Psyllid ID: psy16151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKIH
Secondary Structure (PSIPRED)
ccHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccHHHHcccccccccEEEEEEccEEEEEEcccccccEEEEEEcccccEEcccccHHHHHHcHHHHHHcccEEEEEEcccHHHHHHHHcccccccccccccccccccccccHHHHcccccccccEEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccEEEcccccccccccEccccEEEEEEccEEEEEEHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHcccHHHcccccccccEEEccccHHHHHcccEEccccEEcEEEEEEccccEEEEEEEEcccEcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHEEccccccEEcc
Coil and Loop (DISEMBL)
MLRLMMTSGQIVDIVQTLEDRVHhvlfkkpfyakraknpyfpfctqpsssIVFLKLFLHYFICFklvskpapfwqgtavvdgqlkeiklsdyyGKYLVFFfypldftfvcptEILAFNDRLEEFHQINTEVVAASVDSHFTHlawvntprkegglgklkipllsdlthkisldygvylsdqghtlrglfiidrngvlrqitmndlpvgrsvDETLRLVQAFHdplrtgaiNGLSLLVIGLFQVTEKTCDILEdhgvtcelrgrtfikgkGLITTYFIRQQEIEKFQKinidsksymkih
Flexible Loop (DISEMBL)
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWvntprkegglgKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHgvtcelrgrtfikgkGLITTYFIRQQeiekfqkinidsksymkih
Low Complexity Region (SEG)
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKIH
Disordered region (IsUnstruct)
*******SGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINI*********
Disordered Region (DISOPRED)
********GQIVDIVQTLEDRVHHVLFKKPFYAKRA*************************ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILE**G***************************************YM***
Disordered Region (DISEMBL)
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKIH
Disordered Region (DISPRO)
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQ*******LKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRLMMTSGQIVDIVQTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q13162	271	Peroxiredoxin-4 OS=Homo s	yes	N/A	0.521	0.575	0.807	3e-73
O08807	274	Peroxiredoxin-4 OS=Mus mu	yes	N/A	0.521	0.569	0.794	1e-72
Q9Z0V5	273	Peroxiredoxin-4 OS=Rattus	yes	N/A	0.521	0.571	0.794	3e-72
Q9BGI2	274	Peroxiredoxin-4 OS=Bos ta	yes	N/A	0.521	0.569	0.775	2e-71
Q9BGI3	199	Peroxiredoxin-2 OS=Bos ta	no	N/A	0.538	0.809	0.708	5e-64
Q5RC63	177	Peroxiredoxin-2 OS=Pongo	no	N/A	0.521	0.881	0.705	6e-62
P0CB50	199	Peroxiredoxin-1 OS=Gallus	no	N/A	0.525	0.788	0.689	4e-61
Q2PFZ3	198	Peroxiredoxin-2 OS=Macaca	N/A	N/A	0.521	0.787	0.698	4e-61
P32119	198	Peroxiredoxin-2 OS=Homo s	no	N/A	0.521	0.787	0.698	4e-61
Q90384	200	Peroxiredoxin OS=Cynops p	N/A	N/A	0.548	0.82	0.672	6e-61

>sp|Q13162|PRDX4_HUMAN Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 81  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 140

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 141 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 200

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 201 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 236

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|O08807|PRDX4_MOUSE Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 141/156 (90%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct: 84  ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 143

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL D GHTLR
Sbjct: 144 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLR 203

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 204 GLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQ 239

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Z0V5|PRDX4_RAT Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 124/156 (79%), Positives = 141/156 (90%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct: 83  ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 142

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL D GHTLR
Sbjct: 143 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLR 202

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 203 GLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQ 238

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9BGI2|PRDX4_BOVIN Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 140/156 (89%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR++EF  
Sbjct: 84  ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIDEFRS 143

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG + IPLL+DL H+IS DYGVYL D GHTLR
Sbjct: 144 INTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLR 203

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 204 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 239

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9BGI3|PRDX2_BOVIN Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 131/161 (81%)

Query: 62  ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRL 121
           +C   V KPAP +Q TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF+DR 
Sbjct: 4   VCKAHVGKPAPEFQATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRA 63

Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
            EFH++N EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T K+S DYGV   D+
Sbjct: 64  AEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDE 123

Query: 182 GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           G   RGLF+ID  GVLRQ+T+NDLPVGRSVDE LRLVQAF 
Sbjct: 124 GIAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQ 164

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5RC63|PRDX2_PONAB Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 130/156 (83%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+FH+
Sbjct: 8   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFHK 67

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   R
Sbjct: 68  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYR 127

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 128 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 163

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P0CB50|PRDX1_CHICK Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 66  LVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
            + KPAP +  TAV+ DGQ K+IKLSDY GKY+VFFFYPLDFTFVCPTEI+A++DR +EF
Sbjct: 7   FIGKPAPDFTATAVMPDGQFKDIKLSDYRGKYVVFFFYPLDFTFVCPTEIIAYSDRADEF 66

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            +IN E++ ASVDSHF HLAW+NTP+K+GGLG +KIPL+SD    I+ DYGV   D+G  
Sbjct: 67  KKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIA 126

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
            RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 127 YRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQ 164

Involved in redox regulation of the cell (By similarity). Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin (By similarity). May play an important role in eliminating peroxides generated during metabolism (By similarity). Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q2PFZ3|PRDX2_MACFA Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 129/156 (82%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+F +
Sbjct: 8   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK 67

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   R
Sbjct: 68  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYR 127

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 128 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 163

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P32119|PRDX2_HUMAN Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5

 Score =  234 bits (598), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 129/156 (82%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+F +
Sbjct: 8   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK 67

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   R
Sbjct: 68  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYR 127

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 128 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 163

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q90384|TDX_CYNPY Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1

 Score =  234 bits (597), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/165 (67%), Positives = 132/165 (80%), Gaps = 1/165 (0%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           + KPAP +Q  AV+  G+ K+IKL+DY GKY+VFFFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 8   IGKPAPEFQAKAVMPGGEFKDIKLADYRGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFR 67

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           +IN E++AASVDSHF HLAW NT RKEGGLG +KIPL++D    IS DYGV   D+G + 
Sbjct: 68  KINCELIAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVADTKRTISQDYGVLKEDEGISF 127

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF    + G +
Sbjct: 128 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQHTDKFGEV 172

Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Cynops pyrrhogaster (taxid: 8330)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
410915698	875	PREDICTED: zinc finger X-chromosomal pro	0.555	0.189	0.795	4e-75
225713470	236	Peroxiredoxin-4 [Lepeophtheirus salmonis	0.525	0.665	0.840	2e-73
348518736	261	PREDICTED: peroxiredoxin-4-like [Oreochr	0.548	0.628	0.798	5e-73
193697661	245	PREDICTED: peroxiredoxin-4-like [Acyrtho	0.581	0.710	0.767	6e-73
55742316	271	peroxiredoxin 4 precursor [Xenopus (Silu	0.521	0.575	0.826	7e-73
148232668	267	peroxiredoxin 4 precursor [Xenopus laevi	0.521	0.584	0.826	7e-73
222159957	264	2-Cys peroxiredoxin 4 [Seriola lalandi]	0.548	0.621	0.786	2e-72
432897059	257	PREDICTED: peroxiredoxin-4-like [Oryzias	0.548	0.638	0.786	3e-72
148234128	268	uncharacterized protein LOC496089 precur	0.521	0.582	0.820	3e-72
326913542	314	PREDICTED: peroxiredoxin-4-like [Meleagr	0.521	0.496	0.814	3e-72

>gi|410915698|ref|XP_003971324.1| PREDICTED: zinc finger X-chromosomal protein-like [Takifugu rubripes]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/166 (79%), Positives = 146/166 (87%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EFH 
Sbjct: 79  ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFHA 138

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 139 INTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 198

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAING 232
           GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF    + G   G
Sbjct: 199 GLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEDEG 244

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225713470|gb|ACO12581.1| Peroxiredoxin-4 [Lepeophtheirus salmonis] gi|290563010|gb|ADD38899.1| Peroxiredoxin-4 [Lepeophtheirus salmonis]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 143/157 (91%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           ++SKPAPFW+GTAVV G++KE++LSDY GKYLVFFFYPLDFTFVCPTEILAFNDR+EEF 
Sbjct: 43  MISKPAPFWKGTAVVKGEMKEVQLSDYKGKYLVFFFYPLDFTFVCPTEILAFNDRVEEFR 102

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           +INTEVVA SVDSHFTHLAW N PRKEGGLGKL IPLLSDLTH IS DYGVYL + GHTL
Sbjct: 103 KINTEVVACSVDSHFTHLAWTNLPRKEGGLGKLNIPLLSDLTHSISKDYGVYLEENGHTL 162

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 163 RGLFIIDGKGILRQITMNDLPVGRSVDETLRLVQAFQ 199

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348518736|ref|XP_003446887.1| PREDICTED: peroxiredoxin-4-like [Oreochromis niloticus]

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 146/164 (89%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DRL EF  
Sbjct: 71  ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFSDRLHEFQA 130

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLGK+KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 131 INTEVVACSVDSQFTHLAWINTPRKQGGLGKMKIPLLSDLTHQISKDYGVYLEDQGHTLR 190

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           GLFIID  G+LRQITMNDLPVGRSVDETLRLVQAF    + G +
Sbjct: 191 GLFIIDGKGILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 234

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193697661|ref|XP_001949571.1| PREDICTED: peroxiredoxin-4-like [Acyrthosiphon pisum]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/176 (76%), Positives = 150/176 (85%), Gaps = 2/176 (1%)

Query: 47  PSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF 106
           PSS+I      L Y     L+SKPAP W+GTAV++G L+E+KL D+ GKYLVFFFYPLDF
Sbjct: 35  PSSTIESTNHKLQY--TKALISKPAPDWKGTAVINGSLQELKLKDFRGKYLVFFFYPLDF 92

Query: 107 TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166
           TFVCPTEILAFNDR+EEF +I+  VVAASVDSHFTHLAWVNTPRK+GGLG L IPLLSD+
Sbjct: 93  TFVCPTEILAFNDRIEEFRRIDANVVAASVDSHFTHLAWVNTPRKDGGLGNLSIPLLSDM 152

Query: 167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           THKIS DYGVYLSD GH+LRGLFIID  G+LRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 153 THKISKDYGVYLSDVGHSLRGLFIIDNRGILRQITMNDLPVGRSVDETLRLVQAFQ 208

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|55742316|ref|NP_001006812.1| peroxiredoxin 4 precursor [Xenopus (Silurana) tropicalis] gi|49898976|gb|AAH76692.1| peroxiredoxin 4 [Xenopus (Silurana) tropicalis] gi|89269080|emb|CAJ83798.1| peroxiredoxin 4 [Xenopus (Silurana) tropicalis]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 143/156 (91%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct: 81  ISKPAPYWEGTAVINGEFKELKLTDYKGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRS 140

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 141 INTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 200

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 201 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQ 236

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148232668|ref|NP_001085918.1| peroxiredoxin 4 precursor [Xenopus laevis] gi|49118952|gb|AAH73532.1| MGC82793 protein [Xenopus laevis] gi|343479681|gb|AEM44541.1| peroxiredoxin 4 [Xenopus laevis]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 143/156 (91%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct: 77  ISKPAPYWEGTAVINGEFKELKLTDYKGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRS 136

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 137 INTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 196

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 197 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQ 232

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|222159957|gb|ACM47312.1| 2-Cys peroxiredoxin 4 [Seriola lalandi]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 147/164 (89%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKP+P W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EFH 
Sbjct: 74  ISKPSPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFHA 133

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG++KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 134 INTEVVACSVDSQFTHLAWINTPRKQGGLGEMKIPLLSDLTHQISKDYGVYLEDQGHTLR 193

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           GLFIID  G+LRQITMNDLPVGRSVDETLRLVQAF    + G +
Sbjct: 194 GLFIIDGKGILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 237

Source: Seriola lalandi

Species: Seriola lalandi

Genus: Seriola

Family: Carangidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432897059|ref|XP_004076406.1| PREDICTED: peroxiredoxin-4-like [Oryzias latipes]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 146/164 (89%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF  
Sbjct: 67  ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA 126

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG++KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 127 INTEVVACSVDSQFTHLAWINTPRKQGGLGEMKIPLLSDLTHQISKDYGVYLEDQGHTLR 186

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           GLFIID  G+LRQITMNDLPVGRSVDETLRLVQAF    + G +
Sbjct: 187 GLFIIDNKGILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 230

