Confidence            44445  8889999999999999 999999999998855         6666555  555553 4444            


Q ss_pred             -------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         73 -------ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        73 -------~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                             .+.+.||.+|-+.|++.+|+++++++|+.+|++|-+-..+
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~  156 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL  156 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence                   8999999999999999999999999999999999886554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.23  E-value=2.5e-06  Score=53.29  Aligned_cols=52  Identities=13%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCC
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~   69 (122)
                      .|..+  .+.+.|+|++|++.++ +++++|+++.+|..+          |++|...|++|+++ +|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l-~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL-DP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH-ST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc-Cc
Confidence            45556  8899999999999999 999999999999844          89999999999998 55

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.22  E-value=6.9e-06  Score=67.79  Aligned_cols=58  Identities=22%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|+..|++|+++ +|+++.+.+.+|.+|++.|++.+|+..++++++.+|+++.+...
T Consensus        18 ~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088         18 FALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988653

>KOG1155|consensus

Probab=98.20  E-value=1.2e-05  Score=69.97  Aligned_cols=87  Identities=14%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      -|-++  =|+..+....|.+-.| +++.||-+.+||.-+         +-=|.-+|++|.++ +|+|+.+..-||.+|+|
T Consensus       366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEK  444 (559)
T ss_pred             HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHH
Confidence            34444  7888899999999999 999999999999844         67789999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCC
Q psy16144         85 MKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~  104 (122)
                      .++.+|||-+|.+++...-.
T Consensus       445 l~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  445 LNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             hccHHHHHHHHHHHHhcccc
Confidence            99999999999999977665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.18  E-value=3.8e-06  Score=46.34  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      +.+.+.+|..|...|++.+|++.|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.16  E-value=5.7e-06  Score=71.29  Aligned_cols=66  Identities=12%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCHHH
Q psy16144         42 ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLAL---HQKLASLLLRMKRYAEAIDVSQTIMKA-HPSYPKV  108 (122)
Q Consensus        42 nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~v---gykLA~~ylk~kr~~~AI~vc~kVL~~-~P~ypki  108 (122)
                      +|+.+.+|.-+         |++|+.+|++|+++ +|+++.+   .|+||.+|.+.|++++|++.++++++. +|.|..+
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i  149 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTI  149 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555522         99999999999999 7999855   999999999999999999999999997 5544333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.16  E-value=1.8e-05  Score=47.72  Aligned_cols=57  Identities=19%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +++|...++++.+. .|+++.+.+.+|..|...|++.+|++.++++++.+|..+.+..
T Consensus        16 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   72 (100)
T cd00189          16 YDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence            89999999999999 6999999999999999999999999999999999999886543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.15  E-value=2e-05  Score=72.05  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=47.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|+|+.|.++++ +++.+|+++.++..+         +++|...++++... +|++... --+++.+...+++.+|
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~-l~layL~~~~~~~~~A  188 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNY-MTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHH-HHHHHHHHhcchHHHH
Confidence            4555566666666666 666666655555422         55555555555555 3444443 3334444445555556


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      +.+++++++.+|+++++.
T Consensus       189 L~~~ekll~~~P~n~e~~  206 (822)
T PRK14574        189 LQASSEAVRLAPTSEEVL  206 (822)
T ss_pred             HHHHHHHHHhCCCCHHHH
Confidence            666666666666665553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.14  E-value=7e-06  Score=53.70  Aligned_cols=56  Identities=27%  Similarity=0.430  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTS--DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~--~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|+..|+++++.. |+  ++.+.+.||.+|.+.|+|.+|++++++ ++.+|.++.++-
T Consensus         5 y~~Ai~~~~k~~~~~-~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    5 YENAIKYYEKLLELD-PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             HHHHHHHHHHHHHHH-CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            789999999999996 63  678899999999999999999999999 889998888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.14  E-value=9.9e-06  Score=50.99  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA   79 (122)
                      +|+++++|++|.+.++ +++.+|+++.+|...         |.+|...++++++. +|+++.+..-.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-~p~~~~~~~~~a   70 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-SPDDPDARALRA   70 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-CCCcHHHHHHHH
Confidence            7899999999999999 999999999999844         99999999999999 699888765443

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=3e-05  Score=64.39  Aligned_cols=86  Identities=8%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC-------HHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF-------PDDAVVQYTQACRIIGTSDL--ALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l-------y~dAa~~ye~Aw~l~~~~~~--~vgykLA~~ylk~kr   87 (122)
                      ++++.|++++|.+.++ .++.+|++..    .+...       .+++....+++.+. +|+||  .+...||..+.+.|+
T Consensus       272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~  350 (409)
T TIGR00540       272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGE  350 (409)
T ss_pred             HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHccc
Confidence            8999999999999999 9999999874    33311       77889999999988 79999  889999999999999


Q ss_pred             HHHHHHHHH--HHHHhCCCCHHH
Q psy16144         88 YAEAIDVSQ--TIMKAHPSYPKV  108 (122)
Q Consensus        88 ~~~AI~vc~--kVL~~~P~ypki  108 (122)
                      +.+|.+.++  +.++.+|+....
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHHH
Confidence            999999999  688899977553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1840|consensus

Probab=98.13  E-value=2.8e-05  Score=67.90  Aligned_cols=94  Identities=23%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhh--------Ccc---hHH--HHhhC----HHHHHHHHHHHHHhhC----CCChHHH---H
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY--------ISS---ATN--IYNLF----PDDAVVQYTQACRIIG----TSDLALH---Q   76 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~--------nps---~~k--A~e~l----y~dAa~~ye~Aw~l~~----~~~~~vg---y   76 (122)
                      .|..+|+||.|+.+++ +++.        -|-   +.+  |..|+    |++|+..|+.|+....    +++|.++   .
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~  287 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN  287 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            8999999999999999 9987        121   111  11133    9999999999987654    7777765   6


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKAH-----PSYPKVHKQIFEK  115 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~~-----P~ypkir~~il~k  115 (122)
                      +||..|.+.|||.+|...|..++++.     +++|++.....+-
T Consensus       288 nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  288 NLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence            89999999999999999999998764     4567776655543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.13  E-value=2.3e-05  Score=52.15  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      |++|...|+++... +|++   +.+.+.+|..|.+.|++.+|+..+++++..+|++|.
T Consensus        18 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (119)
T TIGR02795        18 YADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK   74 (119)
T ss_pred             HHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence            99999999999998 5766   578999999999999999999999999999998753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553|consensus

Probab=98.12  E-value=7.3e-06  Score=67.48  Aligned_cols=58  Identities=19%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |.+|+..|.+|+++ +|+|+...++=|.+|.+.|.|++||.=|+.++.++|.|-|..-.
T Consensus        97 Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R  154 (304)
T KOG0553|consen   97 YQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR  154 (304)
T ss_pred             HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999998653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.09  E-value=3.1e-05  Score=56.93  Aligned_cols=57  Identities=11%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|..+|++|++. .|+.   +.+.+.||..|.+.|++.+|+..++++++.+|+++....
T Consensus        51 ~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         51 YAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            99999999999998 3543   478999999999999999999999999999999987653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.07  E-value=7e-05  Score=62.19  Aligned_cols=88  Identities=8%  Similarity=0.010  Sum_probs=74.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh------hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN------LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e------~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      ...+.|+++.|.++|. +.+.+|+..-+..      ++    |++|...++++.+. +|++|.+..-++..|++.|++.+
T Consensus       127 aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        127 AAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-APRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhHHH
Confidence            4478899999999999 9999988754432      22    99999999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++++.+..+..+..|....
T Consensus       206 a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHH
Confidence            99999999988887666544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.05  E-value=5.5e-05  Score=57.51  Aligned_cols=87  Identities=10%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh---hC---------HHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN---LF---------PDDAVVQYTQACRIIGTSDLA---LHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e---~l---------y~dAa~~ye~Aw~l~~~~~~~---vgykLA~~ylk~   85 (122)
                      -+.+.|+|++|.+.|+ ++...|.+..+=.   .+         |.+|+..|++-.+. .|+++.   +.|.+|.++.+.
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-YPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhhHHHHHHHHHHHh
Confidence            6778899999999999 9999998554433   11         99999999999998 688775   788999998776


Q ss_pred             ccHH-----------HHHHHHHHHHHhCCCCHHHH
Q psy16144         86 KRYA-----------EAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 kr~~-----------~AI~vc~kVL~~~P~ypkir  109 (122)
                      .+-.           +|+..++.+++.+|+.+.+.
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~  127 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE  127 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred             CccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence            5544           99999999999999987664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.03  E-value=4e-05  Score=61.58  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=84.1

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIG-TSDLALHQKLASLL   82 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~-~~~~~vgykLA~~y   82 (122)
                      --|..+  +|-+.|..|.|.+.++ +++.+|.+...++-.         |++|-..|++|..... +..+...-++|.+-
T Consensus        70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063          70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence            346666  8999999999999999 999999999887722         9999999999998622 23456678999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMV  118 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~  118 (122)
                      +|+|++..|.+.+++.|+.+|++|-..   +++|+.
T Consensus       150 l~~gq~~~A~~~l~raL~~dp~~~~~~---l~~a~~  182 (250)
T COG3063         150 LKAGQFDQAEEYLKRALELDPQFPPAL---LELARL  182 (250)
T ss_pred             hhcCCchhHHHHHHHHHHhCcCCChHH---HHHHHH
Confidence            999999999999999999999999874   444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.03  E-value=0.00012  Score=60.89  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=73.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHH--hhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIY--NLF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~--e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      .+++.|+.++|.+.++ .++.+|+..-+.  -.+    +++|....++..+. +|+||...+-+|..+++.|++.+|.+.
T Consensus       272 ~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        272 HLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8889999999999999 999766543222  222    88898888887777 899999999999999999999999999


Q ss_pred             HHHHHHhCCCCHH
Q psy16144         95 SQTIMKAHPSYPK  107 (122)
Q Consensus        95 c~kVL~~~P~ypk  107 (122)
                      ++++++.+|+++.
T Consensus       351 le~al~~~P~~~~  363 (398)
T PRK10747        351 FRAALKQRPDAYD  363 (398)
T ss_pred             HHHHHhcCCCHHH
Confidence            9999999998876

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.02  E-value=5.7e-06  Score=46.98  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         59 QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        59 ~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      +|++|+++ +|+|+.+.++||..|...|++++|+.
T Consensus         1 ~y~kAie~-~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL-NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH-CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            48999999 89999999999999999999999973

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.02  E-value=3.9e-05  Score=66.78  Aligned_cols=53  Identities=15%  Similarity=0.047  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +++|...|++|.++ +| +..+.+-||..|...|++.+|++.|++++..+|.+|.
T Consensus       436 ~~~A~~~l~rAl~L-~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDL-EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999 68 4778888899999999999999999999999998874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=5.9e-05  Score=63.37  Aligned_cols=101  Identities=14%  Similarity=0.186  Sum_probs=83.8

Q ss_pred             HHH-HhcCCCChHHHHHHHH-HHhhCcc----------hHHHHhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         19 HFL-LYLLPWRWEPLSAGLR-KKQYISS----------ATNIYNLF----PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        19 ~~L-Lyi~~gk~d~A~elL~-~l~~nps----------~~kA~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      +++ ||-+...+++|++.=+ ..++.|.          |--|-.++    .+.|...+++|..- +|+...++.-||..+
T Consensus       146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG~v~  224 (389)
T COG2956         146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILGRVE  224 (389)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-CccceehhhhhhHHH
Confidence            444 8889999999999888 7777776          22222333    88899999999999 899999999999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~l  120 (122)
                      +..|+|..|++.++.|+.+||+|.--=-+-|-.|+..+
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999665556677777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.99  E-value=3.9e-05  Score=61.96  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -+...|+-|.+.-++. .+..+|++.....-.         |.+|...+++|..+ +|+|..+..-||..|.+.||+++|
T Consensus        75 a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~A  153 (257)
T COG5010          75 ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEA  153 (257)
T ss_pred             HHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHH
Confidence            4555689999999999 888888876555211         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      -.-|++.++..|+.|.+...+
T Consensus       154 r~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010         154 RRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             HHHHHHHHHhccCCchhhhhH
Confidence            999999999999999998776

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.98  E-value=0.00011  Score=58.01  Aligned_cols=93  Identities=9%  Similarity=0.001  Sum_probs=70.6

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHh--------hC----HHHHHHHHHHHHHhhCCCChHH---HH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYN--------LF----PDDAVVQYTQACRIIGTSDLAL---HQ   76 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--------~l----y~dAa~~ye~Aw~l~~~~~~~v---gy   76 (122)
                      ..+++-.  -+.+.|+|++|.+.|+ ++...|..+.+-.        +.    |++|+..|++..+. .|++|.+   .|
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-~P~~~~~~~a~Y  110 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CcCCCchHHHHH
Confidence            3344444  6677899999999999 9999998766642        11    99999999999999 7888765   57


Q ss_pred             HHHHHHHhcc------------------cHHHHHHHHHHHHHhCCCCHHH
Q psy16144         77 KLASLLLRMK------------------RYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        77 kLA~~ylk~k------------------r~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .+|.++...+                  .-.+|+..++++++.+|+.+-+
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya  160 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT  160 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence            7787654443                  1357999999999999987544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.97  E-value=2.3e-05  Score=58.26  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=38.2

Q ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         68 GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        68 ~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      ++-.+.+-+.||++|.+.|+|++|++.+++.+++||++|+|-
T Consensus        43 g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen   43 GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            456678899999999999999999999999999999999874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.97  E-value=2.8e-05  Score=61.32  Aligned_cols=57  Identities=11%  Similarity=0.027  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHH---HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALH---QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vg---ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|+..|++.... .|..+.+-   +.||.+|.+.|+|.+|+..++++++.+|++|++--
T Consensus        48 y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         48 WKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            99999999999998 79988887   99999999999999999999999999999999853

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=6.8e-05  Score=60.76  Aligned_cols=88  Identities=16%  Similarity=0.128  Sum_probs=71.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhcc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRII--GTSDLALHQKLASLLLRMK   86 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~--~~~~~~vgykLA~~ylk~k   86 (122)
                      =++.+|+|+.|++.|+ =++-=|+++   .|+..+         |++|+..|..+.+--  .|.-|...+|||-+....|
T Consensus       150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            4556799999999999 777777743   333322         999999999987751  2445678999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         87 RYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        87 r~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      +.++|-.++++|.+.+|+.+..+
T Consensus       230 ~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         230 NTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999887664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.94  E-value=8.4e-05  Score=53.25  Aligned_cols=72  Identities=18%  Similarity=0.079  Sum_probs=45.4

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHh---hC---------HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYN---LF---------PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRY   88 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e---~l---------y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~   88 (122)
                      +.|+.+.+.+.+. .++-+|+.+.+..   .+         |++|...|+.+.+-. |++   +.+.++||.+++..|+|
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence            5667777777777 6666776633322   11         777777777777663 433   34566777777777777


Q ss_pred             HHHHHHHHH
Q psy16144         89 AEAIDVSQT   97 (122)
Q Consensus        89 ~~AI~vc~k   97 (122)
                      ++|+++++.
T Consensus       102 d~Al~~L~~  110 (145)
T PF09976_consen  102 DEALATLQQ  110 (145)
T ss_pred             HHHHHHHHh
Confidence            777776655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.94  E-value=1.1e-05  Score=50.14  Aligned_cols=56  Identities=16%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      ++.|+|++|.++|+ +++.+|++..++..+         +++|...++++... +|+++.+..-+|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCHHHHHHHHhc
Confidence            56899999999999 999999999998854         99999999999999 6988887766653

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.92  E-value=0.00014  Score=56.26  Aligned_cols=81  Identities=14%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHh-----hC--------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc-
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYN-----LF--------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR-   87 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e-----~l--------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr-   87 (122)
                      |+.|.+... ....||.++.++.     ++              ++||+.-|+.|+.+ +|+...+.+.||.+|.-.++ 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhh
Confidence            678888888 8899999888776     11              99999999999999 89999999999999988776 


Q ss_pred             ----------HHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         88 ----------YAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        88 ----------~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                                |.+|.+.++++.+.+|++.--|+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k  118 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK  118 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence                      88899999999999999987776

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0548|consensus

Probab=97.89  E-value=7.6e-05  Score=65.39  Aligned_cols=87  Identities=11%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -+.+.|+|.+|+..+. +++.||+++++|-     |+    |..|...-+.+.++ +|+++...++-|-++--+++|.+|
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888 8888888888776     22    88888888888888 788888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      .++|++.|..+|+...+-
T Consensus       446 leay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  446 LEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHhcCchhHHHH
Confidence            888888888888766553

>TIGR00540 hemY_coli hemY protein

Probab=97.89  E-value=0.00017  Score=59.92  Aligned_cols=87  Identities=11%  Similarity=0.041  Sum_probs=47.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL-ALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~-~vgykLA~~ylk~kr~~~   90 (122)
                      +....|+++.|++.+. ..++.|+..-++...         ++.|...|+++.+.. |++. .+...+|..++..|++++
T Consensus        93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence            4555566666666666 555555533333211         566666666665552 4432 455555666666666666


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir  109 (122)
                      |.+..++.++.+|++|.+.
T Consensus       172 Al~~l~~l~~~~P~~~~~l  190 (409)
T TIGR00540       172 ARHGVDKLLEMAPRHKEVL  190 (409)
T ss_pred             HHHHHHHHHHhCCCCHHHH
Confidence            6666666666666666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0543|consensus

Probab=97.89  E-value=0.00014  Score=61.98  Aligned_cols=91  Identities=11%  Similarity=0.163  Sum_probs=76.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch-------HHHHh-------------hC----HHHHHHHHHHHHHhhCCCChHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA-------TNIYN-------------LF----PDDAVVQYTQACRIIGTSDLALHQ   76 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~-------~kA~e-------------~l----y~dAa~~ye~Aw~l~~~~~~~vgy   76 (122)
                      .|.+.|+|..|...++ +++.-..+       .+..+             ++    |++|+.+=.+++++ +|+|+-+.|
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALy  295 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALY  295 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHH
Confidence            7888899999988877 65543321       11111             11    99999999999999 799999999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      +=|.+|+-.+.|.+|+..+++|++..|++-.|+.+|.
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~  332 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI  332 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9999999999999999999999999999998988875

>KOG2076|consensus

Probab=97.87  E-value=0.0002  Score=65.89  Aligned_cols=80  Identities=16%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------------------------------------HHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------------------------------------PDDAV   57 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------------------------------y~dAa   57 (122)
                      ++++ |++++|+++|. +++++|-.+.||+.+                                           ++.|.
T Consensus       149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            3444 77777777777 777777777777633                                           77888


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         58 VQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        58 ~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      -+|-+|+.+ +|.+-..-++-+..|.++|.+..|.+.+.+++...|
T Consensus       228 ~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  228 YCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            888888888 688888888888888888888888888888888888

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.85  E-value=0.00012  Score=58.72  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++|+..|+...+. .|++   |.+.|.||..|...|+|.+|+..+++|++.+|++|+.-.-.
T Consensus       159 y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        159 QDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            99999999999999 6988   58999999999999999999999999999999988775433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.83  E-value=5e-05  Score=40.93  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         74 LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        74 vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      +.|++|.+|.+.|++.+|++.++++++.+|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67999999999999999999999999999975

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=5.1e-05  Score=61.46  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-----HHhhC------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-----IYNLF------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-----A~e~l------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      +|+..+|+|.|.+.++ .-+.+.+..-     ||-.+      |.+|.-.|+..-+- -+.+|.+...+|.+.+..|+|.
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~  218 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYE  218 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHH
Confidence            8889999999999999 8777776443     33222      89999999997665 3678899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+++..++|..+|++|..-..
T Consensus       219 eAe~~L~~al~~~~~~~d~LaN  240 (290)
T PF04733_consen  219 EAEELLEEALEKDPNDPDTLAN  240 (290)
T ss_dssp             HHHHHHHHHCCC-CCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHH
Confidence            9999999999999999886443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162|consensus

Probab=97.77  E-value=0.00018  Score=65.40  Aligned_cols=85  Identities=12%  Similarity=0.084  Sum_probs=73.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      ++...|+.++|.+.|. ++..||+.+...-     ++      -.++......|.++ +|+||.++|.||-++.+.|+..
T Consensus       693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchH
Confidence            7888999999999999 9999999665443     12      44444599999999 7999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q psy16144         90 EAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypk  107 (122)
                      +|.++|..++...+..|=
T Consensus       772 ~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  772 QAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHhhccCCCc
Confidence            999999999999998874

>KOG2076|consensus

Probab=97.77  E-value=0.00047  Score=63.43  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEK  115 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~k  115 (122)
                      +++|......+.+. +|.++.+.+.||-.|...|+.++|....-.+--.+|..+..|+.+=|-
T Consensus       155 ~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            88999999999999 799999999999999999998888887777777888877777765443

>KOG0624|consensus

Probab=97.70  E-value=0.00043  Score=59.11  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=64.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc---hHHHHhhC---------------------------------------------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS---ATNIYNLF---------------------------------------------   52 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps---~~kA~e~l---------------------------------------------   52 (122)
                      |+-+.|+.+.+..-+| ||+.||+   |.-.|--+                                             
T Consensus       232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r  311 (504)
T KOG0624|consen  232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR  311 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence            6777899999999999 9999998   33333210                                             


Q ss_pred             -----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy16144         53 -----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMV  118 (122)
Q Consensus        53 -----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~  118 (122)
                                 +.+|+..-..++.. .|+|..+.+.=|-.|+-.-.|++||.-|+++++.+|++.++| +-+++|.+
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r-eGle~Akr  386 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR-EGLERAKR  386 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH-HHHHHHHH
Confidence                       55566666666666 466666666666666666666666666666666666666666 35565543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.69  E-value=8.9e-05  Score=47.34  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~ly~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~  100 (122)
                      +|...|+|++|.++++ +++.....+.                   .+|.-..+.++||.+|...|++.+|+..++++++
T Consensus        14 ~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   14 VYRELGRYDEALDYYEKALDIEEQLGD-------------------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTTT-------------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6667777777777777 6654221110                   0112245678999999999999999999999997


Q ss_pred             h
Q psy16144        101 A  101 (122)
Q Consensus       101 ~  101 (122)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            5

...

>KOG0548|consensus

Probab=97.66  E-value=0.00033  Score=61.49  Aligned_cols=88  Identities=14%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----h--C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----L--F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~--l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ...++|+|+.|+.++. ++.+.|.+..-|.     |  +  |.+|..-=.+..++ +|+=|-...++|..+.-.|+|++|
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-~p~w~kgy~r~Gaa~~~lg~~~eA   89 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-NPDWAKGYSRKGAALFGLGDYEEA   89 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-CCchhhHHHHhHHHHHhcccHHHH
Confidence            5678999999999999 9999998554443     1  1  99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      +.-|.+-|+.+|+++-++.
T Consensus        90 ~~ay~~GL~~d~~n~~L~~  108 (539)
T KOG0548|consen   90 ILAYSEGLEKDPSNKQLKT  108 (539)
T ss_pred             HHHHHHHhhcCCchHHHHH
Confidence            9999999999999887764

>PRK11906 transcriptional regulator; Provisional

Probab=97.65  E-value=0.00036  Score=60.42  Aligned_cols=77  Identities=13%  Similarity=0.026  Sum_probs=54.7

Q ss_pred             ChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Q psy16144         28 RWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQT   97 (122)
Q Consensus        28 k~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~k   97 (122)
                      .-.+|.++-+ +++++|+++.|+-.+         ++.|...+++|..+ +|+++.+.|-+|.+..-.|+.++|++..++
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-STDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3456666666 777777777766633         77777777777777 577777777777777777777777777777


Q ss_pred             HHHhCCCC
Q psy16144         98 IMKAHPSY  105 (122)
Q Consensus        98 VL~~~P~y  105 (122)
                      .++.+|.-
T Consensus       398 alrLsP~~  405 (458)
T PRK11906        398 SLQLEPRR  405 (458)
T ss_pred             HhccCchh
Confidence            77777743

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00037  Score=57.15  Aligned_cols=81  Identities=21%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc---cHHHHHHHH
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK---RYAEAIDVS   95 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k---r~~~AI~vc   95 (122)
                      .+.-..-++ -|+.||++++.|-.+         +.+|...|.+|.++ .|+||.+.--+|-.+.-+.   .-.++.++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            444566788 999999999999855         99999999999999 5999999999998887654   356899999


Q ss_pred             HHHHHhCCCCHHHHH
Q psy16144         96 QTIMKAHPSYPKVHK  110 (122)
Q Consensus        96 ~kVL~~~P~ypkir~  110 (122)
                      +++|+.+|++++.+.
T Consensus       217 ~~al~~D~~~iral~  231 (287)
T COG4235         217 RQALALDPANIRALS  231 (287)
T ss_pred             HHHHhcCCccHHHHH
Confidence            999999999998864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.55  E-value=0.00044  Score=60.45  Aligned_cols=84  Identities=19%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++++  .|...|.+++|.++++ +++++|.++..|..-         +++|+...+.|-.+ +..|--+-.+.+--+++.
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-D~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-DLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-ChhhHHHHHHHHHHHHHC
Confidence            3566  7889999999999999 999999999877622         99999999999999 899999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhC
Q psy16144         86 KRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~  102 (122)
                      |+.++|+.++-..-+.+
T Consensus       276 ~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  276 GRIEEAEKTASLFTRED  292 (517)
T ss_pred             CCHHHHHHHHHhhcCCC
Confidence            99999999998776544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0543|consensus

Probab=97.55  E-value=0.0013  Score=56.16  Aligned_cols=100  Identities=11%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             cchhHHHHHHHHH---HHHHH-HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCC
Q psy16144          4 LSVDTMQIIQTIA---EWHFL-LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus         4 ~~~~~~~~~~~~~---~~~~L-Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~   69 (122)
                      .+.+..+..+.+-   -+++- -|+..++|+.|.+.+. +|...|.+.||..+-         |++|..-|++|.++ .|
T Consensus       244 ~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P  322 (397)
T KOG0543|consen  244 FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL-EP  322 (397)
T ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CC
Confidence            4445555554432   22332 8999999999999999 999999999999833         99999999999999 79


Q ss_pred             CChHHHHHHHHHHHhcccHHHH-HHHHHHHHHhCCC
Q psy16144         70 SDLALHQKLASLLLRMKRYAEA-IDVSQTIMKAHPS  104 (122)
Q Consensus        70 ~~~~vgykLA~~ylk~kr~~~A-I~vc~kVL~~~P~  104 (122)
                      +|-+|--.|..+-.|.+++.+. -++|++.++.-+.
T Consensus       323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  323 SNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999987 7889998876653

>KOG4234|consensus

Probab=97.55  E-value=0.00089  Score=53.65  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             HHHHHHHHH-----HhcCCCChHHHHHHHH-HHhhCcchHHHHh---hC-----------HHHHHHHHHHHHHhhCCCCh
Q psy16144         13 QTIAEWHFL-----LYLLPWRWEPLSAGLR-KKQYISSATNIYN---LF-----------PDDAVVQYTQACRIIGTSDL   72 (122)
Q Consensus        13 ~~~~~~~~L-----Lyi~~gk~d~A~elL~-~l~~nps~~kA~e---~l-----------y~dAa~~ye~Aw~l~~~~~~   72 (122)
                      +.+++..-|     =....|.|++|..-.. +|..-|+|+--..   |.           ++.|+.---+|+++ +|+..
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~  168 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYE  168 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhH
Confidence            345555445     2344599999999999 9999998765211   22           88999999999999 89999


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      .+.-+=|+.|.+..+|++|++=|.++|..+|..-.+|+-|+
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            99999999999999999999999999999998877776664

>KOG0550|consensus

Probab=97.55  E-value=0.00016  Score=62.30  Aligned_cols=83  Identities=19%  Similarity=0.101  Sum_probs=71.9

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------------------HHHHHHHHHHHHHhhCCCChHH----HHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------------------PDDAVVQYTQACRIIGTSDLAL----HQKL   78 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------------------y~dAa~~ye~Aw~l~~~~~~~v----gykL   78 (122)
                      -.+..|+|...++ .|...|++.++--..                     |.+|..+|..|+.+ +|+|...    .++.
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~n~~~naklY~nr  293 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DPSNKKTNAKLYGNR  293 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-CccccchhHHHHHHh
Confidence            4477899999999 999999987765511                     99999999999999 6887655    6778


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |-+..+.||..|||..|..+|+++|.|-+.
T Consensus       294 a~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  294 ALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             HhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            999999999999999999999999999776

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.48  E-value=0.0002  Score=42.07  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=30.2

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNL   51 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~   51 (122)
                      -|..+  .|.+.|++|+|++.++ +++.+|+++.+|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            35566  8999999999999999 99999999998864

>KOG0547|consensus

Probab=97.48  E-value=0.00019  Score=62.98  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|+.+|.+|++++ |+-|...-+.|.+|.-.|++.+-|+-|-++|+++|+|.|+
T Consensus       131 Y~eAIkyY~~AI~l~-p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA  185 (606)
T KOG0547|consen  131 YDEAIKYYTQAIELC-PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA  185 (606)
T ss_pred             HHHHHHHHHHHHhcC-CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence            999999999999995 9889999999999999999999999999999999999987

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.46  E-value=0.00089  Score=45.72  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q psy16144         56 AVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY--PKVHKQIFE  114 (122)
Q Consensus        56 Aa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y--pkir~~il~  114 (122)
                      ....++++.+- +|+|+.+-|.||-.++..|++++|++.+-.+++.+|++  -..|+..++
T Consensus         7 ~~~al~~~~a~-~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~   66 (90)
T PF14561_consen    7 DIAALEAALAA-NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLD   66 (90)
T ss_dssp             HHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHH
T ss_pred             cHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHH
Confidence            35678889998 89999999999999999999999999999999999988  666666554

>smart00028 TPR Tetratricopeptide repeats

Probab=97.46  E-value=0.0003  Score=35.16  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      +.+.+.+|..|...|++.+|+..++++++.+|++
T Consensus         1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            3577899999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.46  E-value=0.00071  Score=57.46  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +++..++-.+|..+++ +++.+|.++..+.     ++    |+.|....++|.++ .|++....+.||.+|.+.|+|+.|
T Consensus       209 v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  209 VYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHH
Confidence            6777778888888888 8888887655443     22    88888888888888 488888888888888888888888


Q ss_pred             HHHH
Q psy16144         92 IDVS   95 (122)
Q Consensus        92 I~vc   95 (122)
                      +.+.
T Consensus       288 LlaL  291 (395)
T PF09295_consen  288 LLAL  291 (395)
T ss_pred             HHHH
Confidence            8743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=97.45  E-value=0.0007  Score=58.67  Aligned_cols=56  Identities=7%  Similarity=-0.089  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      -.+|...-++|.++ +|+||.+.+.||+.+.-.+++..|+..+++++..+||++.++
T Consensus       320 ~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~  375 (458)
T PRK11906        320 AQKALELLDYVSDI-TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLY  375 (458)
T ss_pred             HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHH
Confidence            56677777777777 677777777777777777777777777777777777777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.39  E-value=0.0015  Score=49.69  Aligned_cols=58  Identities=19%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |.+|+..|+..... .|.   -+.+.+.||.+|.+.|+|.+|+..+++.++.+|++|.+-.-
T Consensus        21 y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen   21 YEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            99999999999987 354   45778999999999999999999999999999999987543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.37  E-value=0.0042  Score=44.37  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY   88 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~   88 (122)
                      .+...|++++|.+.|+ ++...|+..   .+...+         |++|...++.. . .++-.+.+...+|..|++.|++
T Consensus        57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~-~~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-P-DEAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-c-CcchHHHHHHHHHHHHHHCCCH
Confidence            8889999999999999 999876642   233322         99999999773 2 2466788899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy16144         89 AEAIDVSQTIM   99 (122)
Q Consensus        89 ~~AI~vc~kVL   99 (122)
                      .+|+..|+++|
T Consensus       135 ~~A~~~y~~Al  145 (145)
T PF09976_consen  135 DEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHhC
Confidence            99999999874

>KOG0547|consensus

Probab=97.37  E-value=0.0019  Score=56.93  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhh-----C----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNL-----F----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~-----l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|++....++-...|. +..+||.++..|.-     +    |++|..-|++|..+ +|.|.-...-|++..-|.+++.++
T Consensus       369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~  447 (606)
T KOG0547|consen  369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAYIQLCCALYRQHKIAES  447 (606)
T ss_pred             HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999 99999999988871     1    99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      ...++.+-+..|+-|.+
T Consensus       448 m~~Fee~kkkFP~~~Ev  464 (606)
T KOG0547|consen  448 MKTFEEAKKKFPNCPEV  464 (606)
T ss_pred             HHHHHHHHHhCCCCchH
Confidence            99999999999998876

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00056  Score=37.27  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      .+.+.+|..|.+.|++.+|+..++++++.+|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467899999999999999999999999999975

...

>KOG1128|consensus

Probab=97.30  E-value=0.002  Score=58.54  Aligned_cols=101  Identities=14%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchH-----------------HHHhhC----------------
Q psy16144          9 MQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSAT-----------------NIYNLF----------------   52 (122)
Q Consensus         9 ~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~-----------------kA~e~l----------------   52 (122)
                      .+|...+.-|--.  -|...|+.+.|++.++ -++ +|+.+                 +|||+.                
T Consensus       418 l~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~  496 (777)
T KOG1128|consen  418 LVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL  496 (777)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc
Confidence            3455555555544  6788899999999999 888 44433                 344411                


Q ss_pred             ----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 ----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 ----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                          |.+|-.+++...++ +|-.+...|.+|.+.++.+++..|...|+..+...||+...+..
T Consensus       497 ~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnN  558 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNN  558 (777)
T ss_pred             cchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhh
Confidence                78888888888888 78888889999999999999999999999999999988877764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.30  E-value=0.0053  Score=52.21  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=80.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      +.-..++++.|.++|+ ..+.+|+.....-  ++    -.+|+....++++. +|.+.......|..+++.|+++.|+.+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4445689999999999 9999998433322  11    88999999999988 799999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         95 SQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        95 c~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      .+++....|+..+.|.. |-+++..
T Consensus       257 Ak~av~lsP~~f~~W~~-La~~Yi~  280 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQ-LAECYIQ  280 (395)
T ss_pred             HHHHHHhCchhHHHHHH-HHHHHHh
Confidence            99999999999999864 6665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0495|consensus

Probab=97.29  E-value=0.0024  Score=58.08  Aligned_cols=91  Identities=15%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |.|.  .+-..|+...|..+|. +.+.||.+-+.|..-         |+.|-..+.+|-..+ |+ +.+.||-+..---.
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-gT-eRv~mKs~~~er~l  664 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GT-ERVWMKSANLERYL  664 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-Cc-chhhHHHhHHHHHh
Confidence            5555  6777899999999999 999999999999832         999999999999984 54 89999999998899


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +..++|+.+|+..|+.+|+++|++.
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~l  689 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWL  689 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHH
Confidence            9999999999999999999999864

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.28  E-value=0.0021  Score=56.52  Aligned_cols=90  Identities=17%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC-------HHHHHHHHHHHHHhhC--------------------CCC----h
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF-------PDDAVVQYTQACRIIG--------------------TSD----L   72 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l-------y~dAa~~ye~Aw~l~~--------------------~~~----~   72 (122)
                      +......-.++=+ +|+.||+|+.||-.+       ..||...|++|++.+.                    .++    +
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~  259 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV  259 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence            4556666677777 999999999999877       7788888888876521                    011    3


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS--YPKVHKQIFE  114 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~--ypkir~~il~  114 (122)
                      -+-.+||-+.-|.||..|||+.++..++.+|.  .--||...++
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie  303 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIE  303 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHH
Confidence            35678999999999999999999999999984  5667765444

The molecular function of this protein is uncertain.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=0.0021  Score=46.15  Aligned_cols=88  Identities=20%  Similarity=0.059  Sum_probs=61.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--------hC----HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--------LF----PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--------~l----y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~   85 (122)
                      .+-..|+.++|+.+++ ++..-.+.....+        +.    +++|...++++..- .|+   +..+-.-+|-.+...
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHHC
Confidence            5667788888888888 8876555432222        11    88888888888776 577   777777788888888


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      ||+.+|++.+-.+|..+  -|+-++-|
T Consensus        89 gr~~eAl~~~l~~la~~--~~~y~ra~  113 (120)
T PF12688_consen   89 GRPKEALEWLLEALAET--LPRYRRAI  113 (120)
T ss_pred             CCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            88888888887777633  33444444

>KOG2003|consensus

Probab=97.22  E-value=0.0032  Score=55.66  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=79.3

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI   92 (122)
                      ..-.|++|.|.+..+ +|.-+.||..|..-.         .++|..+|-+.-.+. -++..|.+.+|..|........||
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHH
Confidence            334599999999999 999999999998833         899999999888875 789999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q psy16144         93 DVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        93 ~vc~kVL~~~P~ypkir~~i  112 (122)
                      +.+-++-..-|+.|.|-...
T Consensus       579 e~~~q~~slip~dp~ilskl  598 (840)
T KOG2003|consen  579 ELLMQANSLIPNDPAILSKL  598 (840)
T ss_pred             HHHHHhcccCCCCHHHHHHH
Confidence            99999999999999885443

>KOG1840|consensus

Probab=97.19  E-value=0.003  Score=55.33  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH---------------HHhhC--HHHHHHHHHHHHH---hhCCCChH---HHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN---------------IYNLF--PDDAVVQYTQACR---IIGTSDLA---LHQK   77 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k---------------A~e~l--y~dAa~~ye~Aw~---l~~~~~~~---vgyk   77 (122)
                      +|..+|||++|+++++ +++.+.+...               +++.+  |.+|...|+.+..   .++|+.|.   ..-+
T Consensus       376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n  455 (508)
T KOG1840|consen  376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN  455 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence            8999999999999999 9988754221               12222  6666666665543   23555554   4568


Q ss_pred             HHHHHHhcccHHHHHHHHHHHH
Q psy16144         78 LASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        78 LA~~ylk~kr~~~AI~vc~kVL   99 (122)
                      ||..|-.+|||++|+++-++|+
T Consensus       456 L~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  456 LAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHcccHHHHHHHHHHHH
Confidence            9999999999999999999998

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.19  E-value=0.0013  Score=56.94  Aligned_cols=42  Identities=14%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             hCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         67 IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        67 ~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .+|+++...++||..|.+.|+|++|++.|+++|+++|+++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA  111 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA  111 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence            489999999999999999999999999999999999999854

>KOG1173|consensus

Probab=97.18  E-value=0.003  Score=56.11  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -|.-.|++++|..+|- +...||+.+.||-..         .++|..+|-.|-++- |...-..+=||-=|++.+.+.-|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence            4556699999999999 999999999999955         889999999998885 55555556678888999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il  113 (122)
                      ..-+.+++.+.|+.|-+..|+=
T Consensus       400 e~Ff~~A~ai~P~Dplv~~Elg  421 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDPLVLHELG  421 (611)
T ss_pred             HHHHHHHHhcCCCcchhhhhhh
Confidence            9999999999999998887763

>PRK15331 chaperone protein SicA; Provisional

Probab=97.15  E-value=0.0018  Score=49.33  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|...|+-.+-+ +|-|+...+-||.++...|+|.+||+.|--.....++.|+.
T Consensus        53 ~~eA~~~F~~L~~~-d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         53 LDEAETFFRFLCIY-DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            99999999999999 89999999999999999999999999999999999988874

>KOG2002|consensus

Probab=97.14  E-value=0.0023  Score=59.56  Aligned_cols=88  Identities=11%  Similarity=0.065  Sum_probs=71.7

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC----------------------------------------------HHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF----------------------------------------------PDDA   56 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l----------------------------------------------y~dA   56 (122)
                      -....++.|..++. +-..|+.||.+...+                                              |+.|
T Consensus       247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA  326 (1018)
T KOG2002|consen  247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA  326 (1018)
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence            34456777777777 777777777665522                                              9999


Q ss_pred             HHHHHHHHHhhCCCC-hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         57 VVQYTQACRIIGTSD-LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        57 a~~ye~Aw~l~~~~~-~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      -.+|.+|... ++++ .=..+.||..|++.|.+..|+-++++|++++|+.+...+ ||
T Consensus       327 ~~yY~~s~k~-~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~-iL  382 (1018)
T KOG2002|consen  327 FKYYMESLKA-DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK-IL  382 (1018)
T ss_pred             HHHHHHHHcc-CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH-HH
Confidence            9999999999 5666 777889999999999999999999999999999988764 44

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.07  E-value=0.00061  Score=38.55  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      ...||..|.+.|+|.+||++|+++|...+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999664443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.06  E-value=0.003  Score=50.18  Aligned_cols=75  Identities=24%  Similarity=0.334  Sum_probs=53.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---HHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHhcccHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---PDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---y~dAa~~ye~Aw~l~~~~~-----~~vgykLA~~ylk~kr~~~AI   92 (122)
                      +|...|+++.|-+.+. +       ++.++-.   +++|..+|++|.++-...+     ..+..++|..+.+.|+|.+|+
T Consensus       103 ~y~~~G~~~~aA~~~~~l-------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen  103 IYREAGRFSQAAKCLKEL-------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             HHHHCT-HHHHHHHHHHH-------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHhcCcHHHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            6666666666666655 3       2333322   8999999999998743333     234578999999999999999


Q ss_pred             HHHHHHHHhCC
Q psy16144         93 DVSQTIMKAHP  103 (122)
Q Consensus        93 ~vc~kVL~~~P  103 (122)
                      ++|+++....-
T Consensus       176 ~~~e~~~~~~l  186 (282)
T PF14938_consen  176 EIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHhh
Confidence            99999997644

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.06  E-value=0.016  Score=41.60  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---CHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS---YPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~---ypkir  109 (122)
                      .++|+..|++|.+. +.+.   ..+...||..|...|++++|+.+.++.+..+|+   ++.++
T Consensus        17 ~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen   17 EEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             HHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            99999999999997 3444   567889999999999999999999999999998   66665

>KOG1128|consensus

Probab=97.03  E-value=0.0029  Score=57.52  Aligned_cols=90  Identities=11%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +..++++|.+|.+.|+ .++.||-....|...         ++.|+..|..+..+ .|++....-+|+-.|++.|+-.+|
T Consensus       494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra  572 (777)
T KOG1128|consen  494 LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRA  572 (777)
T ss_pred             ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHH
Confidence            4455799999999999 999999988888844         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      -.+..++|+-+-++++|+.+=
T Consensus       573 ~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  573 FRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             HHHHHHHhhcCCCCCeeeech
Confidence            999999999888888887653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.02  E-value=0.004  Score=50.35  Aligned_cols=56  Identities=13%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |++|+..|+..-.- .|.   .+.+-..||+++.|.++|++|+..-.+-+++||++|.+-
T Consensus        50 ~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          50 YEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             HHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            66777777666543 344   357889999999999999999999999999999999873

>KOG0624|consensus

Probab=96.99  E-value=0.0017  Score=55.60  Aligned_cols=83  Identities=10%  Similarity=0.032  Sum_probs=73.3

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      -.|.+..|...+. +++.||.+..|+.     |+    -+.|..-+.+.+++ +|++-.+-.-=|.++||+|+++.|++=
T Consensus        50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg~vllK~Gele~A~~D  128 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRGVVLLKQGELEQAEAD  128 (504)
T ss_pred             HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhchhhhhcccHHHHHHH
Confidence            3488999999999 9999999988887     33    67888899999999 799999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHH
Q psy16144         95 SQTIMKAHPSYPKV  108 (122)
Q Consensus        95 c~kVL~~~P~ypki  108 (122)
                      +++||..+|++--.
T Consensus       129 F~~vl~~~~s~~~~  142 (504)
T KOG0624|consen  129 FDQVLQHEPSNGLV  142 (504)
T ss_pred             HHHHHhcCCCcchh
Confidence            99999999966443

>KOG1174|consensus

Probab=96.97  E-value=0.0043  Score=54.04  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                      -++|.+++. .|++||.-..|-...         ++|++..+|+++..  ..|....-+||..+--.+.+.+|.+-|.++
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            466777777 777777766665522         88888888888776  456778888888888888888888888888


Q ss_pred             HHhCCCCHHHH
Q psy16144         99 MKAHPSYPKVH  109 (122)
Q Consensus        99 L~~~P~ypkir  109 (122)
                      |+++|++-+..
T Consensus       498 Lr~dP~~~~sl  508 (564)
T KOG1174|consen  498 LRQDPKSKRTL  508 (564)
T ss_pred             HhcCccchHHH
Confidence            88888776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.96  E-value=0.0025  Score=39.88  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         74 LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        74 vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      -.|-||..+.|.|+|.+|...|+.+|+..|+++.++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            468899999999999999999999999999998874

>KOG4340|consensus

Probab=96.93  E-value=0.0049  Score=52.08  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             Hh--cCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LY--LLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Ly--i~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      +|  |+..||++|.+++. -.+.||.+..+...+         |..|+.||++...+ .|.-..--+--|..+-++++|.
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccH
Confidence            55  78899999999999 999999656655533         99999999999999 5766665566689999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      ||+.|-..+    -|+|..+.+.+.
T Consensus        96 DALrV~~~~----~D~~~L~~~~lq  116 (459)
T KOG4340|consen   96 DALRVAFLL----LDNPALHSRVLQ  116 (459)
T ss_pred             HHHHHHHHh----cCCHHHHHHHHH
Confidence            999955444    466778777764

>KOG0376|consensus

Probab=96.92  E-value=0.0017  Score=56.51  Aligned_cols=92  Identities=10%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -....++||.|+.+.. +++.+|+|+..|.     ++    |..|..=..+|.++ .|+..-..++=|...|+.++|-+|
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-dP~~~K~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-DPTYIKAYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-CchhhheeeeccHHHHhHHHHHHH
Confidence            3456689999999999 9999999987665     22    99999999999999 599999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~il~  114 (122)
                      ...++++.+..|+-|++++-|-|
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~E  114 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDE  114 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHH
Confidence            99999999999999999987654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.85  E-value=0.01  Score=48.16  Aligned_cols=99  Identities=16%  Similarity=0.108  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         11 IIQTIAEWHFLLYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        11 ~~~~~~~~~~LLyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      ++-.+++...-++....++.+|--.++ ....-++.+.....+         |++|...+++|.+. +|++|.+..+|+.
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv  243 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIV  243 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHH
Confidence            444456655667777789999999999 777656656655532         99999999999998 8999999999999


Q ss_pred             HHHhcccHHH-HHHHHHHHHHhCCCCHHHHH
Q psy16144         81 LLLRMKRYAE-AIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        81 ~ylk~kr~~~-AI~vc~kVL~~~P~ypkir~  110 (122)
                      +..-.|+..+ +.....+.-..+|++|-+..
T Consensus       244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            9999999844 44556666668999998864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060|consensus

Probab=96.84  E-value=0.018  Score=47.17  Aligned_cols=86  Identities=13%  Similarity=0.034  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc---cHHHHH
Q psy16144         26 PWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK---RYAEAI   92 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k---r~~~AI   92 (122)
                      +||.-+|.+.|. -++..+++..||-++         |+.|+-|||...-. +|.+|...-+||-.+--.|   ++.-|-
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344445555555 555555555555422         55555555555544 3555555555554443322   233344


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q psy16144         93 DVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        93 ~vc~kVL~~~P~ypkir~~i  112 (122)
                      ..|.++|+.+|.+-+..-.|
T Consensus       212 kyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHH
Confidence            45555555555444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.83  E-value=0.0099  Score=55.38  Aligned_cols=93  Identities=10%  Similarity=0.083  Sum_probs=75.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------------------------HHHHHHHHHHHHHhhCCCCh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------------------------PDDAVVQYTQACRIIGTSDL   72 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------------------------y~dAa~~ye~Aw~l~~~~~~   72 (122)
                      .|-+.|++++|....+ +|+++|+++.+...+                            |.++...+++-+++ +|.+.
T Consensus       125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~-~~~d~  203 (906)
T PRK14720        125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY-NSDDF  203 (906)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc-Ccccc
Confidence            7778899999999999 999999998887733                            55566666666666 67766


Q ss_pred             HHH--------------------HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16144         73 ALH--------------------QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEK  115 (122)
Q Consensus        73 ~vg--------------------ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~k  115 (122)
                      ...                    +-|=..|-+.+++.++|.+.+.+|+.+|++-+.+.+|.+-
T Consensus       204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~  266 (906)
T PRK14720        204 DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF  266 (906)
T ss_pred             hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence            662                    2233778889999999999999999999999999998763

>KOG1127|consensus

Probab=96.83  E-value=0.0061  Score=57.38  Aligned_cols=83  Identities=14%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh---cccH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR---MKRY   88 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk---~kr~   88 (122)
                      .++...|++|.|.++ +|+.||++..||-.+          .++|..+|..|-++ .|++.-+.--|+..|.+   .-.+
T Consensus        12 al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKl-dpdnlLAWkGL~nLye~~~dIl~l   90 (1238)
T KOG1127|consen   12 ALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKL-DPDNLLAWKGLGNLYERYNDILDL   90 (1238)
T ss_pred             HHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhc-ChhhhHHHHHHHHHHHccchhhhh
Confidence            356688999999999 999999999998865          89999999999999 79999999999999998   6678


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q psy16144         89 AEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~yp  106 (122)
                      .++-.+|.+.+...|+.-
T Consensus        91 d~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   91 DRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             hHhHHHHHHHHHhhhhhh
Confidence            899999999999999765

>KOG1129|consensus

Probab=96.77  E-value=0.011  Score=50.41  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      -|.+.|-+-+|++-|+ .|+..|- ++-|.++         +.-|...|..-++- -|-+.+.....|..+.-++++++|
T Consensus       232 CylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a  309 (478)
T KOG1129|consen  232 CYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA  309 (478)
T ss_pred             HHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence            7888999999999999 9998885 5555544         88899999999998 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q psy16144         92 IDVSQTIMKAHPSYPK  107 (122)
Q Consensus        92 I~vc~kVL~~~P~ypk  107 (122)
                      ...|+.||++||.+..
T Consensus       310 ~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  310 LQLYKLVLKLHPINVE  325 (478)
T ss_pred             HHHHHHHHhcCCccce
Confidence            9999999999998753

>KOG3060|consensus

Probab=96.77  E-value=0.016  Score=47.44  Aligned_cols=90  Identities=12%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++=-.|.+++|.+++. .|+-||.+.-.+-.-         -.+|++....-++. -++|+.++-.||-.|+-.|.|..|
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence            3334577888888888 888888776666522         66777777777777 488889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +=|+++++=..|.+|......
T Consensus       174 ~fClEE~ll~~P~n~l~f~rl  194 (289)
T KOG3060|consen  174 AFCLEELLLIQPFNPLYFQRL  194 (289)
T ss_pred             HHHHHHHHHcCCCcHHHHHHH
Confidence            999999999999998876543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.75  E-value=0.032  Score=48.80  Aligned_cols=81  Identities=14%  Similarity=0.021  Sum_probs=68.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      |++..+|.++|.+.++ ++...|+.+--+-     ++    +++|+........- +|+||....-||..|-+.|+-.+|
T Consensus       349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence            9999999999999999 9999999644333     22    99999999998888 899999999999999999888777


Q ss_pred             HHHHHHHHHhCC
Q psy16144         92 IDVSQTIMKAHP  103 (122)
Q Consensus        92 I~vc~kVL~~~P  103 (122)
                      ..-+-+.+...-
T Consensus       428 ~~A~AE~~~~~G  439 (484)
T COG4783         428 LLARAEGYALAG  439 (484)
T ss_pred             HHHHHHHHHhCC
Confidence            776666665544

>KOG1156|consensus

Probab=96.71  E-value=0.0061  Score=54.96  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=72.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh---hC------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN---LF------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e---~l------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ..-..|+-++|-++.+ .++-++.+.--|-   .+      |++|+++|++|+.+ .|+|.++...|+..-..+++|.-.
T Consensus        50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhhhH
Confidence            4446699999999999 9987777555444   22      99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      .++=.+.|...|.+-.-
T Consensus       129 ~~tr~~LLql~~~~ra~  145 (700)
T KOG1156|consen  129 LETRNQLLQLRPSQRAS  145 (700)
T ss_pred             HHHHHHHHHhhhhhHHH
Confidence            99999999998876443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0024  Score=34.40  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=21.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA   45 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~   45 (122)
                      +|.+.|++++|.+.++ +++++|++
T Consensus        10 ~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen   10 AYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            8889999999999999 99999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2002|consensus

Probab=96.67  E-value=0.0092  Score=55.74  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIG-TSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~-~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      +....|+|++|.+.|. +.+--..|+..|-     |+    |..|+..|+.+.+... .+++.|.--||.+|...|++.+
T Consensus       655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e  734 (1018)
T KOG2002|consen  655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE  734 (1018)
T ss_pred             hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence            5567788888888888 6665545555555     33    8899999999887644 4578888888999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHKQIFEK  115 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~~il~k  115 (122)
                      |.+...+++...|.+|-++.+|...
T Consensus       735 ak~~ll~a~~~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  735 AKEALLKARHLAPSNTSVKFNLALV  759 (1018)
T ss_pred             HHHHHHHHHHhCCccchHHhHHHHH
Confidence            9998999999999888887776543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.65  E-value=0.0023  Score=34.92  Aligned_cols=28  Identities=11%  Similarity=0.010  Sum_probs=23.1

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcch
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSA   45 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~   45 (122)
                      |..+  +|...|++++|++.++ +++++|++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4445  8889999999999999 99999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.65  E-value=0.044  Score=36.41  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=54.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc---hHHHHhhC---------HHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS---ATNIYNLF---------PDDAVVQYTQACRIIGTS-DLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps---~~kA~e~l---------y~dAa~~ye~Aw~l~~~~-~~~vgykLA~~ylk~kr   87 (122)
                      ++...|+++.|.+.+. ++..+|.   ....+...         +.+|...+.++.+. .+. +..+...++..|...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHccc
Confidence            4566777777777777 6665552   12211110         77777777777777 355 57777777777777777


Q ss_pred             HHHHHHHHHHHHHhCCC
Q psy16144         88 YAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~  104 (122)
                      +.+|+..+.+.+...|+
T Consensus       218 ~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         218 YEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHHhhCcc
Confidence            77777777777777775

>KOG1174|consensus

Probab=96.60  E-value=0.014  Score=50.97  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      -+.|-+.|++++++ +|.-..+-.++|-..+.-|++.|+|.+.++.|+..||-.
T Consensus       420 rEKAKkf~ek~L~~-~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~  472 (564)
T KOG1174|consen  420 REKAKKFAEKSLKI-NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN  472 (564)
T ss_pred             HHHHHHHHHhhhcc-CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH
Confidence            67899999999999 799999999999999999999999999999999999753

>KOG4162|consensus

Probab=96.56  E-value=0.037  Score=50.79  Aligned_cols=89  Identities=17%  Similarity=0.161  Sum_probs=81.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...+.-|+|.-.|. +-+..|-|+..|...         ..||-..|..|..+ +|+++.+--.||-.|++.|+..-|
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-dP~hv~s~~Ala~~lle~G~~~la  737 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-DPDHVPSMTALAELLLELGSPRLA  737 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhCCcchH
Confidence            7888888999998888 999999998888733         99999999999999 899999999999999999999888


Q ss_pred             HH--HHHHHHHhCCCCHHHHHH
Q psy16144         92 ID--VSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~--vc~kVL~~~P~ypkir~~  111 (122)
                      .+  +.+.+++.+|++|++|.-
T Consensus       738 ~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  738 EKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHH
Confidence            88  999999999999999864

>KOG3081|consensus

Probab=96.47  E-value=0.031  Score=46.05  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      +.||.-.|+.--+.+ +..|....-+|.+.+..+||++|..+.+.+|..+|++|..-...+-
T Consensus       189 ~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             hhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            999999999999875 4468999999999999999999999999999999999987655443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.43  E-value=0.0091  Score=37.86  Aligned_cols=13  Identities=23%  Similarity=0.329  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACR   65 (122)
Q Consensus        53 y~dAa~~ye~Aw~   65 (122)
                      |++|..+|++|.+
T Consensus        62 ~~~A~~~~~~al~   74 (78)
T PF13424_consen   62 YEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            4444444444443

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.36  E-value=0.013  Score=51.23  Aligned_cols=57  Identities=14%  Similarity=0.014  Sum_probs=47.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      .+...|++++|...++ ++..||+ ..+|.++         +++|+..|++|..+ +|.+|.  |-|.-|+
T Consensus       429 ~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-~P~~pt--~~~~~~~  495 (517)
T PRK10153        429 QALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL-RPGENT--LYWIENL  495 (517)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCch--HHHHHhc
Confidence            6667799999999999 9999997 6677754         99999999999999 799985  5444443

>KOG0495|consensus

Probab=96.34  E-value=0.019  Score=52.50  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=74.6

Q ss_pred             CCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHH
Q psy16144         26 PWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVS   95 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc   95 (122)
                      ++..++|..+|. ||+.-|.|.|.|..+         .+.|...|.+-.+.+ |+.+-....|+..=.|.|..+.|-.+.
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~il  742 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSIL  742 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHH
Confidence            488999999999 999999999998755         778889999999995 999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHH
Q psy16144         96 QTIMKAHPSYPKVHK  110 (122)
Q Consensus        96 ~kVL~~~P~ypkir~  110 (122)
                      .+..-.||+++-.+-
T Consensus       743 drarlkNPk~~~lwl  757 (913)
T KOG0495|consen  743 DRARLKNPKNALLWL  757 (913)
T ss_pred             HHHHhcCCCcchhHH
Confidence            999999999887654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.059  Score=44.69  Aligned_cols=55  Identities=15%  Similarity=0.235  Sum_probs=47.5

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q psy16144         59 QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY--PKVHKQIFE  114 (122)
Q Consensus        59 ~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y--pkir~~il~  114 (122)
                      -+++.|.- +|+|+.+.+.||..|.-.||+++|.+..-.+|+.+-++  ..+|+.+|+
T Consensus       224 ~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle  280 (304)
T COG3118         224 DLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE  280 (304)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence            34555666 89999999999999999999999999999999998744  778888776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.19  E-value=0.021  Score=50.46  Aligned_cols=82  Identities=15%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhh--CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQY--ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~--nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      -|+.+  .|.+.|++++|.++|+ ..+.  .|+ ...|.-+         +++|...++...+..-+.|..++..|...|
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y  370 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY  370 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence            46666  8888899999999888 6543  233 2233311         778888888888776577777788888888


Q ss_pred             HhcccHHHHHHHHHHHH
Q psy16144         83 LRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL   99 (122)
                      .|.|+.++|..++++..
T Consensus       371 ~k~G~~~~A~~vf~~m~  387 (697)
T PLN03081        371 SKWGRMEDARNVFDRMP  387 (697)
T ss_pred             HHCCCHHHHHHHHHhCC
Confidence            88888888888777664

>KOG4648|consensus

Probab=96.13  E-value=0.0055  Score=52.61  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|+.||-++..+ .|.||....+=|..|+|.++|..|..=|..++.++--|.|+
T Consensus       113 y~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA  167 (536)
T KOG4648|consen  113 YEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA  167 (536)
T ss_pred             hhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence            78888888888888 47777777777888888888887777777777776666555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.12  E-value=0.012  Score=47.72  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=78.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|-+.|-.+.|.--|. +|..+|.-+.+++|+         |+.|-..|...+++ +|+..-+..+=|-++--.|||.-|
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhccceeeeecCchHhh
Confidence            9999999999999999 999999999999977         99999999999999 799988888889999999999999


Q ss_pred             HHHHHHHHHhCCCCH
Q psy16144         92 IDVSQTIMKAHPSYP  106 (122)
Q Consensus        92 I~vc~kVL~~~P~yp  106 (122)
                      .+=..+--..+|+.|
T Consensus       153 q~d~~~fYQ~D~~DP  167 (297)
T COG4785         153 QDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHHHHHhcCCCCh
Confidence            998888888888777

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.06  E-value=0.029  Score=49.58  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=61.1

Q ss_pred             HhcCCCChHHHHHHHHHHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLRKKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI   92 (122)
                      +|.+.|++++|.++++-....|+ ...|.-+         ++.|...+++..++ .|+++....-|...|.+.|+.++|.
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhCCCHHHHH
Confidence            88888889988888882234454 4455533         78888888998888 6888888889999999999999999


Q ss_pred             HHHHHHHHh
Q psy16144         93 DVSQTIMKA  101 (122)
Q Consensus        93 ~vc~kVL~~  101 (122)
                      .+.+..-+.
T Consensus       549 ~v~~~m~~~  557 (697)
T PLN03081        549 KVVETLKRK  557 (697)
T ss_pred             HHHHHHHHc
Confidence            988876644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.05  E-value=0.011  Score=48.12  Aligned_cols=52  Identities=15%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      ++.|+..|.+|+++ .|....-.|+||+.-.|+|++..|..-|++||+++|+.
T Consensus        11 ~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976          11 AEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            67899999999999 69999999999999999999999999999999999965

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.03  E-value=0.068  Score=42.40  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             HhcCC-CChHHHHHHHH-HHhhCcchHHHHh-------------hC--HHHHHHHHHHHHHhhCCCC---hHH---HHHH
Q psy16144         22 LYLLP-WRWEPLSAGLR-KKQYISSATNIYN-------------LF--PDDAVVQYTQACRIIGTSD---LAL---HQKL   78 (122)
Q Consensus        22 Lyi~~-gk~d~A~elL~-~l~~nps~~kA~e-------------~l--y~dAa~~ye~Aw~l~~~~~---~~v---gykL   78 (122)
                      +|-+. |++++|.++++ ++.+-........             .+  |++|+..|++.....-.++   .++   .++.
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            88888 99999999999 8876443222221             11  9999999999998642222   223   3567


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .-+++..|+++.|-..+.+....+|.+..-|
T Consensus       203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~  233 (282)
T PF14938_consen  203 ILCHLAMGDYVAARKALERYCSQDPSFASSR  233 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            7799999999999999999999999875543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.053  Score=45.98  Aligned_cols=83  Identities=11%  Similarity=0.021  Sum_probs=73.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD-LALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~-~~vgykLA~~ylk~kr~~~   90 (122)
                      .+....++|.|.++++ +++-||.|.+|=-.+         |..|+..|+...+- ||+. +.|+-.|.-+|...|+.++
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHH
Confidence            5667789999999999 999999999987644         99999999999998 6665 6789999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q psy16144         91 AIDVSQTIMKAHPSY  105 (122)
Q Consensus        91 AI~vc~kVL~~~P~y  105 (122)
                      .+.-.++..+.+|.-
T Consensus       268 ~~~fL~~~~~~~~g~  282 (389)
T COG2956         268 GLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHccCCc
Confidence            999999988888743

>PLN03077 Protein ECB2; Provisional

Probab=95.98  E-value=0.047  Score=49.27  Aligned_cols=82  Identities=17%  Similarity=0.052  Sum_probs=55.5

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhC--cchHHHHhh------C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYI--SSATNIYNL------F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~n--ps~~kA~e~------l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      |..+  .|.+.|++++|.++|+ ..+.+  |+..-.-..      .  +++|...++.+.+.+-..+..++..|-..|.|
T Consensus       357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k  436 (857)
T PLN03077        357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK  436 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            5555  6777777777777777 54433  332111111      1  67777777777777666677788888888999


Q ss_pred             cccHHHHHHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIM   99 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL   99 (122)
                      .|++++|.+++++..
T Consensus       437 ~g~~~~A~~vf~~m~  451 (857)
T PLN03077        437 CKCIDKALEVFHNIP  451 (857)
T ss_pred             cCCHHHHHHHHHhCC
Confidence            999888888888764

>KOG4642|consensus

Probab=95.96  E-value=0.014  Score=47.64  Aligned_cols=72  Identities=19%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             CChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHH
Q psy16144         27 WRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQ   96 (122)
Q Consensus        27 gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~   96 (122)
                      .+|+.|...+- ++..||..+.+|-     ++    ++....-=.+|.++ .|+.....|-||...+..+.|.+||.+..
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            67888888888 8888888655443     33    77777777888888 58888888888888888888888888888


Q ss_pred             HHH
Q psy16144         97 TIM   99 (122)
Q Consensus        97 kVL   99 (122)
                      +++
T Consensus       103 ra~  105 (284)
T KOG4642|consen  103 RAY  105 (284)
T ss_pred             HHH
Confidence            873

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.95  E-value=0.08  Score=50.10  Aligned_cols=78  Identities=12%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhh--CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY--ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~--nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      .|.+.|++++|.++++ ..+.  .|+ ...|.-+         +++|...++...+..-+-+..+...|...|.+.|+++
T Consensus       623 ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence            6667777777777777 5544  333 2233311         7777777777777655566777777777777777777


Q ss_pred             HHHHHHHHHHH
Q psy16144         90 EAIDVSQTIMK  100 (122)
Q Consensus        90 ~AI~vc~kVL~  100 (122)
                      +|+.++++..+
T Consensus       702 eA~~lf~eM~~  712 (1060)
T PLN03218        702 KALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.94  E-value=0.056  Score=46.30  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH--HHHhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT--NIYNLF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~--kA~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      =+++-|..|+|.+.++ .++++-+..  ..+..+    +.+=.+.-|+..+. .|++|...+.||..|+|.|.+.+|-+.
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~  350 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEA  350 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence            3566777788887777 777655422  111111    44444445555555 566666666666666666666666666


Q ss_pred             HHHHHHhCCC
Q psy16144         95 SQTIMKAHPS  104 (122)
Q Consensus        95 c~kVL~~~P~  104 (122)
                      .+.+++.-|+
T Consensus       351 leaAl~~~~s  360 (400)
T COG3071         351 LEAALKLRPS  360 (400)
T ss_pred             HHHHHhcCCC
Confidence            6666666553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.91  E-value=0.11  Score=45.63  Aligned_cols=92  Identities=9%  Similarity=0.065  Sum_probs=72.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc-----
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK-----   86 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k-----   86 (122)
                      |+..+|++++|.+.|. .-+...+-....|..         +++|...|+..++. ||+|..-...|..+..-..     
T Consensus        13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~~~~~   91 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQLSDE   91 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhcccccc
Confidence            8889999999999999 888788766666622         89999999999998 8998888888888874333     


Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         87 RYAEAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        87 r~~~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      ....-.++|.++-..+|...-+|.-.|+
T Consensus        92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~  119 (517)
T PF12569_consen   92 DVEKLLELYDELAEKYPRSDAPRRLPLD  119 (517)
T ss_pred             cHHHHHHHHHHHHHhCccccchhHhhcc
Confidence            4566688899998888876666655554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03077 Protein ECB2; Provisional

Probab=95.89  E-value=0.11  Score=46.86  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHh--hCcchHHHHhh-C--------HHHHHHHHHHHH-HhhCCCChHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQ--YISSATNIYNL-F--------PDDAVVQYTQAC-RIIGTSDLALHQKLASL   81 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~--~nps~~kA~e~-l--------y~dAa~~ye~Aw-~l~~~~~~~vgykLA~~   81 (122)
                      -|..+  -|.+.|+.++|.++|+ ..+  ..|+. ..|.. +        .++|...|+... +.+-.-+.....-|...
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~  634 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL  634 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            46666  8889999999999999 766  34542 22221 1        889999999887 44434455677889999


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      |.+.|++++|.++.++. ...|| +.++.-+|.-+
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac  667 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC  667 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence            99999999999988775 35664 66666666544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.86  E-value=0.17  Score=33.60  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc-hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS-ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps-~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      .+...|.++.|...+. .++.++. ...++..+         +.+|...+..+... .|........++..+...+.+.+
T Consensus       176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  254 (291)
T COG0457         176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEE  254 (291)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh-CcccHHHHhhHHHHHHHcCCHHH
Confidence            4567789999999999 9999999 56666533         79999999999999 57778889999999998888999


Q ss_pred             HHHHHHHHHHhCCC
Q psy16144         91 AIDVSQTIMKAHPS  104 (122)
Q Consensus        91 AI~vc~kVL~~~P~  104 (122)
                      ++...++++..+|+
T Consensus       255 ~~~~~~~~~~~~~~  268 (291)
T COG0457         255 ALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999999996

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.83  E-value=0.0099  Score=32.13  Aligned_cols=27  Identities=11%  Similarity=0.027  Sum_probs=23.5

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISS   44 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps   44 (122)
                      |+.+  +|.+.|++++|.+.++ +++.+|+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4445  9999999999999999 9999984

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.83  E-value=0.046  Score=42.51  Aligned_cols=56  Identities=18%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM----------KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~----------kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |+.|.+.|+.+... +|.|+...++=|..++..          +-+.|||.-++++|.++|++.++.
T Consensus         7 FE~ark~aea~y~~-nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl   72 (186)
T PF06552_consen    7 FEHARKKAEAAYAK-NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL   72 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             HHHHHHHHHHHHHh-CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            88999999999999 899999999999998876          446789999999999999998764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471|consensus

Probab=95.81  E-value=0.038  Score=49.19  Aligned_cols=111  Identities=15%  Similarity=0.083  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHH---HhcCCCChHHHHHHHH--HHhhCcc--------hHHHHhhC---------HHHHHHHHHHHHH-
Q psy16144          9 MQIIQTIAEWHFL---LYLLPWRWEPLSAGLR--KKQYISS--------ATNIYNLF---------PDDAVVQYTQACR-   65 (122)
Q Consensus         9 ~~~~~~~~~~~~L---Lyi~~gk~d~A~elL~--~l~~nps--------~~kA~e~l---------y~dAa~~ye~Aw~-   65 (122)
                      |-|-|.-++.-+|   ++--.|.|.+|.++|-  -++-.|.        .+.+|.-+         |.-++..|.+|+. 
T Consensus       233 mn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N  312 (696)
T KOG2471|consen  233 MNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN  312 (696)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence            4444545556666   5555699999999987  4444444        44555533         9999999999996 


Q ss_pred             ----------------hhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         66 ----------------IIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        66 ----------------l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                                      ++.-+.-.+.|++|-.|+-.||.-.|-.++.+...++-.+|++|-+.-|-|...
T Consensus       313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                            122245678999999999999999999999999999999999999887776554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.77  E-value=0.28  Score=38.25  Aligned_cols=65  Identities=17%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         53 PDDAVVQYTQACRIIGT-----SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~-----~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      +..|...|++|.+....     +...+.|-+|-.+.+.|++++|+.-+.+|+ .+|+..+ ..-|+++||..
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi-~~~~~s~-~~~l~~~AR~~  210 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI-GSKKASK-EPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cCCCCCC-cHHHHHHHHHH
Confidence            89999999999987532     346889999999999999999999999999 6775555 45688888753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.70  E-value=0.082  Score=45.29  Aligned_cols=75  Identities=17%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      ++.++...=++.++ .++.-|..+..+..+         |.+|..+++.|+++  ..+.+-+--||.+|.+.|+.++|.+
T Consensus       305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHH
Confidence            47788888888999 999999999877744         99999999999999  3457888899999999999999999


Q ss_pred             HHHHHHH
Q psy16144         94 VSQTIMK  100 (122)
Q Consensus        94 vc~kVL~  100 (122)
                      +.+++|.
T Consensus       383 ~r~e~L~  389 (400)
T COG3071         383 VRREALL  389 (400)
T ss_pred             HHHHHHH
Confidence            9999984

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.69  E-value=0.43  Score=33.57  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                      |++|...++++... +|-|..+...|-..|...|++.+|+.+|++.
T Consensus        78 ~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   78 YEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            88888888888888 7888888888888888888888888888765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.64  E-value=0.034  Score=30.72  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      .+..+||..|...|++.+|+.+++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45678999999999999999999999965

>KOG2003|consensus

Probab=95.63  E-value=0.11  Score=46.28  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=74.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ||-|.|+-.+|-++-- .-+|.|++....|.+         .+.|+.+||+|--+ .|+-.---.-.|.++-+.|.|..|
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali-qp~~~kwqlmiasc~rrsgnyqka  679 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI-QPNQSKWQLMIASCFRRSGNYQKA  679 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHhcccHHHH
Confidence            8899999999988777 888999988777633         88999999999888 588777778889999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      .++|+.+.+..|....-
T Consensus       680 ~d~yk~~hrkfpedldc  696 (840)
T KOG2003|consen  680 FDLYKDIHRKFPEDLDC  696 (840)
T ss_pred             HHHHHHHHHhCccchHH
Confidence            99999999999987543

>KOG1127|consensus

Probab=95.60  E-value=0.039  Score=52.21  Aligned_cols=91  Identities=16%  Similarity=0.094  Sum_probs=58.2

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .|+..  .|...+.+-.|+.-|+ +++.+|.+...|+-+         |.-|.+.|.+|-.+ +|.+--+-|+-|-.-.-
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-rP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-RPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-CcHhHHHHHHHHHHHHH
Confidence            35555  5666666666666666 666666666666633         66666666666666 56666666666666666


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .|+|.+|.+.+..++....++.-.
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~  666 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTG  666 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666666555544433

>KOG2396|consensus

Probab=95.51  E-value=0.13  Score=45.62  Aligned_cols=80  Identities=11%  Similarity=0.100  Sum_probs=66.6

Q ss_pred             HHHHH-HHhhCcchHHHHh-hC--------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHHHh
Q psy16144         33 SAGLR-KKQYISSATNIYN-LF--------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR-YAEAIDVSQTIMKA  101 (122)
Q Consensus        33 ~elL~-~l~~nps~~kA~e-~l--------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr-~~~AI~vc~kVL~~  101 (122)
                      ..+.+ ++..-+.+.+-|. |+        |.+=...|.+++.+ +|++|.++.-=|+-..-.+. ..-|-++..+.|+.
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34666 7777777788887 22        78888999999999 89999999988877777776 77788999999999


Q ss_pred             CCCCHHHHHHHH
Q psy16144        102 HPSYPKVHKQIF  113 (122)
Q Consensus       102 ~P~ypkir~~il  113 (122)
                      ||+.|+++++-+
T Consensus       170 npdsp~Lw~eyf  181 (568)
T KOG2396|consen  170 NPDSPKLWKEYF  181 (568)
T ss_pred             CCCChHHHHHHH
Confidence            999999998754

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.51  E-value=0.14  Score=48.47  Aligned_cols=79  Identities=9%  Similarity=-0.104  Sum_probs=44.4

Q ss_pred             HhcCCCChHHHHHHHH-HHh----hCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQ----YISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~----~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      .|.+.|++++|.+++. ..+    ..|+ ...|..+         +++|...|+...+..-+.++.+...|...|.+.|+
T Consensus       551 a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~  629 (1060)
T PLN03218        551 ACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD  629 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence            5555666666666666 433    1333 2222211         66666666666666444555666666666666666


Q ss_pred             HHHHHHHHHHHHHh
Q psy16144         88 YAEAIDVSQTIMKA  101 (122)
Q Consensus        88 ~~~AI~vc~kVL~~  101 (122)
                      +++|+.++++..+.
T Consensus       630 ~deAl~lf~eM~~~  643 (1060)
T PLN03218        630 WDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHHHc
Confidence            66666666666554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.46  E-value=0.065  Score=38.48  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHhhC-----------------------HHHHHHHHHHHHHhhCCCChHHHHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYNLF-----------------------PDDAVVQYTQACRIIGTSDLALHQKL   78 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e~l-----------------------y~dAa~~ye~Aw~l~~~~~~~vgykL   78 (122)
                      +.+.|.+-+|.++++ .+..+++...+|...                       ...|+.+|.++..++ |..+...|.|
T Consensus         6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls-p~~A~~L~~l   84 (111)
T PF04781_consen    6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS-PDSAHSLFEL   84 (111)
T ss_pred             HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC-hhHHHHHHHH
Confidence            456799999999999 777777766555411                       678899999999995 8889999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHh
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      |..+--..-|.+|..-|++.|..
T Consensus        85 a~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   85 ASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcc
Confidence            99998899999999999999864

>KOG4234|consensus

Probab=95.44  E-value=0.058  Score=43.43  Aligned_cols=56  Identities=18%  Similarity=0.386  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChH---HH-HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLA---LH-QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~---vg-ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |.+|...|..|++.+-+.+..   |. -+=|.+++|.++.+.||+-|-+++.++|.|-|+
T Consensus       111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            999999999999997443332   22 245889999999999999999999999999886

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.42  E-value=0.14  Score=38.15  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=72.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--------hC----HHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--------LF----PDDAVVQYTQACRIIGTSDLAL---HQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--------~l----y~dAa~~ye~Aw~l~~~~~~~v---gykLA~~ylk~   85 (122)
                      -.++.|+|++|++.|+ +...-|....+-.        |.    |.+|+..|++-.++ +|++|.|   .|.-|..++..
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCCccHHHHHHHHHHHHH
Confidence            4568899999999999 8888887554433        11    99999999999999 8999876   56778888888


Q ss_pred             cc---------------HHHHHHHHHHHHHhCCCCHHHH
Q psy16144         86 KR---------------YAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 kr---------------~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      ..               ..+|..-++++++.+|+++-+.
T Consensus        98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             hhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            77               8899999999999999987553

>KOG4555|consensus

Probab=95.42  E-value=0.84  Score=34.69  Aligned_cols=100  Identities=11%  Similarity=0.006  Sum_probs=74.4

Q ss_pred             cccchhHHHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHh------hC---HHHHHHHHHHHHHhhCC
Q psy16144          2 KSLSVDTMQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYN------LF---PDDAVVQYTQACRIIGT   69 (122)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e------~l---y~dAa~~ye~Aw~l~~~   69 (122)
                      ++=+.||-+|-+..+ +-.-  .....|+.|.|.|.|. ++..-|..+-+|.      .+   ..+|..-+++|++++++
T Consensus        31 ede~~~~~~~e~S~~-LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   31 KDEEPDTQAIKASRE-LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             cccCCchHHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            344567776665543 2222  5678899999999999 9999999888887      22   89999999999999887


Q ss_pred             CChH---HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         70 SDLA---LHQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        70 ~~~~---vgykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      .--+   +..-=|..|-+.|+-++|-.=++.+-..-
T Consensus       110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            7443   34455788999999888877776544433

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=95.33  E-value=0.18  Score=40.20  Aligned_cols=96  Identities=14%  Similarity=0.000  Sum_probs=63.4

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHhhC--------------------------HHHHHHHHHHHHHhhCCCChHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYNLF--------------------------PDDAVVQYTQACRIIGTSDLALH   75 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e~l--------------------------y~dAa~~ye~Aw~l~~~~~~~vg   75 (122)
                      .+..|+|+.|.+..+ ++++|-..|.-|..-                          +-........-|.+ +..-.+=.
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dm-pd~vrAKl  171 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDM-PDEVRAKL  171 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCC-ChHHHHHH
Confidence            457899999999999 999998888776622                          22222222233444 12112225