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148234128|ref|NP_001088817.1| uncharacterized protein LOC496089 precursor [Xenopus laevis] gi|56269242|gb|AAH87512.1| LOC496089 protein [Xenopus laevis]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/156 (82%), Positives = 142/156 (91%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SK AP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct: 78  ISKAAPYWEGTAVINGEFKELKLTDYKGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRS 137

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 138 INTEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 197

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 198 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQ 233

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326913542|ref|XP_003203096.1| PREDICTED: peroxiredoxin-4-like [Meleagris gallopavo]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/156 (81%), Positives = 143/156 (91%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF+DR+EEF  
Sbjct: 124 LSKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 183

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 184 INTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 243

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID   +LRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 244 GLFIIDDKRILRQITMNDLPVGRSVDETLRLVQAFQ 279

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
UNIPROTKB|Q13162	271	PRDX4 "Peroxiredoxin-4" [Homo	0.518	0.571	0.812	1e-68
UNIPROTKB|E2RNL3	272	PRDX4 "Uncharacterized protein	0.548	0.602	0.774	1.7e-68
UNIPROTKB|F1NNS8	288	PRDX4 "Uncharacterized protein	0.518	0.538	0.812	5.6e-68
ZFIN|ZDB-GENE-030131-1096	260	prdx4 "peroxiredoxin 4" [Danio	0.518	0.596	0.819	7.2e-68
UNIPROTKB|F1SQ01	272	PRDX4 "Uncharacterized protein	0.518	0.569	0.793	1.9e-67
MGI|MGI:1859815	274	Prdx4 "peroxiredoxin 4" [Mus m	0.518	0.565	0.8	1.9e-67
RGD|620043	273	Prdx4 "peroxiredoxin 4" [Rattu	0.518	0.567	0.8	1.9e-67
UNIPROTKB|Q9BGI2	274	PRDX4 "Peroxiredoxin-4" [Bos t	0.518	0.565	0.780	1.1e-66
FB|FBgn0040308	242	Jafrac2 "thioredoxin peroxidas	0.521	0.644	0.75	3.8e-62
UNIPROTKB|F1SDX9	198	PRDX2 "Peroxiredoxin-2" [Sus s	0.518	0.782	0.748	5e-60

UNIPROTKB|Q13162 PRDX4 "Peroxiredoxin-4" [Homo sapiens (taxid:9606)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 126/155 (81%), Positives = 142/155 (91%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct:    81 ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 140

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct:   141 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 200

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct:   201 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 235

GO:0005615 "extracellular space" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=TAS

GO:0008379 "thioredoxin peroxidase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RNL3 PRDX4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 127/164 (77%), Positives = 145/164 (88%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct:    82 ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 141

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG +KIPLLSDLTH+IS DYGVYL D GHTLR
Sbjct:   142 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYLEDSGHTLR 201

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
             GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF    R G +
Sbjct:   202 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEV 245

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

UNIPROTKB|F1NNS8 PRDX4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 126/155 (81%), Positives = 142/155 (91%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF+DR+EEF  
Sbjct:    98 ISKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 157

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGH LR
Sbjct:   158 INTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHALR 217

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID   +LRQITMNDLPVGRSVDETLRLVQAF
Sbjct:   218 GLFIIDDKRILRQITMNDLPVGRSVDETLRLVQAF 252

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030131-1096 prdx4 "peroxiredoxin 4" [Danio rerio (taxid:7955)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 127/155 (81%), Positives = 141/155 (90%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF  
Sbjct:    70 ISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFQA 129

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             IN EVVA SVDS FTHLAW+NTPRK+GGLG +KIPLLSDLTH+IS DYGV+L DQGHTLR
Sbjct:   130 INAEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGVFLEDQGHTLR 189

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF
Sbjct:   190 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAF 224

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1SQ01 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 123/155 (79%), Positives = 141/155 (90%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct:    82 ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRS 141

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL D GHTLR
Sbjct:   142 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLR 201

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct:   202 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 236

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

MGI|MGI:1859815 Prdx4 "peroxiredoxin 4" [Mus musculus (taxid:10090)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 124/155 (80%), Positives = 141/155 (90%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct:    84 ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 143

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL D GHTLR
Sbjct:   144 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLR 203

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  GVLRQIT+NDLPVGRSVDETLRLVQAF
Sbjct:   204 GLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAF 238

GO:0003674 "molecular_function" evidence=ND

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IDA

RGD|620043 Prdx4 "peroxiredoxin 4" [Rattus norvegicus (taxid:10116)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 124/155 (80%), Positives = 141/155 (90%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR+EEF  
Sbjct:    83 ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 142

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDL H+IS DYGVYL D GHTLR
Sbjct:   143 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLR 202

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  GVLRQIT+NDLPVGRSVDETLRLVQAF
Sbjct:   203 GLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAF 237

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|Q9BGI2 PRDX4 "Peroxiredoxin-4" [Bos taurus (taxid:9913)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 121/155 (78%), Positives = 140/155 (90%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             +SKPAP+W+GTAV++G+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DR++EF  
Sbjct:    84 ISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIDEFRS 143

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             INTEVVA SVDS FTHLAW+NTPR++GGLG + IPLL+DL H+IS DYGVYL D GHTLR
Sbjct:   144 INTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLR 203

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct:   204 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 238

GO:0005576 "extracellular region" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

FB|FBgn0040308 Jafrac2 "thioredoxin peroxidase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/156 (75%), Positives = 136/156 (87%)

Query:    66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
             ++SKPAP ++GTAVV+ ++ ++ LS Y GKY+V  FYPLDFTFVCPTEI+AF+DR+ EF 
Sbjct:    51 VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEIIAFSDRIAEFK 110

Query:   126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
             +I TEV+  SVDSHFTHLAW+NTPRKEGGLG +KIPLLSDLTHKIS DYGVYL   GH L
Sbjct:   111 KIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSDLTHKISKDYGVYLESSGHAL 170

Query:   186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             RGLFIID+ GVLRQITMNDLPVGRSVDET+RLVQAF
Sbjct:   171 RGLFIIDQTGVLRQITMNDLPVGRSVDETIRLVQAF 206

GO:0008379 "thioredoxin peroxidase activity" evidence=ISS;IDA;NAS

GO:0016209 "antioxidant activity" evidence=ISS;NAS

GO:0004601 "peroxidase activity" evidence=NAS

GO:0005576 "extracellular region" evidence=IDA;NAS

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IGI;IMP;IPI

GO:0006915 "apoptotic process" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|F1SDX9 PRDX2 "Peroxiredoxin-2" [Sus scrofa (taxid:9823)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 116/155 (74%), Positives = 130/155 (83%)