Q ss_pred             HHHHHHHH----------hcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q psy16144         76 QKLASLLL----------RMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLR  121 (122)
Q Consensus        76 ykLA~~yl----------k~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~lr  121 (122)
                      ||.+-..+          ..++...|++.+++++..|| ..-++++| ++....||
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i-~~l~~~lr  225 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDI-ERLERRLK  225 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHH-HHHHHHHh
Confidence            56555444          45688899999999999998 66677766 55555554

>KOG1129|consensus

Probab=95.19  E-value=0.061  Score=46.02  Aligned_cols=89  Identities=11%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|-..+.+++|.++.+ +++..|.+..|.-     |.    ++=|..+|++.+.+ +-.+|....++|-+-+-.++++-+
T Consensus       299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCCChHHHhhHHHHHHhhcchhhh
Confidence            5666788999999999 9999998776654     11    77788888888888 467788888888888888888887


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..++++|..-- +|....||
T Consensus       378 L~sf~RAlstat-~~~~aaDv  397 (478)
T KOG1129|consen  378 LPSFQRALSTAT-QPGQAADV  397 (478)
T ss_pred             HHHHHHHHhhcc-Ccchhhhh
Confidence            777777775443 44444444

>KOG1156|consensus

Probab=95.18  E-value=0.17  Score=45.86  Aligned_cols=85  Identities=15%  Similarity=0.145  Sum_probs=75.9

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      -||.+  ++-...+|++|.+..+ +++..|++...|.-+         |+-.+..-.+.|++ .|+..+-.+.+|.++-.
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L  155 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHL  155 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Confidence            49999  6777788999999999 999999999988833         89999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhC
Q psy16144         85 MKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~  102 (122)
                      .|.|..|+.+-...-+..
T Consensus       156 ~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  156 LGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999887766655

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.15  E-value=0.38  Score=39.29  Aligned_cols=83  Identities=6%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             HH-HHhhCcchHHHHhhC---------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         36 LR-KKQYISSATNIYNLF---------------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        36 L~-~l~~nps~~kA~e~l---------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      |. .++-||++..+|..+                     .+--...|++|++. +|++......+=....+.-.-.+...
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45 788899999999844                     23455689999999 89999888887777778888888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         94 VSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        94 vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      -.+++|..||+++.++..-|+-.+..
T Consensus        87 ~we~~l~~~~~~~~LW~~yL~~~q~~  112 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYLDFRQSN  112 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            99999999999999999988876553

>KOG4642|consensus

Probab=95.13  E-value=0.062  Score=43.93  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |.+|+.+|-+|+.. +|+.++-..+=|-+|+|.++++.+..=|+++|...||-.+..
T Consensus        26 y~~ai~~y~raI~~-nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h   81 (284)
T KOG4642|consen   26 YDDAIDCYSRAICI-NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAH   81 (284)
T ss_pred             hchHHHHHHHHHhc-CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHH
Confidence            89999999999999 799999999999999999999999999999999999877653

>KOG4507|consensus

Probab=95.04  E-value=0.18  Score=46.00  Aligned_cols=99  Identities=16%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             Hhc-CCCChHHHHHHHH-HHhhCcchHHH------Hh----hCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYL-LPWRWEPLSAGLR-KKQYISSATNI------YN----LFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi-~~gk~d~A~elL~-~l~~nps~~kA------~e----~ly~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      ||- -+|..-.|...|. ++-..|.....      --    -|.-||-..+.+++.+ +-+-|-..|.+|..|+..++..
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-NSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-cccCchHHHhcchhHHHHhhhH
Confidence            444 3588889999998 88877763221      11    1288999999999999 6888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLR  121 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~il~ka~~~lr  121 (122)
                      .||+.++++++.+|+.|-+..+.+--++.+..
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~~~  725 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIRCMQFY  725 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHhhhh
Confidence            99999999999999999999998877765543

>KOG0545|consensus

Probab=94.90  E-value=0.1  Score=43.07  Aligned_cols=56  Identities=21%  Similarity=0.313  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHH-------hhCCCChH----------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACR-------IIGTSDLA----------LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~-------l~~~~~~~----------vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|+..|+.|+.       -.+|.+|.          ...+.+.++++.|.|-++++.|-.||..+|++.|+
T Consensus       194 ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA  266 (329)
T KOG0545|consen  194 YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA  266 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence            7777777776643       23444443          46778899999999999999999999999999876

>KOG4648|consensus

Probab=94.83  E-value=0.13  Score=44.31  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             cchhHH--HHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH-----HHhhC----HHHHHHHHHHHHHhhCC
Q psy16144          4 LSVDTM--QIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN-----IYNLF----PDDAVVQYTQACRIIGT   69 (122)
Q Consensus         4 ~~~~~~--~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k-----A~e~l----y~dAa~~ye~Aw~l~~~   69 (122)
                      |+||..  +++..-.|+---  -|..+|||++|.+... .+...|-++-     |.-|+    |.-|..--+.|+.+ +.
T Consensus        84 L~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~  162 (536)
T KOG4648|consen   84 LPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DK  162 (536)
T ss_pred             CCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hH
Confidence            555542  333333442222  7899999999999999 8888774332     22233    66666655666665 34


Q ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         70 SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        70 ~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .-.-+.-+=|..-.-.|+..+|-.=|+.||++.|+.-.+|+
T Consensus       163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK  203 (536)
T KOG4648|consen  163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK  203 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence            33333334444445567888999999999999999887775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.45  E-value=0.19  Score=40.96  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      |.+|...|..=.+. -|++   |.+.|=||-++...|+|.+|..++..+.+.+|++||.=.-.|
T Consensus       157 y~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         157 YAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             HHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            88999988888887 4665   678999999999999999999999999999999999843333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.27  E-value=0.34  Score=38.66  Aligned_cols=90  Identities=10%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             HHHHHH-HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL-LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L-Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ...+++ ..-+.+..+.|..+|. |++-++.+...|...          .+-|...||.+++.- |+++.+...-...+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            333444 4445555888889998 887666656555522          455889999999884 888888888888888


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      +.++...|-.++++++..-|...
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HhCcHHHHHHHHHHHHHhcCchh
Confidence            88998888888888887766444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.27  E-value=0.18  Score=29.03  Aligned_cols=33  Identities=18%  Similarity=0.104  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHH--HHHHHHhCCC
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDV--SQTIMKAHPS  104 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~v--c~kVL~~~P~  104 (122)
                      +...|.||+++-..|+|.+|+++  ++-....+|.
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            35678999999999999999999  4466666664

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2053|consensus

Probab=94.21  E-value=0.17  Score=47.31  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             cCCCChHHHHHHHH-HHhhCcc--hHHHHhhC-------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISS--ATNIYNLF-------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps--~~kA~e~l-------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      +.++.|..|...+. .++.-|+  |++++..+       ++||-.+.|-.-.. +++|....--|-++|-..+++++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            46788999999999 8888777  56666633       89998766655555 78888888899999999999999999


Q ss_pred             HHHHHHHhCCC
Q psy16144         94 VSQTIMKAHPS  104 (122)
Q Consensus        94 vc~kVL~~~P~  104 (122)
                      +|+++...+|+
T Consensus        99 ~Ye~~~~~~P~  109 (932)
T KOG2053|consen   99 LYERANQKYPS  109 (932)
T ss_pred             HHHHHHhhCCc
Confidence            99999999997

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.86  E-value=0.092  Score=27.60  Aligned_cols=26  Identities=23%  Similarity=0.068  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHH
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQT   97 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~k   97 (122)
                      |.+.+.||..+...|++++|..++++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            56788999999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2376|consensus

Probab=93.60  E-value=0.34  Score=43.71  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      .++|.+.++   .+ ++.++-..--=|..+-+.++|.+|.+||++..+-+-+.
T Consensus        95 ~Dealk~~~---~~-~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   95 LDEALKTLK---GL-DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHHHHHh---cc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            555555555   11 33333333333677777788888888888887666543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.58  E-value=0.74  Score=41.31  Aligned_cols=80  Identities=9%  Similarity=-0.066  Sum_probs=61.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-----HHh-----h--C--HHHHHHHHHHHHHhhCCCC-----hHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-----IYN-----L--F--PDDAVVQYTQACRIIGTSD-----LALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-----A~e-----~--l--y~dAa~~ye~Aw~l~~~~~-----~~vgykLA~~   81 (122)
                      ++...|++++|..+++ ++...+....     +..     +  .  +++|...+++|........     ..+...||..
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            7788999999999999 9886554221     111     1  1  9999999999998743221     2355788999


Q ss_pred             HHhcccHHHHHHHHHHHHHh
Q psy16144         82 LLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~  101 (122)
                      +...|++.+|.+.++++++.
T Consensus       541 ~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999875

>KOG2376|consensus

Probab=93.47  E-value=0.5  Score=42.68  Aligned_cols=53  Identities=25%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhh-----CCCC---------hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRII-----GTSD---------LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~-----~~~~---------~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      |.+|...+++|.+++     +.+.         ..+..-|||+|...|+-.+|-.+|..+++.+|..
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            888888888884332     2222         2356778999999999999999999988888843

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.29  E-value=0.13  Score=44.13  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             HhcCCCChHHHHHHHHHHhhCcchHHHHhhCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~~l~~nps~~kA~e~ly~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL   99 (122)
                      +++-.|+|..|.+.+.-+..|+.-             .|   |+- -+...++.|-+||+||-.+||.|||.++..+|
T Consensus       131 vh~LLGDY~~Alk~l~~idl~~~~-------------l~---~~V-~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  131 VHCLLGDYYQALKVLENIDLNKKG-------------LY---TKV-PACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHhccCHHHHHHHhhccCcccch-------------hh---ccC-cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788889999999988844545431             11   333 36678899999999999999999999999887

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.20  E-value=0.078  Score=29.68  Aligned_cols=23  Identities=9%  Similarity=-0.003  Sum_probs=17.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS   44 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps   44 (122)
                      +|.+.|+|++|+++++ +|...++
T Consensus         8 ~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    8 IYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhccc
Confidence            8888899999998888 7765544

>KOG1585|consensus

Probab=93.07  E-value=1.1  Score=37.02  Aligned_cols=88  Identities=15%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             HhcCCCChHHHHHHHH-HH---hhCcc---hHHHHh---hC------HHHHHHHHHHHHH----hhCCCChHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KK---QYISS---ATNIYN---LF------PDDAVVQYTQACR----IIGTSDLALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l---~~nps---~~kA~e---~l------y~dAa~~ye~Aw~----l~~~~~~~vgykLA~~   81 (122)
                      -|-.+++|++|...|. +.   +.|+|   -.|++|   .|      +.|++..|++|..    .+.|+-.+....-|.-
T Consensus        40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak  119 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK  119 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence            4557788999999888 76   45666   456677   22      8999999999965    4556666677777888


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .++..+.++|+.+|++.+.+-...-+.+
T Consensus       120 ~lenv~Pd~AlqlYqralavve~~dr~~  147 (308)
T KOG1585|consen  120 ALENVKPDDALQLYQRALAVVEEDDRDQ  147 (308)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHhccchHH
Confidence            8999999999999999998766554444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=92.98  E-value=0.89  Score=36.38  Aligned_cols=92  Identities=21%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcc--hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISS--ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps--~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      .+..+++.+|...|. ..++||.  .+.....+         |.||...||.|..+ -| .|..-...+--+.++||..+
T Consensus       134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-yp-g~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY-YP-GPQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-CC-CHHHHHHHHHHHHHhcchhH
Confidence            445688889999999 9998886  23333222         89999999999988 35 46777777888999998776


Q ss_pred             HH----HHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         91 AI----DVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        91 AI----~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      |-    ++...+.+.+|-|.|=.++-++-|
T Consensus       212 a~aq~~~v~d~~~r~~~H~rkh~reW~~~A  241 (251)
T COG4700         212 ANAQYVAVVDTAKRSRPHYRKHHREWIKTA  241 (251)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            54    556667778888888777777776

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.95  E-value=0.19  Score=30.29  Aligned_cols=29  Identities=14%  Similarity=0.231  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      -+.||..|..+|+++.|.++.++|+. .++
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~   30 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE-EGD   30 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH-cCC
Confidence            37899999999999999999999994 554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0550|consensus

Probab=92.82  E-value=0.4  Score=41.84  Aligned_cols=87  Identities=11%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--hC-----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--LF-----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--~l-----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      -..+.|+|..|.|... +|..+|++.+-.-  |+           .+||+.--+.|.++ ++.-..+...=|.+++-.++
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHH
Confidence            3456688888888888 8888888554332  22           78888888888888 67777777777888888888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +++|.+=+++++...-+ +.+|.
T Consensus       337 ~e~AV~d~~~a~q~~~s-~e~r~  358 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQLEKD-CEIRR  358 (486)
T ss_pred             HHHHHHHHHHHHhhccc-cchHH
Confidence            88888888888877666 66664

>KOG3824|consensus

Probab=92.72  E-value=0.21  Score=42.60  Aligned_cols=55  Identities=9%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      -+.|.+.|+.|+.+ .|++|.+..+.|....-.+..++|=.+|-++|...|.+-++
T Consensus       132 ~ekA~~lfeHAlal-aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  132 LEKAMTLFEHALAL-APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             hHHHHHHHHHHHhc-CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            67788888888888 68888888888888888888888888888888888877654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.58  E-value=0.67  Score=31.11  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      .+...+|..+...|.+.+|+..+++++++-.
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999987654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.49  E-value=0.58  Score=32.86  Aligned_cols=85  Identities=14%  Similarity=0.008  Sum_probs=57.0

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHh-h-C-HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYN-L-F-PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e-~-l-y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                      ..+.|..+.+.+.++ ++..-.+..-.-. . - .......++..+       ..+.-+|+..+...|++.+|+..|++.
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELY-------LDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            345678889999999 8887766432221 1 1 333333344332       467888999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHH
Q psy16144         99 MKAHPSYPKVHKQIFE  114 (122)
Q Consensus        99 L~~~P~ypkir~~il~  114 (122)
                      +..+|.+-.+....|.
T Consensus        89 l~~dP~~E~~~~~lm~  104 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMR  104 (146)
T ss_dssp             HHHSTT-HHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHH
Confidence            9999999888765543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=92.39  E-value=0.12  Score=25.02  Aligned_cols=23  Identities=9%  Similarity=-0.026  Sum_probs=19.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS   44 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps   44 (122)
                      +|...|++++|...++ +++.+|+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028       10 AYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHhhHHHHHHHHHHHHccCCC
Confidence            7777899999999999 8888876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0551|consensus

Probab=92.37  E-value=0.67  Score=39.53  Aligned_cols=55  Identities=25%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHH----HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALH----QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vg----ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|..+|-+.++- +-.||.+-    .+=|.+-+-.|+|.-||.=|.++|..+|+|.|.
T Consensus        97 yk~A~~~Yt~Glk~-kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   97 YKDAVESYTEGLKK-KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             HHHHHHHHHHHHhh-cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            66666666666655 34444432    233445555666666666666666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.30  E-value=0.91  Score=38.66  Aligned_cols=76  Identities=18%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             HhcC---CCChHHHHHHHH-HHhh-CcchHHHHhhC------------------HHHHHHHHHHHHHhhCCCChHHHHHH
Q psy16144         22 LYLL---PWRWEPLSAGLR-KKQY-ISSATNIYNLF------------------PDDAVVQYTQACRIIGTSDLALHQKL   78 (122)
Q Consensus        22 Lyi~---~gk~d~A~elL~-~l~~-nps~~kA~e~l------------------y~dAa~~ye~Aw~l~~~~~~~vgykL   78 (122)
                      -..+   .|+.+.|.+.+. ++.- .+..+..+-..                  .+.|+..|.++|+. + .+--.|-++
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-~-~~~Y~GIN~  265 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-E-PDYYSGINA  265 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-C-ccccchHHH
Confidence            4456   899999999998 5443 33344443311                  88899999999999 4 578999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL   99 (122)
                      |..+...|.-.+...-.++|-
T Consensus       266 AtLL~~~g~~~~~~~el~~i~  286 (374)
T PF13281_consen  266 ATLLMLAGHDFETSEELRKIG  286 (374)
T ss_pred             HHHHHHcCCcccchHHHHHHH
Confidence            999999997555443344443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.28  E-value=0.7  Score=39.83  Aligned_cols=78  Identities=17%  Similarity=0.044  Sum_probs=49.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc-----hHHHHhhC--------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS-----ATNIYNLF--------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps-----~~kA~e~l--------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      ++...|+.++|.+.++ ++.-..+     ..-.||+.        |++|+.+|....+.++=+..-..|-.|-+|...++
T Consensus       276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence            6667777888888777 6632111     11122211        77787777777777655556667777777777777


Q ss_pred             H-------HHHHHHHHHHH
Q psy16144         88 Y-------AEAIDVSQTIM   99 (122)
Q Consensus        88 ~-------~~AI~vc~kVL   99 (122)
                      .       .+|.+..++|=
T Consensus       356 ~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  356 EEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             chhhhhhHHHHHHHHHHHH
Confidence            7       66666666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.25  E-value=0.88  Score=34.54  Aligned_cols=66  Identities=14%  Similarity=-0.071  Sum_probs=37.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHH-----HhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNI-----YNLF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY   88 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA-----~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~   88 (122)
                      +.++.++.++++.+|. .-...|+.+..     |..+    |.||...++..-+- .|.+|.+.=-||+++.-.|+.
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHcCCh
Confidence            5556667777777777 55555553322     2222    66666666665544 466666666666666555553

>KOG3364|consensus

Probab=91.65  E-value=0.94  Score=34.09  Aligned_cols=64  Identities=14%  Similarity=0.205  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHH-hhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q psy16144         53 PDDAVVQYTQACR-IIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH--KQIFEKA  116 (122)
Q Consensus        53 y~dAa~~ye~Aw~-l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir--~~il~ka  116 (122)
                      -++-+..+|...+ -...+.-.--|=||+.+-|.|+|..++..|+..|+..||++.++  ++-++++
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~  117 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDK  117 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            7788888888886 33344556788999999999999999999999999999998774  3444444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.43  E-value=0.35  Score=30.12  Aligned_cols=31  Identities=6%  Similarity=-0.223  Sum_probs=25.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF   52 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l   52 (122)
                      =+.+.|+|++|..+++ +|+..|++..|-++.
T Consensus        10 g~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen   10 GHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            5668899999999999 999999998877643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.36  E-value=0.15  Score=26.83  Aligned_cols=24  Identities=4%  Similarity=-0.036  Sum_probs=21.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA   45 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~   45 (122)
                      +|.+.|++++|.+.++ +++..|++
T Consensus         9 ~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    9 CYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHccCHHHHHHHHHHHHHHCcCC
Confidence            7778899999999999 99988874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.14  E-value=0.34  Score=26.48  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=19.1

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhh
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQY   41 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~   41 (122)
                      .-++.|  .|...|++++|.++++ ++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            344555  7888899999999999 7764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=91.13  E-value=1.2  Score=39.88  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHH----Hh-------hC----HHHHHHHHHHHHHhhCCCC----h---HHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNI----YN-------LF----PDDAVVQYTQACRIIGTSD----L---ALHQKL   78 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA----~e-------~l----y~dAa~~ye~Aw~l~~~~~----~---~vgykL   78 (122)
                      .+...|++++|...++ ++....+....    +-       ++    +++|...++++..+.....    +   .+...+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            6778899999999999 88764432111    11       11    9999999999998754321    2   234577


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      |..+...|++.+|.+.+++++...+
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            8888999999999999999987644

>KOG4340|consensus

Probab=91.01  E-value=0.65  Score=39.57  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |.||+.+...-.+- +|++.+..-.||++|-..++|..|.++|.+.=..+|.+.+-|
T Consensus        26 y~DaI~~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr   81 (459)
T KOG4340|consen   26 YADAIQLLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR   81 (459)
T ss_pred             HHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            89999999998888 688888888999999999999999999999999999776654

>KOG0551|consensus

Probab=90.81  E-value=0.84  Score=38.95  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=66.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--hC-----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--LF-----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--~l-----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      =|...+||..|++.+. -|+.+..+++.-.  |.           |+.|..=-.+|..+ +|++.-+-++=|-+++-.++
T Consensus        90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-~P~h~Ka~~R~Akc~~eLe~  168 (390)
T KOG0551|consen   90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-KPTHLKAYIRGAKCLLELER  168 (390)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhhhhhhHHHHHHHH
Confidence            5778899999999999 9988777655443  22           78888878889999 89999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy16144         88 YAEAIDVSQTIMKA  101 (122)
Q Consensus        88 ~~~AI~vc~kVL~~  101 (122)
                      +.+|...|+.-|.+
T Consensus       169 ~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  169 FAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHHHHhhhhhh
Confidence            99999999865543

>KOG1586|consensus

Probab=90.72  E-value=1.8  Score=35.58  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             HhcCCCChHHHHHHHHHHhhCcchHHHHh-hC--HHHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHHhcccHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLRKKQYISSATNIYN-LF--PDDAVVQYTQACRIIGTSDL-----ALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~~l~~nps~~kA~e-~l--y~dAa~~ye~Aw~l~~~~~~-----~vgykLA~~ylk~kr~~~AI~   93 (122)
                      ||...|+|..|-..-.      +-...|| -+  ++.|+.+||+|=++-...-.     --..|-|.---..++|.+||+
T Consensus       102 Iyt~~Grf~~aAk~~~------~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~  175 (288)
T KOG1586|consen  102 IYTDMGRFTMAAKHHI------EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAID  175 (288)
T ss_pred             HHHhhhHHHHHHhhhh------hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666544322      2234444 22  88999999999776322111     123455666667899999999


Q ss_pred             HHHHHHHhCCCCHHHH
Q psy16144         94 VSQTIMKAHPSYPKVH  109 (122)
Q Consensus        94 vc~kVL~~~P~ypkir  109 (122)
                      +|++|-+..-++|-.+
T Consensus       176 iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  176 IYEQVARSSLDNNLLK  191 (288)
T ss_pred             HHHHHHHHhccchHHH
Confidence            9999998887877654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.40  E-value=0.61  Score=38.08  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      ..=|..-|.+++.+ +|+-|+|..-||--|...|+|+.|.+.+.-|++.+|.|--.
T Consensus        81 ~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya  135 (297)
T COG4785          81 RALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  135 (297)
T ss_pred             HHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH
Confidence            55577778899999 79999999999999999999999999999999999987544

>KOG1941|consensus

Probab=90.18  E-value=0.53  Score=40.86  Aligned_cols=80  Identities=13%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------------HHHHHHHHHHHHHhhCCC---------ChHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------------PDDAVVQYTQACRIIGTS---------DLALHQ   76 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------------y~dAa~~ye~Aw~l~~~~---------~~~vgy   76 (122)
                      -++..|-|+.+.+.|+ ++++.-...++...+               |+.|..+-.+|.++.+-=         ...+.|
T Consensus       131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            3455677899999999 888776655554422               899999889998885321         135679


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHh
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      .+|..|-+.|+..||-+.|+++.++
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHH
Confidence            9999999999999999999988764

>PRK10941 hypothetical protein; Provisional

Probab=89.53  E-value=2  Score=34.74  Aligned_cols=55  Identities=9%  Similarity=-0.002  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      +..|..+-+..+.+ .|++|.--=.-|+.|...|.+..|.+=++.-+++.|+.|.+
T Consensus       197 ~~~AL~~~e~ll~l-~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        197 MELALRASEALLQF-DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            55555555555555 46666555555777777777777777777777777777765

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.44  E-value=1.2  Score=22.82  Aligned_cols=29  Identities=10%  Similarity=0.122  Sum_probs=23.5

Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      |....|-++|++.++..|.++.++..=++
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45678889999999999999999876543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=89.37  E-value=1.4  Score=35.34  Aligned_cols=50  Identities=16%  Similarity=0.060  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         53 PDDAVVQYTQACRIIGTSD--LALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~--~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      +.+|...+|...+. +|..  |.-..-+|..|--.|++++|..-++.+++-.|
T Consensus       140 ~A~a~~tLe~l~e~-~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         140 FAAAQQTLEDLMEY-NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHHHHhhc-CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            44444444444444 3322  23334444455555555555555555555444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.78  E-value=1.5  Score=35.66  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q psy16144         71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLR  121 (122)
Q Consensus        71 ~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~lr  121 (122)
                      .+...|+=|.--+..|++.+|++-++++..+||..|-.++-.|+-+.+.-|
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk   83 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK   83 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh
Confidence            577899999999999999999999999999999999998888888876543

>KOG3785|consensus

Probab=88.68  E-value=5.7  Score=34.70  Aligned_cols=24  Identities=13%  Similarity=0.032  Sum_probs=15.7

Q ss_pred             HHHHHHhcCCCChHHHHHHHH-HHh
Q psy16144         17 EWHFLLYLLPWRWEPLSAGLR-KKQ   40 (122)
Q Consensus        17 ~~~~LLyi~~gk~d~A~elL~-~l~   40 (122)
                      -|.-.-|...|+|++|.+..+ ..+
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~   85 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMN   85 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhc
Confidence            344445666788888888777 543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=87.96  E-value=2.6  Score=36.30  Aligned_cols=80  Identities=11%  Similarity=-0.026  Sum_probs=62.2

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcccHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL----ALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~----~vgykLA~~ylk~kr~~~   90 (122)
                      .....+.|+++|. ..+.-|+++-....-         .++|+..|++|++-. ..-+    -..|.||.+++-..++.+
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            4566889999999 999999855433311         999999999998632 3333    347999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q psy16144         91 AIDVSQTIMKAHPSY  105 (122)
Q Consensus        91 AI~vc~kVL~~~P~y  105 (122)
                      |.+.+.+.++.+.-.
T Consensus       324 A~~~f~~L~~~s~WS  338 (468)
T PF10300_consen  324 AAEYFLRLLKESKWS  338 (468)
T ss_pred             HHHHHHHHHhccccH
Confidence            999988888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.65  E-value=4  Score=32.14  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhcccHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTS---DLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~---~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ...|...|.+++++++++   ||.+...||..|.+.|+++.|
T Consensus       156 ~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  156 PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            789999999999999888   899999999999999999886

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=2.9  Score=34.87  Aligned_cols=50  Identities=22%  Similarity=0.143  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +.+|...+..||.. .|.+..+..-||-+|+..|+.++|.+    +|+.-|...+
T Consensus       150 ~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~----iL~~lP~~~~  199 (304)
T COG3118         150 FGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQA----ILAALPLQAQ  199 (304)
T ss_pred             hhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHH----HHHhCcccch
Confidence            88999999999999 58889999999999999999999766    6777775443

>KOG2796|consensus

Probab=87.42  E-value=2  Score=36.09  Aligned_cols=79  Identities=10%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh--------------hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN--------------LF----PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e--------------~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      +..|.|+-+-|..+++ +=+   +..+--+              ++    |.+|...|.+..+- ++.++.+-.+-|-++
T Consensus       221 ~~MQ~GD~k~a~~yf~~vek---~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcl  296 (366)
T KOG2796|consen  221 ISMQIGDIKTAEKYFQDVEK---VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCL  296 (366)
T ss_pred             HHHhcccHHHHHHHHHHHHH---HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-CCCchhhhchHHHHH
Confidence            6677777777777777 532   2222111              22    88888888888877 688888888888888


Q ss_pred             HhcccHHHHHHHHHHHHHhCCC
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      |-.|+..||+.+-..++.+.|.
T Consensus       297 lYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  297 LYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHhccCCc
Confidence            8888888888888888888884

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.09  E-value=2.6  Score=31.89  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=24.1

Q ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         68 GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        68 ~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .|+.+.+..=-|..++..|++.||+.+.+.+-..-|..|..
T Consensus        40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~   80 (153)
T TIGR02561        40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG   80 (153)
T ss_pred             CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence            45556666656666666666666666666666555555533

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2053|consensus

Probab=87.07  E-value=3.8  Score=38.63  Aligned_cols=83  Identities=17%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             HhcCCCChHHHHHHHHHHhh-CcchHHHHhh-------C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLRKKQY-ISSATNIYNL-------F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~~l~~-nps~~kA~e~-------l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ..++.||+|+|.++|+++.. -+.+-.-...       +  +++|...||+|..- .|+ ..-.+-|.-+|.+-+.|.+=
T Consensus        52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-~P~-eell~~lFmayvR~~~yk~q  129 (932)
T KOG2053|consen   52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-YPS-EELLYHLFMAYVREKSYKKQ  129 (932)
T ss_pred             HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-CCc-HHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999983332 2222332221       1  99999999999999 798 99999999999999999875


Q ss_pred             HHHHHHHHHhCCCCH
Q psy16144         92 IDVSQTIMKAHPSYP  106 (122)
Q Consensus        92 I~vc~kVL~~~P~yp  106 (122)
                      -.+--+.-+..|..|
T Consensus       130 Qkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  130 QKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHhCCccc
Confidence            544444455556554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.59  E-value=3.7  Score=31.40  Aligned_cols=56  Identities=18%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         56 AVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        56 Aa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |..+|.+|+.+ .|++-....-||-.+.-.|+..+|+=-|-+.|...--+|.++..+
T Consensus         1 A~~~Y~~A~~l-~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL   56 (278)
T PF10373_consen    1 AERYYRKAIRL-LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENL   56 (278)
T ss_dssp             HHHHHHHHHHH--TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred             CHHHHHHHHHh-CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            66788888888 588888888888888888888888766666665444457665543

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.47  E-value=5  Score=36.36  Aligned_cols=92  Identities=14%  Similarity=0.000  Sum_probs=70.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHH------HHHHHh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKL------ASLLLR   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykL------A~~ylk   84 (122)
                      ++...+..+.|.-.++ ++..||..+.++--+          ..-++..-+.|... .|+|..+-.-+      +...-.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (620)
T COG3914          76 LLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL-SPDNAEFLGHLIRFYQLGRYLKL  154 (620)
T ss_pred             hccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CcchHHHHhhHHHHHHHHHHHHH
Confidence            5667788888888888 999999988887743          44444444557777 48887765555      777778


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      .|+.+++..--+++.+..|.||++-..-+-
T Consensus       155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         155 LGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            888899999999999999999988655443

>KOG3785|consensus

Probab=86.46  E-value=3.6  Score=35.91  Aligned_cols=57  Identities=25%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEK  115 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~k  115 (122)
                      |+|-..+...--.+ --+|....|++|..++-.|.|++|++.+-+|-     .|+||.+|+.+
T Consensus       375 FddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-----~~~ikn~~~Y~  431 (557)
T KOG3785|consen  375 FDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-----GPEIKNKILYK  431 (557)
T ss_pred             HHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-----ChhhhhhHHHH
Confidence            67766655555555 47888899999999999999999999877664     67888888766

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.26  E-value=5.3  Score=33.43  Aligned_cols=92  Identities=11%  Similarity=-0.069  Sum_probs=63.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc-hHHHHhhC----------HHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS-ATNIYNLF----------PDDAVVQYTQACRIIGT----SDLALHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps-~~kA~e~l----------y~dAa~~ye~Aw~l~~~----~~~~vgykLA~~ylk~   85 (122)
                      ...+.|-+..|.|.+| .+..+|+ ++-+-.++          |+-=+..++........    .-|...|..|-++...
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l  191 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL  191 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence            7778899999999999 9999999 66555433          33333333322220001    1467888888888888


Q ss_pred             ccH---------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         86 KRY---------------AEAIDVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        86 kr~---------------~~AI~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      ++-               .+|-....+++..+|   .+-..++++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP---~vl~~Ll~~l  234 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRFP---WVLVPLLDKL  234 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHhH---HHHHHHHHHh
Confidence            887               888888899998876   4444566654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376|consensus

Probab=86.25  E-value=0.7  Score=40.57  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |+.|+..|-+|+++ +|+.....-+=|++++|.+.|-.|+.=+.++++.+|.|.|.
T Consensus        20 fd~avdlysKaI~l-dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~   74 (476)
T KOG0376|consen   20 FDVAVDLYSKAIEL-DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA   74 (476)
T ss_pred             HHHHHHHHHHHHhc-CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence            99999999999999 78776666666899999999999999999999999998775

>KOG3807|consensus

Probab=86.19  E-value=9.7  Score=33.13  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=63.8

Q ss_pred             CChHHHHHHHH-HHhhCcchHHHHhhC-------HHHHHHHHHHHHHhhC--------------------CCChH----H
Q psy16144         27 WRWEPLSAGLR-KKQYISSATNIYNLF-------PDDAVVQYTQACRIIG--------------------TSDLA----L   74 (122)
Q Consensus        27 gk~d~A~elL~-~l~~nps~~kA~e~l-------y~dAa~~ye~Aw~l~~--------------------~~~~~----v   74 (122)
                      ....+-.+.-+ +|+.||.|.-||-++       ..+|.+.+.+|++...                    .+|..    +
T Consensus       198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YI  277 (556)
T KOG3807|consen  198 RNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYI  277 (556)
T ss_pred             cCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHH
Confidence            33444445556 999999999999766       7778888888876531                    11111    2


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAHP--SYPKVHKQIFEK  115 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~P--~ypkir~~il~k  115 (122)
                      --+||-+--|.||..||+.+.|...+..|  .--.|+...+|-
T Consensus       278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa  320 (556)
T KOG3807|consen  278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA  320 (556)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence            45799999999999999999999999888  224455555553

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=86.13  E-value=1.1  Score=38.22  Aligned_cols=77  Identities=8%  Similarity=0.083  Sum_probs=61.4

Q ss_pred             HHHHHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         35 GLRKKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQK-LASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        35 lL~~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgyk-LA~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      ++|....-|++++.|...         |.+--..|-.++.. +|.|...+.- -+|-|.-.+++.-|-+++.+.|+.||+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            344455577788888722         66666777888888 8999888765 678888899999999999999999999


Q ss_pred             CHHHHHHH
Q psy16144        105 YPKVHKQI  112 (122)
Q Consensus       105 ypkir~~i  112 (122)
                      .|+||-+-
T Consensus       175 ~p~iw~ey  182 (435)
T COG5191         175 SPRIWIEY  182 (435)
T ss_pred             CchHHHHH
Confidence            99998764

>KOG1308|consensus

Probab=85.97  E-value=0.16  Score=43.21  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKL-ASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykL-A~~ylk~kr~~~   90 (122)
                      =..+.|.++.|++++. ++..||.....|-     ++    ...|+..|..|+++ +| |.+.||++ ++.--..|..++
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~-Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-NP-DSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-Cc-ccccccchhhHHHHHhhchHH
Confidence            4567899999999999 9999998766554     11    88999999999999 56 46777775 566677788888


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHH
Q psy16144         91 AIDVSQTIMKAH--PSYPKVHKQIFEKA  116 (122)
Q Consensus        91 AI~vc~kVL~~~--P~ypkir~~il~ka  116 (122)
                      |-.-.+.+++.+  |..-...++|-..|
T Consensus       201 aa~dl~~a~kld~dE~~~a~lKeV~p~a  228 (377)
T KOG1308|consen  201 AAHDLALACKLDYDEANSATLKEVFPNA  228 (377)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHhccch
Confidence            888888887664  34445555555444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.38  E-value=2  Score=37.96  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         74 LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        74 vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      +--+|.-+|+++++..-|+..-|+-.-.+|.|++=
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frn  264 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN  264 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence            45689999999999999999999999999999764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.23  E-value=2.6  Score=28.15  Aligned_cols=62  Identities=18%  Similarity=0.134  Sum_probs=44.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-------HHhhC-----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-------IYNLF-----------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-------A~e~l-----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      -.++.|+|.+|.+.|. ...+-+....       .+-.+           +++|...++.|.++..+.+...+...+-.+
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            6678999999988887 6655444221       11111           999999999999998888877777666554


Q ss_pred             H
Q psy16144         83 L   83 (122)
Q Consensus        83 l   83 (122)
                      +
T Consensus        87 ~   87 (94)
T PF12862_consen   87 L   87 (94)
T ss_pred             H
Confidence            3

>KOG1308|consensus

Probab=85.21  E-value=0.78  Score=39.09  Aligned_cols=61  Identities=23%  Similarity=0.263  Sum_probs=50.1

Q ss_pred             HHHHhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         46 TNIYNLF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        46 ~kA~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      .+|-|.+    ++.|+..|-.|.++ +|.+..+.-+=|.+++|.++...||.=|..++.++||..+
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK  183 (377)
T ss_pred             HHHHHHhcCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence            4455544    88888999999998 7888888888889999999999999889999988887654

>KOG3824|consensus

Probab=84.75  E-value=2.4  Score=36.33  Aligned_cols=66  Identities=11%  Similarity=-0.023  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHH
Q psy16144         10 QIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQK   77 (122)
Q Consensus        10 ~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgyk   77 (122)
                      .+...|.-+.+-  ++. .||-|.|..+|. +++..|.++.+.-.+         ..+|-.+|-+|+.++ |.|..+.-+
T Consensus       112 ~~kEA~~Al~~A~~~~~-~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis-P~nseALvn  189 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRK-DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS-PGNSEALVN  189 (472)
T ss_pred             hhHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-CCchHHHhh
Confidence            345556555555  554 599999999999 999999999998765         778999999999995 988887654

>KOG1070|consensus

Probab=84.46  E-value=11  Score=37.59  Aligned_cols=95  Identities=16%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             HHHHHHH-HhcCCCChHHHHHHHH-HHh-hCcch-------HHHHh-hC--HHH---HHHHHHHHHHhhCCCChHHHHHH
Q psy16144         15 IAEWHFL-LYLLPWRWEPLSAGLR-KKQ-YISSA-------TNIYN-LF--PDD---AVVQYTQACRIIGTSDLALHQKL   78 (122)
Q Consensus        15 ~~~~~~L-Lyi~~gk~d~A~elL~-~l~-~nps~-------~kA~e-~l--y~d---Aa~~ye~Aw~l~~~~~~~vgykL   78 (122)
                      |-++..+ -.++.+..+.|.+..+ +|. .|+.-       +-||. +-  |..   =-+.||+|+.+++|  -.|..+|
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~--~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA--YTVHLKL 1536 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch--HHHHHHH
Confidence            3344445 6788899999999998 664 44431       11222 11  552   23579999999744  8999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      .-.|.|..++.+|.++++.-++..-+.+++|..
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIM 1569 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHH
Confidence            999999999999999999999988877777743

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.76  E-value=6.4  Score=34.11  Aligned_cols=97  Identities=13%  Similarity=0.122  Sum_probs=59.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch--------HHHHh-------hC----------------HHHHHHHHHHHHHhhCC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA--------TNIYN-------LF----------------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~--------~kA~e-------~l----------------y~dAa~~ye~Aw~l~~~   69 (122)
                      =+.+.|||.+|.+.|+ .|..-|=.        .++.+       |+                .++.-++.|.|-=++..
T Consensus       213 k~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc  292 (422)
T PF06957_consen  213 KLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHC  292 (422)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcC
Confidence            4578899999999999 88764421        12222       22                34555677777666655


Q ss_pred             CChHHHHHHHH-----HHHhcccHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHh
Q psy16144         70 SDLALHQKLAS-----LLLRMKRYAEAIDVSQTIMKAHPSYPKV--HKQIFEKAMV  118 (122)
Q Consensus        70 ~~~~vgykLA~-----~ylk~kr~~~AI~vc~kVL~~~P~ypki--r~~il~ka~~  118 (122)
                      +--.++-.|+-     ...|.|+|.-|-..+++.|+++|.-+.+  -+.|+.+|.+
T Consensus       293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~  348 (422)
T PF06957_consen  293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER  348 (422)
T ss_dssp             ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            54445544443     2359999999999999999999966532  2246666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.67  E-value=8.6  Score=25.63  Aligned_cols=17  Identities=41%  Similarity=0.604  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHhCCCCHH
Q psy16144         91 AIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypk  107 (122)
                      ||++..++++..||.|+
T Consensus        32 aIe~L~q~~~~~pD~~~   48 (75)
T cd02682          32 AIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHhCCChHH
Confidence            33444455555555554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=83.60  E-value=5.6  Score=35.49  Aligned_cols=82  Identities=15%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             CCCChHHHHHHHH-HHhhCcc--hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH----
Q psy16144         25 LPWRWEPLSAGLR-KKQYISS--ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY----   88 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps--~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~----   88 (122)
                      +.|+.++|++.++ .++.+|.  ....+|-+         |.|+.....+==+.+-|++.++.|.=  +++|.+.-    
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa--ALLkaRav~d~f  348 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA--ALLKARAVGDKF  348 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH--HHHHHHhhcccc
Confidence            6799999999999 9988775  33344411         77777766664445456777777764  34443322    


Q ss_pred             --------------HHHHHHHHHHHHhCCCCHHH
Q psy16144         89 --------------AEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        89 --------------~~AI~vc~kVL~~~P~ypki  108 (122)
                                    ..|.+..|++.+.||--|+-
T Consensus       349 s~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  349 SPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             CchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence                          23567788999999976754

The molecular function of this protein is uncertain.

>KOG2422|consensus

Probab=83.49  E-value=4  Score=37.09  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=55.0

Q ss_pred             HHHHH-HhcCCCChHHHHHHHH-HHhhCcc-hHHHHhhC----------------HHHHHHHHHHHHHhhCCCChHHHHH
Q psy16144         17 EWHFL-LYLLPWRWEPLSAGLR-KKQYISS-ATNIYNLF----------------PDDAVVQYTQACRIIGTSDLALHQK   77 (122)
Q Consensus        17 ~~~~L-Lyi~~gk~d~A~elL~-~l~~nps-~~kA~e~l----------------y~dAa~~ye~Aw~l~~~~~~~vgyk   77 (122)
                      -|+.+ -..+.|=+.-|.+.++ .++.+|+ ++-+..++                +-++.+...+.|.+     |..||.
T Consensus       345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~-----PN~~yS  419 (665)
T KOG2422|consen  345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQL-----PNFGYS  419 (665)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc-----CCchHH
Confidence            34444 4556799999999999 9999999 55544433                33444444555555     556666


Q ss_pred             HH--HHHHhccc---HHHHHHHHHHHHHhCC
Q psy16144         78 LA--SLLLRMKR---YAEAIDVSQTIMKAHP  103 (122)
Q Consensus        78 LA--~~ylk~kr---~~~AI~vc~kVL~~~P  103 (122)
                      +|  ..|+....   -.-|.....++++.||
T Consensus       420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  420 LALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            55  55555554   4568888889999988

>KOG4555|consensus

Probab=83.48  E-value=4.6  Score=30.74  Aligned_cols=55  Identities=16%  Similarity=0.079  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .+.|..-|.+|+.+. |.++++..+=|..|-..|+-++|++=..++|...-+..|.
T Consensus        59 Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt  113 (175)
T KOG4555|consen   59 LDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT  113 (175)
T ss_pred             hHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH
Confidence            899999999999995 9999999999999999999999999999999987766543

>KOG1070|consensus

Probab=82.67  E-value=12  Score=37.41  Aligned_cols=92  Identities=11%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTS--DLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~--~~~vgykLA~~ylk~kr~~   89 (122)
                      +|...+++++|.++|+ .++--....+.|-..         -++|-...++|++.- |.  ...+-=+-|..=-|.|..+
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCch
Confidence            9999999999999999 888888777777632         456667788999884 77  5566667777888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      .+-.+++..|..+|---++|.--+|
T Consensus      1618 RGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhHHHHHHHHhhCccchhHHHHHHH
Confidence            8888999999999987777754444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.45  E-value=9.3  Score=36.25  Aligned_cols=96  Identities=11%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhCHHHHHHHHHHHHHhhC-----------------CCChHHHHHHHHHHHhc
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLFPDDAVVQYTQACRIIG-----------------TSDLALHQKLASLLLRM   85 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~ly~dAa~~ye~Aw~l~~-----------------~~~~~vgykLA~~ylk~   85 (122)
                      +..+.||.|....| ...--|+-...+|.+|..-++..|+|-+.++                 +.-|==..--|-+|.+.
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (932)
T PRK13184        486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRL  565 (932)
T ss_pred             HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHh
Confidence            34467899999999 8887888888888665545555555544433                 22233334458899999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhc
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYP---KVHKQIFEKAMVH  119 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~yp---kir~~il~ka~~~  119 (122)
                      |.|+|=|.++.-+|+.+|++|   +++..|...-...
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES  602 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence            999999999999999988886   4566666554433

>PRK10941 hypothetical protein; Provisional

Probab=82.17  E-value=8.5  Score=31.16  Aligned_cols=68  Identities=10%  Similarity=0.015  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChH
Q psy16144          6 VDTMQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLA   73 (122)
Q Consensus         6 ~~~~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~   73 (122)
                      ++..+|++.+  ++.|  .|++.++++.|..... ++..+|+++.-+.     |.    +..|..=++.-++.+ |++|.
T Consensus       174 a~~~~il~Rm--l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-P~dp~  250 (269)
T PRK10941        174 ADNIEVIRKL--LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-PEDPI  250 (269)
T ss_pred             CCHHHHHHHH--HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCchh
Confidence            3455666443  3344  8999999999999999 9999999876554     11    888989899999995 88887


Q ss_pred             HHH
Q psy16144         74 LHQ   76 (122)
Q Consensus        74 vgy   76 (122)
                      +..
T Consensus       251 a~~  253 (269)
T PRK10941        251 SEM  253 (269)
T ss_pred             HHH
Confidence            654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.83  E-value=9.3  Score=25.49  Aligned_cols=63  Identities=11%  Similarity=-0.012  Sum_probs=42.5

Q ss_pred             HHHHHHHH-HHhhCcchHHHHhhC--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         30 EPLSAGLR-KKQYISSATNIYNLF--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        30 d~A~elL~-~l~~nps~~kA~e~l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                      ++|.+++. +++.+.+ .+.-|-+  |++|+..+.++.... |+++.-    -+--.|.+.|-+=++..++.
T Consensus         4 ~~A~~~a~~AVe~D~~-gr~~eAi~~Y~~aIe~L~q~~~~~-pD~~~k----~~yr~ki~eY~~Rae~Lk~~   69 (75)
T cd02682           4 EMARKYAINAVKAEKE-GNAEDAITNYKKAIEVLSQIVKNY-PDSPTR----LIYEQMINEYKRRIEVLEKQ   69 (75)
T ss_pred             HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHhC-CChHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            57888888 8888886 6666555  889999999999984 777762    22334555555545544443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.27  E-value=25  Score=27.88  Aligned_cols=91  Identities=14%  Similarity=0.016  Sum_probs=63.7

Q ss_pred             HHHHHH-HhcCCCChHHHHHHHH-HHhhCcchHH---------HHhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         16 AEWHFL-LYLLPWRWEPLSAGLR-KKQYISSATN---------IYNLF----PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        16 ~~~~~L-Lyi~~gk~d~A~elL~-~l~~nps~~k---------A~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      +..++- |..+.|+...|+..|. +-+-+|+.-.         ||.++    |+|=+...|..-.-++|=-.++-=-||+
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl  175 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL  175 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence            334444 8889999999999999 7776666222         22233    8887776665433333333455567999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      .-.|.|+|.+|...+.++.. +.+-|+
T Consensus       176 Aa~kagd~a~A~~~F~qia~-Da~apr  201 (221)
T COG4649         176 AAYKAGDFAKAKSWFVQIAN-DAQAPR  201 (221)
T ss_pred             HHHhccchHHHHHHHHHHHc-cccCcH
Confidence            99999999999999988875 554554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=81.15  E-value=11  Score=33.17  Aligned_cols=87  Identities=15%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             HhcCCCChHHHHHHHH-HHh---hCcch----------HHHHhhC---HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQ---YISSA----------TNIYNLF---PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~---~nps~----------~kA~e~l---y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      --++.|++|.|.++++ ..+   +.|+-          .+|-+.+   ...|-..-.+|.++ .|++.-...-=|..|.+
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCccchHHHHHHHHHHh
Confidence            4567899999999988 432   23321          1222222   77888888899999 69988888888999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .|+..++-.+.+.+-+..| +|.|..
T Consensus       276 d~~~rKg~~ilE~aWK~eP-HP~ia~  300 (531)
T COG3898         276 DGNLRKGSKILETAWKAEP-HPDIAL  300 (531)
T ss_pred             ccchhhhhhHHHHHHhcCC-ChHHHH
Confidence            9999999999999999999 998864

>KOG1585|consensus

Probab=80.98  E-value=21  Score=29.71  Aligned_cols=67  Identities=24%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-HHHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHHhcccHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-PDDAVVQYTQACRIIGTSDL-----ALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-y~dAa~~ye~Aw~l~~~~~~-----~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      +|.+.|..|.|...|. +       .++.|-. +++|...|++++..--.++.     ...=+++..|.+.++|.||-.-
T Consensus       100 lY~E~GspdtAAmaleKA-------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKA-------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             HHHHhCCcchHHHHHHHH-------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence            8888888888888777 6       4555555 89999999999987533221     1223567788888999887654


Q ss_pred             H
Q psy16144         95 S   95 (122)
Q Consensus        95 c   95 (122)
                      .
T Consensus       173 ~  173 (308)
T KOG1585|consen  173 F  173 (308)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-04

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 10/77 (12%)

Query: 54  DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI- 112
             A+    +   +    D  L +  A   ++     +AI   +   K      +   +I 
Sbjct: 137 TAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 113 --------FEKAMVHLR 121
                    E ++  +R
Sbjct: 196 TLYYQLGDHELSLSEVR 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 10/77 (12%)

Query: 54  DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI- 112
             A+    +   +    D  L +  A   ++     +AI   +   K      +   +I 
Sbjct: 160 TAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218

Query: 113 --------FEKAMVHLR 121
                    E ++  +R
Sbjct: 219 TLYYQLGDHELSLSEVR 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.44
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.35
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.32
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.28
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.25
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.23
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.23
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.22
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.2
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.12
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.11
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.03
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.03
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.02
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.02
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.93
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.92
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.92
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.92
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.91
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.9
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.88
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.88
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.87
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.87
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.86
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.82
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.82
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.8
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.66
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.65
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.59
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.53
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.5
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.43
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.35
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.34
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.3
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.28
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.25
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.2
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.18
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.06
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.03
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.84
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.81
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.73
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.56
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.45
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.1
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.08
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.02
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.93
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.62
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.45
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.38
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.62
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.53
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.5
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.38
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.17
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.61
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	89.39
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.98
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	88.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.34
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	85.42
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	85.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.76
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.55
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	80.58

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.69  E-value=5.8e-16  Score=106.42  Aligned_cols=94  Identities=11%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++.+  .|.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|...
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHC
Confidence            4445  8899999999999999 999999999999844         99999999999999 899999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++.+|+..++++|+.+|+++.++..+
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            999999999999999999999998654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=8.4e-16  Score=110.34  Aligned_cols=90  Identities=14%  Similarity=0.031  Sum_probs=83.9

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ..|+.+  .+.+.|++++|.+.++ +++.+|+++.+|..+         |++|+.+|++|.++ +|+++.+.+.||.+|.
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHH
Confidence            345566  8889999999999999 999999999999844         99999999999999 7999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      +.|++.+|+..++++++..|+.|
T Consensus       116 ~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=1.1e-15  Score=107.19  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|+|++|.+.++ +++.+|+++.+|..+         +++|..+|++|+++ +|+++.+.+.||..|.+.|++.+|
T Consensus        40 ~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~a  118 (150)
T 4ga2_A           40 LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGR  118 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHH
Confidence            9999999999999999 999999999999855         99999999999999 799999999999999999999998


Q ss_pred             HHH-HHHHHHhCCCCHHHH
Q psy16144         92 IDV-SQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~v-c~kVL~~~P~ypkir  109 (122)
                      +.. ++++++.+|++|.+.
T Consensus       119 a~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A          119 AKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             HHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHH
Confidence            876 489999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.64  E-value=2.6e-15  Score=105.46  Aligned_cols=103  Identities=13%  Similarity=0.027  Sum_probs=91.4

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ..++.+  .+.+.|++++|.+.++ +++.+|.++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHHHH
Confidence            345555  8889999999999999 999999999999844         99999999999999 7999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~l  120 (122)
                      ..|++.+|+..++++++.+|++|... ++.++|...|
T Consensus       101 ~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~l  136 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQELIANXPEFX-ELSTRVSSML  136 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCCCcch-HHHHHHHHHH
Confidence            99999999999999999999988874 4666665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=3.7e-15  Score=102.42  Aligned_cols=101  Identities=9%  Similarity=0.019  Sum_probs=90.1

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .++.+  .+.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence            34445  7889999999999999 999999999999844         99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      .|++.+|+..++++++.+|++|... ++..++...
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~  132 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHE-ALAARAGAM  132 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGH-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHH
Confidence            9999999999999999999998874 456666544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=4.5e-15  Score=101.08  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=77.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .++.+  .+.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ +|+++.+.+.||.+|..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence            34445  7889999999999999 999999999999855         99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      .|++.+|++.++++++.+|+++++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~~  121 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQL  121 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCCC
Confidence            999999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.4e-14  Score=95.33  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .|..+  .+.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence            34445  7889999999999999 999999999998844         99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcc
Q psy16144         85 MKRYAEAIDVSQTIMKAH------PSYPKVHKQIFEKAMVHL  120 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~------P~ypkir~~il~ka~~~l  120 (122)
                      .|++.+|++.++++++.+      |+++.++. .+..+...|
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~-~l~~~~~~l  125 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQ-LYYKASQQR  125 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH-HHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHH-HHHHHHHhh
Confidence            999999999999999999      99888876 444554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.57  E-value=2.5e-14  Score=104.39  Aligned_cols=96  Identities=10%  Similarity=0.059  Sum_probs=87.1

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhh----------------C---------HHHHHHHHHHHHHh
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNL----------------F---------PDDAVVQYTQACRI   66 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~----------------l---------y~dAa~~ye~Aw~l   66 (122)
                      +..+...  .+++.|++++|.+.++ +++.+|+++.+|..                +         |++|...|++|+++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3344444  7788999999999999 99999999988877                5         99999999999999


Q ss_pred             hCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         67 IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        67 ~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                       +|+++.+.+.||.+|...|++.+|+..|+++++.+|+++.++..
T Consensus        84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~  127 (208)
T 3urz_A           84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF  127 (208)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence             79999999999999999999999999999999999999987653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.2e-13  Score=87.92  Aligned_cols=97  Identities=11%  Similarity=0.001  Sum_probs=87.9

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      ...|+.+  .+.+.|++++|.+.++ +++.+|+++.++..+         |++|...|+++++. .|+++.+.+.+|..|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence            3445555  8889999999999999 999999999888744         99999999999999 799999999999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .+.|++.+|++.++++++.+|+++.++..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            999999999999999999999999987644

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.55  E-value=7.7e-14  Score=97.19  Aligned_cols=92  Identities=8%  Similarity=-0.072  Sum_probs=85.0

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ..|+.+  +|.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence            345555  8889999999999999 999999999988844         99999999999999 7999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      +.|++.+|+..++++++.+|+++..
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHH
Confidence            9999999999999999999999883

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=1.7e-13  Score=95.23  Aligned_cols=101  Identities=9%  Similarity=0.089  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhh------------------CcchHHHHhhC---------HHHHHHH
Q psy16144         10 QIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQY------------------ISSATNIYNLF---------PDDAVVQ   59 (122)
Q Consensus        10 ~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~------------------nps~~kA~e~l---------y~dAa~~   59 (122)
                      +.++....+...  .+.+.|+|++|.+.++ +++.                  +|....+|..+         |++|...
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            344555666666  8889999999999999 9999                  77777777633         9999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCH-HHHHH
Q psy16144         60 YTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP-KVHKQ  111 (122)
Q Consensus        60 ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp-kir~~  111 (122)
                      +++|+++ +|+++.+.+.+|.+|...|++.+|+..++++++.+|+++ .++..
T Consensus        86 ~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  137 (162)
T 3rkv_A           86 SSEVLKR-EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE  137 (162)
T ss_dssp             HHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHhc-CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999 799999999999999999999999999999999999999 55543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=2e-13  Score=95.51  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +++|...+++|.++ .|+++.+.+.||..|.+.|++.+|++.|+++++.+|+++.+...
T Consensus        89 ~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           89 KQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence            77888888888888 68888888888888888888888888888888888888877643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.50  E-value=4.3e-13  Score=87.48  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=87.6

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      ...|..+  .+.+.|++++|.+.++ +++.+|.+..++..+         +++|...|+++++. +|+++.+.+.||..|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence            3455556  8889999999999999 999999998888743         99999999999999 799999999999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .+.|++.+|+..++++++.+|+++.++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  124 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGY  124 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            999999999999999999999998887543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8.7e-13  Score=87.74  Aligned_cols=95  Identities=11%  Similarity=0.005  Sum_probs=85.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcch---HHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSA---TNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~---~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      .|+.+  .+.+.|++++|.++++ +++.+|++   ..+|..+         |++|...|+++.++ +|+++.+.+.+|..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~  108 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHH
Confidence            34455  8889999999999999 99999997   6666633         99999999999999 79999999999999


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |...|++.+|+..++++++.+|+++.++..+
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            9999999999999999999999999998644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=3.1e-13  Score=99.14  Aligned_cols=92  Identities=11%  Similarity=0.034  Sum_probs=85.9

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++.+  ++.+.|++++|...++ +++.+|+++.+|..+         +++|...|++|.++ +|+++.+.+.||..|.+.
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-TPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHh
Confidence            3444  8889999999999999 999999999999844         99999999999999 799999999999999999


Q ss_pred             -----------ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 -----------KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 -----------kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                                 |++.+|+..++++++.+|+++.++.
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~  122 (217)
T 2pl2_A           87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL  122 (217)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence                       9999999999999999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=6.1e-13  Score=87.61  Aligned_cols=88  Identities=13%  Similarity=-0.023  Sum_probs=81.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~   85 (122)
                      .+.+.|++++|.+.++ +++.+|+++   .++..+         |++|...|+++.+. .|++   +.+.+.||.+|.+.
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHc
Confidence            7788999999999999 999999988   566633         99999999999999 7999   88899999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++.+|+..++++++.+|+++.+..
T Consensus        90 g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           90 GKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             TCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHH
Confidence            9999999999999999999987754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.48  E-value=1.5e-12  Score=83.85  Aligned_cols=95  Identities=9%  Similarity=0.008  Sum_probs=86.3

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .+..+  .+...|++++|.+.++ +++.+|+++.++..+         |++|...|+++.+. .|+++.+.+.+|.+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHHHHH
Confidence            34444  8889999999999999 999999988888744         99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .|++.+|+..++++++.+|+++.++..+
T Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence            9999999999999999999999887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.48  E-value=1.1e-13  Score=92.26  Aligned_cols=85  Identities=11%  Similarity=0.031  Sum_probs=75.4

Q ss_pred             CCCChHHHHHHHH-HHhh---CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQY---ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~---nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ..|++++|++.++ +++.   +|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHH
Confidence            4699999999999 9999   59888888844         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      ++.++++++.+|++|.++.
T Consensus        81 ~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHH
Confidence            9999999999999998853

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=5.1e-13  Score=91.27  Aligned_cols=94  Identities=12%  Similarity=0.081  Sum_probs=82.0

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh-------HHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL-------ALHQK   77 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~-------~vgyk   77 (122)
                      .+..|  .+.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++       .+.++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-GRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-CcccchhhHHHHHHHHH
Confidence            45556  8888999999999999 999999999998833         99999999999999 47664       47889


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         78 LASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        78 LA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      ||..|.+.|++.+|++.|+++|+.+|+ |.+.+.+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            999999999999999999999999994 7766544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=7.7e-13  Score=87.94  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=86.1

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |..+  .+...|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|.++ +|+++.+.+.||.+|.+.
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHH
Confidence            4444  8889999999999999 999999999988744         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCC-----CHHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPS-----YPKVHKQIF  113 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~-----ypkir~~il  113 (122)
                      |++.+|+..++++++.+|+     .+.+...+.
T Consensus        91 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B           91 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence            9999999999999999998     777765443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=2.3e-12  Score=87.20  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHH
Q psy16144         11 IIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKL   78 (122)
Q Consensus        11 ~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykL   78 (122)
                      .......|+.+  .+.+.|++++|.+.++ +++.+|.++.+|..+         |++|...|+++.+. +|+++.+.+.+
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~   87 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHH
Confidence            34555566666  8889999999999999 999999998888744         99999999999999 79999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |..|...|++.+|+..++++++.+|+++.++
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  118 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAK  118 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999999999999999876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=3.5e-12  Score=81.50  Aligned_cols=94  Identities=15%  Similarity=0.259  Sum_probs=85.7

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |+.+  ++.+.|++++|.++++ +++.+|++..++..+         +++|...|+++.+. +|+++.+.+.||..|...
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHh
Confidence            4444  7889999999999999 999999988887743         99999999999999 699999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++.+|+..++++++.+|+++.++..+
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l  117 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNL  117 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            999999999999999999999987643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.44  E-value=2.9e-12  Score=91.64  Aligned_cols=103  Identities=8%  Similarity=0.021  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchH----------------HHHhhC---------HHHHHHHH
Q psy16144          9 MQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSAT----------------NIYNLF---------PDDAVVQY   60 (122)
Q Consensus         9 ~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~----------------kA~e~l---------y~dAa~~y   60 (122)
                      -+.++....+..+  .+.+.|+|++|.++++ +++.+|+++                .+|..+         |++|...|
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3445555566666  8889999999999999 999998876                555522         99999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         61 TQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        61 e~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      ++|+++ +|+++.+.+.+|.+|...|++.+|++.++++++.+|+++.++..+
T Consensus       112 ~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A          112 SKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            999999 799999999999999999999999999999999999999987643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.44  E-value=2.1e-13  Score=95.48  Aligned_cols=90  Identities=13%  Similarity=0.020  Sum_probs=82.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++-+.|++|.|.+.++ ++..+|+.+.++..+         |++|..+|++|+++ +|+++.+.+.||.+|.+.|++.+|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-QERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCchHHH
Confidence            6778899999999999 999999988877633         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..++++++.+|++|.+...+
T Consensus        85 ~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999987543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=6e-13  Score=93.02  Aligned_cols=86  Identities=12%  Similarity=0.054  Sum_probs=78.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...++++.|.+.++ +++.+|++..++..+         |++|...|++++++ +|+++.+.+.||.+|.+.|++.+|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHHH
Confidence            7778889999999999 999999988887744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      +..++++|+.+|++++.
T Consensus       161 ~~~~~~al~~~p~~a~~  177 (184)
T 3vtx_A          161 VKYFKKALEKEEKKAKY  177 (184)
T ss_dssp             HHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHhCCccCHHH
Confidence            99999999999987653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=7.8e-13  Score=96.95  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             HHHH--HhcCC-----------CChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHH
Q psy16144         18 WHFL--LYLLP-----------WRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLAL   74 (122)
Q Consensus        18 ~~~L--Lyi~~-----------gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~v   74 (122)
                      |..+  +|.+.           |++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ + +++.+
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~  153 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E-DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CCHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c-cchHH
Confidence            4444  77788           99999999999 999999999998844         99999999999999 5 89999


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .+.||..|...|++.+|+..|+++++.+|+++.++...
T Consensus       154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l  191 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY  191 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            99999999999999999999999999999999987543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=3e-12  Score=82.68  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC-------hHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD-------LALHQ   76 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~-------~~vgy   76 (122)
                      ..|+.+  ++.+.|++++|.++++ +++.+|+++.++..+         |++|...|+++++. .|++       +.+.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccccchhHHHHHHHHH
Confidence            345555  8889999999999999 999999998888744         99999999999999 4777       89999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      .||..|.+.|++.+|++.++++++.+| .|.++..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  117 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK  117 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHH
Confidence            999999999999999999999999999 5777653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=1.5e-12  Score=114.13  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|..+|++|+++ +|+++.+.++||..|.+.|++++|
T Consensus        52 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           52 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            5555566666666666 666666655555522         66666666666666 566666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      ++.|+++|+++|+++.++..
T Consensus       131 i~~~~~Al~l~P~~~~a~~~  150 (723)
T 4gyw_A          131 IASYRTALKLKPDFPDAYCN  150 (723)
T ss_dssp             HHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHhh
Confidence            66666666666666655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=1.5e-12  Score=82.33  Aligned_cols=84  Identities=12%  Similarity=-0.010  Sum_probs=79.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhc-ccH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTS--DLALHQKLASLLLRM-KRY   88 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~--~~~vgykLA~~ylk~-kr~   88 (122)
                      ++.+.|++++|.+.++ +++.+|.+..+|..+         |++|...|+++.+. +|+  ++.+.+.||.+|.+. |++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~~~~~~~   93 (112)
T 2kck_A           15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADALRYIEGKE   93 (112)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHTTCSSCS
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHHHHHhCCH
Confidence            7889999999999999 999999998888743         99999999999999 699  999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q psy16144         89 AEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~yp  106 (122)
                      .+|++.++++++.+|+.|
T Consensus        94 ~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           94 VEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHhhcccCCC
Confidence            999999999999999865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.39  E-value=2.3e-12  Score=112.84  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++.|  +|.++|++++|++.++ +++.+|++..+|..+         +++|..+|++|+++ +|+++.+.++||..|...
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-~P~~~~a~~nLg~~l~~~   90 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEM   90 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Confidence            5556  9999999999999999 999999999999844         99999999999999 899999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++++|++.|+++++++|+++.+...
T Consensus        91 g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999988754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.38  E-value=6.8e-12  Score=90.57  Aligned_cols=87  Identities=11%  Similarity=-0.051  Sum_probs=80.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCc-chHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYIS-SATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~np-s~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      .|.+.|+|++|.+.++ +++.+| .+..++..+         |++|...|++|.++ +|+++.+.+.||.+|.+.|++.+
T Consensus        16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~   94 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-NYNLANAYIGKSAAYRDMKNNQE   94 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCSHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHcccHHH
Confidence            8889999999999999 999998 767666633         99999999999999 79999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir  109 (122)
                      |+..++++++.+|+++.+.
T Consensus        95 A~~~~~~al~~~p~~~~~~  113 (228)
T 4i17_A           95 YIATLTEGIKAVPGNATIE  113 (228)
T ss_dssp             HHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHCCCcHHHH
Confidence            9999999999999999654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=4.2e-12  Score=91.67  Aligned_cols=88  Identities=6%  Similarity=-0.084  Sum_probs=82.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL-------ALHQKLASLLLR   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~-------~vgykLA~~ylk   84 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|++++++ .|+++       .+.+.+|..|.+
T Consensus        51 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~~  129 (228)
T 4i17_A           51 CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-VPGNATIEKLYAIYYLKEGQKFQQ  129 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhHHHHH
Confidence            8899999999999999 999999999998844         99999999999999 79999       779999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCC--CHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPS--YPKVHK  110 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~--ypkir~  110 (122)
                      .|++.+|++.|+++++.+|+  ++.+..
T Consensus       130 ~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A          130 AGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             TTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            99999999999999999999  777654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.35  E-value=1.3e-11  Score=96.98  Aligned_cols=96  Identities=8%  Similarity=0.044  Sum_probs=86.1

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcch---------------HHHHhhC---------HHHHHHHHHHHHHhhC
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSA---------------TNIYNLF---------PDDAVVQYTQACRIIG   68 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~---------------~kA~e~l---------y~dAa~~ye~Aw~l~~   68 (122)
                      ..|+.+  +|.+.|+|++|.+.++ +++.+|++               ..+|..+         |++|...|++|+++ +
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~  226 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-D  226 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            345555  8889999999999999 99999998               4666633         99999999999999 7


Q ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         69 TSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        69 ~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |+++.+.+.+|.+|...|++.+|+..++++++.+|+++.++..+
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  270 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL  270 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999887543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.8e-11  Score=87.42  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.+.++ +++.+|+++.+|..+         |++|...|+++++. +|+++.+.+.||..|.+.|++.+|
T Consensus       148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHH
Confidence            8889999999999999 999999999888744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhC------CCCHHHHHHH
Q psy16144         92 IDVSQTIMKAH------PSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~------P~ypkir~~i  112 (122)
                      +..++++++.+      |+++.++..+
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHH
Confidence            99999999999      9888887643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.33  E-value=4.7e-12  Score=93.80  Aligned_cols=84  Identities=10%  Similarity=0.086  Sum_probs=77.1

Q ss_pred             CCChHHHHHHHH-HHhhCcchHHHHhhC-------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         26 PWRWEPLSAGLR-KKQYISSATNIYNLF-------------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      .+.|++|.+.++ +++.||+++.+|.-+                   +++|+..|++|+++ +|+++.+.|.||.+|...
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHh
Confidence            467999999999 999999999999833                   46999999999999 899999999999999988


Q ss_pred             c-----------cHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 K-----------RYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 k-----------r~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |           ++++|+..|+++++++|+++..++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5           899999999999999999987765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.33  E-value=2.2e-11  Score=88.29  Aligned_cols=89  Identities=13%  Similarity=0.009  Sum_probs=83.0

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |..+  +|...|++++|.+.++ +++.+|.++.+|..+         |++|...|++|.++ +|+++.+.+.||.+|.+.
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHh
Confidence            4444  8899999999999999 999999999998844         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      |++.+|+..++++++.+|+++.
T Consensus       125 g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A          125 GRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999984

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=1.2e-11  Score=86.34  Aligned_cols=92  Identities=18%  Similarity=0.267  Sum_probs=82.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------H--HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------P--DDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y--~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      -|..+  +|...|++++|.+.++ +++.+|+++.++..+          +  ++|...|+++++. +|+++.+.+.||..
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~  124 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL-DSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence            34555  8999999999999999 999999988877632          6  9999999999999 79999999999999


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |...|++.+|+..++++++.+|+++...
T Consensus       125 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          125 AFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999999999999999999887543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.32  E-value=7.3e-12  Score=101.65  Aligned_cols=87  Identities=7%  Similarity=0.032  Sum_probs=45.2

Q ss_pred             HhcCCCC-hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWR-WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk-~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      ++...|+ +++|.+.++ +++.||.+..+|..+         |++|...|++|+++ +|+|+.+.+.+|.+|.+.|++.+
T Consensus       140 ~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-dP~~~~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          140 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcCChHH
Confidence            4444454 555555555 555555555555422         45555555555555 45555555555555555555555


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir  109 (122)
                      |++.|+++++.+|+++.++
T Consensus       219 Al~~~~~al~l~P~~~~a~  237 (382)
T 2h6f_A          219 ELQYVDQLLKEDVRNNSVW  237 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHH
Confidence            5555555555555555444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.32  E-value=1.7e-12  Score=96.23  Aligned_cols=99  Identities=13%  Similarity=-0.026  Sum_probs=83.5

Q ss_pred             HHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcc-------hHH-----HHhhC---------HHHHHHHHHHHHHh---
Q psy16144         14 TIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISS-------ATN-----IYNLF---------PDDAVVQYTQACRI---   66 (122)
Q Consensus        14 ~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps-------~~k-----A~e~l---------y~dAa~~ye~Aw~l---   66 (122)
                      ...+|...  .+.+.|+|++|.+.++ +++++|+       ...     +|.-+         |++|..+|++|+++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            34444444  7788999999999999 9999999       333     55522         99999999999998   


Q ss_pred             ---hCCCChHHH----HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         67 ---IGTSDLALH----QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        67 ---~~~~~~~vg----ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                         .+|+++.+.    |++|.+|.+.|++++|+..|+++++++|+..-|.+++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence               149999999    9999999999999999999999999999987765544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.32  E-value=3.9e-12  Score=103.25  Aligned_cols=92  Identities=7%  Similarity=0.069  Sum_probs=83.9

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      |+.+  ++.+.|++++|.+.++ +++.||++..+|..+          |++|...|++|+++ +|+++.+.+.+|.+|.+
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence            4444  8888999999999999 999999999999843          99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .|++.+|+..|+++|+.+|+++.++.
T Consensus       179 ~g~~~eAl~~~~kal~ldP~~~~a~~  204 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAKNYHAWQ  204 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCccCHHHHH
Confidence            99999999999999999999998864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=4.3e-11  Score=76.66  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.+.|++++|.++++ +++.+|++..++..+         +++|...|+++.+. +|+++.+.+.+|..|...|++.+|
T Consensus        10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A   88 (136)
T 2fo7_A           10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEA   88 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHhcCHHHH
Confidence            6777788888888888 888888877776633         88888888888888 688888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..++++++.+|+.+.+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~  108 (136)
T 2fo7_A           89 IEYYQKALELDPRSAEAWYN  108 (136)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHH
Confidence            88888888888888776543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.31  E-value=2.4e-11  Score=93.71  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH-----HHHhhC------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT-----NIYNLF------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~-----kA~e~l------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      +|.+.|++++|.+.++ +++.+|+..     .+|..+      +++|...|+++.+. .|+++.+.+.||..|++.|+++
T Consensus       139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~  217 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE  217 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence            6777777777777777 777777654     233221      77777777777777 5777777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|++.++++|+.+|++|.+...
T Consensus       218 eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          218 AAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Confidence            7777777777777777776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=6e-11  Score=80.28  Aligned_cols=89  Identities=18%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.++++ +++.+|+...++..+         +++|...|+++.+. .|.++.+.+.+|..|.+.|++.+|
T Consensus        51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHH
Confidence            7777888888888888 888888877777633         88888888888888 688888888888888888888888


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      ++.++++++.+|+++.+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A          130 IDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCccchHHHHH
Confidence            88888888888888776543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.30  E-value=1.5e-12  Score=93.24  Aligned_cols=79  Identities=11%  Similarity=0.070  Sum_probs=72.5

Q ss_pred             HHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy16144         32 LSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        32 A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      +...++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|+|.+|++.|+++++.
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            445677 899999999998844         99999999999999 8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHH
Q psy16144        102 HPSYPKVHKQ  111 (122)
Q Consensus       102 ~P~ypkir~~  111 (122)
                      +|++|.++..
T Consensus       100 ~P~~~~~~~~  109 (151)
T 3gyz_A          100 GKNDYTPVFH  109 (151)
T ss_dssp             SSSCCHHHHH
T ss_pred             CCCCcHHHHH
Confidence            9999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.30  E-value=2.3e-11  Score=86.62  Aligned_cols=87  Identities=9%  Similarity=0.024  Sum_probs=49.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.++++ +++.+|+++.++..+         +++|...|+++++. .|+++.+.+.||..|.+.|++.+|
T Consensus       134 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHH
Confidence            4555555555555555 555555555544422         55555555555555 455555555566666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      +..++++++.+|+++.++
T Consensus       213 ~~~~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          213 LEMLDKAIDIQPDHMLAL  230 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHccCcchHHHH
Confidence            666666666666555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=3.2e-11  Score=85.52  Aligned_cols=85  Identities=8%  Similarity=-0.012  Sum_probs=74.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCCh----------------HHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDL----------------ALH   75 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~----------------~vg   75 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|+++.++ .|+++                .+.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~  124 (213)
T 1hh8_A           46 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVL  124 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHH
Confidence            8888999999999999 999999988888743         99999999999998 47666                899


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         76 QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        76 ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +.||.+|.+.|++.+|+..++++++.+|++..
T Consensus       125 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          125 YNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            99999999999999999999999999997644

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.28  E-value=9.3e-11  Score=83.69  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=80.6

Q ss_pred             HhcCCCChHHHHHHHH-HHh--------------------------hCcchHHHHhhC---------HHHHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQ--------------------------YISSATNIYNLF---------PDDAVVQYTQACR   65 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~--------------------------~nps~~kA~e~l---------y~dAa~~ye~Aw~   65 (122)
                      +|.+.|++++|.+.++ +++                          .+|+.+.+|..+         |++|...|+++++
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            8899999999999999 999                          677777766633         9999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         66 IIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        66 l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      . +|+++.+.+.||..|.+.|++.+|+..++++++.+|+++.+...
T Consensus       168 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          168 R-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             c-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            9 79999999999999999999999999999999999999987653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.27  E-value=1.8e-11  Score=93.76  Aligned_cols=91  Identities=16%  Similarity=0.096  Sum_probs=74.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------------------------------------HHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------------------------------------PDDAV   57 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------------------------------y~dAa   57 (122)
                      .+.+.|++++|.+.++ +++.+|+++.++..+                                           +++|+
T Consensus       126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~  205 (287)
T 3qou_A          126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI  205 (287)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence            6667777777777777 777777777666522                                           33467


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--HHHHHHHH
Q psy16144         58 VQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY--PKVHKQIF  113 (122)
Q Consensus        58 ~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y--pkir~~il  113 (122)
                      ..|++|++. +|+++.+.+.||..|+..|++++|++.++++++.+|++  +.++....
T Consensus       206 ~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          206 QQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             HHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            778888898 79999999999999999999999999999999999999  77776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=2e-11  Score=86.11  Aligned_cols=93  Identities=16%  Similarity=0.089  Sum_probs=78.8

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      |+.+  +|.+.|++++|.+.++ +++.+| .+..+...          ..+|...|++|++. +|+++.+.+.||..|..
T Consensus        43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~  120 (176)
T 2r5s_A           43 KLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQ  120 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence            4445  8899999999999999 999998 66554422          23479999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCC--HHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSY--PKVHKQI  112 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~y--pkir~~i  112 (122)
                      .|++++|++.++++++.+|++  +.++...
T Consensus       121 ~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A          121 VGRDEEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence            999999999999999999987  4466544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.26  E-value=7.9e-11  Score=94.62  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHH--HhcCCCChHHHHHHHH-HHh----------------hCcchHHHHhhC---------HHHHHHHHHH
Q psy16144         11 IIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQ----------------YISSATNIYNLF---------PDDAVVQYTQ   62 (122)
Q Consensus        11 ~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~----------------~nps~~kA~e~l---------y~dAa~~ye~   62 (122)
                      .++....|..+  .+.+.|+|++|.+.++ +++                .+|....+|..+         |++|...|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34444556666  8889999999999999 998                667666776633         9999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         63 ACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        63 Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |+++ +|+++.+.+.+|.+|...|++.+|++.++++++.+|+++.++..+
T Consensus       299 al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          299 ALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHh-CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999 799999999999999999999999999999999999999987643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.26  E-value=1.4e-11  Score=85.90  Aligned_cols=88  Identities=13%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhcccH--H
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL-LLRMKRY--A   89 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~-ylk~kr~--~   89 (122)
                      +...|++++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.+|.+ |...|++  .
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcCCcchH
Confidence            456799999999999 999999999998844         99999999999999 69999999999999 8999999  9


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+..++++++.+|+++.++..
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999988654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.25  E-value=5.9e-11  Score=91.44  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|++..+|..+         +++|...|+++.++ +|+++.+.+.||..|.+.|++.+|
T Consensus       178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A  256 (388)
T 1w3b_A          178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCCHHHHHHHHHHHHHcCCHHHH
Confidence            5566666666666666 666666665555422         55666666666666 466666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      ++.++++++.+|++|.+.
T Consensus       257 ~~~~~~al~~~p~~~~~~  274 (388)
T 1w3b_A          257 IDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHH
T ss_pred             HHHHHHHHhhCCCCHHHH
Confidence            666666666666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.25  E-value=1.6e-10  Score=85.68  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=84.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh---------h--C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN---------L--F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e---------~--l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      ++.+.|++++|.+.++ +++.+|+++..+.         +  .  |++|...|+++.+. +|+++.+.+.+|..|.+.|+
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCC
Confidence            6889999999999999 9999999774432         1  1  99999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH  119 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~~il~ka~~~  119 (122)
                      +.+|++.++++++.+|+++.++.. |.++...
T Consensus       322 ~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~  352 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHNENDQQIREG-LEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHH-HHHHHHH
Confidence            999999999999999999999864 4454443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.25  E-value=1.4e-10  Score=82.60  Aligned_cols=87  Identities=18%  Similarity=0.103  Sum_probs=50.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+...++..+         +++|...|+++++. .|+++.+.+.+|..|.+.|++.+|
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-GMENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHH
Confidence            5555566666666666 556555555554422         55666666666655 455555566666666666666666