Query:    67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
             + KPAP +Q TAVV+G  KE+KLSDY GKYLV FFYPLDFTFVCPTEI+AF+DR EEFHQ
Sbjct:     8 IGKPAPEFQATAVVNGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSDRAEEFHQ 67

Query:   127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
             +  EV+  SVDS FTHLAW+NTPRKEGGLG LKIPLL+D+T  +SLDYGV   D+G   R
Sbjct:    68 LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYR 127

Query:   187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF
Sbjct:   128 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 162

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74887	TSA1_SCHPO	1, ., 1, 1, ., 1, ., 1, 5	0.6153	0.5217	0.8125	yes	N/A
Q6ER94	BAS1_ORYSJ	1, ., 1, 1, ., 1, ., 1, 5	0.5822	0.5250	0.6015	yes	N/A
Q13162	PRDX4_HUMAN	1, ., 1, 1, ., 1, ., 1, 5	0.8076	0.5217	0.5756	yes	N/A
P34760	TSA1_YEAST	1, ., 1, 1, ., 1, ., 1, 5	0.5548	0.5484	0.8367	yes	N/A
Q9Z0V5	PRDX4_RAT	1, ., 1, 1, ., 1, ., 1, 5	0.7948	0.5217	0.5714	yes	N/A
Q555L5	PRDX4_DICDI	1, ., 1, 1, ., 1, ., 1, 5	0.6451	0.5183	0.5984	yes	N/A
Q9C5R8	BAS1B_ARATH	1, ., 1, 1, ., 1, ., 1, 5	0.5886	0.5250	0.5750	yes	N/A
Q9BGI2	PRDX4_BOVIN	1, ., 1, 1, ., 1, ., 1, 5	0.7756	0.5217	0.5693	yes	N/A
O08807	PRDX4_MOUSE	1, ., 1, 1, ., 1, ., 1, 5	0.7948	0.5217	0.5693	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.15	0.914
3rd Layer	1.11.1	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	6e-93
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	4e-72
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	1e-66
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	5e-50
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	6e-47
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	3e-45
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	9e-42
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	4e-41
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	6e-33
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	2e-31
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	3e-29
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	3e-28
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	3e-28
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	4e-27
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	2e-26
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	3e-26
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	3e-24
cd03014	143	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family,	6e-11
pfam08534	142	pfam08534, Redoxin, Redoxin	2e-10
PRK00522	167	PRK00522, tpx, lipid hydroperoxide peroxidase; Pro	3e-06
PRK09437	154	PRK09437, bcp, thioredoxin-dependent thiol peroxid	5e-06
COG2077	158	COG2077, Tpx, Peroxiredoxin [Posttranslational mod	6e-06

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score =  272 bits (698), Expect = 6e-93
 Identities = 102/156 (65%), Positives = 123/156 (78%), Gaps = 1/156 (0%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           V K AP ++ TAVV +G+ KEI LSDY GK++V FFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 1   VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFK 60

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N EV+  S DSHF+HLAW NTPRKEGGLGK+  PLL+D   KIS DYGV   ++G  L
Sbjct: 61  KLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVAL 120

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RG FIID  G++R IT+NDLPVGRSVDETLR++ A 
Sbjct: 121 RGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  220 bits (562), Expect = 4e-72
 Identities = 84/168 (50%), Positives = 114/168 (67%), Gaps = 5/168 (2%)

Query: 66  LVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           L+ K AP +   AV+ G+  +EI LSDYYGK++V FFYP DFTFVCPTEI+AF  R EEF
Sbjct: 4   LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEF 63

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            +   EV+  S DS F+H AW  T R+ GG+GK+K P+++D   +I+  YGV   ++G  
Sbjct: 64  QKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLA 123

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAING 232
           LRG FIID +GV+R I +N L +GR+VDE LR++ A    L+  A +G
Sbjct: 124 LRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA----LQFVAKHG 167

Length = 194

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score =  206 bits (526), Expect = 1e-66
 Identities = 84/157 (53%), Positives = 117/157 (74%), Gaps = 1/157 (0%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           ++ PAP ++  A++ +G  K+I LS Y GK++V FFYPLDFTFVCPTEI+ F+D ++ F+
Sbjct: 8   INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFN 67

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N EV+A S+DS + HL W    RK+GGLG + IP+L+D T  I+  YGV   +QG   
Sbjct: 68  ELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAY 127

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQIT+ND+PVGR+V+E LRL++AF 
Sbjct: 128 RGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164

Length = 199

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score =  161 bits (411), Expect = 5e-50
 Identities = 58/140 (41%), Positives = 76/140 (54%), Gaps = 9/140 (6%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +      E+ LSD+ GK++V FFYP DFT VC TE+ AF D  EEF +   EV+  SVDS
Sbjct: 7   LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLRGLFIIDRNG 195
            F+H AW          G L  PLLSD   + +  YGV +      G   R  FIID +G
Sbjct: 67  PFSHKAWAEK------EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDG 120

Query: 196 VLRQITMNDLPVGRSVDETL 215
            +R + +  LP GR+ +E L
Sbjct: 121 KIRYVEVEPLPTGRNAEELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score =  158 bits (400), Expect = 6e-47
 Identities = 71/166 (42%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           LV K  P ++GTA+++  L +   SDY+   Y +  FYPLDFTFVCP+E+L F++RL+EF
Sbjct: 69  LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEF 128

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            +   +V+  SVDS F+H AW     ++GG+  LK PL SD++ ++S  +G+ L D+G +
Sbjct: 129 EERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGL-LRDEGFS 187

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
            R   ++D+ GV++ + + DL +GRSVDETLRL  A     +TG +
Sbjct: 188 HRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNV 233

Length = 261

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score =  151 bits (383), Expect = 3e-45
 Identities = 73/163 (44%), Positives = 107/163 (65%), Gaps = 5/163 (3%)

Query: 66  LVSKPAPFWQGTAVV-DGQLKE-IKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLE 122
           LV++ AP +   AV+  G++ +      +  GK  V FF+P+DFTFVCP+E++AF+ R E
Sbjct: 3   LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYE 62

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           EF +   EVV  S DS F H AW NTP  +GG+G +K  +++D+  +I   YG+   D+G
Sbjct: 63  EFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEG 122

Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA--FHD 223
             LRG F+ID NG++R   +NDLP+GR++DE LR+V A  FH+
Sbjct: 123 VALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHE 165

Length = 200

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score =  142 bits (360), Expect = 9e-42
 Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L++     ++ TA  +G+  E+   D  GK+ VFFFYP DFTFVCPTE+    D   E  
Sbjct: 3   LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELK 62

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++  EV + S D+HF H AW +T      +GK+  P+L D T  ++ ++GV + + G   
Sbjct: 63  KLGVEVYSVSTDTHFVHKAWHDTSEA---IGKITYPMLGDPTGVLTRNFGVLIEEAGLAD 119

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
           RG F+ID  GV++ + ++D  +GR   E LR ++A
Sbjct: 120 RGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKA 154

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score =  138 bits (350), Expect = 4e-41
 Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 12/135 (8%)

Query: 67  VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           V   AP F     + D   KE+ LSDY GK++V FFYP DFT VC TE+ A  D  EEF 
Sbjct: 1   VGDKAPDF----ELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK 56

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++  EV+  SVDS  +H  +            L  PLLSD   +++  YGV   ++G  L
Sbjct: 57  KLGVEVLGVSVDSPESHKKFAEKL-------GLPFPLLSDPDGEVAKAYGVLNEEEGLAL 109

Query: 186 RGLFIIDRNGVLRQI 200
           R  F+ID +G +R I
Sbjct: 110 RTTFVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score =  120 bits (303), Expect = 6e-33
 Identities = 56/138 (40%), Positives = 89/138 (64%), Gaps = 3/138 (2%)

Query: 86  EIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
            IKL D Y GK+ V F +P DFT VC TE +AF  R +EF ++NTE++  S+D  F+H+ 
Sbjct: 26  PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIK 85

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITMN 203
           WV   +++ G+ +++ P+++D   +I+   G+    +G +T+R +FIID  G++R I   
Sbjct: 86  WVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYY 144

Query: 204 DLPVGRSVDETLRLVQAF 221
              VGR++DE LRLV+A 
Sbjct: 145 PQEVGRNMDEILRLVKAL 162

Length = 222

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score =  115 bits (289), Expect = 2e-31
 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 72  PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 131
           PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++  +V
Sbjct: 10  PF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDV 68

Query: 132 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFII 191
            + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   R  F++
Sbjct: 69  YSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVV 125

Query: 192 DRNGVLRQITMNDLPVGRSVDETLRLVQA 220
           D  G+++ I +    +GR   + LR ++A
Sbjct: 126 DPQGIIQAIEVTAEGIGRDASDLLRKIKA 154

Length = 187

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score =  109 bits (275), Expect = 3e-29
 Identities = 50/134 (37%), Positives = 87/134 (64%), Gaps = 1/134 (0%)

Query: 87  IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 146
           I LS Y GK+++ F +P DFT VC TE +AF+ R E+F ++  E+V  SVDS ++H+AW+
Sbjct: 20  IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79

Query: 147 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP 206
               +  G+ K+  P+++D+  +++ +Y +   + G T+RG+FIID N ++R +      
Sbjct: 80  RDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAE 138

Query: 207 VGRSVDETLRLVQA 220
            GR++DE +R+ +A
Sbjct: 139 TGRNIDEIIRITKA 152

Length = 202

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score =  107 bits (270), Expect = 3e-28
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 80  VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
            D     IK  DY G  + + F +P DFT VC TE+ AF     EF + N +++  SVDS
Sbjct: 10  ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL--RGLFIIDRNGV 196
             +H+ W+    +E    ++  P+++D   +++   G+   D G TL  R +FIID +  
Sbjct: 70  VESHIKWIEDI-EEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKK 128

Query: 197 LRQITMNDLPVGRSVDETLRLVQAF 221
           +R I       GR+ DE LR+V A 
Sbjct: 129 IRLILYYPATTGRNFDEILRVVDAL 153

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score =  108 bits (270), Expect = 3e-28
 Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query: 80  VDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           V     +IKL D Y G++ V F +P DFT VC TE  +F  + EEF ++NTE++  SVDS
Sbjct: 18  VITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG-VYLSDQGHTLRGLFIIDRNGVL 197
           + +H+ WV    K   + ++  P+++D    ++   G ++      T+R +FI+D  G +
Sbjct: 78  NISHIEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTV 136

Query: 198 RQITMNDLPVGRSVDETLRLVQA 220
           R I    + +GR++DE LR ++A
Sbjct: 137 RLILYYPMEIGRNIDEILRAIRA 159

Length = 215

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score =  102 bits (257), Expect = 4e-27
 Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 13/144 (9%)

Query: 79  VVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137
           + D   +E++LS++ G K +V  F+PL FT VC  E+ A  D LE F     EV+  SVD
Sbjct: 12  LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71

Query: 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL-TH-KISLDYGVYLSDQGHTLRGLFIIDRNG 195
           S F+  AW     +E GL     PLLSD   H +++  YGV+  D G   R +F+IDR+G
Sbjct: 72  SPFSLRAW----AEENGLT---FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDG 124

Query: 196 VLRQITMNDLPVGRS---VDETLR 216
           ++R   ++D    R     DE L 
Sbjct: 125 IIRYAWVSDDGEPRDLPDYDEALD 148

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score =  103 bits (257), Expect = 2e-26
 Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 2/133 (1%)

Query: 91  DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 150
           DY GK+ V F +P DFT VC TE + F  +  +F ++NTE++  SVD  F+H+ WV   +
Sbjct: 25  DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIK 84

Query: 151 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITMNDLPVGR 209
               +  +  P+++D   K+S   G+    +G +T+R +FI+D  G +R I      VGR
Sbjct: 85  DNTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGR 143

Query: 210 SVDETLRLVQAFH 222
           +VDE LR ++A  
Sbjct: 144 NVDEILRALKALQ 156

Length = 215

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  100 bits (252), Expect = 3e-26
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
           + + LSD  GK +V +FYP DFT  C TE   F D LEEF ++   V+  S DS  +H  
Sbjct: 21  ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKK 80

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH------TLRGLFIIDRNGVLR 198
           +     K G    L  PLLSD   +++  YGV+   + +        R  F+ID +G +R
Sbjct: 81  FAE---KHG----LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIR 133

Query: 199 QITMNDLPVGRSVDETLRLVQAF 221
            +    + V    DE L  ++  
Sbjct: 134 YV-WRKVKVKGHADEVLAALKKL 155

Length = 157

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 94.9 bits (237), Expect = 3e-24
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
           + + LSD  GK +V +FYP D T  C  E   F D  EEF  +   V+  S DS  +H  
Sbjct: 14  ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAK 73

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL---RGLFIIDRNGVLRQIT 201
           +     K G    L  PLLSD   K++  YGV+   +   +   R  F+ID +G + ++ 
Sbjct: 74  FAE---KYG----LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV- 125

Query: 202 MNDLPVGRSVDETLR 216
              +      +E L 
Sbjct: 126 WRKVKPKGHAEEVLE 140

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

 Score = 59.1 bits (144), Expect = 6e-11
 Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFH 125
           V   AP +    +V   L E+ L+D+ GK  V   +P +D T VC T+   FN    +  
Sbjct: 2   VGDKAPDF---TLVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLD 57

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHT 184
             NT V+  S D  F    W        G+  +    LSD   H     YGV + D G  
Sbjct: 58  --NTVVLTISADLPFAQKRWCGAE----GVDNVTT--LSDFRDHSFGKAYGVLIKDLGLL 109

Query: 185 LRGLFIIDRNGVLR 198
            R +F+ID NG + 
Sbjct: 110 ARAVFVIDENGKVI 123

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 80  VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVA-ASVDS 138
           V    K + LSD+ GK +V  F+P  F   C  E        + +     +VVA  + + 
Sbjct: 13  VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNASND 72

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLR 198
            F  + +     KEG    LK P+L+D     +  YG+   D G      F+ID +G + 
Sbjct: 73  PFFVMNFWA---KEG----LKYPVLADRDGAFTKAYGLTE-DAGLRTPRYFLIDEDGKVV 124

Query: 199 QITMNDLPVGRS 210
            + +   P   S
Sbjct: 125 YLEVGPDPGDVS 136

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137
           +V   L ++ L+D+ GK  V   +P +D T VC T +  FN    E    NT V+  S D
Sbjct: 29  LVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAAELD--NTVVLCISAD 85

Query: 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQ---GHTLRGLFIIDR 193
             F    +        GL  +    LSD   H     YGV +++    G   R +F++D 
Sbjct: 86  LPFAQKRFCGAE----GLENVI--TLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDE 139

Query: 194 NGVLR 198
           N  + 
Sbjct: 140 NNKVV 144

Length = 167

>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 25/128 (19%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
           +++ L+D+ G+ ++ +FYP   T  C  +     D ++E  +    V+  S D       
Sbjct: 21  EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK------ 74

Query: 145 WVNTPRKEGGLGK------LKIPLLSDLTHKISLDYGVYLSDQ--GHTLRGL----FIID 192
               P K   L +      L   LLSD  H+++  +GV+   +  G T  G+    F+ID
Sbjct: 75  ----PEK---LSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLID 127

Query: 193 RNGVLRQI 200
            +G +  +
Sbjct: 128 ADGKIEHV 135

Length = 154

>gnl|CDD|224988 COG2077, Tpx, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137
           +V   L ++ L+D+ GK  V   +P +D T VC T++  FN+   +    NT V+  S+D
Sbjct: 29  LVGKDLNDVSLADFAGKKKVISVFPSID-TPVCATQVRKFNEEAAKLG--NTVVLCISMD 85

Query: 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL-DYGVYLSD---QGHTLRGLFIIDR 193
             F    +        G+  +    LSD   +    +YGV +++    G   R +F++D 
Sbjct: 86  LPFAQKRFCGAE----GIENVIT--LSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDE 139

Query: 194 NGV 196
           NG 
Sbjct: 140 NGK 142

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	100.0
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	100.0
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	100.0
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.98
PRK15000	200	peroxidase; Provisional	99.98
PRK13190	202	putative peroxiredoxin; Provisional	99.97
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.97
PRK13599	215	putative peroxiredoxin; Provisional	99.97
PRK13191	215	putative peroxiredoxin; Provisional	99.97
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.97
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.97
PRK13189	222	peroxiredoxin; Provisional	99.97
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.97
KOG0852|consensus	196		99.96
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.96
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.95
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.95
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.95
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.94
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.94
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.94
KOG0854|consensus	224		99.93
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.92
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.91
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.91
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.89
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.89
PTZ00056	199	glutathione peroxidase; Provisional	99.89
PLN02412	167	probable glutathione peroxidase	99.89
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.89
PTZ00256	183	glutathione peroxidase; Provisional	99.88
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.88
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.88
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.87
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.87
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.86
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.85
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.85
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.85
KOG0855|consensus	211		99.85
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.83
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.81
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.8
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.79
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.77
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.77
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.77
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.77
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.73
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.68
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.66
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.66
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.59
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	99.53
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.51
KOG3619|consensus	867		99.5
KOG0541|consensus	171		99.4
KOG2792|consensus	280		99.36
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.31
KOG4171|consensus	671		99.28
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.25
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.23
KOG2501|consensus	157		99.22
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.21
KOG1023|consensus	484		99.06
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.04
KOG1651|consensus	171		99.02
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.0
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.99
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.98
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.93
KOG3618|consensus	1318		98.89
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.86
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.84
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.79
PRK09381	109	trxA thioredoxin; Provisional	98.74
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.74
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.72
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.7
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.65
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.64
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.63
PRK10996	139	thioredoxin 2; Provisional	98.62
PHA02278	103	thioredoxin-like protein	98.6
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.59
KOG0907|consensus	106		98.58
KOG0910|consensus	150		98.57
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.56
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.54
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.52
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.52
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.49
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.48
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.47
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.46
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.45
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.45
PTZ00051	98	thioredoxin; Provisional	98.44
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.42
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.37
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.36
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.36
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.35
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.34
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.32
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.31
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.31
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.3
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.29
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	98.27
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.27
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.24
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.23
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.22
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.22
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.2
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.19
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.17
PF13728	215	TraF: F plasmid transfer operon protein	98.15
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.15
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.14
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.12
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.08
PLN02309	457	5'-adenylylsulfate reductase	97.97
PTZ00062	204	glutaredoxin; Provisional	97.95
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.86
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.85
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.83
PTZ00102	477	disulphide isomerase; Provisional	97.82
PF00211	184	Guanylate_cyc: Adenylate and Guanylate cyclase cat	97.81
PTZ00102	477	disulphide isomerase; Provisional	97.76
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.71
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.67
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.67
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.63
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	97.62
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	97.56
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.53
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.49
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.47
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.47
KOG4498|consensus	197		97.47
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.28
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.26
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.05
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.04
KOG0908|consensus	288		97.04
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.98
smart00594	122	UAS UAS domain.	96.93
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.89
PHA02125	75	thioredoxin-like protein	96.81
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	96.59
KOG0190|consensus	493		96.53
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.45
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	95.18
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	95.17
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	94.93
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	94.89
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	94.55
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	94.55
KOG0190|consensus	493		94.3
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	93.71
KOG0191|consensus	383		93.61
cd07302	177	CHD cyclase homology domain. Catalytic domains of	93.61
KOG3618|consensus	1318		93.6
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	93.56
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	93.54
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	93.22
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.09
KOG0912|consensus	375		93.02
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	92.56
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	92.15
PRK11200	85	grxA glutaredoxin 1; Provisional	90.97
KOG3425|consensus	128		90.95
COG2143	182	Thioredoxin-related protein [Posttranslational mod	90.94
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	90.46
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	89.54
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	89.26
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	89.07
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	88.89
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	88.24
PF07976	169	Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim	87.19
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	86.92
PHA03050	108	glutaredoxin; Provisional	86.71
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	85.74
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	85.29
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	85.12
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	84.88
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	84.58
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	82.8
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	82.52
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	82.4
PRK10329	81	glutaredoxin-like protein; Provisional	81.81
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	81.09
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	80.6
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	80.57
TIGR03765	105	ICE_PFL_4695 integrating conjugative element prote	80.21