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      +..++++++.+|+++.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~  162 (243)
T 2q7f_A          145 LPYLQRAVELNENDTEAR  162 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhCCccHHHH
Confidence            666666666666555544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=6.5e-11  Score=97.49  Aligned_cols=94  Identities=14%  Similarity=0.063  Sum_probs=86.0

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |+.+  +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ +|+++.+.+.||.+|.+.
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~  104 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGHALEDA  104 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence            4455  8889999999999999 999999999888744         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++.+|++.++++++.+|+++.+...+
T Consensus       105 g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A          105 GQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999886544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.24  E-value=8.5e-11  Score=96.20  Aligned_cols=96  Identities=10%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcch---------------HHHHhhC---------HHHHHHHHHHHHHhh
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSA---------------TNIYNLF---------PDDAVVQYTQACRII   67 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~---------------~kA~e~l---------y~dAa~~ye~Aw~l~   67 (122)
                      ...|+.+  .|.+.|+|++|...++ +++.+|++               ..+|..+         |++|..+|++|+++ 
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            3445555  8889999999999999 99999998               4555522         99999999999999 


Q ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         68 GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        68 ~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+++.+.|++|.+|++.|+|.+|+..|+++++.+|+++.++..
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  390 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ  390 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            79999999999999999999999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.23  E-value=6.9e-11  Score=86.00  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh-------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR-------   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk-------   84 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|++++++ +|+++.+.+.||..|..       
T Consensus        63 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-EADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhHHHHH
Confidence            8899999999999999 999999999999844         99999999999999 79999999988877643       


Q ss_pred             ----------------------------cccHHHHHHHHHHHHHhCCCCH
Q psy16144         85 ----------------------------MKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        85 ----------------------------~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                                                  .|+|.+|++.++++++.+|+..
T Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence                                        3468899999999999999753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.23  E-value=1e-10  Score=79.16  Aligned_cols=90  Identities=10%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.+.++ +++.+|+++.++..+         +++|...|+++.+. .|+++.+.+.+|..|...|++.+|
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A   95 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLA   95 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHH
Confidence            7888999999999999 999999988887744         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      ++.++++++.+|+++.+...+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~  116 (186)
T 3as5_A           96 VPLLIKVAEANPINFNVRFRL  116 (186)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCcHhHHHHHHH
Confidence            999999999999999876543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.23  E-value=1.1e-10  Score=86.14  Aligned_cols=92  Identities=12%  Similarity=0.012  Sum_probs=81.1

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcch---HHHHhhC---------HHHHHHHHHHHHHhhCCCC---hHHHHHHH
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSA---TNIYNLF---------PDDAVVQYTQACRIIGTSD---LALHQKLA   79 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~---~kA~e~l---------y~dAa~~ye~Aw~l~~~~~---~~vgykLA   79 (122)
                      ++.+  .+.+.|+|++|.+.|+ +++.+|++   +.++..+         |++|...|+++++. .|++   +.+.|.||
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg   96 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-YQIDPRVPQAEYERA   96 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-CCCCchhHHHHHHHH
Confidence            4444  8889999999999999 99999998   7777644         99999999999999 5644   67899999


Q ss_pred             HHHHh--------cccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         80 SLLLR--------MKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        80 ~~ylk--------~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .+|.+        .|++.+|+..++++++.+|+++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  135 (261)
T 3qky_A           97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD  135 (261)
T ss_dssp             HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence            99999        99999999999999999999987753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.23  E-value=8e-11  Score=87.38  Aligned_cols=95  Identities=16%  Similarity=0.094  Sum_probs=86.7

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .|..+  .+.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|+++++. +|+++.+.+.||..|.+
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~   83 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-KMDFTAARLQRGHLLLK   83 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHH
Confidence            34444  8889999999999999 999999999988844         99999999999999 79999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCC---CCHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHP---SYPKVHKQI  112 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P---~ypkir~~i  112 (122)
                      .|++.+|+..|+++++.+|   +++.+...+
T Consensus        84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  114 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQL  114 (359)
T ss_dssp             HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence            9999999999999999999   888887654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.22  E-value=7.9e-11  Score=88.94  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=76.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|++++++ +|+++.+.+.||..|.+.|++.+|
T Consensus       226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHH
Confidence            8889999999999999 999999988888744         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q psy16144         92 IDVSQTIMKAHPSY  105 (122)
Q Consensus        92 I~vc~kVL~~~P~y  105 (122)
                      +..++++++.+|+.
T Consensus       305 ~~~~~~al~~~~~~  318 (368)
T 1fch_A          305 VEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999988

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.22  E-value=5.3e-11  Score=93.76  Aligned_cols=101  Identities=9%  Similarity=-0.011  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH-----------------HHhhC---------HHHHHHHHH
Q psy16144         11 IIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN-----------------IYNLF---------PDDAVVQYT   61 (122)
Q Consensus        11 ~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k-----------------A~e~l---------y~dAa~~ye   61 (122)
                      -++....++.+  .+.+.|+|++|...++ +++.+|++..                 +|..+         |++|...|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34555556666  9999999999999999 9999998762                 44422         999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         62 QACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        62 ~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      +|+++ +|+++.+.|++|.+|+..|++.+|+..++++++.+|+++.++..+
T Consensus       255 ~al~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          255 IVLTE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             HHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999 799999999999999999999999999999999999999887643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=1.5e-10  Score=74.12  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++.+.|++++|.++++ +++.+|+.+.++..+         +++|...|+++.+. .|+++.+.+.+|..|.+.|++.+|
T Consensus        44 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           44 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHH
Confidence            7888999999999999 999999988877633         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q psy16144         92 IDVSQTIMKAHPSY  105 (122)
Q Consensus        92 I~vc~kVL~~~P~y  105 (122)
                      +..++++++.+|+.
T Consensus       123 ~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          123 IEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHccCCCC
Confidence            99999999999963

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.22  E-value=2.8e-11  Score=92.35  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=83.7

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |..+  .+.+.|++++|.++++ +++.+|+++.+|..+         |++|...|++|.++ +|+++.+.+.||..|...
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-QPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHcc
Confidence            4445  8888999999999999 999999999999854         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++.+|+.+++++++.+|+++.+..
T Consensus       147 g~~~~A~~~~~~al~~~p~~~~~~~  171 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPKYKYLVK  171 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred             ccHHHHHHHHHHHHHhCccchHHHh
Confidence            9999999999999999998877653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=7.3e-11  Score=90.94  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=62.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++.+.|++++|..+++ +++.+|.++.+|..+         +++|...|++|+++ +|+++.+.+.||..|.+.|++.+|
T Consensus        42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A  120 (388)
T 1w3b_A           42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDMEGA  120 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHcCCHHHH
Confidence            6667777777777777 777777777666633         77777777777777 577777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      ++.++++++.+|+++.++.
T Consensus       121 ~~~~~~al~~~p~~~~~~~  139 (388)
T 1w3b_A          121 VQAYVSALQYNPDLYCVRS  139 (388)
T ss_dssp             HHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHH
Confidence            7777777777777666554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.22  E-value=1.2e-10  Score=89.87  Aligned_cols=87  Identities=14%  Similarity=-0.031  Sum_probs=80.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...|++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ +|+++.+.++||..+...|++.++
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHH
Confidence            5667799999999999 999999999988733         99999999999999 899999999999999999999874


Q ss_pred             -HHHHHHHHHhCCCCHHHH
Q psy16144         92 -IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 -I~vc~kVL~~~P~ypkir  109 (122)
                       ...++++++.+|++|.++
T Consensus       254 a~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          254 TNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhCCCChHHH
Confidence             688899999999999986

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.22  E-value=3.5e-11  Score=92.05  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=81.3

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      +..+  .+.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|.++ +|+++.+.+.||..|...
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Confidence            4444  7888999999999999 999999999888743         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      |++.+|+..++++++.+|+++
T Consensus        86 g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           86 ESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.21  E-value=3.1e-11  Score=84.48  Aligned_cols=80  Identities=14%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             HHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy16144         31 PLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        31 ~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~  100 (122)
                      .+.+.++ +++.+|+...++..+         |++|...|++|+++ +|+++.+.+.||.+|...|++.+|++.|+++++
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3445678 999999998888733         99999999999999 799999999999999999999999999999999


Q ss_pred             hCCCCHHHHHH
Q psy16144        101 AHPSYPKVHKQ  111 (122)
Q Consensus       101 ~~P~ypkir~~  111 (122)
                      .+|++|.+.-.
T Consensus        84 l~p~~~~~~~~   94 (148)
T 2vgx_A           84 MDIXEPRFPFH   94 (148)
T ss_dssp             HSTTCTHHHHH
T ss_pred             cCCCCchHHHH
Confidence            99999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.20  E-value=8.8e-11  Score=97.06  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=83.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.+.|++++|.++++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||..|...|++.+|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            7889999999999999 999999999888844         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..++++++.+|+++.++..
T Consensus        94 ~~~~~~al~~~p~~~~~~~~  113 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMK  113 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=2.1e-10  Score=89.06  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ..|..+  .|.+.|++++|.++++ +++.+|+++.+|..+         |++|...|+++.+. +|+++.+.+.||..|.
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence            344555  8899999999999999 999999999888844         99999999999999 7999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCH---HHHHHH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYP---KVHKQI  112 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~yp---kir~~i  112 (122)
                      +.|++.+|+.+++++++.+|+++   .++..+
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  137 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL  137 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999998   665544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.20  E-value=1.1e-10  Score=88.97  Aligned_cols=89  Identities=12%  Similarity=0.136  Sum_probs=67.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc--hHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS--ATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps--~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      +|.+.|++++|.++++ +++.+|+  .+.+|..+         |++|...|+++++. +|+++.+.+.||..|.+.|++.
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~  264 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSE  264 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Confidence            6777788888888888 8888887  66666533         88888888888888 6888888888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+..|+++++.+|+++.+...
T Consensus       265 ~A~~~~~~al~~~p~~~~~~~~  286 (365)
T 4eqf_A          265 EAVEAYTRALEIQPGFIRSRYN  286 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCchHHHHH
Confidence            8888888888888888776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.18  E-value=2.5e-10  Score=84.28  Aligned_cols=90  Identities=13%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             HhcCCC-ChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPW-RWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~g-k~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      +|...| ++++|.+.++ +++.+|+.+.+|..+         |++|...|+++.+. .|+++.+.+.||..|...|++.+
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-MKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHhhHHH
Confidence            777888 8888888888 888888888887744         88888888888888 58888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |+..++++++.+|+++.+...+
T Consensus       178 A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          178 AERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHH
Confidence            8888888888888888776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.18  E-value=1.9e-10  Score=86.88  Aligned_cols=91  Identities=9%  Similarity=-0.014  Sum_probs=84.3

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      ++.+  .|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|+++.++ +|+++.+.+.||..|...
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-KPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence            3444  8889999999999999 999999999988844         99999999999999 799999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |++.+|+..++++++.+|+++.+.
T Consensus       146 g~~~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHH
Confidence            999999999999999999998775

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.18  E-value=9.6e-11  Score=86.49  Aligned_cols=94  Identities=12%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhC---------cchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHH
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYI---------SSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQ   76 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~n---------ps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgy   76 (122)
                      ++.+  +|.+.|++++|.+.++ +++.+         |..+.+|..+         +++|...|++++++ +|+++.+.+
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~  274 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYS  274 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHH
Confidence            4444  8899999999999999 99987         5555666533         99999999999999 799999999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .||..|.+.|++.+|+..++++++.+|+++.++..+
T Consensus       275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (330)
T 3hym_B          275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML  310 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence            999999999999999999999999999999887643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.18  E-value=4.4e-10  Score=78.58  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc-ccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM-KRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~-kr~~~   90 (122)
                      .+.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|+++.+. .|+++.+.+.+|..|... |++.+
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~~   95 (225)
T 2vq2_A           17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGWFLCGRLNRPAE   95 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCcHHH
Confidence            5666667777777776 666666666655532         66666677776666 466666666667666666 67777


Q ss_pred             HHHHHHHHHH
Q psy16144         91 AIDVSQTIMK  100 (122)
Q Consensus        91 AI~vc~kVL~  100 (122)
                      |+..++++++
T Consensus        96 A~~~~~~~~~  105 (225)
T 2vq2_A           96 SMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            7776666666

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=6e-10  Score=82.21  Aligned_cols=85  Identities=13%  Similarity=0.037  Sum_probs=75.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch---HHHHh-------h--------C--HHHHHHHHHHHHHhhCCCChHHH-----
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA---TNIYN-------L--------F--PDDAVVQYTQACRIIGTSDLALH-----   75 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~---~kA~e-------~--------l--y~dAa~~ye~Aw~l~~~~~~~vg-----   75 (122)
                      +|.+.|++++|.+.++ +++.+|++   +.++.       .        +  +++|...|+++.+. .|+++.+.     
T Consensus        61 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~  139 (261)
T 3qky_A           61 AYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNHELVDDATQK  139 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTCTTHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCchhHHHHHHH
Confidence            8999999999999999 99998854   33333       3        5  89999999999999 79998887     


Q ss_pred             ------------HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         76 ------------QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        76 ------------ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                                  +.+|..|.+.|++.+|+..|+++++.+|+++.
T Consensus       140 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          140 IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence                        99999999999999999999999999999654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=2.1e-10  Score=93.97  Aligned_cols=88  Identities=8%  Similarity=0.025  Sum_probs=83.1

Q ss_pred             HhcCCCCh-HHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc-----
Q psy16144         22 LYLLPWRW-EPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM-----   85 (122)
Q Consensus        22 Lyi~~gk~-d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~-----   85 (122)
                      +|...|++ ++|++.++ +++.+|+++.+|..+         |++|..+|++|+++ +|+ +.+.+.||..|...     
T Consensus       111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-~~~~~~lg~~~~~~~~~~~  188 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CKN-KVSLQNLSMVLRQLQTDSG  188 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-CCC-HHHHHHHHHHHTTCCCSCH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC-HHHHHHHHHHHHHhccCCh
Confidence            89999999 99999999 999999999999855         99999999999999 688 79999999999999     


Q ss_pred             ----ccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         86 ----KRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        86 ----kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                          |++.+|+..++++++.+|+++.++..
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  218 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYI  218 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                99999999999999999999988653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.17  E-value=2.7e-10  Score=83.92  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=76.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.++++ +++.+|+++.+|..+         +++|...|+++++. .|+++.+.+.||..|.+.|++.+|
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhccHHHH
Confidence            8889999999999999 999999988888744         99999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q psy16144         92 IDVSQTIMKAHPS  104 (122)
Q Consensus        92 I~vc~kVL~~~P~  104 (122)
                      +..++++++.+|+
T Consensus       260 ~~~~~~a~~~~~~  272 (327)
T 3cv0_A          260 AKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCc
Confidence            9999999999998

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.15  E-value=1.4e-10  Score=79.25  Aligned_cols=78  Identities=13%  Similarity=0.093  Sum_probs=67.7

Q ss_pred             HHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         33 SAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        33 ~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      ...|+ +++.+|+...++..+         |++|...|+++++. +|+++.+.+.||.+|.+.|++.+|+..|+++++.+
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45778 899999988877633         99999999999999 79999999999999999999999999999999999


Q ss_pred             CCCHHHHHH
Q psy16144        103 PSYPKVHKQ  111 (122)
Q Consensus       103 P~ypkir~~  111 (122)
                      |++|.+...
T Consensus        83 p~~~~~~~~   91 (142)
T 2xcb_A           83 INEPRFPFH   91 (142)
T ss_dssp             TTCTHHHHH
T ss_pred             CCCcHHHHH
Confidence            999998654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.15  E-value=4.1e-10  Score=81.21  Aligned_cols=87  Identities=21%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.+.++ +++.+|....++..+         +++|...|+++++. +|+++.+.+.||..|...|++.+|
T Consensus        46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A  124 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-DSRNARVLNNYGGFLYEQKRYEEA  124 (252)
T ss_dssp             HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHHhHHHHH
Confidence            5556666666666666 666666655555522         66666666666666 466666666666666666666666


Q ss_pred             HHHHHHHHH--hCCCCHHHH
Q psy16144         92 IDVSQTIMK--AHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~--~~P~ypkir  109 (122)
                      ++.++++++  .+|+.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~  144 (252)
T 2ho1_A          125 YQRLLEASQDTLYPERSRVF  144 (252)
T ss_dssp             HHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHHhCccCcccHHHH
Confidence            666666665  445444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=4.8e-10  Score=79.36  Aligned_cols=81  Identities=11%  Similarity=0.028  Sum_probs=73.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.+.++ ++  +| .+.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|
T Consensus        15 ~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A   90 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLYYQTEKYDLA   90 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcccHHHH
Confidence            8889999999999999 86  44 35566533         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCH
Q psy16144         92 IDVSQTIMKAHPSYP  106 (122)
Q Consensus        92 I~vc~kVL~~~P~yp  106 (122)
                      +..++++++..|+++
T Consensus        91 ~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHhCCCcc
Confidence            999999999999876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.15  E-value=7.2e-10  Score=77.49  Aligned_cols=88  Identities=7%  Similarity=-0.230  Sum_probs=69.3

Q ss_pred             HhcCC-CChHHHHHHHH-HHh--hCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH
Q psy16144         22 LYLLP-WRWEPLSAGLR-KKQ--YISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY   88 (122)
Q Consensus        22 Lyi~~-gk~d~A~elL~-~l~--~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~   88 (122)
                      +|... |++++|.++++ +++  .+|+...++..+         +++|...|+++++. .|+++.+.+.||..|.+.|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCH
Confidence            77788 88888888888 887  556556666533         88888888888888 588888888888888888888


Q ss_pred             HHHHHHHHHHHHhCC-CCHHHHH
Q psy16144         89 AEAIDVSQTIMKAHP-SYPKVHK  110 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P-~ypkir~  110 (122)
                      .+|++.++++++.+| +++.+..
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~  186 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLL  186 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHH
Confidence            888888888888888 7777653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=2.1e-11  Score=104.40  Aligned_cols=86  Identities=14%  Similarity=-0.026  Sum_probs=49.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|++..+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+ 
T Consensus       442 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~-  519 (681)
T 2pzi_A          442 ALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-FPGELAPKLALAATAELAGNTDE-  519 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCCCT-
T ss_pred             HHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHH-
Confidence            5555566666666666 666666655555532         55555555555555 45555555555555555555555 


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      ++.|+++++.+|+++.++
T Consensus       520 ~~~~~~al~~~P~~~~a~  537 (681)
T 2pzi_A          520 HKFYQTVWSTNDGVISAA  537 (681)
T ss_dssp             TCHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhCCchHHHH
Confidence            555555555555555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.14  E-value=2.7e-10  Score=77.86  Aligned_cols=72  Identities=15%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             HHhhCcchHHHHh-----hC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         38 KKQYISSATNIYN-----LF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        38 ~l~~nps~~kA~e-----~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      +...||+.+.+|.     ++    |++|+..|++|+++ +|+++.+.+.+|.+|.+.|++.+|++.|+++++.+|+++++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            3457888877775     22    99999999999999 79999999999999999999999999999999999999988


Q ss_pred             HH
Q psy16144        109 HK  110 (122)
Q Consensus       109 r~  110 (122)
                      ..
T Consensus        84 ~~   85 (126)
T 4gco_A           84 YI   85 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.14  E-value=2.9e-10  Score=93.07  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             HHHH--HhcCC---------CChHHHHHHHH-HHhhCcchHHHHhhC-----------------HHHHHHHHHHHHHhhC
Q psy16144         18 WHFL--LYLLP---------WRWEPLSAGLR-KKQYISSATNIYNLF-----------------PDDAVVQYTQACRIIG   68 (122)
Q Consensus        18 ~~~L--Lyi~~---------gk~d~A~elL~-~l~~nps~~kA~e~l-----------------y~dAa~~ye~Aw~l~~   68 (122)
                      +..+  +|.+.         |++++|.+.++ +++.+|+++.+|..+                 |++|...|++|+++ +
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~  251 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-D  251 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-C
Confidence            4444  88898         99999999999 999999999988732                 78999999999999 7


Q ss_pred             C---CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         69 T---SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        69 ~---~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |   +++.+.+.||..|.+.|++.+|++.++++++.+|+++.++..
T Consensus       252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~  297 (474)
T 4abn_A          252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR  297 (474)
T ss_dssp             GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9   999999999999999999999999999999999999987643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.14  E-value=7.4e-10  Score=79.84  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             HhcCCCChHHHHHHHH-HHh--hCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQ--YISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~--~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~   89 (122)
                      +|.+.|++++|.++++ +++  .+|....++..+         +++|...|+++++. .|.++.+.+.||..|.+.|++.
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHH
Confidence            6777788888888888 777  677766666533         77888888888877 5777778888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +|++.++++++.+|+++.+..
T Consensus       193 ~A~~~~~~~~~~~~~~~~~~~  213 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQNARSLL  213 (252)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcCcHHHHH
Confidence            888888888887877776643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.14  E-value=3.2e-10  Score=74.36  Aligned_cols=82  Identities=15%  Similarity=0.035  Sum_probs=73.1

Q ss_pred             HHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy16144         30 EPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        30 d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL   99 (122)
                      ++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|+..+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            57889999 999999999988844         99999999999999 79999999999999999999999999999999


Q ss_pred             HhCCCC--HHHHHHH
Q psy16144        100 KAHPSY--PKVHKQI  112 (122)
Q Consensus       100 ~~~P~y--pkir~~i  112 (122)
                      +.+|+.  +....++
T Consensus        81 ~~~~~~~~~~~~~~l   95 (115)
T 2kat_A           81 AAAQSRGDQQVVKEL   95 (115)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HhccccccHHHHHHH
Confidence            999854  4444444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.13  E-value=7.1e-11  Score=101.18  Aligned_cols=91  Identities=8%  Similarity=0.003  Sum_probs=84.8

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |+.+  +|.+.|++++|.+.|+ +++.+|+++.+|..+         |++ ...|++|+++ +|+++.+.+.||..|.+.
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGVISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCchHHHHHHHHHHHHHc
Confidence            4445  8899999999999999 999999999998844         889 9999999999 899999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++++|++.|+++++.+|+++.++.
T Consensus       548 g~~~~A~~~~~~al~l~P~~~~a~~  572 (681)
T 2pzi_A          548 GDRVGAVRTLDEVPPTSRHFTTARL  572 (681)
T ss_dssp             TCHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred             CCHHHHHHHHHhhcccCcccHHHHH
Confidence            9999999999999999999998874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.12  E-value=7.2e-10  Score=87.71  Aligned_cols=88  Identities=13%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.+.++ +++.+|+++.+|..+         |++|...|+++.+. +|+++.+.+.||..|...|++.+|
T Consensus       285 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            6667777777777777 777777766666533         77777777777777 577777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      +++++++++.+|+++.+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~  382 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPT  382 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHhCCCChHHHH
Confidence            7777777777777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.12  E-value=3.3e-10  Score=82.87  Aligned_cols=92  Identities=9%  Similarity=-0.022  Sum_probs=79.0

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchH---HHHhhC---------HHHHHHHHHHHHHhhCCCChH---HHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSAT---NIYNLF---------PDDAVVQYTQACRIIGTSDLA---LHQKL   78 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~---kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~---vgykL   78 (122)
                      .++.+  .+.+.|+|++|.+.|+ +++.+|+++   .++..+         |++|+..|+++.+. .|+++.   +.|.+
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCcHHHHHHHH
Confidence            34555  7888999999999999 999999864   455432         99999999999999 799886   78999


Q ss_pred             HHHHHh------------------cccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         79 ASLLLR------------------MKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        79 A~~ylk------------------~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |.+|.+                  .|++.+|+..++++++.+|+++.+.
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            999886                  6899999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.12  E-value=4.1e-10  Score=81.83  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=47.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      +|.+.|++++|.+.++ +++ .|..+.    +|..+         |++|...|+++.+. +|+++.+.+.||..|.+.|+
T Consensus        46 ~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~  123 (272)
T 3u4t_A           46 CYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKGN  123 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHccC
Confidence            5555555555555555 555 222211    12211         55666666666665 45556666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +.+|+..++++++.+|+++.+..
T Consensus       124 ~~~A~~~~~~al~~~~~~~~~~~  146 (272)
T 3u4t_A          124 FPLAIQYMEKQIRPTTTDPKVFY  146 (272)
T ss_dssp             HHHHHHHHGGGCCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHH
Confidence            66666666666666665555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.12  E-value=5.1e-10  Score=82.47  Aligned_cols=90  Identities=13%  Similarity=0.124  Sum_probs=81.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.++++ +++.+|+.+.+|..+         +++|...|+++.+. +|+++.+.+.||..|...|++.+|
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A  108 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAA  108 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHHHHHHHHcCCHHHH
Confidence            7888999999999999 999999999888744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..++++++.+|+++.+....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A          109 LASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHHHHHHHTSTTTTTC----
T ss_pred             HHHHHHHHHhCCccHHHHHHH
Confidence            999999999999988776443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=1.1e-09  Score=85.02  Aligned_cols=90  Identities=12%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      ++...|++++|.++++ +++.+|+++.    ++..+         +++|...|+++.++ +|+++.+.+.||..|.+.|+
T Consensus       266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcC
Confidence            7888999999999999 9999999754    33322         99999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      +.+|+..++++++.+|+++.++..+
T Consensus       345 ~~~A~~~~~~al~~~p~~~~~~~~l  369 (450)
T 2y4t_A          345 YDEAIQDYETAQEHNENDQQIREGL  369 (450)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHH
Confidence            9999999999999999999987543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=9.7e-10  Score=88.51  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhh------Ccch-HHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHH
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQY------ISSA-TNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKL   78 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~------nps~-~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykL   78 (122)
                      |..+  +|.+.|++++|.++++ +++.      +|+. ..+|..+         +++|...|+++.++ +|+++.+.+.|
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l  556 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-STNDANVHTAI  556 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence            4445  8999999999999999 9998      5553 5566533         99999999999999 69999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |..|.+.|++.+|++.++++++.+|+++.++..
T Consensus       557 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            999999999999999999999999999988753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.3e-09  Score=85.27  Aligned_cols=99  Identities=9%  Similarity=0.010  Sum_probs=85.8

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      ..|..+  .|.+.|+|++|.+.++ +++.+|+ +.+|..+         |++|...|+++.++ +|+++.+.+.+|..|.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL-KPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHH
Confidence            344555  8899999999999999 9999995 7777643         99999999999999 7999999999999999


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      +.|++.+|+..++++++.+|..+......+...
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  117 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERN  117 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence            999999999999999999997766655555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.09  E-value=4.9e-10  Score=81.45  Aligned_cols=87  Identities=11%  Similarity=0.052  Sum_probs=79.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLA-SLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA-~~ylk~kr~~~   90 (122)
                      +|.+.|++++|.+.++ +++.+|+.+.+|..+         |++|...|+++.++ +|+++.+.+.|| ..|.. +++.+
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~-~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYN-KEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHT-TCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHH-HHHHH
Confidence            8999999999999999 999999999888744         99999999999999 799999999999 65555 59999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~  110 (122)
                      |+..++++++.+|+++....
T Consensus       161 A~~~~~~a~~~~p~~~~~~~  180 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYL  180 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHH
Confidence            99999999999999987643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.09  E-value=5.2e-10  Score=80.97  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhh----CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY----ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~----nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      ++..+|++++|.+.++ +++.    +|..+.+|..+         |++|...|++|.++ +|+++.+.+.||..|...|+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHccC
Confidence            4457799999999999 9997    45667777643         99999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      +.+|+..++++++.+|+++.+...+
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHH
Confidence            9999999999999999999876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.03  E-value=2.9e-09  Score=85.75  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=81.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      -|..+  +|.+.|++++|.++++ +++.+|++..+|..+         +++|...|+++.+. +|+++.+.+.||..|.+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~  453 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQ  453 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHH
Confidence            34445  8888999999999999 999999988888744         89999999999998 68899999999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .|++++|+.+++++++.+|++|.+...+
T Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l  481 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALFQYDPLLLNEL  481 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999988776544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.03  E-value=3.4e-09  Score=77.46  Aligned_cols=86  Identities=8%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH---HHhh-------------------------C--HHHHHHHHHHHHHhhCCC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN---IYNL-------------------------F--PDDAVVQYTQACRIIGTS   70 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k---A~e~-------------------------l--y~dAa~~ye~Aw~l~~~~   70 (122)
                      +|.+.|++++|.+.++ +++.+|+++.   |+..                         .  +++|...|+++++. .|+
T Consensus        50 ~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~  128 (225)
T 2yhc_A           50 AYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPN  128 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTT
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcC
Confidence            8899999999999999 9999999875   4431                         2  78999999999999 799


Q ss_pred             ChHHH-----------------HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         71 DLALH-----------------QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        71 ~~~vg-----------------ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      ++.+.                 +.+|..|.+.|++.+|+..++++++.+|+.|..
T Consensus       129 ~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          129 SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence            98765                 688999999999999999999999999999854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.02  E-value=2e-09  Score=88.60  Aligned_cols=88  Identities=11%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM   85 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~   85 (122)
                      |..+  +|.+.|++++|.+.++ +++.+|++..+|..+         +++|...|++|+++ +|+++.+.+.||..|...
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence            4445  8899999999999999 999999999888744         99999999999999 799999999999999999


Q ss_pred             ---ccHHHHHHHHHHHHHhCCCCH
Q psy16144         86 ---KRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        86 ---kr~~~AI~vc~kVL~~~P~yp  106 (122)
                         |++++|++.++++++.+|++.
T Consensus       139 ~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          139 CDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             TCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             hccccHHHHHHHHHHHHhcCCccc
Confidence               999999999999999999863

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.02  E-value=3.9e-09  Score=83.51  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...|++++|.+.++ +++.+|+ ..+|..+         +++|...|+++.+. +|+++.+.+.+|..|...|++.+|
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence            8889999999999999 9999999 7777643         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      ++.++++++.+|+++.+...
T Consensus       330 ~~~~~~a~~~~~~~~~~~~~  349 (537)
T 3fp2_A          330 KEDFQKAQSLNPENVYPYIQ  349 (537)
T ss_dssp             HHHHHHHHHHCTTCSHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999987654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.99  E-value=2.8e-09  Score=83.39  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      +++|...|+++.+. +|+++.+.+.||..|.+.|++.+|++.++++++.+|+++.+.
T Consensus       431 ~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          431 FIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence            44455555555544 344455555555555555555555555555555555444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.95  E-value=6e-09  Score=68.83  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|+++ +|+++.+.+.+|.+|.+.|++.+|++.|+++++.+|+++.+...
T Consensus        20 ~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A           20 WPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.95  E-value=8e-09  Score=63.70  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|++. +|+++.+.+.||..|.+.|++.+|+..++++++.+|+++.++..
T Consensus        25 ~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A           25 YDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            88888888888888 68889999999999999999999999999999999999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=2e-09  Score=82.21  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=55.9

Q ss_pred             HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         38 KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        38 ~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      ....-|+...++..+         +++|...|++|++. +|+++.+.+.||..|+..|++++|+++++++++.+|++
T Consensus       109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~  184 (287)
T 3qou_A          109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT  184 (287)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred             HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence            334447766665522         99999999999999 79999999999999999999999999888887777744

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.93  E-value=7.1e-10  Score=70.52  Aligned_cols=56  Identities=9%  Similarity=0.175  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~-vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |++|...|+++++. +|+++. +.+.+|.+|.+.|++.+|+..++++++.+|+++.++
T Consensus        16 ~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           16 IENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            77777777887777 677777 888888888888888888888888888888887765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.92  E-value=1.1e-08  Score=68.80  Aligned_cols=80  Identities=11%  Similarity=0.047  Sum_probs=71.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHH--HHHHHHHHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALH--QKLASLLLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vg--ykLA~~ylk~kr~~   89 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|++++++ +|+++.+.  +.++..+.+.|++.
T Consensus        56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~  134 (166)
T 1a17_A           56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFE  134 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999 999999999888744         99999999999999 79999888  55555699999999


Q ss_pred             HHHHHHHHHHHhC
Q psy16144         90 EAIDVSQTIMKAH  102 (122)
Q Consensus        90 ~AI~vc~kVL~~~  102 (122)
                      +|+..+.++....
T Consensus       135 ~A~~~~~~~~~~~  147 (166)
T 1a17_A          135 RAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHh
Confidence            9999999877554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.92  E-value=3.5e-09  Score=80.55  Aligned_cols=91  Identities=9%  Similarity=0.007  Sum_probs=69.9

Q ss_pred             HHHH--HhcCC-CChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhhCCCChH-----
Q psy16144         18 WHFL--LYLLP-WRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRIIGTSDLA-----   73 (122)
Q Consensus        18 ~~~L--Lyi~~-gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~-----   73 (122)
                      ++.+  +|.+. |++++|.+.++ +++.+|+.      ..++..+         |++|...|+++.++ .|+++.     
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~  198 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHH
Confidence            4445  88886 99999999999 99998864      2333321         99999999999999 577654     


Q ss_pred             --HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         74 --LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        74 --vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                        +.+++|.+|...|++++|+..|+++++.+|+++..+
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence              568999999999999999999999999999988753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.92  E-value=3.7e-09  Score=82.90  Aligned_cols=90  Identities=10%  Similarity=-0.002  Sum_probs=79.8

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      -|..+  +|.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence            34445  9999999999999999 999999999999844         99999999999999 79999999999999999


Q ss_pred             cccHHHH-HHHHHHHHHhCCCCHH
Q psy16144         85 MKRYAEA-IDVSQTIMKAHPSYPK  107 (122)
Q Consensus        85 ~kr~~~A-I~vc~kVL~~~P~ypk  107 (122)
                      .|++.+| ...|++++...++.|+
T Consensus       277 ~~~~~~a~~~~~~~~~~~~~~~~~  300 (336)
T 1p5q_A          277 IRRQLAREKKLYANMFERLAEEEN  300 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999999 6689999876554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.91  E-value=3.2e-10  Score=72.34  Aligned_cols=52  Identities=19%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      |++|...|++|+++ +|+++.+.+.+|.+|.+.|++.+|++.|+++++.+|++
T Consensus        20 ~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           20 YREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            66666677777776 57777777777777777777777777777777777776

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.90  E-value=6.8e-09  Score=81.45  Aligned_cols=85  Identities=13%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         26 PWRWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|++++|.+.++ +++.+|+++.++..+             +++|...|++|.+. +|+++.+.+.||..|.+.|++.+|
T Consensus       188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A  266 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKA  266 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHH
Confidence            344455555555 555555544443311             67899999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      ++.++++++.+|+++.+...
T Consensus       267 ~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          267 IELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHH
Confidence            99999999999999988654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.89  E-value=1.6e-08  Score=77.05  Aligned_cols=88  Identities=9%  Similarity=0.002  Sum_probs=52.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-HHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh-cccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-IYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR-MKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-A~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk-~kr~~   89 (122)
                      ++.+.|++++|.+.++ +++.+|..+. +|..+         +++|...|++|.+. +|.++.+....|....+ .|++.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCCHH
Confidence            5566677777777777 7777666554 55422         66666666666666 45555555444444322 46666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +|+.+|+++++.+|++|.++.
T Consensus       187 ~A~~~~~~al~~~p~~~~~~~  207 (308)
T 2ond_A          187 VAFKIFELGLKKYGDIPEYVL  207 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHH
Confidence            666666666666666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.88  E-value=1.8e-08  Score=63.88  Aligned_cols=77  Identities=16%  Similarity=0.097  Sum_probs=69.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-HHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-IYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-A~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      .+.+.|++++|.+.++ +++.+|+++. +|..+         |++|...|++|+++ +|+++.+.+.        +.+.+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~--------~~~~~   79 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-NPDSPALQAR--------KMVMD   79 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHH--------HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHH--------HHHHH
Confidence            6778899999999999 9999999998 88744         99999999999999 7999988754        78899


Q ss_pred             HHHHHHHHHHhCCCCHH
Q psy16144         91 AIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypk  107 (122)
                      |+..++++++.+|+.+.
T Consensus        80 a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           80 ILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHhccCccccc
Confidence            99999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.88  E-value=1.6e-08  Score=66.77  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|+++ +|+++.+.+.||.+|...|++.+|+..++++++.+|+++.++..
T Consensus        25 ~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B           25 YPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.88  E-value=2.8e-09  Score=72.48  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      |++|+.+|++|+++ +|+++.+.+++|.+|.+.|+|.+|++.|+++++++|+++..
T Consensus        24 ~~~A~~~y~~Al~~-~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A           24 FEKAHVHYDKAIEL-DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            99999999999999 79999999999999999999999999999999999977643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.88  E-value=2.4e-09  Score=69.89  Aligned_cols=66  Identities=12%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             hCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         41 YISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        41 ~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      .+|+++.+|..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|++.++++++..|+.+.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            367777777633         99999999999999 7999999999999999999999999999999999885443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.3e-08  Score=64.78  Aligned_cols=81  Identities=7%  Similarity=-0.114  Sum_probs=71.5

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC------hHHHHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD------LALHQK   77 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~------~~vgyk   77 (122)
                      ..|..+  .+.+.|+|++|.+.++ +++.+|+++.+|..+         |++|...|++|+++ +|++      +.+.+.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHH
Confidence            345555  8889999999999999 999999999988744         99999999999999 7999      899999


Q ss_pred             HHHHHHhcccHHHHHHHHHH
Q psy16144         78 LASLLLRMKRYAEAIDVSQT   97 (122)
Q Consensus        78 LA~~ylk~kr~~~AI~vc~k   97 (122)
                      +|..+...|++.+|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999999888875544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.87  E-value=1.6e-08  Score=70.00  Aligned_cols=58  Identities=19%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|+++ +|+++.+.+.||.+|.+.|+|.+|+..|+++++.+|+++.++..
T Consensus        27 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A           27 YSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.86  E-value=1.3e-08  Score=63.87  Aligned_cols=58  Identities=14%  Similarity=0.242  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS--YPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~--ypkir~~  111 (122)
                      |++|...|++++++ .|+++.+.+.+|..|...|++.+|+..++++++.+|+  ++.+...
T Consensus        22 ~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A           22 YTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            99999999999999 7999999999999999999999999999999999999  8887653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.86  E-value=1.1e-08  Score=73.29  Aligned_cols=84  Identities=13%  Similarity=0.029  Sum_probs=72.4

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHhh-------CCC
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRII-------GTS   70 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l~-------~~~   70 (122)
                      +..+  +|...|++++|.++++ +++.        +|..+.++..+         |++|...|++|.++.       +|.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  125 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD  125 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            4444  8889999999999999 9987        36666666633         999999999999984       366


Q ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy16144         71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        71 ~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      .+.+.+.||..|...|++.+|++.++++++.
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.86  E-value=1.2e-08  Score=80.06  Aligned_cols=84  Identities=18%  Similarity=0.072  Sum_probs=75.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------------------------HHHHHHHHHHHHHhhCCCCh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------------------------PDDAVVQYTQACRIIGTSDL   72 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------------------------y~dAa~~ye~Aw~l~~~~~~   72 (122)
                      +|.+.|++++|.+.++ +++.+|+++.++..+                            +++|...|++|.++ +|.++
T Consensus       256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~  334 (472)
T 4g1t_A          256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-NDNLF  334 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-CTTTC
T ss_pred             HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCchh
Confidence            8889999999999999 999999988877522                            67899999999999 79999