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-33  Score=233.76  Aligned_cols=168  Identities=48%  Similarity=0.862  Sum_probs=157.1

Q ss_pred             ccCCCCCCCCcEEeeeeCCCC---ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQL---KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G---~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ++.+|+++|+|+.+++.  .|   .+++|+|+.|||+||+|||+.++++|++|+..+++.|++|+++|++||+||+|+.+
T Consensus         2 ~~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~f   79 (194)
T COG0450           2 MSLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVF   79 (194)
T ss_pred             ccccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHH
Confidence            46789999999999763  44   49999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++.+|.+..++..++++++||+++|++++++++|||..+..|.+.|++|||||+|+|+++.+++...|++.+++++.+++
T Consensus        80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA  159 (194)
T COG0450          80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA  159 (194)
T ss_pred             HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999989998888999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             ccCCCCCCccccc
Q psy16151        221 FHDPLRTGAINGL  233 (299)
Q Consensus       221 L~~~~~g~~vn~a  233 (299)
                      +|....++.+..|
T Consensus       160 lq~~~~hg~vcPa  172 (194)
T COG0450         160 LQFVAKHGEVCPA  172 (194)
T ss_pred             HHHHHHhCCCccC
Confidence            9987776776555

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-33  Score=224.94  Aligned_cols=149  Identities=33%  Similarity=0.489  Sum_probs=138.0

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      +.+.+|++||||+|+   +++|+.++|+||+||+|||+|||..++|.|..|+..|++.+++|++.|++|+|||.|+++++
T Consensus         2 ~~l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~   78 (157)
T COG1225           2 MMLKVGDKAPDFELP---DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH   78 (157)
T ss_pred             CcCCCCCcCCCeEee---cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence            468999999999999   77999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR  216 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~  216 (299)
                      ++|.+++       +++||+|+|++.+++++||+......      ...|++||||++|+|++.+ .......|.+++++
T Consensus        79 ~~F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~  150 (157)
T COG1225          79 KKFAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLA  150 (157)
T ss_pred             HHHHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHH
Confidence            9999987       99999999999999999999876431      3579999999999999999 66777889999999


Q ss_pred             HHhhcc
Q psy16151        217 LVQAFH  222 (299)
Q Consensus       217 ~l~~L~  222 (299)
                      .++.+.
T Consensus       151 ~l~~l~  156 (157)
T COG1225         151 ALKKLA  156 (157)
T ss_pred             HHHHhc
Confidence            998764

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=100.00  E-value=5.2e-32  Score=229.81  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=147.2

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      +.+|+++|+|+.+...+.+...++|+||+||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+++.+++
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a   81 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   81 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence            56899999999999878888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      |.+..+..   .+++||+++|++++++++||+..+..|.+.|++||||++|+|++++.+....+++.+++++.++++|..
T Consensus        82 ~~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~  158 (187)
T PRK10382         82 WHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYV  158 (187)
T ss_pred             HHHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhH
Confidence            99875321   278999999999999999999765556677999999999999999988888899999999999999986


Q ss_pred             CCC-Cccc
Q psy16151        225 LRT-GAIN  231 (299)
Q Consensus       225 ~~g-~~vn  231 (299)
                      ... +.+.
T Consensus       159 ~~~~g~~~  166 (187)
T PRK10382        159 ASHPGEVC  166 (187)
T ss_pred             hhcCCeEe
Confidence            654 4443

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.98  E-value=1.6e-31  Score=236.37  Aligned_cols=170  Identities=41%  Similarity=0.757  Sum_probs=149.2

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ..+.+|+.+|+|+++++.+++++.++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.
T Consensus        66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~  145 (261)
T PTZ00137         66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS  145 (261)
T ss_pred             ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            456899999999998643556678999998 8999999999999999999999999999999999999999999999989


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++|.+...+..+..+++||+++|++++++++||+... .|.+.|++||||++|+|++.+.++...+++.+++++.++++
T Consensus       146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            99999864444344478999999999999999999753 36678999999999999999988889999999999999999


Q ss_pred             cCCCCCCccccc
Q psy16151        222 HDPLRTGAINGL  233 (299)
Q Consensus       222 ~~~~~g~~vn~a  233 (299)
                      |.....+.+..|
T Consensus       225 q~~~~~g~~cPa  236 (261)
T PTZ00137        225 QFAEKTGNVCPV  236 (261)
T ss_pred             chhhhcCCCcCC
Confidence            987776666544

>PRK15000 peroxidase; Provisional

Probab=99.98  E-value=2.8e-31  Score=228.03  Aligned_cols=186  Identities=40%  Similarity=0.705  Sum_probs=153.0