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         73 ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        73 ~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      .+.+.||..|.+.|++.+|++.|+++|+.+|+..
T Consensus       335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999999998654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.85  E-value=1.5e-08  Score=74.07  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=73.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHh-----------------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRI-----------------   66 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l-----------------   66 (122)
                      +|...|++++|.++++ +++.        +|....++..+         +++|...|+++++.                 
T Consensus       162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  241 (311)
T 3nf1_A          162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW  241 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence            8999999999999999 9998        77777666633         99999999999986                 


Q ss_pred             -------------------------------hCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         67 -------------------------------IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        67 -------------------------------~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                                                     .+|.++.+.+.||..|.+.|++.+|+..++++++..|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                                           35777888999999999999999999999999999885

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.84  E-value=1.4e-08  Score=77.39  Aligned_cols=85  Identities=7%  Similarity=-0.012  Sum_probs=76.8

Q ss_pred             CCCCh-------HHHHHHHH-HHh-hCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHhc
Q psy16144         25 LPWRW-------EPLSAGLR-KKQ-YISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLA-LHQKLASLLLRM   85 (122)
Q Consensus        25 ~~gk~-------d~A~elL~-~l~-~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~-vgykLA~~ylk~   85 (122)
                      +.|++       ++|.+.++ +++ .+|++..+|..+         +++|...|++|+++ +|.++. +.+.+|..+.+.
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~  147 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHh
Confidence            35886       99999999 999 799999888733         99999999999998 799997 999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++.+|+.+++++++..|+++.+..
T Consensus       148 ~~~~~A~~~~~~a~~~~p~~~~~~~  172 (308)
T 2ond_A          148 EGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999998877653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.83  E-value=2.3e-08  Score=67.45  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +++|...|++|++. +|+++.+.+.||.+|...|++.+|+..++++++.+|+++.++..
T Consensus        33 ~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           33 LAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.82  E-value=1.7e-08  Score=76.79  Aligned_cols=85  Identities=18%  Similarity=0.049  Sum_probs=71.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHh-------h-C--HHHHHHHHHHHHHhhCCCC------hHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYN-------L-F--PDDAVVQYTQACRIIGTSD------LALHQKL   78 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e-------~-l--y~dAa~~ye~Aw~l~~~~~------~~vgykL   78 (122)
                      +|.+.|++++|.+.++ +++..|..      ..++.       . +  |++|..+|++|+++. |.+      ..+..+|
T Consensus        86 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~l  164 (292)
T 1qqe_A           86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKC  164 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHH
Confidence            8899999999999999 99988764      22332       2 3  899999999999994 543      4567899


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      |..|.+.|+|.+|++.|+++++.+|+.+.
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.82  E-value=3.4e-09  Score=74.52  Aligned_cols=88  Identities=10%  Similarity=-0.053  Sum_probs=74.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-hcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL-RMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl-k~kr~~~   90 (122)
                      .+.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|+++.+. .| ++.+...++...+ ..+...+
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-~p-~~~~~~~~~~~~~~~~~~~~~   92 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-YQ-DNSYKSLIAKLELHQQAAESP   92 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-GC-CHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-cC-ChHHHHHHHHHHHHhhcccch
Confidence            7888999999999999 999999999999844         99999999999999 58 8887766664433 3344456


Q ss_pred             HHHHHHHHHHhCCCCHHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |+..++++++.+|++|.++..
T Consensus        93 a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            899999999999999988754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.80  E-value=4.3e-08  Score=60.32  Aligned_cols=69  Identities=13%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .|+.+  +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|+++.++ +|+++.+.+.||..|.+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHh
Confidence            34455  8889999999999999 999999999888744         99999999999999 79999999999999987


Q ss_pred             cc
Q psy16144         85 MK   86 (122)
Q Consensus        85 ~k   86 (122)
                      .|
T Consensus        90 ~g   91 (91)
T 1na3_A           90 QG   91 (91)
T ss_dssp             HC
T ss_pred             cC
Confidence            64

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.79  E-value=2.6e-09  Score=88.23  Aligned_cols=87  Identities=14%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH--HH
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL--LL   83 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~--yl   83 (122)
                      |..+  +|.+.|++++|.+.++ +++.+|+.+.+|..+         |++|...|++|+++ +|+++.+.+.|+..  +.
T Consensus        43 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Confidence            4445  8999999999999999 999999999998844         99999999999999 79999999999999  99


Q ss_pred             hcccHHHHHHHHH-----------HHHHhCCCC
Q psy16144         84 RMKRYAEAIDVSQ-----------TIMKAHPSY  105 (122)
Q Consensus        84 k~kr~~~AI~vc~-----------kVL~~~P~y  105 (122)
                      +.|++.+|+++++           ++++.+|++
T Consensus       122 ~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          122 KQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999           999988876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.76  E-value=4.6e-09  Score=82.62  Aligned_cols=92  Identities=13%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH-Hh
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL-LR   84 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y-lk   84 (122)
                      |+.+  +|.+.|+|++|.+.++ +++.+|++.++|..+         |++|...|++|.++ +|+++.+...|+... ..
T Consensus       233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence            4445  8999999999999999 999999999999844         99999999999999 799999999999984 45


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .+....+...|++++...|++|..++
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~~~~~  337 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGGAKSK  337 (338)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence            56778889999999999998876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.75  E-value=9.9e-08  Score=69.61  Aligned_cols=88  Identities=19%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHhh-------
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRII-------   67 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l~-------   67 (122)
                      +..+..+  .|...|++++|.++++ +++.        +|....++..+         |++|...|++|+++.       
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            3345555  8889999999999999 9985        67767776643         999999999999984       


Q ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         68 GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        68 ~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      .+..+.+.+.||..|...|++.+|+..++++++..
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            35567889999999999999999999999999885

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.75  E-value=3.8e-09  Score=86.35  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC---------------hHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD---------------LALHQKLA   79 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~---------------~~vgykLA   79 (122)
                      ..++|++|.+.++ .++.+|..+.+|..+         |++|...|++|+++ .|++               ..+.++||
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-LEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccCChHHHHHHHHHHHHHHHHHH
Confidence            4457888998899 888898888877633         99999999999999 5888               69999999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .+|++.|+|.+|+..|+++|+.+|+++++..
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  355 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLDSANEKGLY  355 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHH
Confidence            9999999999999999999999999998864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.75  E-value=4.1e-08  Score=70.35  Aligned_cols=86  Identities=16%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHhh-------CCC
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRII-------GTS   70 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l~-------~~~   70 (122)
                      +..+  +|...|++++|.++++ +++.        +|....++..+         |++|...|++++++.       .|.
T Consensus        88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  167 (283)
T 3edt_B           88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN  167 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            4444  9999999999999999 9988        57766666633         999999999999982       355


Q ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        71 ~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      ...+.+.||.+|.+.|++.+|+..++++++..|
T Consensus       168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            677899999999999999999999999998744

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.70  E-value=7.8e-09  Score=68.35  Aligned_cols=59  Identities=20%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRII--GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~--~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|+++.  +|+++.+.+.||.+|.+.|+|.+|+..++++++.+|++|.+...
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            678999999999993  48889999999999999999999999999999999999988653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=1.5e-07  Score=59.25  Aligned_cols=59  Identities=17%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++|...|+++++. .|+++.+.+.+|..|...|++.+|+..++++++.+|+++.+...+
T Consensus        20 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A           20 IDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            99999999999999 699999999999999999999999999999999999999876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=1.5e-07  Score=60.03  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|+++++. .|+++.+.+.+|..|...|++.+|+..++++++.+|+++.+...
T Consensus        28 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A           28 FEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            99999999999999 69999999999999999999999999999999999999887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.68  E-value=9.3e-08  Score=61.74  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      |++|...|+++++. .|+++.+.+.+|..|...|++.+|+..++++++.+|+++.+...+
T Consensus        32 ~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           32 YPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            99999999999999 799999999999999999999999999999999999999876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.66  E-value=9.1e-08  Score=67.99  Aligned_cols=83  Identities=8%  Similarity=0.045  Sum_probs=65.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++.++..+         |++|...|++|.++ +|+++.+...|+.++.+.+++.++
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999998854         99999999999999 799999999999999999999998


Q ss_pred             H-HHHHHHHHhCCCC
Q psy16144         92 I-DVSQTIMKAHPSY  105 (122)
Q Consensus        92 I-~vc~kVL~~~P~y  105 (122)
                      . ..+.+++...+.|
T Consensus       176 ~~~~~~~~f~~~~~~  190 (198)
T 2fbn_A          176 DKLTFGGMFDKGPLY  190 (198)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHhcccchh
Confidence            8 6677777655544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.65  E-value=8.4e-08  Score=66.13  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhh-----------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRII-----------------GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~-----------------~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|+..|++|+++.                 +|.++.+.++||.+|++.|+|.+|+..|+++++.+|+++++..
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  101 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALF  101 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHH
Confidence            999999999999982                 3667799999999999999999999999999999999998864

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.63  E-value=1e-07  Score=72.85  Aligned_cols=85  Identities=8%  Similarity=0.011  Sum_probs=69.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhhCCCCh------HHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRIIGTSDL------ALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~------~vgykLA   79 (122)
                      +|.+ |++++|.++++ +++..|..      ..++..+         |++|..+|++|.++. +.++      .+.+.+|
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHH
Confidence            7878 99999999999 99988753      2333311         999999999999985 4332      3778899


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .+|+..|++++|+..+++++ .+|+++..+
T Consensus       203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~  231 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY-SIPGFSGSE  231 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred             HHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence            99999999999999999999 999887543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.63  E-value=7.2e-08  Score=71.21  Aligned_cols=56  Identities=23%  Similarity=0.321  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHhcccHHHHHHHHHHHHHh-------CCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTS-------DLA-----LHQKLASLLLRMKRYAEAIDVSQTIMKA-------HPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~-------~~~-----vgykLA~~ylk~kr~~~AI~vc~kVL~~-------~P~ypkir  109 (122)
                      |++|+.+|++|+++ +|+       +..     +.+++|.++.+.|+|.+|++.|+++|+.       +|++++.+
T Consensus        27 ~eeAi~~Y~kAL~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~  101 (159)
T 2hr2_A           27 YDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW  101 (159)
T ss_dssp             HHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence            99999999999999 588       333     9999999999999999999999999999       99999988

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=1.9e-07  Score=61.53  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSD---LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~---~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|+++++. .|++   +.+.+.+|..|.+.|++.+|+..|+++++.+|+++.+...
T Consensus        44 ~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           44 YGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            99999999999999 6887   8999999999999999999999999999999999887643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.63  E-value=8.1e-08  Score=63.92  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      ..+|...+++|+++ +|+++.+.+-||..+.+.|+|.+||+.++++|+.+|+.|..
T Consensus        25 ~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A           25 TDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            57888999999999 79999999999999999999999999999999999985543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=4.9e-07  Score=57.11  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +++|...|+++++. .|+++.+.+.+|..|.+.|++.+|+..++++++.+|+++.+...
T Consensus        25 ~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A           25 YDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            99999999999999 69999999999999999999999999999999999999877543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.59  E-value=4.1e-07  Score=73.98  Aligned_cols=89  Identities=9%  Similarity=-0.003  Sum_probs=61.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH-HHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhcccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT-NIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL-LLRMKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~-kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~-ylk~kr~~   89 (122)
                      ++.+.|++++|.++++ +++.+|+++ .+|...         +++|...|++|++. .|.++.+....|.. |...|++.
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~~~~~~~~a~~~~~~~~~~~  408 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYCSKDKS  408 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHcCChh
Confidence            6777888888888888 888888764 466522         67777777777776 45555555544443 33577777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|..+++++|+.+|++|.++..
T Consensus       409 ~A~~~~e~al~~~p~~~~~~~~  430 (530)
T 2ooe_A          409 VAFKIFELGLKKYGDIPEYVLA  430 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHH
Confidence            7777777777777777766543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.59  E-value=1.5e-07  Score=68.39  Aligned_cols=90  Identities=12%  Similarity=0.024  Sum_probs=74.3

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC---------HHHHHHHHHHHHHhh-----CCCChHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF---------PDDAVVQYTQACRII-----GTSDLAL   74 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l---------y~dAa~~ye~Aw~l~-----~~~~~~v   74 (122)
                      ..+...  .+.+.|++++|.++++ +++.+|+++.    ++..+         |++|...|++|.++.     .+..+.+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            345555  8889999999999999 9999999753    33322         999999999999883     2344678


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      .+.||..|...|++.+|++.++++++..|..
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999987754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.59  E-value=2e-07  Score=60.82  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        54 ~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      .+|...|+++++. +|+++.+.+.||..|...|++.+|+..|+++++.+|+++.++..
T Consensus         2 ~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   58 (115)
T 2kat_A            2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW   58 (115)
T ss_dssp             CCHHHHHHHHHTT-TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            3588999999999 79999999999999999999999999999999999999987643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.58  E-value=4.1e-07  Score=59.25  Aligned_cols=53  Identities=11%  Similarity=0.061  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         53 PDDAVVQYTQACRIIGTSDL---ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~---~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      |++|...|+++++. .|+++   .+.+.+|.+|.+.|++.+|++.++++++.+|+++
T Consensus        18 ~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A           18 YDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             HHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            99999999999999 69999   7999999999999999999999999999999993

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.57  E-value=1.8e-06  Score=72.74  Aligned_cols=89  Identities=7%  Similarity=-0.103  Sum_probs=72.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHh----hCCCChHHH---H
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRI----IGTSDLALH---Q   76 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l----~~~~~~~vg---y   76 (122)
                      -+-.+|+|++|+++++ +|+.        +|+-...+.-+         |++|...|++|++.    -+|++|.++   .
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4668899999999999 8875        33333433321         99999999999864    368888875   5


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHh-----CCCCHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKA-----HPSYPKVHK  110 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~-----~P~ypkir~  110 (122)
                      +||..|...|+|++|+..++++|++     -|++|.+..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  436 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD  436 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            8999999999999999999999975     689988865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.56  E-value=1.7e-07  Score=71.97  Aligned_cols=87  Identities=14%  Similarity=0.025  Sum_probs=73.7

Q ss_pred             HHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC---------HHHHHHHHHHHHHhh-----CCCChHH
Q psy16144         16 AEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF---------PDDAVVQYTQACRII-----GTSDLAL   74 (122)
Q Consensus        16 ~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l---------y~dAa~~ye~Aw~l~-----~~~~~~v   74 (122)
                      ..+..+  .+.+.|++++|.++++ +++.+|+++.    +|..+         |++|...|++|.++.     .+....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            334444  8889999999999999 9999999763    44422         999999999999983     3666788


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         75 HQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        75 gykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      .+.||..|...|++.+|+..++++++..
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999883

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.54  E-value=3.6e-07  Score=72.75  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch--HHHHhhC---------HHHHHHHHHHHHHhhC-CC-ChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA--TNIYNLF---------PDDAVVQYTQACRIIG-TS-DLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~--~kA~e~l---------y~dAa~~ye~Aw~l~~-~~-~~~vgykLA~~ylk~kr   87 (122)
                      ++.+.|+|++|+++|+ +.+..+..  ..++.++         +++|...|+++..-.. |. .+.+-+.+|.++.+.|+
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr  223 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN  223 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence            8888888888888888 77653221  2344433         9999999999985422 44 56789999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHKQIFEK  115 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~~il~k  115 (122)
                      .++|+++++++++.+|+ +.++.-+-+.
T Consensus       224 ~deA~~~l~~a~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          224 ESAAVALLEWLQTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence            99999999999999999 9888766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.53  E-value=1.6e-06  Score=65.26  Aligned_cols=82  Identities=13%  Similarity=0.059  Sum_probs=62.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhh--CCCCh----HHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRII--GTSDL----ALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~--~~~~~----~vgykLA   79 (122)
                      +|...|++++|.+.++ +++..+..      ..++..+         |++|..+|++|+++.  .++++    .+.+++|
T Consensus       124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg  203 (293)
T 2qfc_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA  203 (293)
T ss_dssp             HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence            7788899999999999 88765443      2333322         899999999998542  24433    5889999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      .+|.+.|+|.+|+..++++++..+
T Consensus       204 ~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          204 KALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999987754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.52  E-value=6e-07  Score=58.70  Aligned_cols=81  Identities=11%  Similarity=0.052  Sum_probs=66.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH------HHhhC---------HHHHHHHHHHHHHhhCCCC------hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN------IYNLF---------PDDAVVQYTQACRIIGTSD------LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k------A~e~l---------y~dAa~~ye~Aw~l~~~~~------~~vgykLA   79 (122)
                      +|...|++++|.+.++ +++..+....      ++..+         |++|...|++|+++. +..      ..+.+.+|
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~   96 (164)
T 3ro3_A           18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLG   96 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHH
Confidence            7888999999999999 9988776432      33312         999999999999985 332      56788999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      ..|...|++.+|++.++++++..+
T Consensus        97 ~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           97 NTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.51  E-value=5.7e-07  Score=58.81  Aligned_cols=83  Identities=8%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhhCCC-----ChHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRIIGTS-----DLALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~~~~-----~~~vgykLA~   80 (122)
                      +|...|++++|.++++ +++..++.      ..++..+         |++|...|++++++....     .+.+.+.||.
T Consensus        58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  137 (164)
T 3ro3_A           58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN  137 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence            8899999999999999 99887663      2333322         999999999999885221     1457889999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      .|...|++.+|++.++++++....
T Consensus       138 ~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          138 AYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.50  E-value=4.3e-07  Score=70.31  Aligned_cols=82  Identities=10%  Similarity=0.031  Sum_probs=70.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH------HHHhhC---------HHHHHHHHHHHHHh----hC-CCChHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT------NIYNLF---------PDDAVVQYTQACRI----IG-TSDLALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~------kA~e~l---------y~dAa~~ye~Aw~l----~~-~~~~~vgykLA~   80 (122)
                      +|...|++++|.+.++ +++..|...      .++..+         |++|..+|++|+++    .+ |..+.+.+.||.
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            8999999999999999 998866543      233322         99999999999995    34 777889999999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCC
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      +|.+.|++.+|+..++++++..+
T Consensus       273 ~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          273 IHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.50  E-value=4.2e-07  Score=69.20  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|+++ +|+++.+.+.+|.+|.+.|++.+|+..|+++++.+|+++++...
T Consensus        20 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A           20 YPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999988653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.50  E-value=2.5e-07  Score=70.71  Aligned_cols=84  Identities=17%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC--------HHHHHHHHHHHHHhhCCCC------hHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF--------PDDAVVQYTQACRIIGTSD------LALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l--------y~dAa~~ye~Aw~l~~~~~------~~vgykLA~   80 (122)
                      +|.+.|++++|.+.++ +++..+..      ..++..+        |++|..+|++|+++. +..      ..+..+||.
T Consensus        85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~  163 (307)
T 2ifu_A           85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVF-ENEERLRQAAELIGKASR  163 (307)
T ss_dssp             HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHH
Confidence            8889999999999999 99886532      2333322        899999999999985 433      567889999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCCCCH
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      +|.+.|+|.+|++.|+++++..|+.+
T Consensus       164 ~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          164 LLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999877543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.50  E-value=4.8e-07  Score=70.00  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=69.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch-------HHHHhhC---------HHHHHHHHHHHHHhhCCCCh------HHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA-------TNIYNLF---------PDDAVVQYTQACRIIGTSDL------ALHQKL   78 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~-------~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~------~vgykL   78 (122)
                      +|...|++++|.+.++ +++..+..       ..++..+         |++|..+|++|+++. +...      .+.+.|
T Consensus       152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l  230 (383)
T 3ulq_A          152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNI  230 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHH
Confidence            8889999999999999 99885543       2333322         999999999999985 4333      488999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHH-----hC-CCCHHHH
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMK-----AH-PSYPKVH  109 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~-----~~-P~ypkir  109 (122)
                      |.+|...|++.+|+..++++++     .+ |+.+.+.
T Consensus       231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            9999999999999999999999     45 6555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.49  E-value=1.9e-06  Score=63.30  Aligned_cols=72  Identities=11%  Similarity=0.116  Sum_probs=41.1

Q ss_pred             CCChHHHHHHHH-HHhhCcchHHHHhh-----------C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----ccc
Q psy16144         26 PWRWEPLSAGLR-KKQYISSATNIYNL-----------F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLR----MKR   87 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~kA~e~-----------l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk----~kr   87 (122)
                      .|++++|.++++ +++.+  ++.++..           .  +++|...|++|.+.   +++.+.+.||..|..    .++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KYAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CCccHHHHHHHHHHcCCCcccC
Confidence            566666666666 55554  3333331           1  55666666666655   255666666666666    666


Q ss_pred             HHHHHHHHHHHHHhC
Q psy16144         88 YAEAIDVSQTIMKAH  102 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~  102 (122)
                      +.+|+..++++++.+
T Consensus       130 ~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            666666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.48  E-value=4.6e-07  Score=66.88  Aligned_cols=57  Identities=12%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY----------AEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~----------~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++|...|++|.++ +|+++.+.+++|.+++..+++          ++||..|+++|+++|+++.+.-
T Consensus        18 feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~   84 (158)
T 1zu2_A           18 FEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence            99999999999999 899999999999999999886          5999999999999999997653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.46  E-value=3.5e-07  Score=69.13  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=71.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH----HHhhC---------HHHHHHHHHHHHHhhC-----CCChHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN----IYNLF---------PDDAVVQYTQACRIIG-----TSDLALHQKLASLL   82 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k----A~e~l---------y~dAa~~ye~Aw~l~~-----~~~~~vgykLA~~y   82 (122)
                      .+.+.|++++|.++++ +++.+|+++.    ++..+         |++|...|++|+++..     +..+.+.+.+|..|
T Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~   97 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL   97 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            7888999999999999 9999998753    33322         9999999999998841     34466889999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCC
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      ...|++.+|+..++++++..|..
T Consensus        98 ~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           98 KVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999988743

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.46  E-value=5.6e-07  Score=57.48  Aligned_cols=52  Identities=12%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      |++|...|+++++. .|+++.+.+.+|.+|...|++.+|+..|+++++.+|++
T Consensus        20 ~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           20 FDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            99999999999999 69999999999999999999999999999999999876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.45  E-value=4.5e-06  Score=62.83  Aligned_cols=87  Identities=8%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHH------Hh-----hC----HHHHHHHHHHHHHhhCCCC------hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNI------YN-----LF----PDDAVVQYTQACRIIGTSD------LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA------~e-----~l----y~dAa~~ye~Aw~l~~~~~------~~vgykLA   79 (122)
                      .+...|+|++|.+.++ +++..|.....      +.     +.    |++|..+|++|++.. +..      ..+.+.+|
T Consensus        84 ~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg  162 (293)
T 2qfc_A           84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHH
Confidence            7889999999999999 99887764322      11     11    999999999999874 332      45889999


Q ss_pred             HHHHhcccHHHHHHHHHHHH---HhCCCCHHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIM---KAHPSYPKVH  109 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL---~~~P~ypkir  109 (122)
                      .+|...|+|.+|+..+++++   +..|+.+...
T Consensus       163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence            99999999999999999999   6778766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.43  E-value=5.1e-07  Score=73.41  Aligned_cols=85  Identities=5%  Similarity=-0.049  Sum_probs=75.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh------h--C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN------L--F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e------~--l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      ++.+.|++++|.++|+ +++..|.+...+.      +  .  +++|...|++|++. .|+++.+...+|..+.+.|++.+
T Consensus       365 ~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~  443 (530)
T 2ooe_A          365 FARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNN  443 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhh
Confidence            6678899999999999 9999887655443      1  2  89999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHH
Q psy16144         91 AIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypk  107 (122)
                      |..++++++...|..|.
T Consensus       444 Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          444 TRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHHHHHHHSCCSCGG
T ss_pred             HHHHHHHHHhccCCCHH
Confidence            99999999999998887

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.42  E-value=4.3e-07  Score=68.50  Aligned_cols=83  Identities=14%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH------HHhh-------C--HHHHHHHHHHHHHhhC------CCChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN------IYNL-------F--PDDAVVQYTQACRIIG------TSDLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k------A~e~-------l--y~dAa~~ye~Aw~l~~------~~~~~vgykLA   79 (122)
                      +|...|++++|.++++ +++..++...      ++..       +  |++|..+|++|++...      +....+.++||
T Consensus       124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg  203 (293)
T 3u3w_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA  203 (293)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            7778888999999998 8886544222      2221       1  8899999999885421      22334678899


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      .+|.+.|+|.+|+..++++++..|.
T Consensus       204 ~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          204 KALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.41  E-value=1.5e-06  Score=67.43  Aligned_cols=83  Identities=10%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc------hHHHHhhC---------HHHHHHHHHHHHHh----hCCCChHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS------ATNIYNLF---------PDDAVVQYTQACRI----IGTSDLALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps------~~kA~e~l---------y~dAa~~ye~Aw~l----~~~~~~~vgykLA~~   81 (122)
                      +|...|++++|.++++ +++..+.      .+.++..+         |++|..+|++|+++    .+|..+.+.+.||.+
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            8999999999999999 9987542      12233312         99999999999993    257778899999999


Q ss_pred             HHhcccHHHHHHHHHHHHHhCCC
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      |.+.|++.+|++.++++++..+.
T Consensus       271 ~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          271 LCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.41  E-value=2.4e-06  Score=59.11  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=66.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhh------Cc-chHHHHhhC---------HHHHHHHHHHHHHhhCCC-ChH----HHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY------IS-SATNIYNLF---------PDDAVVQYTQACRIIGTS-DLA----LHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~------np-s~~kA~e~l---------y~dAa~~ye~Aw~l~~~~-~~~----vgykLA   79 (122)
                      +|...|++++|.++++ +++.      +| ....++..+         +++|...+++|+++.... ++.    +...||
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            8889999999999999 9888      33 222333322         999999999999874222 221    247899


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHP--SYPKVHKQIFE  114 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P--~ypkir~~il~  114 (122)
                      .+|...|++.+|++.++++++...  ..+.....++.
T Consensus       155 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  191 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMT  191 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999988755  33444444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.40  E-value=6.1e-07  Score=65.15  Aligned_cols=50  Identities=8%  Similarity=-0.017  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         53 PDDAVVQYTQACRIIGTSD------LALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~------~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      +++|...|++|+++. +..      ..+.+.||..|.+.|++.+|+..++++++..|
T Consensus       279 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          279 YEKAIDYHLKHLAIA-QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            555555555555442 211      22444555555555555555555555554444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.38  E-value=1.7e-06  Score=69.28  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++++|..+         |++|...|++|.++ +|+++.+...|+..+.+.+++.++
T Consensus       282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999999844         99999999999999 799999999999999999999987


Q ss_pred             HH
Q psy16144         92 ID   93 (122)
Q Consensus        92 I~   93 (122)
                      ..
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.38  E-value=8.9e-07  Score=61.33  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             HhcCCCChHHHHHHHH-HHh------hCcchHHHHhhC---------HHHHHHHHHHHHHhhC--C----CChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQ------YISSATNIYNLF---------PDDAVVQYTQACRIIG--T----SDLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~------~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~--~----~~~~vgykLA   79 (122)
                      +|...|++++|.++++ +++      ..|....++..+         |++|...|++|+++..  +    ....+.+.||
T Consensus        35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  114 (203)
T 3gw4_A           35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA  114 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            8889999999999999 998      445555555422         9999999999999831  2    2245688999


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      ..|...|++.+|+..++++++..+
T Consensus       115 ~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          115 TVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999997654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.38  E-value=7e-07  Score=68.50  Aligned_cols=82  Identities=10%  Similarity=0.095  Sum_probs=64.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH------HHhhC---------HHHHHHHHHHHHHhhCCCC------hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN------IYNLF---------PDDAVVQYTQACRIIGTSD------LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k------A~e~l---------y~dAa~~ye~Aw~l~~~~~------~~vgykLA   79 (122)
                      +|...|++++|.++++ +++..|....      ++..+         +++|...|++|.++. +..      ..+.+.||
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la  310 (411)
T 4a1s_A          232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA-VELGEREVEAQSCYSLG  310 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence            8888899999999999 8888776543      33322         889999999998884 433      56788889


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      ..|.+.|++.+|+..++++++..|+
T Consensus       311 ~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          311 NTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=2.3e-06  Score=56.70  Aligned_cols=58  Identities=10%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRII------GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~------~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      |..|+.-|+.|++..      ++..+.+...||++|.+.|++.+|+..++++++.+|+++.+..
T Consensus        21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A           21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            667777777776653      3567889999999999999999999999999999999998844

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.37  E-value=2.5e-06  Score=70.84  Aligned_cols=89  Identities=9%  Similarity=-0.059  Sum_probs=71.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHh----hCCCChHHH---H
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRI----IGTSDLALH---Q   76 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l----~~~~~~~vg---y   76 (122)
                      -.-..|+|++|+++++ +|+.        +|+-...+.-+         |++|...|++|++.    -+|++|.++   +
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            3346789999999999 9875        34434444322         99999999999854    368888886   5


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHh-----CCCCHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIMKA-----HPSYPKVHK  110 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL~~-----~P~ypkir~  110 (122)
                      +||..|...|+|++|+..++++|++     -|++|.++.
T Consensus       387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            8999999999999999999999986     589998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.35  E-value=1.2e-06  Score=66.06  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=63.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhhCCCC------hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRIIGTSD------LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~~~~~------~~vgykLA   79 (122)
                      +|...|++++|.++++ +++..|..      ..++..+         +++|...|++|+++. +..      +.+.+.||
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la  314 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELNDRIGEGRACWSLG  314 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHH
Confidence            7888899999999998 88877765      3343322         889999999998884 333      56788889


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      ..|.+.|++.+|+..++++++..+.
T Consensus       315 ~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          315 NAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.34  E-value=7.7e-06  Score=60.03  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             HhcC----CCChHHHHHHHH-HHhhCcchHHHHh-------h----C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         22 LYLL----PWRWEPLSAGLR-KKQYISSATNIYN-------L----F--PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        22 Lyi~----~gk~d~A~elL~-~l~~nps~~kA~e-------~----l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      +|.+    .|++++|.++++ +++.++.  .++.       .    .  +++|...|++|.+.   .++.+.+.||..|.
T Consensus       119 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~  193 (273)
T 1ouv_A          119 IYHDGKVVTRDFKKAVEYFTKACDLNDG--DGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYH  193 (273)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHhcCcH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHH
Confidence            5555    666666666666 6665532  2222       1    2  66666666666665   24566666666666


Q ss_pred             h----cccHHHHHHHHHHHHHhCC
Q psy16144         84 R----MKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        84 k----~kr~~~AI~vc~kVL~~~P  103 (122)
                      .    .+++.+|+..++++++.+|
T Consensus       194 ~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          194 HGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCccHHHHHHHHHHHHhCCC
Confidence            6    6666666666666666655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.30  E-value=3.3e-06  Score=65.45  Aligned_cols=88  Identities=14%  Similarity=-0.034  Sum_probs=70.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch-------HHHHhhC---------HHHHHHHHHHHHHhhCCC-----ChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA-------TNIYNLF---------PDDAVVQYTQACRIIGTS-----DLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~-------~kA~e~l---------y~dAa~~ye~Aw~l~~~~-----~~~vgykLA   79 (122)
                      +|...|++++|.++++ +++..+..       +.++..+         |++|..+|++|+++....     ...+.+.||
T Consensus       150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  229 (378)
T 3q15_A          150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA  229 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8899999999999999 99876542       2233222         999999999999985221     235778999


Q ss_pred             HHHHhcccHHHHHHHHHHHHH-----hCCCCHHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMK-----AHPSYPKVH  109 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~-----~~P~ypkir  109 (122)
                      .+|...|++.+|++.++++++     .+|..+.+.
T Consensus       230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            999999999999999999999     777665554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.28  E-value=3e-06  Score=63.79  Aligned_cols=85  Identities=11%  Similarity=-0.055  Sum_probs=66.7

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhC-------cchHHHHhhC---------HHHHHHHHHHHHHhhCCCC------h
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYI-------SSATNIYNLF---------PDDAVVQYTQACRIIGTSD------L   72 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~n-------ps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~------~   72 (122)
                      ++.+  +|...|++++|.++++ +++..       +....++.-+         |++|..+|++|.++. +..      +
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-~~~~~~~~~~  236 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-CRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTBCTTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHcCcHHHHH
Confidence            4445  8999999999999999 99532       2222233311         999999999999985 333      6


Q ss_pred             HHHHHHHHHHHhccc-HHHHHHHHHHHHHhCC
Q psy16144         73 ALHQKLASLLLRMKR-YAEAIDVSQTIMKAHP  103 (122)
Q Consensus        73 ~vgykLA~~ylk~kr-~~~AI~vc~kVL~~~P  103 (122)
                      .+.+.+|.+|.+.|+ +++|++.|++++....
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            789999999999995 7999999999997643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.28  E-value=4.2e-06  Score=60.85  Aligned_cols=53  Identities=9%  Similarity=-0.014  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGT--SDLALHQKLASLLLR----MKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~--~~~~vgykLA~~ylk----~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +++|...|++|.+. ++  +++.+.+.||..|..    .+++.+|+..++++++. |.+|.
T Consensus       105 ~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~  163 (212)
T 3rjv_A          105 VAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY  163 (212)
T ss_dssp             HHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred             HHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence            56666666666655 23  235666666666666    55666666666666655 33433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.25  E-value=8.2e-06  Score=67.27  Aligned_cols=98  Identities=12%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             hcCCCChHHHHHHHH-HHhh--------CcchHHHHhhC---------HHHHHHHHHHHHHh----hCCCChHHH---HH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQY--------ISSATNIYNLF---------PDDAVVQYTQACRI----IGTSDLALH---QK   77 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~--------nps~~kA~e~l---------y~dAa~~ye~Aw~l----~~~~~~~vg---yk   77 (122)
                      +-++|+|++|+++++ +|+.        +|+-...+.-+         |++|...|+++++.    -+|++|.+|   ++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            346799999999999 9865        33333333311         99999999999854    368889886   58


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHh-----CCCCHHHHH--HHHHHHHhcc
Q psy16144         78 LASLLLRMKRYAEAIDVSQTIMKA-----HPSYPKVHK--QIFEKAMVHL  120 (122)
Q Consensus        78 LA~~ylk~kr~~~AI~vc~kVL~~-----~P~ypkir~--~il~ka~~~l  120 (122)
                      ||..|...|++++|+..++++|++     -|++|.++.  .-|.-|+..+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999975     689998874  2255555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.22  E-value=1.2e-05  Score=58.35  Aligned_cols=80  Identities=8%  Similarity=-0.085  Sum_probs=69.1

Q ss_pred             HhcC----CCChHHHHHHHH-HHhhCcc--hHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         22 LYLL----PWRWEPLSAGLR-KKQYISS--ATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        22 Lyi~----~gk~d~A~elL~-~l~~nps--~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      +|..    .+++++|.++++ +++.+|+  .+.++..+             +++|...|++|.+.  +.++.+.+.||..
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~  171 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMM  171 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence            7777    899999999999 9999984  46666633             89999999999998  5678899999999


Q ss_pred             HHhcc------cHHHHHHHHHHHHHhCC
Q psy16144         82 LLRMK------RYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        82 ylk~k------r~~~AI~vc~kVL~~~P  103 (122)
                      |.+..      ++.+|+..++++.+..+
T Consensus       172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          172 FQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99763      89999999999998865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.22  E-value=4.9e-06  Score=70.66  Aligned_cols=88  Identities=9%  Similarity=0.024  Sum_probs=80.3

Q ss_pred             HhcCCC--ChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc---
Q psy16144         22 LYLLPW--RWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM---   85 (122)
Q Consensus        22 Lyi~~g--k~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~---   85 (122)
                      +.-+.|  ++++|.+.+. +++.+|.+..||.+.          +++|..+++++++. +|+|.++.+..++.+.+.   
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhccc
Confidence            666778  6699999999 999999999999854          89999999999999 899999999999999985   


Q ss_pred             -----------ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 -----------KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 -----------kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                                 +++.+|++.+++++..+|+++.++.
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~  230 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  230 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence                       7899999999999999999988864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.20  E-value=3.6e-06  Score=54.47  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         68 GTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        68 ~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+++.+.+.||.+|.+.|++.+|+..++++++.+|+++.++..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~   46 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH   46 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            69999999999999999999999999999999999999988653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.18  E-value=2.7e-05  Score=61.88  Aligned_cols=87  Identities=9%  Similarity=-0.044  Sum_probs=77.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH----Hhc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-----------PDDAVVQYTQACRIIGTSDLALHQKLASLL----LRM   85 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y----lk~   85 (122)
                      +.-.....++|.++.. +|..||++.-+|.+.           +++|...++.++.. +|++.++.+--+..+    .+.
T Consensus        42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-CcccHHHHHHHHHHHHHHHHhc
Confidence            4445555679999999 999999999999832           89999999999999 899999999999999    666


Q ss_pred             ---ccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         86 ---KRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        86 ---kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                         +++.+++++|.++|+.+|.+..++
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHH
Confidence               889999999999999999998884

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.17  E-value=2.4e-05  Score=63.21  Aligned_cols=88  Identities=9%  Similarity=0.024  Sum_probs=79.1

Q ss_pred             HhcCCC--ChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc---
Q psy16144         22 LYLLPW--RWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM---   85 (122)
Q Consensus        22 Lyi~~g--k~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~---   85 (122)
                      +.-+.|  .++++.+.+. +++.+|.+.-||.+.          ++++..++.++++. +|+|.++....++.+.+.   
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhhhc
Confidence            444455  4899999999 999999999999844          68999999999999 899999999999999988   


Q ss_pred             -----------ccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         86 -----------KRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        86 -----------kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                                 +++.++++.+.+++..+|++..++.
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence                       7899999999999999999999885

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.11  E-value=3.6e-05  Score=65.33  Aligned_cols=84  Identities=10%  Similarity=0.022  Sum_probs=65.3

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC-------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF-------------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      .....++|.+... +++.||++..+|.+.                   |++|...|+++.+. +|++..+.+--+.++.+
T Consensus        41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence            3334567788888 888888888888732                   67788888888888 78888888888888888


Q ss_pred             cc--cHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         85 MK--RYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        85 ~k--r~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .+  ++.+|++.|.++++.+|.+..++
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW  146 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCW  146 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccHH
Confidence            88  56888888888888888777665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.10  E-value=1.9e-05  Score=58.04  Aligned_cols=58  Identities=14%  Similarity=0.151  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGT-SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~-~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +++++..++...+...| ++....|.||..|.|.|+|.+|...|+++|+.+|+++.++.
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            78999999999998436 67899999999999999999999999999999999987753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.06  E-value=6.3e-05  Score=60.75  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=69.5

Q ss_pred             hcCCCChH-HHHHHHH-HHhhCcchHHHHhhC-------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         23 YLLPWRWE-PLSAGLR-KKQYISSATNIYNLF-------------------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        23 yi~~gk~d-~A~elL~-~l~~nps~~kA~e~l-------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      ..+.|.++ +|.++.. ++..||++.-+|.+-                   ++++...++.++.. +|.++.+.+--+.+
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW~hR~wl  117 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence            34566665 7888888 899999988888843                   35788888888888 78888888888888


Q ss_pred             HHhccc--HHHHHHHHHHHHHhCCCCHHHH
Q psy16144         82 LLRMKR--YAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        82 ylk~kr--~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      +.+.++  +.+++++|.++|+.+|.+.-++
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW  147 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERNFHCW  147 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCCHHHH
Confidence            888884  7888888999998888887774

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.06  E-value=3.2e-05  Score=63.03  Aligned_cols=87  Identities=8%  Similarity=-0.016  Sum_probs=79.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc-c-cH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM-K-RY   88 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~-k-r~   88 (122)
                      +....+..++|.+++. +|..||++.-+|.+.          ++++...++.++.. +|++..+.+--+.++.+. + ++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-nPKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-NLKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCCCh
Confidence            5556677889999999 999999999999943          99999999999999 899999999999999998 8 99


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q psy16144         89 AEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .++++.|.++|+.+|.+.-++
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW  162 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTW  162 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999998875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.03  E-value=1.5e-05  Score=60.82  Aligned_cols=83  Identities=18%  Similarity=0.060  Sum_probs=45.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----------hC----HHHHHHHHHHHHHhhC-------CCChHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----------LF----PDDAVVQYTQACRIIG-------TSDLALHQKL   78 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----------~l----y~dAa~~ye~Aw~l~~-------~~~~~vgykL   78 (122)
                      +|...|++++|.+.++ +++..|.....+.           +.    |++|...|+++.++..       |....+...|
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  141 (373)
T 1hz4_A           62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR  141 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence            5555566666666666 6665554322111           11    6666666666666531       1122344456


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         79 ASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        79 A~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      |..|...|++++|++.++++++..|.
T Consensus       142 a~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          142 AQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            66666666666666666666666654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.03  E-value=3.3e-06  Score=67.19  Aligned_cols=80  Identities=10%  Similarity=-0.142  Sum_probs=66.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhh-----C----HHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNL-----F----PDDAVVQYTQACRIIGTSD-LALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~-----l----y~dAa~~ye~Aw~l~~~~~-~~vgykLA~~ylk~kr~~~   90 (122)
                      ++++.|+|++|.++|. ++..+|+.. +..-     +    |.+|...|+.+.....|.. ..+.|.||..+...|++.+
T Consensus       111 ~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e  189 (282)
T 4f3v_A          111 CEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE  189 (282)
T ss_dssp             HHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH
Confidence            8889999999999999 999999876 4431     1    9999999998876632211 3589999999999999999


Q ss_pred             HHHHHHHHHHhC
Q psy16144         91 AIDVSQTIMKAH  102 (122)
Q Consensus        91 AI~vc~kVL~~~  102 (122)
                      |++.+++++...
T Consensus       190 Al~~l~~a~~g~  201 (282)
T 4f3v_A          190 AERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHTST
T ss_pred             HHHHHHHHhcCC
Confidence            999999999544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.96  E-value=6.7e-05  Score=59.54  Aligned_cols=82  Identities=9%  Similarity=0.020  Sum_probs=76.5

Q ss_pred             CChHHHHHHHH-HHhhCcchHHHHhhC---------HH--HHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc------H
Q psy16144         27 WRWEPLSAGLR-KKQYISSATNIYNLF---------PD--DAVVQYTQACRIIGTSDLALHQKLASLLLRMKR------Y   88 (122)
Q Consensus        27 gk~d~A~elL~-~l~~nps~~kA~e~l---------y~--dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr------~   88 (122)
                      ++++++.+.+. +++.+|.+.-+|.+.         ++  ++...++++++. +|+|..+...-++++.+.++      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-DLKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccccchhhhH
Confidence            78999999999 999999999999844         67  999999999999 89999999999999999998      9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q psy16144         89 AEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        89 ~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .++++.+.+.+..+|++..++
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW  223 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTW  223 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCccHH
Confidence            999999999999999999886

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.87  E-value=0.00012  Score=55.76  Aligned_cols=82  Identities=10%  Similarity=-0.019  Sum_probs=65.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCc--------chHHHHhhC---------HHHHHHHHHHHHHhhCCC----ChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYIS--------SATNIYNLF---------PDDAVVQYTQACRIIGTS----DLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~np--------s~~kA~e~l---------y~dAa~~ye~Aw~l~~~~----~~~vgykLA   79 (122)
                      ++...|++++|.++++ +++..+        ....++..+         +++|...|+++++.....    ...+.+.||
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            8889999999999999 988763        333333311         999999999999995322    235678899


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      ..+...|++.+|++.+++++...+
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999998743

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.84  E-value=0.0001  Score=59.27  Aligned_cols=78  Identities=12%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             HhcCCC---ChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         22 LYLLPW---RWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        22 Lyi~~g---k~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      +|.+.|   ++++|.++++ +++.  +++.++..+             +++|...|++|.+.   .++.+.+.||..|.+
T Consensus       337 ~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          337 IYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ---GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHc
Confidence            555445   6788888888 7765  345555422             77888888888876   258888888888888


Q ss_pred             ----cccHHHHHHHHHHHHHhCCC
Q psy16144         85 ----MKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        85 ----~kr~~~AI~vc~kVL~~~P~  104 (122)
                          .+++++|+..|+++++..|+
T Consensus       412 g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          412 GLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCC
Confidence                78888888888888888854

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.81  E-value=4.9e-05  Score=61.45  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             hHHHHHHHH-HHhhCcc--hHHHHhhC--------------HHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhc-ccHH
Q psy16144         29 WEPLSAGLR-KKQYISS--ATNIYNLF--------------PDDAVVQYTQACRIIGTS-DLALHQKLASLLLRM-KRYA   89 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps--~~kA~e~l--------------y~dAa~~ye~Aw~l~~~~-~~~vgykLA~~ylk~-kr~~   89 (122)
                      ...|...++ +++.+|+  ...||..+              .+.|..+|++|+++ +|+ ++.+-+-.|..|... |++.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHH
Confidence            367889999 9999999  67788844              88999999999999 686 599999999999995 9999


Q ss_pred             HHHHHHHHHHHhCCCC-HH
Q psy16144         90 EAIDVSQTIMKAHPSY-PK  107 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~y-pk  107 (122)
                      +|...+++||+..|.. |.
T Consensus       258 ~a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHHcCCCCCCCC
Confidence            9999999999988864 44

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.78  E-value=9.9e-05  Score=60.15  Aligned_cols=81  Identities=4%  Similarity=-0.130  Sum_probs=64.6

Q ss_pred             ChHHHHHHHH-HHhhCcchHHHHhhC---------HH--------HHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc--
Q psy16144         28 RWEPLSAGLR-KKQYISSATNIYNLF---------PD--------DAVVQYTQACRIIGTSDLALHQKLASLLLRMKR--   87 (122)
Q Consensus        28 k~d~A~elL~-~l~~nps~~kA~e~l---------y~--------dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr--   87 (122)
                      +++++.+++. +++.+|.+.-||.+.         ++        ++...++++++. +|+|.++....++++.+.++  
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHTTSTTCC
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccccc
Confidence            6777777777 777777777777743         44        788888888888 78888888888888888876  


Q ss_pred             -----HHHHHHHHHHHHHhCCCCHHHH
Q psy16144         88 -----YAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        88 -----~~~AI~vc~kVL~~~P~ypkir  109 (122)
                           +.++++.+.+.+..+|++.-++
T Consensus       219 ~~~~~~~eELe~~~~aI~~~P~n~SaW  245 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLIPHNVSAW  245 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence                 6788888888888888888776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.73  E-value=7.2e-05  Score=49.38  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             HhcCCCC--hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHH
Q psy16144         22 LYLLPWR--WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLAL   74 (122)
Q Consensus        22 Lyi~~gk--~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~v   74 (122)
                      +|.+.|.  .++|..+|+ +|+.+|+|++|+.++         |++|+..|+++++. +|.+|..
T Consensus        16 l~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-~p~~~~~   79 (93)
T 3bee_A           16 LYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-NDPNLDR   79 (93)
T ss_dssp             HHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC-CCTTCCH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence            4444444  899999999 999999999999866         99999999999999 5666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.68  E-value=8.4e-05  Score=59.80  Aligned_cols=86  Identities=15%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCc------chH-----HHHhhC------HHHHHHHHHHHHHhhCCC--ChHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYIS------SAT-----NIYNLF------PDDAVVQYTQACRIIGTS--DLALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~np------s~~-----kA~e~l------y~dAa~~ye~Aw~l~~~~--~~~vgykLA~~   81 (122)
                      +|++.|+.|.|.+.|+ ..+.+|      +..     .+|-.+      +.+|...|+.+.+. .|+  ++...++   +
T Consensus       145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln---~  220 (310)
T 3mv2_B          145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLN---L  220 (310)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHH---H
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHH---H
Confidence            9999999999999999 999998      222     233333      99999999998665 354  2344444   8


Q ss_pred             HHhcccHHHHHHHHHHHHHhC----------CCCHHHHHH
Q psy16144         82 LLRMKRYAEAIDVSQTIMKAH----------PSYPKVHKQ  111 (122)
Q Consensus        82 ylk~kr~~~AI~vc~kVL~~~----------P~ypkir~~  111 (122)
                      +++.|++.+|....+++++.+          |++|..-..
T Consensus       221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence            999999999999999998874          778877633

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.66  E-value=0.00024  Score=57.49  Aligned_cols=75  Identities=9%  Similarity=-0.027  Sum_probs=45.5

Q ss_pred             HhcCCC---ChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHH-H-
Q psy16144         22 LYLLPW---RWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASL-L-   82 (122)
Q Consensus        22 Lyi~~g---k~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~-y-   82 (122)
                      +|.+.|   ++++|.+.++ +.+.+|..+.++..+             +++|...|++|.    |.++.+.+.||.. | 
T Consensus       185 ~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          185 VYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHH
T ss_pred             HHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHh
Confidence            555566   6666666666 666666655543211             566666666665    5566666666666 3 


Q ss_pred             -HhcccHHHHHHHHHHHHH
Q psy16144         83 -LRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        83 -lk~kr~~~AI~vc~kVL~  100 (122)
                       ...+++.+|+..++++.+
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence             355666666666666654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.66  E-value=0.00032  Score=58.93  Aligned_cols=88  Identities=9%  Similarity=-0.039  Sum_probs=67.7

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhC--------cchHHHHhhC---------HHHHHHHHHHHHHhh----CCC
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYI--------SSATNIYNLF---------PDDAVVQYTQACRII----GTS   70 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~n--------ps~~kA~e~l---------y~dAa~~ye~Aw~l~----~~~   70 (122)
                      ..-++.|  +|..+|+|++|+++++ +|+.-        |+-...+.-+         |++|...|++|++..    +|+
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344555  8899999999999999 88753        2222222211         999999999998642    788


Q ss_pred             ChHHHH---HHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         71 DLALHQ---KLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        71 ~~~vgy---kLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      +|.+.-   .|+.+++..++|.+|+.+|+++.+..
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888764   89999999999999999999876543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.65  E-value=0.00057  Score=46.83  Aligned_cols=76  Identities=14%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh---
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR---   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk---   84 (122)
                      +|.+.+.+++|.++++ +.+.  +++.|+..+             +++|...|++|.+.   .++.+.+.||..|..   
T Consensus        34 ~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           34 VSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSS
T ss_pred             HHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHCCCC
Confidence            7778788899999999 7765  445555522             88999999999887   478999999999999   


Q ss_pred             -cccHHHHHHHHHHHHHhC
Q psy16144         85 -MKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        85 -~kr~~~AI~vc~kVL~~~  102 (122)
                       .+++.+|+..++++.+..
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHCC
Confidence             899999999999998874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.57  E-value=0.00043  Score=57.16  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +++|...+++|..+ +|+ .....-||..+.-.|++++|++.+.+++..+|..|.
T Consensus       293 ~d~A~~~l~rAl~L-n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          293 TDESYQAINTGIDL-EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            78889999999999 654 555678899999999999999999999999996653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.56  E-value=0.00045  Score=55.89  Aligned_cols=76  Identities=7%  Similarity=-0.132  Sum_probs=58.7

Q ss_pred             CChHHHHHHHH-HHhhCcchHHHHhhC------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc----ccHH
Q psy16144         27 WRWEPLSAGLR-KKQYISSATNIYNLF------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM----KRYA   89 (122)
Q Consensus        27 gk~d~A~elL~-~l~~nps~~kA~e~l------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~----kr~~   89 (122)
                      +++++|.++++ +.   |+++.++..+            +++|...|++|.+.   .++.+.+.||..|...    +++.
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~~Lg~~y~~G~g~~~d~~  304 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAELLLGKLYYEGKWVPADAK  304 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            68889999998 76   6777776622            78888899888866   3788888899888843    2888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +|+..++++.   |++|.....
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~  323 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYY  323 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHH
Confidence            8888888888   777776543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00033  Score=54.00  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----------hC----HHHHHHHHHHHHHhhCCCC-----hHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----------LF----PDDAVVQYTQACRIIGTSD-----LALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----------~l----y~dAa~~ye~Aw~l~~~~~-----~~vgykLA~   80 (122)
                      +|.+.|++++|.++++ +++..++..++..           +.    ++.|...|+++........     ..+..+||.
T Consensus        64 ~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~  143 (434)
T 4b4t_Q           64 LYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT  143 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            8888899999999999 8887776555432           11    8888888888877642221     456778888


Q ss_pred             HHHhcccHHHHHHHHHHHHHh
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      .|...|+|.+|+.++++++..
T Consensus       144 ~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q          144 LHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHccChHHHHHHHHHHHHH
Confidence            888888888888888888765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.45  E-value=0.0016  Score=52.22  Aligned_cols=76  Identities=16%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             HhcCC-----CChHHHHHHHH-HHhhCcchHHHHhhC------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         22 LYLLP-----WRWEPLSAGLR-KKQYISSATNIYNLF------------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        22 Lyi~~-----gk~d~A~elL~-~l~~nps~~kA~e~l------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      +|...     +++++|.+.++ +++.++  +.++..+            +++|...|++|.+.   .++.+.+.||..|.
T Consensus       300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~  374 (490)
T 2xm6_A          300 LYDKGAEGVAKNREQAISWYTKSAEQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALL  374 (490)
T ss_dssp             HHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHH
Confidence            55554     77888888888 776543  3444322            67788888888876   36888888888888


Q ss_pred             h----cccHHHHHHHHHHHHHhC
Q psy16144         84 R----MKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        84 k----~kr~~~AI~vc~kVL~~~  102 (122)
                      .    .+++.+|+..++++++..
T Consensus       375 ~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          375 QGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCC
Confidence            8    788888888888887754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.36  E-value=0.0018  Score=44.25  Aligned_cols=78  Identities=6%  Similarity=-0.135  Sum_probs=62.0

Q ss_pred             CChHHHHHHHH-HHhhCcchH-HHHhhC----HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cccHHHHHHHHH
Q psy16144         27 WRWEPLSAGLR-KKQYISSAT-NIYNLF----PDDAVVQYTQACRIIGTSDLALHQKLASLLLR----MKRYAEAIDVSQ   96 (122)
Q Consensus        27 gk~d~A~elL~-~l~~nps~~-kA~e~l----y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk----~kr~~~AI~vc~   96 (122)
                      +++++|.++++ +.+.+...+ .+.-|.    +++|...|++|.+.   .++.+.+.||..|..    .+++.+|+..++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~   85 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS   85 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            46899999999 777654322 222233    78899999999987   479999999999999    899999999999


Q ss_pred             HHHHhCCCCHHHH
Q psy16144         97 TIMKAHPSYPKVH  109 (122)
Q Consensus        97 kVL~~~P~ypkir  109 (122)
                      ++.+.  .+|...
T Consensus        86 ~Aa~~--g~~~a~   96 (138)
T 1klx_A           86 KACGL--NDQDGC   96 (138)
T ss_dssp             HHHHT--TCHHHH
T ss_pred             HHHcC--CCHHHH
Confidence            99876  455543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.10  E-value=0.0023  Score=61.13  Aligned_cols=67  Identities=21%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh----hC--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN----LF--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e----~l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      ++++.|.|++|.++++ +-.    ..+|.+    .+  +++|...+++      .++|.+.+.||..+++.|++.|||+.
T Consensus      1058 Iai~lglyEEAf~IYkKa~~----~~~A~~VLie~i~nldrAiE~Aer------vn~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFDV----NTSAVQVLIEHIGNLDRAYEFAER------CNEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcCC----HHHHHHHHHHHHhhHHHHHHHHHh------cCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            7888899999988888 732    122211    11  3444333332      35577777777777777777777776


Q ss_pred             HHHH
Q psy16144         95 SQTI   98 (122)
Q Consensus        95 c~kV   98 (122)
                      |.++
T Consensus      1128 YiKA 1131 (1630)
T 1xi4_A         1128 YIKA 1131 (1630)
T ss_pred             HHhc
Confidence            6553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.08  E-value=0.0014  Score=46.61  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGT-SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~-~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      -+.++..++...+-.+| ..-...|-||..+.|.|+|.+|...|+.+|+.+|+++.+.
T Consensus        54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            45588888887776324 5668899999999999999999999999999999998774

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.06  E-value=0.00059  Score=57.58  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMV  118 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~  118 (122)
                      |++|..+|.++         +-..+||.+|.+.|+|.+|++.++++     ++|+.++++.+-|..
T Consensus       138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            88888888876         45779999999999999999999999     589999998877653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.04  E-value=0.0026  Score=41.57  Aligned_cols=57  Identities=5%  Similarity=0.058  Sum_probs=47.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCc-------chHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYIS-------SATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~np-------s~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA   79 (122)
                      .+.+.|+|+.|..-++ +++..+       +....++.+         +++|...|++|+++ +|+++.+..+++
T Consensus        14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~n~~   87 (104)
T 2v5f_A           14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEHQRANGNLK   87 (104)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHhhHH
Confidence            6778899999999999 988742       344555533         99999999999999 799999988887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.02  E-value=0.0066  Score=48.68  Aligned_cols=98  Identities=10%  Similarity=-0.059  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHH-HHhhCcc--hH-HHHh---hC--HHHHHHHHHHHHHhh---------CCCC
Q psy16144         10 QIIQTIAEWHFLLYLLPWRWEPLSAGLR-KKQYISS--AT-NIYN---LF--PDDAVVQYTQACRII---------GTSD   71 (122)
Q Consensus        10 ~~~~~~~~~~~LLyi~~gk~d~A~elL~-~l~~nps--~~-kA~e---~l--y~dAa~~ye~Aw~l~---------~~~~   71 (122)
                      .++-.++|....+....+++.+|..+|+ ..+..|+  .+ .-|.   .+  |++|...++.+.+.-         +|+|
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            3344445554445555669999999999 9888886  21 2222   22  999999999666551         4889


Q ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         72 LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        72 ~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      |.+..+++.+..-.|+  +|.+..+++.+.+|++|-|.
T Consensus       255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            9999899877777887  89999999999999999885

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.00  E-value=0.0012  Score=49.33  Aligned_cols=75  Identities=15%  Similarity=0.053  Sum_probs=53.9

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHH---------HhhC---------HHHHHHHHHHHHHhhC--CCCh---------
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNI---------YNLF---------PDDAVVQYTQACRIIG--TSDL---------   72 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA---------~e~l---------y~dAa~~ye~Aw~l~~--~~~~---------   72 (122)
                      .+..|.|+.|+-+.. ++....+++.+         ..++         |..|...|++|+.+.+  ++++         
T Consensus        30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~  109 (167)
T 3ffl_A           30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS  109 (167)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            445699999998888 66554443331         1111         9999999999977654  1111         


Q ss_pred             -------------HHHHHHHHHHHhcccHHHHHHHHHH
Q psy16144         73 -------------ALHQKLASLLLRMKRYAEAIDVSQT   97 (122)
Q Consensus        73 -------------~vgykLA~~ylk~kr~~~AI~vc~k   97 (122)
                                   ++-|++|-+|++.|++.+||.+.+.
T Consensus       110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                         6889999999999999999995443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.018  Score=44.18  Aligned_cols=91  Identities=8%  Similarity=0.049  Sum_probs=69.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch------HHHHhhC---------HHHHHHHHHHHHHhhCCCC-----hHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA------TNIYNLF---------PDDAVVQYTQACRIIGTSD-----LALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~------~kA~e~l---------y~dAa~~ye~Aw~l~~~~~-----~~vgykLA~   80 (122)
                      ++...|.+++|.++++ ++...++.      .+.+..+         |.+|...++++...+...+     ..+...++.
T Consensus       104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  183 (434)
T 4b4t_Q          104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK  183 (434)
T ss_dssp             HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            7778899999999999 88765542      2222211         9999999999988754333     468899999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCC---CCHHHHHHH
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHP---SYPKVHKQI  112 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P---~ypkir~~i  112 (122)
                      +|...|+|.+|...+++++...|   +.+.+...+
T Consensus       184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  218 (434)
T 4b4t_Q          184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL  218 (434)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence            99999999999999999998754   344555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.85  E-value=0.0065  Score=50.19  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHh----hCCCChHH---HHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRI----IGTSDLAL---HQKLASLLLRMKRYAEAIDVSQTIMKA-----HPSYPKVHKQIF  113 (122)
Q Consensus        53 y~dAa~~ye~Aw~l----~~~~~~~v---gykLA~~ylk~kr~~~AI~vc~kVL~~-----~P~ypkir~~il  113 (122)
                      |++|...|+++++.    -+|++|.+   ..+||..|...|+|++|+..|+++|++     .|++|.+-....
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            89999999999974    36778766   568999999999999999999999976     578888765443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.67  E-value=0.01  Score=47.82  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhCCCC-HHH
Q psy16144         53 PDDAVVQYTQACRIIGTS--DLALHQKLASLLLR-----MKRYAEAIDVSQTIMKAHPSY-PKV  108 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~--~~~vgykLA~~ylk-----~kr~~~AI~vc~kVL~~~P~y-pki  108 (122)
                      -.+|....++|+++ +|+  +.++..-||..|.+     .|+.++|...++++|+++|+. +.+
T Consensus       179 l~~A~a~lerAleL-DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~  241 (301)
T 3u64_A          179 VHAAVMMLERACDL-WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH  241 (301)
T ss_dssp             HHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH
T ss_pred             HHHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH
Confidence            88999999999999 899  78899999999999     599999999999999999975 443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.62  E-value=0.0036  Score=59.76  Aligned_cols=69  Identities=10%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHH
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV   94 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~v   94 (122)
                      ..|.++.|.++.. +     +.+.+|.-+         ++||+.+|++|      +|++..+++|..+.+.|+|++||..
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            5666777777666 5     335555522         99999999886      7899999999999999999999999


Q ss_pred             HHHHHHhCCC
Q psy16144         95 SQTIMKAHPS  104 (122)
Q Consensus        95 c~kVL~~~P~  104 (122)
                      +..+.+..|+
T Consensus      1157 L~mArk~~~e 1166 (1630)
T 1xi4_A         1157 LQMARKKARE 1166 (1630)
T ss_pred             HHHHHhhccc
Confidence            9988888753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.45  E-value=0.015  Score=42.44  Aligned_cols=57  Identities=12%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      -+.++..++...+-+..+.-.-.|-||..+-|.|+|.+|...|+.+|+..|++..++
T Consensus        58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            568889999988864336778899999999999999999999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.42  E-value=0.012  Score=49.60  Aligned_cols=42  Identities=7%  Similarity=0.071  Sum_probs=34.7

Q ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        71 ~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      +|.-.-.|...|.+.|++.|||..++++|..+|.+-.+..+.
T Consensus       206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel  247 (449)
T 1b89_A          206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL  247 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            344455677899999999999999999999999988777654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.39  E-value=0.0098  Score=42.88  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGT-SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~-~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      ...++..++...+-+ | ..-.-.|-||..+-|.|+|.+|...|+.+|+..|++..+.
T Consensus        59 ~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           59 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            678899999988874 5 5678899999999999999999999999999999998774

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.83  E-value=0.063  Score=46.77  Aligned_cols=90  Identities=10%  Similarity=0.040  Sum_probs=60.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhh-----------Cc-----------chHHHHhhC---------HHHHHHHHHHHHHhhCC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQY-----------IS-----------SATNIYNLF---------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~-----------np-----------s~~kA~e~l---------y~dAa~~ye~Aw~l~~~   69 (122)
                      +.-+.|+++.|.++++ +++.           +|           +++..|-..         .+.|...|++|.+...+
T Consensus       387 ~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~  466 (679)
T 4e6h_A          387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL  466 (679)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence            6667788888888888 7764           24           244455422         67788888888876323


Q ss_pred             CChHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         70 SDLALHQKLASLLLRMKR-YAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        70 ~~~~vgykLA~~ylk~kr-~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      ..+.+....|..-.+.++ +..|-.++++.|+..|+.|.++..
T Consensus       467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence            345566565655555544 788888888888888888877643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.80  E-value=0.018  Score=47.14  Aligned_cols=62  Identities=10%  Similarity=0.033  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHh----hCCCChHH---HHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRI----IGTSDLAL---HQKLASLLLRMKRYAEAIDVSQTIMKA-----HPSYPKVHKQIFE  114 (122)
Q Consensus        53 y~dAa~~ye~Aw~l----~~~~~~~v---gykLA~~ylk~kr~~~AI~vc~kVL~~-----~P~ypkir~~il~  114 (122)
                      |++|...|+++++.    -+|++|.+   ..+||..|...|+|.+|+..|+++|+.     .|++|.+-.....
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            99999999999864    35677654   678999999999999999999999976     4788987655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.38  E-value=0.035  Score=45.73  Aligned_cols=56  Identities=13%  Similarity=-0.017  Sum_probs=44.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      .++-.|++++|...++ ++..||+ ..+|..+         +++|+..|++|..+ +|.+++  |.+..|
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-~P~~~t--~~~~~~  351 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL-RPGANT--LYWIEN  351 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCSHHH--HHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcCh--HHHHhC
Confidence            4555699999999999 9999997 4454422         99999999999999 698763  444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.62  E-value=0.18  Score=43.96  Aligned_cols=84  Identities=7%  Similarity=-0.119  Sum_probs=70.5

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc---HHHHHHHH
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR---YAEAIDVS   95 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr---~~~AI~vc   95 (122)
                      .++-...|. .+..||.+...|..+         ++.|...|++++.. -|..+....+.+..-++.|.   +..+..+|
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            455566778 999999999999844         78899999999999 69999999999999999999   99999999


Q ss_pred             HHHHHhCC--CCHHHHHHHH
Q psy16144         96 QTIMKAHP--SYPKVHKQIF  113 (122)
Q Consensus        96 ~kVL~~~P--~ypkir~~il  113 (122)
                      ++.|...|  .+++++..=+
T Consensus       127 eRal~~~~~~~sv~LW~~Yl  146 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYI  146 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHH
Confidence            99999994  5777766544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.53  E-value=0.49  Score=34.26  Aligned_cols=49  Identities=12%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK---RYAEAIDVSQTIMKAH  102 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k---r~~~AI~vc~kVL~~~  102 (122)
                      ...+...|+.+... ++.++.+-|++|.++.+++   ...++|.+++++++.+
T Consensus        14 l~~~~~~y~~e~~~-~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~   65 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG   65 (152)
T ss_dssp             HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            45677889999887 6889999999999999999   7779999999999988

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.50  E-value=0.14  Score=42.45  Aligned_cols=72  Identities=17%  Similarity=-0.027  Sum_probs=41.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhC-------CCChHHH---------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIG-------TSDLALH---------   75 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~-------~~~~~vg---------   75 (122)
                      ++++.|++++|.++.+ .     +....|+.+         ++.|+.+|.++=.+.+       ..++.-.         
T Consensus       661 ~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            5666677777777655 3     234445422         7777777777522210       1222221         


Q ss_pred             ---HHHHH-HHHhcccHHHHHHHHHHH
Q psy16144         76 ---QKLAS-LLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        76 ---ykLA~-~ylk~kr~~~AI~vc~kV   98 (122)
                         ++.|+ +|++.|++++|+++|.+.
T Consensus       736 ~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          736 TGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence               22355 677888888888888754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.16  E-value=0.69  Score=38.34  Aligned_cols=83  Identities=11%  Similarity=-0.042  Sum_probs=67.2

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhh--CcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQY--ISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~--nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      .+..|  .|.+.|++++|.++|+ ..+.  .|+ ...|.-+         .++|...|+.-.+.+-.-|......|-..|
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            35555  8999999999999999 7664  343 4455522         999999999998886666788888899999


Q ss_pred             HhcccHHHHHHHHHHHHH
Q psy16144         83 LRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~  100 (122)
                      .+.|+.++|.+++++.-+
T Consensus       186 ~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHH
Confidence            999999999999998654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.38  E-value=1.4  Score=36.25  Aligned_cols=91  Identities=8%  Similarity=-0.041  Sum_probs=66.7

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhh-----------------------------------------C
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNL-----------------------------------------F   52 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~-----------------------------------------l   52 (122)
                      -|.+.  .+.+.|+.+.|.+.+. ++.. |.+..-|..                                         +
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            36656  6778899999999999 9998 876543310                                         0


Q ss_pred             --------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 --------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMK-RYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 --------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~k-r~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                              .+.|-..|++| .. .+....+....|..-...+ ..+.|..+++..++..|+.|..+.
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence                    45577788888 44 2335667777676665556 489999999999999999987643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.17  E-value=3  Score=34.49  Aligned_cols=79  Identities=11%  Similarity=-0.070  Sum_probs=55.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhC--cchHHHHhhC------------------HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYI--SSATNIYNLF------------------PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~n--ps~~kA~e~l------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      .+.+.|+.++|.++|+ ..+..  |+ ...|.-+                  .++|...|+.-.+.+-+-|......|-.
T Consensus        35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~  113 (501)
T 4g26_A           35 MCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR  113 (501)
T ss_dssp             HTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            8899999999999999 66542  33 3333311                  4667777777666644446666777777


Q ss_pred             HHHhcccHHHHHHHHHHHHHh
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKA  101 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~  101 (122)
                      .|.+.|+.++|.+++++..+.
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~  134 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAF  134 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHHHc
Confidence            888888888888888777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.82  E-value=0.4  Score=33.82  Aligned_cols=27  Identities=11%  Similarity=-0.128  Sum_probs=12.6

Q ss_pred             hcCCCChHHHHHHHH-HHhhCcchHHHH
Q psy16144         23 YLLPWRWEPLSAGLR-KKQYISSATNIY   49 (122)
Q Consensus        23 yi~~gk~d~A~elL~-~l~~nps~~kA~   49 (122)
                      +.+.|+|++|..+++ +|+..|++..|.
T Consensus        84 ~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           84 NYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            334444444444444 444444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.61  E-value=1.4  Score=36.31  Aligned_cols=53  Identities=6%  Similarity=-0.171  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         56 AVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        56 Aa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      ....|++|+.. .|.++.+.+..|.-+...|+.++|.+++++++.. |....++.
T Consensus       198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~  250 (493)
T 2uy1_A          198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL  250 (493)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH
Confidence            45689999998 5999999999999999999999999999999999 98876653

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=89.39  E-value=3.9  Score=33.01  Aligned_cols=83  Identities=11%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch--------HHHHh-------hC----------------HHHHHHHHHHHHHhhCC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA--------TNIYN-------LF----------------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~--------~kA~e-------~l----------------y~dAa~~ye~Aw~l~~~   69 (122)
                      =+...|||.+|.+.|+ .|..-|-.        ..+.+       |.                .++-.++.|.|-=++..
T Consensus       111 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c  190 (320)
T 3mkr_B          111 QLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHS  190 (320)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTS
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhccC
Confidence            4567899999999999 88766521        12222       22                13445556666555544


Q ss_pred             CChHHHHHHHH-----HHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         70 SDLALHQKLAS-----LLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        70 ~~~~vgykLA~-----~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                      +--.+.--|+-     .-.|.|+|.-|...+++.|+..|+
T Consensus       191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            44444433332     356999999999999999999985

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.98  E-value=2.1  Score=34.23  Aligned_cols=92  Identities=10%  Similarity=0.013  Sum_probs=62.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhcCCCChHHHHHHHH-HHhhCcchHHH------Hh-----------------------hC-
Q psy16144          4 LSVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLR-KKQYISSATNI------YN-----------------------LF-   52 (122)
Q Consensus         4 ~~~~~~~~~~~~~~~~~LLyi~~gk~d~A~elL~-~l~~nps~~kA------~e-----------------------~l-   52 (122)
                      ..||..+.-+.+++..-  ....|+.+.|.+.|+ ++....+.+-+      |.                       .. 
T Consensus       108 ~~~D~~~f~~l~~~~~~--~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g  185 (388)
T 2ff4_A          108 NTCDLGRFVAEKTAGVH--AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG  185 (388)
T ss_dssp             GGBHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            34565555444443322  123577888888888 88776542111      10                       00 


Q ss_pred             -HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         53 -PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        53 -y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                       +.+|+...+.+... +|-+..+...|-.+|.+.|+..+|+++|++.
T Consensus       186 ~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          186 RASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             78888888888888 7888888888888899999999998888764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=88.47  E-value=1.9  Score=36.36  Aligned_cols=60  Identities=15%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      +..|...|++|..+ +|++.....-||....-.|+..+|+=-|-+.|.....+|..+..+.
T Consensus       168 ~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~  227 (497)
T 1ya0_A          168 TSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence            89999999999999 7999999999999999999999999999999988878999987664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.34  E-value=0.99  Score=33.36  Aligned_cols=49  Identities=12%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChH---------HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLA---------LHQKLASLLLRMKRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~---------vgykLA~~ylk~kr~~~AI~vc~kVL~~~  102 (122)
                      |+.|+.....+..++ ++++.         +.+-+|..+...|.|..|+..|+++|.+.
T Consensus        36 Y~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           36 HSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            999999999999996 55555         78889999999999999999999987553

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=85.42  E-value=7.3  Score=31.52  Aligned_cols=97  Identities=15%  Similarity=0.034  Sum_probs=56.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcc--------hHHHHhhC-----HHHH---------------HHHHHHHHHhhCCCCh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISS--------ATNIYNLF-----PDDA---------------VVQYTQACRIIGTSDL   72 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps--------~~kA~e~l-----y~dA---------------a~~ye~Aw~l~~~~~~   72 (122)
                      =+...|||++|.+.|+ .|..-|-        -..+.+++     |-=|               .++.|-|-=++..+--
T Consensus       123 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQ  202 (325)
T 3mv2_A          123 KNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLS  202 (325)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCc
Confidence            4567899999999999 8876442        11222222     3222               2333333333322222


Q ss_pred             HHHHHHH-----HHHHhcccHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHh
Q psy16144         73 ALHQKLA-----SLLLRMKRYAEAIDVSQTIMKAHPSYPKV--HKQIFEKAMV  118 (122)
Q Consensus        73 ~vgykLA-----~~ylk~kr~~~AI~vc~kVL~~~P~ypki--r~~il~ka~~  118 (122)
                      .+.--|+     ..-.|.|+|.-|...+++.|+..|+-+.+  -+.|+.+|.+
T Consensus       203 p~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~  255 (325)
T 3mv2_A          203 PIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADS  255 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence            2222222     13469999999999999999999964433  2235555543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=85.19  E-value=2  Score=28.07  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      +||+.|..+++..| +|..|..|-.|+
T Consensus        41 ~Aie~ll~alk~e~-d~~~k~~lr~K~   66 (86)
T 4a5x_A           41 EGIDLLLQVLKGTK-DNTKRCNLREKI   66 (86)
T ss_dssp             HHHHHHHHHHHTCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC-CHHHHHHHHHHH
Confidence            33444444554444 344444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.76  E-value=3.5  Score=36.65  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                      |+-|...-++|..+ .|++...+++||-+|.+.|+|+.|+-    +|---|-+
T Consensus       353 ~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALL----tLNScPm~  400 (754)
T 4gns_B          353 YELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALF----AINSMPRL  400 (754)
T ss_dssp             HHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHH----HHHHSCC-
T ss_pred             HHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHH----HHhcCCCc
Confidence            99999999999999 59999999999999999999999987    45555643

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.33  E-value=1.2  Score=30.25  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHH
Q psy16144         74 LHQKLASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        74 vgykLA~~ylk~kr~~~AI~vc~kVL   99 (122)
                      .--+.|-.+++.|+|+|||++.+++.
T Consensus        17 ~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           17 QQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            34567889999999999999776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.20  E-value=7.4  Score=32.09  Aligned_cols=40  Identities=20%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             HHHHHHHhhC-CCChHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy16144         59 QYTQACRIIG-TSDLALHQKLASLLLRMKRYAEAIDVSQTI   98 (122)
Q Consensus        59 ~ye~Aw~l~~-~~~~~vgykLA~~ylk~kr~~~AI~vc~kV   98 (122)
                      .++.|+++.+ .+++...-+||..+++.+++..|+.+|.+.
T Consensus       667 ~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          667 QLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4455555542 256889999999999999999999999875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.55  E-value=1.4  Score=31.51  Aligned_cols=44  Identities=7%  Similarity=-0.196  Sum_probs=22.9

Q ss_pred             HHHHHHH-HHhhCcch-HHHHhhC---------HHHHHHHHHHHHHhhCCCChHHH
Q psy16144         31 PLSAGLR-KKQYISSA-TNIYNLF---------PDDAVVQYTQACRIIGTSDLALH   75 (122)
Q Consensus        31 ~A~elL~-~l~~nps~-~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vg   75 (122)
                      .++++|. .++.+|+. -..+.|+         |..|..+-+..++. .|+|..+-
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~-eP~N~QA~  115 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-ERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-CTTCHHHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-CCCCHHHH
Confidence            5666666 55555532 1222222         66666666666666 46665543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=80.58  E-value=8.2  Score=26.46  Aligned_cols=13  Identities=8%  Similarity=-0.240  Sum_probs=7.3

Q ss_pred             hHHHHHHHH-HHhh
Q psy16144         29 WEPLSAGLR-KKQY   41 (122)
Q Consensus        29 ~d~A~elL~-~l~~   41 (122)
                      .+.|.++++ +++.
T Consensus        15 l~kAi~lv~~Ave~   28 (117)
T 2cpt_A           15 LQKAIDLASKAAQE   28 (117)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            355666666 5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.59
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.52
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.32
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.28
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.13
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.08
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.07
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.99
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.88
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.84
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.82
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.77
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.66
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.66
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.65
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.4
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.24
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.93
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.78
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.27
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.75
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.29
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.74
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	81.23

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-16  Score=105.34  Aligned_cols=97  Identities=11%  Similarity=0.001  Sum_probs=88.8

Q ss_pred             HHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy16144         15 IAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLL   82 (122)
Q Consensus        15 ~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~y   82 (122)
                      +.++...  .+++.|+|++|++.++ +++++|+++.+|..+         |++|...|++|.++ +|+++.+.+.+|.+|
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-ccchhhHHHHHHHHH
Confidence            3444444  7888999999999999 999999999999854         99999999999999 899999999999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .+.|++.+|+..++++++.+|++|.+...+
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999999998653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-14  Score=100.84  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=85.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.+.|+|++|.+.++ +++.||+++.+|..+         +++|...|++|+++ +|+++.+.+.+|.+|...|++.+|
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-cccchHHHHHHHHHHHHcCCHHHH
Confidence            7889999999999999 999999999999854         99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..+++++..+|+++.++..+
T Consensus        98 ~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          98 LRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHH
Confidence            999999999999999987543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1e-14  Score=101.96  Aligned_cols=85  Identities=16%  Similarity=0.138  Sum_probs=79.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.+.|+|++|.+.++ +++.+|.++.+|..+         |++|+.+|++|+++ +|+++.+.+.||.+|++.|+|++|
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a~~~lg~~~~~l~~~~~A   91 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLEMESYDEA   91 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHH
Confidence            6778999999999999 999999999999844         99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q psy16144         92 IDVSQTIMKAHPSYPK  107 (122)
Q Consensus        92 I~vc~kVL~~~P~ypk  107 (122)
                      +..+++++..+|+.+.
T Consensus        92 ~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          92 IANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCcccHH
Confidence            9999999999986543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1e-13  Score=99.78  Aligned_cols=87  Identities=14%  Similarity=0.035  Sum_probs=83.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         |++|...|++|.++ +|+++.+.+.||.+|...|++.+|
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A  124 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRDKLA  124 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH-HhhhhhhHHHHHHHHHHHhhHHHH
Confidence            9999999999999999 999999999999855         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir  109 (122)
                      ++.++++++.+|+++...
T Consensus       125 ~~~~~~al~~~p~~~~~~  142 (259)
T d1xnfa_         125 QDDLLAFYQDDPNDPFRS  142 (259)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhhccccHHHH
Confidence            999999999999988754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4e-13  Score=95.36  Aligned_cols=108  Identities=7%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             cchhHHHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH---------------HHh-----hC----HHHH
Q psy16144          4 LSVDTMQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN---------------IYN-----LF----PDDA   56 (122)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k---------------A~e-----~l----y~dA   56 (122)
                      ...+|-+-|+....++..  .+.+.|+|++|.+.++ ++++.|.+..               .|.     |+    |++|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            344555666666666666  8888999999999999 9998775321               111     22    9999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         57 VVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        57 a~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      ...+++|+++ +|+++.+.+.+|.+|...|+|.+|+..|+++++.+|++|.++..+
T Consensus        82 ~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l  136 (170)
T d1p5qa1          82 IESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL  136 (170)
T ss_dssp             HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             cchhhhhhhc-cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999 799999999999999999999999999999999999999998654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=102.04  Aligned_cols=88  Identities=11%  Similarity=0.133  Sum_probs=80.1

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      ++...|++++|.+.++ +++.+|+++.+|..+         +++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH-hhccHHHHHHHHHHHHHCCCHHHH
Confidence            8889999999999999 999999999999744         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~  110 (122)
                      ++.++++|+.+|+++.++.
T Consensus       260 ~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         260 VEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHhCCcChhhhh
Confidence            9999999999999987654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-13  Score=98.54  Aligned_cols=89  Identities=16%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|...|++++|.+.++ ++..+|.+..++..+         |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3334444444444444 444444443333322         88999999999998 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..|+++++.+|+++.++..
T Consensus       359 ~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         359 LMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999988653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.39  E-value=1.1e-12  Score=87.42  Aligned_cols=77  Identities=13%  Similarity=0.080  Sum_probs=73.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|...++ +++.+|.++.+|..+         +++|..+|++|+++ +|+++.+.+.||.+|...|++.+|
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHCCCHHHH
Confidence            7788999999999999 999999999999855         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHH
Q psy16144         92 IDVSQTIM   99 (122)
Q Consensus        92 I~vc~kVL   99 (122)
                      ++.++++|
T Consensus       104 ~~~l~~~l  111 (112)
T d1hxia_         104 LASLRAWL  111 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-13  Score=91.17  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=77.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHh-----hC-------HHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYN-----LF-------PDDAVVQYTQACRIIGTSD--LALHQKLASLLLRMK   86 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e-----~l-------y~dAa~~ye~Aw~l~~~~~--~~vgykLA~~ylk~k   86 (122)
                      -++..+++++|++.++ +++.+|.++.++.     ++       +++|+..|++++.. +|++  +.+.|.||.+|.+.|
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~y~~~g   86 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLK   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHh
Confidence            5667789999999999 9999999988777     22       67899999999998 4554  458899999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         87 RYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        87 r~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +|.+|+..++++|+.+|+++.++.
T Consensus        87 ~~~~A~~~~~~aL~~~P~~~~A~~  110 (122)
T d1nzna_          87 EYEKALKYVRGLLQTEPQNNQAKE  110 (122)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhCcCCHHHHH
Confidence            999999999999999999998753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=1.4e-11  Score=86.19  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCc----------------chHHHHh-------hC--HHHHHHHHHHHHHhhCCCChHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYIS----------------SATNIYN-------LF--PDDAVVQYTQACRIIGTSDLALH   75 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~np----------------s~~kA~e-------~l--y~dAa~~ye~Aw~l~~~~~~~vg   75 (122)
                      .+...|+|++|.+.++ ++++.+                ....+|.       .+  |++|+..|++|+++ +|+++.+.
T Consensus        36 ~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~  114 (169)
T d1ihga1          36 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKAL  114 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhhhhhHH
Confidence            7788899999999999 987544                3333333       12  99999999999999 89999999


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         76 QKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        76 ykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      +.+|.+|...|+|.+|+..++++++.+|+++.++..+
T Consensus       115 ~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1         115 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999999999999997654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=3e-12  Score=89.26  Aligned_cols=86  Identities=9%  Similarity=0.063  Sum_probs=78.1

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC-------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF-------------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR   84 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk   84 (122)
                      +.+.|++|.+.++ +++.+|.++.++..+                   +++|+..|++|+++ +|+++.+.+.||.+|..
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-cchhhHHHhhHHHHHHH
Confidence            4577999999999 999999999998733                   58999999999999 89999999999999988


Q ss_pred             ccc-----------HHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         85 MKR-----------YAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        85 ~kr-----------~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      .|+           |.+|++.++++++.+|+++..++.
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence            764           799999999999999999988764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.28  E-value=4.4e-11  Score=83.22  Aligned_cols=107  Identities=8%  Similarity=0.033  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchH---------------------HHHhhC----HHHHHHHHH
Q psy16144         10 QIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSAT---------------------NIYNLF----PDDAVVQYT   61 (122)
Q Consensus        10 ~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~---------------------kA~e~l----y~dAa~~ye   61 (122)
                      +.++....++-.  -+.+.|+|++|.+.++ ++.+-+...                     .|.-++    |++|...|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            344555555555  6778899999999999 997655321                     111122    999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy16144         62 QACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMV  118 (122)
Q Consensus        62 ~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~il~ka~~  118 (122)
                      +|+++ +|+++.+.|++|.+|...|++.+|+..|+++++++|+++.++.. +..+..
T Consensus        92 ~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~-l~~~~~  146 (153)
T d2fbna1          92 KVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS-YELCVN  146 (153)
T ss_dssp             HHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH-HHHHHH
T ss_pred             ccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Confidence            99999 79999999999999999999999999999999999999999875 444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=89.70  Aligned_cols=89  Identities=15%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|++++|.+.++ +++.+|+++.+|..+         +++|...|+.+... .|.++.+.+.+|..|.+.|++.+|
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHH
Confidence            7788899999999999 999999888887743         88899999999888 688899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~  111 (122)
                      +..++++++.+|+++.++..
T Consensus       325 ~~~~~~al~~~p~~~~~~~~  344 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSN  344 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999998887643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-12  Score=95.71  Aligned_cols=88  Identities=7%  Similarity=0.029  Sum_probs=73.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      ++.+.+++++|.++++ +++.||++..||.+.          +++|...|+++.+. +|+++.+.+.+|.++.+.|++.+
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-~p~~~~a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHhhhhHHHHHhHHHHhhccHHH
Confidence            7777888888888888 888888888888743          78888888888888 78888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~  110 (122)
                      |++.+.++++.+|+++.++.
T Consensus       131 Al~~~~kal~~dp~n~~a~~  150 (315)
T d2h6fa1         131 ELEFIADILNQDAKNYHAWQ  150 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhhhhhhhcchHHHH
Confidence            88888888888888887754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.27  E-value=4.5e-11  Score=84.02  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHhhCcchHH----------------------HHhhC--HHHHHHHH
Q psy16144          8 TMQIIQTIAEWHFL--LYLLPWRWEPLSAGLR-KKQYISSATN----------------------IYNLF--PDDAVVQY   60 (122)
Q Consensus         8 ~~~~~~~~~~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~k----------------------A~e~l--y~dAa~~y   60 (122)
                      +-+-+.....++-.  .+.+.|+|++|...++ ++..-+.+..                      .+..+  |.+|+..+
T Consensus         8 ~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1           8 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            33444555555555  7888999999999999 9876544221                      11122  99999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         61 TQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        61 e~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      ++++++ +|+++.+.+.+|.+|...|+|.+|+..|+++++++|+++.+...+
T Consensus        88 ~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          88 DKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             hhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999 899999999999999999999999999999999999999987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-11  Score=89.60  Aligned_cols=86  Identities=9%  Similarity=0.038  Sum_probs=81.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|++++|.+.++ +++.||+.+.+|..+         +++|..+|++|+++ +|+++.+.+.||..|...|++.+|
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-KPDNQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-cccccccccccccccccccccccc
Confidence            6788999999999999 999999999999855         99999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      ++++.+++..+|+.+..
T Consensus       107 ~~~~~~~~~~~~~~~~~  123 (323)
T d1fcha_         107 CEILRDWLRYTPAYAHL  123 (323)
T ss_dssp             HHHHHHHHHTSTTTGGG
T ss_pred             ccchhhHHHhccchHHH
Confidence            99999999999987554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.5e-10  Score=78.26  Aligned_cols=89  Identities=11%  Similarity=0.133  Sum_probs=77.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHh
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLA-------LHQKLASLLLR   84 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~-------vgykLA~~ylk   84 (122)
                      .|.+.|+|++|.+.++ +++.+|+++.++..+         |++|...|++|+++ +|+++.       +.+.||.++..
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~~~~~~~~~~~a~~~~~lg~~~~~   91 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYARIGNSYFK   91 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHHHH
Confidence            6788899999999999 999999999998844         99999999999999 587775       56678888899


Q ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16144         85 MKRYAEAIDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        85 ~kr~~~AI~vc~kVL~~~P~ypkir~~i  112 (122)
                      .+++.+|++.+++.+..+|+ |.+...+
T Consensus        92 ~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          92 EEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            99999999999999999985 6665544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.5e-10  Score=82.12  Aligned_cols=92  Identities=12%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             HHHHHHHHHH-HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         12 IQTIAEWHFL-LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        12 ~~~~~~~~~L-Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      .|++.-|+-= .+.+.|+|+.|.+.++ +..   ..+++|.-+         |++|...|++|+++ +|+++.+.+.+|.
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-dp~~~~a~~~~g~   78 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-hhhhhhhHHHHHH
Confidence            5777777765 8999999999999999 743   345666633         99999999999999 8999999999999


Q ss_pred             HHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         81 LLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        81 ~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                      +|.+.|+|.+|+..|++++...|.++-
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~n~~  105 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRGNQL  105 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred             HHHhhccHHHHHHHHHHHHHhCccCch
Confidence            999999999999999999998776653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.9e-11  Score=90.57  Aligned_cols=92  Identities=10%  Similarity=0.114  Sum_probs=73.6

Q ss_pred             HHHHH--HhcCCCC-hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWR-WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        17 ~~~~L--Lyi~~gk-~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      -|+..  ++...|+ +++|.+.++ +++.||.+..+|...         |++|...|++|.++ +|++..+.+.+|.+|.
T Consensus        79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHH
Confidence            34555  5555554 788888888 888888888888844         88888888888888 7888888888888888


Q ss_pred             hcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         84 RMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        84 k~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      +.|++.+|++.|.++++.+|+++..+
T Consensus       158 ~~~~~~~Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCccHHHH
Confidence            88888888888888888888887664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.7e-10  Score=81.35  Aligned_cols=85  Identities=14%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             CChHHHHHHHH-HHhh----CcchHHHHhh-------C--HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHH
Q psy16144         27 WRWEPLSAGLR-KKQY----ISSATNIYNL-------F--PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI   92 (122)
Q Consensus        27 gk~d~A~elL~-~l~~----nps~~kA~e~-------l--y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI   92 (122)
                      ++.+.|...+. .+..    ++..+.+|..       .  |++|...|++|+++ +|+++.+.+.||.+|.+.|++.+|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHHHHhhhchHHHHHHHHHHhh
Confidence            44555655555 5543    3334444432       2  99999999999999 7999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q psy16144         93 DVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        93 ~vc~kVL~~~P~ypkir~~i  112 (122)
                      +.|+++++.+|+++.++..+
T Consensus        92 ~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHH
Confidence            99999999999999886543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-10  Score=74.41  Aligned_cols=72  Identities=4%  Similarity=0.078  Sum_probs=55.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhCHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMK  100 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~ly~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~  100 (122)
                      ++.+.|+|++|.+.++ +++.+|.+..                   +.++...+.+.||++|.+.|++.+|++.|+++|+
T Consensus        14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~-------------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          14 VAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            5556666666666666 6666555322                   1234467889999999999999999999999999


Q ss_pred             hCCCCHHHHHHH
Q psy16144        101 AHPSYPKVHKQI  112 (122)
Q Consensus       101 ~~P~ypkir~~i  112 (122)
                      .+|++|.+...+
T Consensus        75 l~P~~~~a~~Nl   86 (95)
T d1tjca_          75 LDPEHQRANGNL   86 (95)
T ss_dssp             HCTTCHHHHHHH
T ss_pred             hCcCCHHHHHHH
Confidence            999999997664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.1e-10  Score=80.45  Aligned_cols=86  Identities=8%  Similarity=0.024  Sum_probs=77.4

Q ss_pred             HHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCC--------------
Q psy16144         18 WHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSD--------------   71 (122)
Q Consensus        18 ~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~--------------   71 (122)
                      |+.+  +|...|++++|++.++ +++.||..+.+|..+         |++|...|++|.+.. +.+              
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~  117 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKL  117 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEE
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhccc
Confidence            6667  9999999999999999 999999999999844         999999999999873 443              


Q ss_pred             --hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy16144         72 --LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS  104 (122)
Q Consensus        72 --~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~  104 (122)
                        ..+.|++|..|.+.|++.+|++.+.+++..+|+
T Consensus       118 ~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         118 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence              366789999999999999999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=6.9e-10  Score=76.78  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|+..|++|+++ +|+++.+.+.+|.+|++.|+|.+|+..|.++++++|++++.+..
T Consensus        20 ~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1          20 YPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999 89999999999999999999999999999999999999988653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-09  Score=71.27  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|+..|++|+++ +|+++.+.+.+|.+|.+.|++.+|+..|.++++.+|++|.....
T Consensus        19 ~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   76 (117)
T d1elwa_          19 IDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   76 (117)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHH
Confidence            99999999999999 79999999999999999999999999999999999999998653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.8e-09  Score=72.13  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|.++ +|+++.+.+.||.+|+..|++.+|+..|.++|+.+|+++++...
T Consensus        26 y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_          26 YENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhhhcccc-chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            99999999999999 89999999999999999999999999999999999999988753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.84  E-value=7.8e-09  Score=71.28  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH------------HHh-------hC--HHHHHHHHHHHHHhhCCC---------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN------------IYN-------LF--PDDAVVQYTQACRIIGTS---------   70 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k------------A~e-------~l--y~dAa~~ye~Aw~l~~~~---------   70 (122)
                      .+.+.|+|++|++.++ +++.+|+.+.            +|.       .+  |++|...|++|+++. |.         
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~-~~~~~~~~~~~   96 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF-NRRGELNQDEG   96 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHCCTTSTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc-ccccccccccc
Confidence            7788899999999999 9999887432            222       12  999999999999873 21         


Q ss_pred             --ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q psy16144         71 --DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY  105 (122)
Q Consensus        71 --~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~y  105 (122)
                        ...+.+++|.+|.+.|++++|++.|++++.+.|..
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence              23467999999999999999999999999986643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.82  E-value=1.3e-08  Score=67.15  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      +++|...|++|.+. +|+++.+.+.||.+|.+.|++.+|+..++++++.+|+++.++..
T Consensus        32 ~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   89 (112)
T d1hxia_          32 LAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   89 (112)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHhhhccc-ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHH
Confidence            99999999999999 79999999999999999999999999999999999999998754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6e-08  Score=67.94  Aligned_cols=78  Identities=10%  Similarity=0.020  Sum_probs=69.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .|.+.|+|++|++.++ +++.||+++.+|..+         |++|...|++|.++ +|+|+.+-..|+.++.+.+++.+.
T Consensus        71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999 999999999999855         99999999999999 799999999999999998888776


Q ss_pred             HH-HHHHHHH
Q psy16144         92 ID-VSQTIMK  100 (122)
Q Consensus        92 I~-vc~kVL~  100 (122)
                      .. +|.+.+.
T Consensus       150 e~~~~~~~f~  159 (170)
T d1p5qa1         150 EKKLYANMFE  159 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            43 3444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.5e-09  Score=70.77  Aligned_cols=58  Identities=12%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|+.+|++|+++ +|+++.+.+.+|.+|.+.|+|.+|+..|+++++.+|+++..+..
T Consensus        20 y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_          20 FDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHh-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            99999999999999 79999999999999999999999999999999999999876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=2.3e-07  Score=69.21  Aligned_cols=91  Identities=9%  Similarity=-0.024  Sum_probs=75.6

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------------PDDAVVQYTQACRIIGTSDLALHQKLASL   81 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~   81 (122)
                      +.-..+..++|.+++. +++.||++..+|.+.                   +++|...|+++++. +|+++.+.+.+|..
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-~pk~~~~~~~~~~~  116 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWL  116 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHhhHH
Confidence            3444444689999999 999999999888632                   78999999999999 89999999999988


Q ss_pred             HHhccc--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16144         82 LLRMKR--YAEAIDVSQTIMKAHPSYPKVHKQIF  113 (122)
Q Consensus        82 ylk~kr--~~~AI~vc~kVL~~~P~ypkir~~il  113 (122)
                      +...++  +.+|+..|.+++..+|.+.......+
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  150 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHCWDYRR  150 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHH
Confidence            888776  88999999999999998877654433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=3.3e-08  Score=68.54  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|.+.|+|++|.+.++ +++.+|+++++|..+         |++|...|++|+++ +|+|+.+...|+.++.+.+++.++
T Consensus        86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999999855         99999999999999 799999999999999888887765


Q ss_pred             H
Q psy16144         92 I   92 (122)
Q Consensus        92 I   92 (122)
                      .
T Consensus       165 ~  165 (169)
T d1ihga1         165 E  165 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=5.2e-08  Score=67.13  Aligned_cols=58  Identities=12%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRM----------KRYAEAIDVSQTIMKAHPSYPKVHKQ  111 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~----------kr~~~AI~vc~kVL~~~P~ypkir~~  111 (122)
                      |++|...|++|.++ +|+|+.+.+.+|.+|...          +++.+||..|+++++++|+++.+.-.
T Consensus        13 fe~A~~~~e~al~~-~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~   80 (145)
T d1zu2a1          13 FEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC   80 (145)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence            99999999999999 799999999999999854          55689999999999999999988743

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=3.1e-08  Score=74.12  Aligned_cols=90  Identities=9%  Similarity=-0.150  Sum_probs=77.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC------------------------------------------------
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF------------------------------------------------   52 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l------------------------------------------------   52 (122)
                      ++...|++++|.+.++ +++.||++..+|..+                                                
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            7777888999999999 999999888887521                                                


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHH
Q psy16144         53 -------------------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 -------------------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypk  107 (122)
                                               +.+|...|.++.+. +|+++.+.+.||..|...|++.+|++.|+++++.+|+.+.
T Consensus       233 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence                                     67777788888877 6888999999999999999999999999999999999887


Q ss_pred             HHHHH
Q psy16144        108 VHKQI  112 (122)
Q Consensus       108 ir~~i  112 (122)
                      ...++
T Consensus       312 y~~~L  316 (334)
T d1dcea1         312 YLDDL  316 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.65  E-value=8.3e-08  Score=66.81  Aligned_cols=83  Identities=10%  Similarity=-0.007  Sum_probs=70.3

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH-
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE-   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~-   90 (122)
                      .|...|++++|++.++ +++.||++.++|..+         |++|...|++|.++ +|+|+.+.-.|+.+..+.+.+.+ 
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhHHHH
Confidence            7889999999999999 999999999999854         99999999999999 79999999999999888877654 


Q ss_pred             HHHHHHHHHHhCCCC
Q psy16144         91 AIDVSQTIMKAHPSY  105 (122)
Q Consensus        91 AI~vc~kVL~~~P~y  105 (122)
                      .-.++.+.++.-+++
T Consensus       152 ~kk~~~~~f~~~~~~  166 (168)
T d1kt1a1         152 DRRTYANMFKKFAEQ  166 (168)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhc
Confidence            345555555554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.57  E-value=1.2e-07  Score=65.21  Aligned_cols=65  Identities=8%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhccc
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKR   87 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr   87 (122)
                      .|.+.|++++|.+.++ +++++|++.++|..+         |++|...|++|.++ +|+|+.+-..|+.+..+.++
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999999855         99999999999999 79999999998888776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2e-07  Score=66.08  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             CcccchhHHHHHHHHHHHHHH---HhcCCCChHHHHHHHH-HHhhCcchHH-----HHhhC---------HHHHHHHHHH
Q psy16144          1 MKSLSVDTMQIIQTIAEWHFL---LYLLPWRWEPLSAGLR-KKQYISSATN-----IYNLF---------PDDAVVQYTQ   62 (122)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~L---Lyi~~gk~d~A~elL~-~l~~nps~~k-----A~e~l---------y~dAa~~ye~   62 (122)
                      +|.++-||+.     +|++.+   ++++.|++++|.++++ +++.+|+...     ++..+         +++|...|++
T Consensus         2 ~~~~~~~~~~-----ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~   76 (366)
T d1hz4a_           2 IKDIREDTMH-----AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ   76 (366)
T ss_dssp             CCCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhccccchh-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3555666653     667777   8999999999999999 9999998632     33311         9999999999


Q ss_pred             HHHhhCCCC------hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         63 ACRIIGTSD------LALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        63 Aw~l~~~~~------~~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      |+++. +..      ..+.+.++..|...|++..|+..+.+++...+
T Consensus        77 a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          77 TEQMA-RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99874 332      34578899999999999999999999997654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=5.8e-07  Score=64.21  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=72.0

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH----------------------HHhhC---------HHHHHHHHHHHHHhhCC
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN----------------------IYNLF---------PDDAVVQYTQACRIIGT   69 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k----------------------A~e~l---------y~dAa~~ye~Aw~l~~~   69 (122)
                      -....|++++|.+.|+ ++.++|+..-                      +++.+         |.+|+..+++++++ +|
T Consensus        20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~P   98 (179)
T d2ff4a2          20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-HP   98 (179)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-CC
Confidence            5678899999999999 9999887532                      22211         99999999999999 89


Q ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHH-------HHhCCCCHHH
Q psy16144         70 SDLALHQKLASLLLRMKRYAEAIDVSQTI-------MKAHPSYPKV  108 (122)
Q Consensus        70 ~~~~vgykLA~~ylk~kr~~~AI~vc~kV-------L~~~P~ypki  108 (122)
                      .+..+...|+..|.+.|++.+|+.+|+++       |...|. |..
T Consensus        99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l  143 (179)
T d2ff4a2          99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTL  143 (179)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHH
Confidence            99999999999999999999999999987       667783 543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.7e-08  Score=76.94  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      .+.+.|+++.|....+ +++.+|  ..++.++         |++|..+|++|+++ +|+++.+.+.||-.|...|++.+|
T Consensus       129 ~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A  205 (497)
T d1ya0a1         129 ISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTT  205 (497)
T ss_dssp             --------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHH
Confidence            6667788888888777 776554  3444433         99999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..|.++|...|++|.++..+
T Consensus       206 ~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         206 IFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHH
Confidence            999999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=5e-07  Score=66.96  Aligned_cols=87  Identities=16%  Similarity=0.025  Sum_probs=70.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchH------HHHhh--------C--HHHHHHHHHHHHHhhCCCC-----hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSAT------NIYNL--------F--PDDAVVQYTQACRIIGTSD-----LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~------kA~e~--------l--y~dAa~~ye~Aw~l~~~~~-----~~vgykLA   79 (122)
                      +|.+.|++++|.+.++ +++..+...      .++..        +  |++|..+|++|.++....+     ..+..++|
T Consensus        86 ~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la  165 (290)
T d1qqea_          86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA  165 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence            8999999999999999 998877653      22221        2  9999999999998742221     34578899


Q ss_pred             HHHHhcccHHHHHHHHHHHHHhCCCCHHH
Q psy16144         80 SLLLRMKRYAEAIDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        80 ~~ylk~kr~~~AI~vc~kVL~~~P~ypki  108 (122)
                      ..|.+.|+|.+|++.|++++..+|+.+..
T Consensus       166 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         166 DLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            99999999999999999999999987643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.40  E-value=8.3e-07  Score=67.24  Aligned_cols=87  Identities=10%  Similarity=0.011  Sum_probs=47.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      +|+..|++++|.+.|+ +++.+|+...++..+         .+++...+..+..+..|.+....+.+|..+...|++++|
T Consensus        39 lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A  118 (264)
T d1zbpa1          39 LLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV  118 (264)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHH
Confidence            5555555555555555 555555555554422         111111111212222233333345567777778888888


Q ss_pred             HHHHHHHHHhCCCCHHH
Q psy16144         92 IDVSQTIMKAHPSYPKV  108 (122)
Q Consensus        92 I~vc~kVL~~~P~ypki  108 (122)
                      ++.++++++..|+.|.+
T Consensus       119 ~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1         119 SELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHHHHHHHHHCCCCCEE
T ss_pred             HHHHHHHHhcCCCCCcc
Confidence            88888888888877643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.8e-07  Score=60.31  Aligned_cols=54  Identities=9%  Similarity=0.055  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccH---HHHHHHHHHHHHhCCCCHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY---AEAIDVSQTIMKAHPSYPK  107 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~---~~AI~vc~kVL~~~P~ypk  107 (122)
                      +++|...|++|+++ +|+++.+-|+||.++++.++.   .+||.+++++|+.+|+..+
T Consensus        15 l~~Ae~~Y~~aL~~-~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~   71 (122)
T d1nzna_          15 LLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH
Confidence            89999999999999 799999999999999986655   4699999999999885433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=5.6e-06  Score=61.45  Aligned_cols=88  Identities=10%  Similarity=-0.009  Sum_probs=47.9

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcch-HHHHh-hC--------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh-cccHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSA-TNIYN-LF--------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR-MKRYA   89 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~-~kA~e-~l--------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk-~kr~~   89 (122)
                      ++.+.|+++.|..+++ +++.+|++ ...|. ++        ++.|...|++|.+. .|.++.+....|+...+ .|...
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-~~~~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhccCHH
Confidence            5555666666666666 66666643 23343 11        55555566666555 35555555555554333 34555


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q psy16144         90 EAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        90 ~AI~vc~kVL~~~P~ypkir~  110 (122)
                      .|..+++++++.+|++|.++.
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~  207 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVL  207 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHH
Confidence            555666666666665555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.04  E-value=9.7e-06  Score=61.15  Aligned_cols=69  Identities=13%  Similarity=0.010  Sum_probs=35.4

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHHHH
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAID   93 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~AI~   93 (122)
                      +++|++++|.+.++ +++.+|++..++..+         +++|...|+.+.++ +|+++.+...++..+...+...++..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-FPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhccccHHHHH
Confidence            34455555555555 555555555555422         55555555555555 45555555555555544444444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=2.6e-05  Score=57.73  Aligned_cols=92  Identities=5%  Similarity=-0.026  Sum_probs=79.7

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC----------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF----------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAE   90 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l----------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~   90 (122)
                      +..+.|.++.|.++++ +++..|++...|-..          ++.|...|+++.+. .|+++.+....+..+.+.|++..
T Consensus       143 ~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~  221 (308)
T d2onda1         143 FARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHH
Confidence            6778899999999999 999999988766522          78899999999999 69999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Q psy16144         91 AIDVSQTIMKAHPSYPKVHKQIFE  114 (122)
Q Consensus        91 AI~vc~kVL~~~P~ypkir~~il~  114 (122)
                      |..+++++++..|..|.-...|.+
T Consensus       222 aR~~fe~ai~~~~~~~~~~~~iw~  245 (308)
T d2onda1         222 TRVLFERVLTSGSLPPEKSGEIWA  245 (308)
T ss_dssp             HHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999999988764444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=2.4e-05  Score=57.52  Aligned_cols=81  Identities=22%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhC------cchHHHHhhC---------HHHHHHHHHHHHHhhCCCC------hHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYI------SSATNIYNLF---------PDDAVVQYTQACRIIGTSD------LALHQKLA   79 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~n------ps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~------~~vgykLA   79 (122)
                      +|-..|+|++|.+.+. ++...      ++...+|.-+         +++|+.+|++|.++. +.+      ..+..+||
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh-hhcccchhHHHHHHHHH
Confidence            8889999999999999 98873      3334445421         999999999999984 444      56788999


Q ss_pred             HHHHh-cccHHHHHHHHHHHHHhCC
Q psy16144         80 SLLLR-MKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        80 ~~ylk-~kr~~~AI~vc~kVL~~~P  103 (122)
                      ..|.. .|++.+|+..++++++.++
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88865 6999999999999998765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.9e-05  Score=54.67  Aligned_cols=56  Identities=14%  Similarity=0.045  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDL-ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH  109 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~-~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir  109 (122)
                      .+.|+..++.+.+. +|.+. ...|.||..|.+.|+|.+|...|+++|+.+|+++.++
T Consensus        54 ~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          54 ERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            78999999999987 67665 7899999999999999999999999999999999885

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.90  E-value=7.9e-06  Score=55.62  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCh------------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy16144         53 PDDAVVQYTQACRIIGTSDL------------ALHQKLASLLLRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~------------~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P  103 (122)
                      |++|+..|++|+++. |+.|            .+..++|.+|.+.|+|.+|+..|+++|+..|
T Consensus        25 y~~Ai~~y~~Al~i~-~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          25 YDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-hhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            999999999999994 7654            4677899999999999999999999998765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=3.3e-05  Score=54.19  Aligned_cols=82  Identities=12%  Similarity=-0.032  Sum_probs=66.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHH-----------HHhhC--HHHHHHHHHHHHHhh-----CCCChHHHHHHHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATN-----------IYNLF--PDDAVVQYTQACRII-----GTSDLALHQKLASLL   82 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~k-----------A~e~l--y~dAa~~ye~Aw~l~-----~~~~~~vgykLA~~y   82 (122)
                      ++...|+++.|.+.++ +++.+|.+..           ++..+  +++|...++++....     .|....+.+.||..|
T Consensus       222 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  301 (366)
T d1hz4a_         222 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY  301 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence            7889999999999999 9888776432           11122  999999999998653     234456789999999


Q ss_pred             HhcccHHHHHHHHHHHHHhCC
Q psy16144         83 LRMKRYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        83 lk~kr~~~AI~vc~kVL~~~P  103 (122)
                      .+.|++.+|++.++++|+..+
T Consensus       302 ~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         302 WQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=8.8e-05  Score=52.43  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCh----------------------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCHHHHH
Q psy16144         53 PDDAVVQYTQACRIIGTSDL----------------------ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK  110 (122)
Q Consensus        53 y~dAa~~ye~Aw~l~~~~~~----------------------~vgykLA~~ylk~kr~~~AI~vc~kVL~~~P~ypkir~  110 (122)
                      +++|...|.+|+++ .+.++                      .+..+||..+++.|++.+|+..|+++++.+|.+..++.
T Consensus        27 ~e~A~~~~~~AL~l-~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~  105 (179)
T d2ff4a2          27 FEQASRHLSAALRE-WRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT  105 (179)
T ss_dssp             HHHHHHHHHHHHTT-CCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHhh-CcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHH
Confidence            89999999999998 45443                      46789999999999999999999999999999999987


Q ss_pred             HHHH
Q psy16144        111 QIFE  114 (122)
Q Consensus       111 ~il~  114 (122)
                      ..+.
T Consensus       106 ~l~~  109 (179)
T d2ff4a2         106 QLIT  109 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.3e-05  Score=64.18  Aligned_cols=88  Identities=13%  Similarity=0.012  Sum_probs=57.4

Q ss_pred             HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcccHHHH
Q psy16144         22 LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEA   91 (122)
Q Consensus        22 Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk~kr~~~A   91 (122)
                      |+...|.|+.|...++ .++.+|.+..++..+         +.+|...|+++..+. +  ..+.+.||..+...|+|.+|
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~--~~~~~~LG~l~~~~~~~~~A  171 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-C--QHCLVHLGDIARYRNQTSQA  171 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH-H--HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-H--HHHHHHHHHHHHHcccHHHH
Confidence            5666788899999999 999999988888744         899999999999884 4  46888999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q psy16144         92 IDVSQTIMKAHPSYPKVHKQI  112 (122)
Q Consensus        92 I~vc~kVL~~~P~ypkir~~i  112 (122)
                      +..|+++++.+|+++......
T Consensus       172 ~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         172 ESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             HHHHHHHHHHCTTBSHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHH
Confidence            999999999999999886543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00025  Score=44.63  Aligned_cols=54  Identities=9%  Similarity=0.065  Sum_probs=39.5

Q ss_pred             hHHHHHHHH-HHhhCcchHHHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy16144         29 WEPLSAGLR-KKQYISSATNIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLASLLL   83 (122)
Q Consensus        29 ~d~A~elL~-~l~~nps~~kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~yl   83 (122)
                      |++|.++.. .-.-.++...+++.+         |++|..+|++|+++ +|+++.+.++|++...
T Consensus        28 ~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          28 MEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEHQRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-CcCCHHHHHHHHHHHH
Confidence            566666665 444445555555533         99999999999999 7999999999877544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.35  E-value=0.03  Score=36.28  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=51.8

Q ss_pred             cCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----c
Q psy16144         24 LLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR----M   85 (122)
Q Consensus        24 i~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk----~   85 (122)
                      .....+++|.++++ +.+.  +++.|...+             +..|...|++|.+..   +|.+.+.||..|..    .
T Consensus        34 ~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccC
Confidence            34456788888888 6554  344444422             778888888887763   67788888888887    4


Q ss_pred             ccHHHHHHHHHHHHHhC
Q psy16144         86 KRYAEAIDVSQTIMKAH  102 (122)
Q Consensus        86 kr~~~AI~vc~kVL~~~  102 (122)
                      +++.+|+..++++-+..
T Consensus       109 ~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         109 KNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            67888888888776554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.26  E-value=0.013  Score=38.07  Aligned_cols=74  Identities=7%  Similarity=-0.097  Sum_probs=58.2

Q ss_pred             ChHHHHHHHH-HHhhCcchHHHHhhC-------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cccHHHHHHHH
Q psy16144         28 RWEPLSAGLR-KKQYISSATNIYNLF-------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR----MKRYAEAIDVS   95 (122)
Q Consensus        28 k~d~A~elL~-~l~~nps~~kA~e~l-------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk----~kr~~~AI~vc   95 (122)
                      ++++|.++++ +.+.+  ++.+...+       +++|...|++|.+.   .++.+-+.||..|+.    .+++.+|+..+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~~~~~~~~a~~~~~~aa~~---g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--ChhhhhhhccccccCHHHHHHHHhhhhcc---cchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            5789999999 76654  33444433       99999999999876   478999999999997    57799999999


Q ss_pred             HHHHHhCCCCHHH
Q psy16144         96 QTIMKAHPSYPKV  108 (122)
Q Consensus        96 ~kVL~~~P~ypki  108 (122)
                      ++..+..  +|..
T Consensus        83 ~~aa~~g--~~~a   93 (133)
T d1klxa_          83 SKACGLN--DQDG   93 (133)
T ss_dssp             HHHHHTT--CHHH
T ss_pred             hhhhccC--cchH
Confidence            9987653  4444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.75  E-value=0.051  Score=37.77  Aligned_cols=85  Identities=11%  Similarity=-0.026  Sum_probs=65.5

Q ss_pred             HHHHH--HhcCCCChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy16144         17 EWHFL--LYLLPWRWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLAS   80 (122)
Q Consensus        17 ~~~~L--Lyi~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~   80 (122)
                      +|+.|  ++.+.|++++|.+.|+ +.+.  ++..|+..+             +..|...|+.+-...   ++.+-+.||.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~   78 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence            45555  7778899999999999 8665  456666533             788999999987763   6788889998


Q ss_pred             HHHh----cccHHHHHHHHHHHHHhCCCCH
Q psy16144         81 LLLR----MKRYAEAIDVSQTIMKAHPSYP  106 (122)
Q Consensus        81 ~ylk----~kr~~~AI~vc~kVL~~~P~yp  106 (122)
                      .+..    .+....|+..++.+.+..+...
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhH
Confidence            8875    5788899999999887766433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.045  Score=37.00  Aligned_cols=53  Identities=6%  Similarity=-0.243  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHH-HHhhCcchH-HHHhhC---------HHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy16144         26 PWRWEPLSAGLR-KKQYISSAT-NIYNLF---------PDDAVVQYTQACRIIGTSDLALHQKLA   79 (122)
Q Consensus        26 ~gk~d~A~elL~-~l~~nps~~-kA~e~l---------y~dAa~~ye~Aw~l~~~~~~~vgykLA   79 (122)
                      ....++|+.+|+ +++.+|+.. .++.++         |+.|..+++++++. .|+|..+..-.-
T Consensus        51 ~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-eP~n~qA~~L~~  114 (124)
T d2pqrb1          51 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-ERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-CCCcHHHHHHHH
Confidence            345789999999 999999864 566655         99999999999999 799998865443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.29  E-value=0.11  Score=35.84  Aligned_cols=74  Identities=14%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             CCCChHHHHHHHH-HHhhCcchHHHHhhC-------------HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cc
Q psy16144         25 LPWRWEPLSAGLR-KKQYISSATNIYNLF-------------PDDAVVQYTQACRIIGTSDLALHQKLASLLLR----MK   86 (122)
Q Consensus        25 ~~gk~d~A~elL~-~l~~nps~~kA~e~l-------------y~dAa~~ye~Aw~l~~~~~~~vgykLA~~ylk----~k   86 (122)
                      .......+..+++ +.+.  +++.|...+             +++|...|++|.+..   ++.+.|.||..|.+    .+
T Consensus       158 ~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~  232 (265)
T d1ouva_         158 TPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTR  232 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSC
T ss_pred             cccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCcc
Confidence            3455667777777 5543  334444311             888999999998873   68899999999987    55


Q ss_pred             cHHHHHHHHHHHHHhCC
Q psy16144         87 RYAEAIDVSQTIMKAHP  103 (122)
Q Consensus        87 r~~~AI~vc~kVL~~~P  103 (122)
                      ++.+|+..++++.+..+
T Consensus       233 n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         233 NEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             CSTTHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCcC
Confidence            78899999999987765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.74  E-value=0.19  Score=31.92  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHH
Q psy16144         77 KLASLLLRMKRYAEAIDVSQTIM   99 (122)
Q Consensus        77 kLA~~ylk~kr~~~AI~vc~kVL   99 (122)
                      +=|-.+++.|+|+|||++.+++.
T Consensus        13 RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            44778999999999999777543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=2.3  Score=25.38  Aligned_cols=29  Identities=21%  Similarity=0.238  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16144         88 YAEAIDVSQTIMKAHPSYPKVHKQIFEKA  116 (122)
Q Consensus        88 ~~~AI~vc~kVL~~~P~ypkir~~il~ka  116 (122)
                      |.+|++.+..+++..|+.|+.|..|-.|+
T Consensus        34 Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~   62 (77)
T d1wr0a1          34 YQHAVQYFLHVVKYEAQGDKAKQSIRAKC   62 (77)
T ss_dssp             HHHHHHHHHHHHHHSCCTGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            44556666666766777776655554444