Q ss_pred             CCCCCCCCcEEeeeeCCCCce---EEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKE---IKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~---v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      .+|+.+|+|+++++ ..+|+.   ++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+++.
T Consensus         3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~   81 (200)
T PRK15000          3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV   81 (200)
T ss_pred             cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            47999999999865 334554   566666 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++|.+..++..++.+++||+++|+++++++.||+.....|...|++||||++|+|++.+.+..+.+++.+++++.++++
T Consensus        82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000         82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99998876555544467999999999999999999876667788999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccc--cceeccceechHHHHHHHh
Q psy16151        222 HDPLRTGAINGL--SLLVIGLFQVTEKTCDILE  252 (299)
Q Consensus       222 ~~~~~g~~vn~a--st~~~~~i~~s~~~~~~L~  252 (299)
                      +....++.+..|  .-|...-...++-+.+.+.
T Consensus       162 ~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~  194 (200)
T PRK15000        162 QFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLA  194 (200)
T ss_pred             hhHHhcCCCcCCCCCCCCceeccCHHHHHHHHH
Confidence            987666666544  2233322333444444443

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.97  E-value=6e-31  Score=226.58  Aligned_cols=161  Identities=32%  Similarity=0.619  Sum_probs=141.9

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      +.+|+.+|+|++++   ..| .++|++++||++||+||+++|||+|+.|++.|++++++|+++|++|++||+|+.+.+.+
T Consensus         2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~   77 (202)
T PRK13190          2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA   77 (202)
T ss_pred             CCCCCCCCCcEEec---CCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            67899999999984   355 69999999999999888899999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      |.+.+.+..++ .++||+++|++++++++||+.....|...|++||||++|+|+++..++...+++.+++++.+++++..
T Consensus        78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~  156 (202)
T PRK13190         78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVN  156 (202)
T ss_pred             HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhH
Confidence            99876544322 46899999999999999999766556678999999999999999988888899999999999999986


Q ss_pred             CCCCcc
Q psy16151        225 LRTGAI  230 (299)
Q Consensus       225 ~~g~~v  230 (299)
                      ...+.+
T Consensus       157 ~~~~~~  162 (202)
T PRK13190        157 WKRKVA  162 (202)
T ss_pred             HhcCCC
Confidence            554433

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.97  E-value=5.8e-31  Score=226.35  Aligned_cols=163  Identities=52%  Similarity=0.930  Sum_probs=144.3

Q ss_pred             cccCCCCCCCCcEEeee-eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         63 CFKLVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~-~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ..+.+|+++|+|+++++ .+.+|++++|+||+||++||+||+++||++|+.+++.|++++++|+++|++||+||+|+.+.
T Consensus         4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~   83 (199)
T PTZ00253          4 GDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA   83 (199)
T ss_pred             cccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence            34678999999998763 25678999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|....+..++.+.++||+++|+++++++.||++....|...|++||||++|+|++.+.+....+++.+++++.++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253         84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            89997654433334468999999999999999999876667778999999999999999988888999999999999999


Q ss_pred             cCCC
Q psy16151        222 HDPL  225 (299)
Q Consensus       222 ~~~~  225 (299)
                      +...
T Consensus       164 ~~~~  167 (199)
T PTZ00253        164 QFVE  167 (199)
T ss_pred             hhHH
Confidence            8644

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.97  E-value=2.1e-30  Score=224.70  Aligned_cols=183  Identities=31%  Similarity=0.458  Sum_probs=150.8

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      ..+|+.+|+|+++   +.+|+...+++++||++||+|++++|||+|+.|++.|++++++|+++|++||+||+|+.+++.+
T Consensus         2 ~~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~   78 (215)
T PRK13599          2 KLLGEKFPSMEVV---TTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK   78 (215)
T ss_pred             CCCCCCCCCCEeE---CCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            3689999999998   5588888889999999988888999999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC-CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g-~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      |.+..++..+ .+++||+++|+++++++.||+.....+ ...|++||||++|+|++++.++...+++.+++++.+++|+.
T Consensus        79 w~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~  157 (215)
T PRK13599         79 WVEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT  157 (215)
T ss_pred             HHHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence            9886543211 168999999999999999999754333 25799999999999999998888889999999999999987


Q ss_pred             CCC---CCccccc-----cceeccceechHHHHHHH
Q psy16151        224 PLR---TGAINGL-----SLLVIGLFQVTEKTCDIL  251 (299)
Q Consensus       224 ~~~---g~~vn~a-----st~~~~~i~~s~~~~~~L  251 (299)
                      ...   ..++||.     +..+.-...++.+-++..
T Consensus       158 ~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~  193 (215)
T PRK13599        158 ADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANER  193 (215)
T ss_pred             hhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHh
Confidence            554   3344554     455554445565555444

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.97  E-value=1.5e-30  Score=225.84  Aligned_cols=163  Identities=33%  Similarity=0.586  Sum_probs=141.3

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEc-CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~L-sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+.+|+.+|+|+++   +.+|+ +.+ ++++|||+||+||+++|||+|+.|++.|++++++|+++|++|++||+|+.+.+
T Consensus         6 ~~~iG~~aPdF~l~---~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h   81 (215)
T PRK13191          6 IPLIGEKFPEMEVI---TTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH   81 (215)
T ss_pred             cccCCCcCCCCEee---cCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            56789999999998   44676 555 55899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+|.+..++..+. +++||+++|++++++++||+..... +...|++||||++|+|++++.++...+++++++++.++++
T Consensus        82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191         82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            9998866543333 6899999999999999999975432 4568999999999999999999999999999999999999


Q ss_pred             cCCCCCCccc
Q psy16151        222 HDPLRTGAIN  231 (299)
Q Consensus       222 ~~~~~g~~vn  231 (299)
                      +.....+.+.
T Consensus       161 q~~~~~~~~~  170 (215)
T PRK13191        161 QLVDKAGVVT  170 (215)
T ss_pred             hhhhhcCCCc
Confidence            9866655443

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.97  E-value=4.9e-30  Score=215.90  Aligned_cols=164  Identities=63%  Similarity=1.059  Sum_probs=141.5

Q ss_pred             CCCCCCCcEEeeeeC-CCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         67 VSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~-~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      +|+++|+|++++..+ ++|+.++|++++||++||+||+++|||.|+.+++.|++++++|+++|+.|++||.|+.+...+|
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~   80 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW   80 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence            599999999986533 3448999999999999999999999999999999999999999999999999999998888889


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCC
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPL  225 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~  225 (299)
                      .+...+..+..+++||+++|+++++++.||+.....|...|++||||++|+|++++.+..+.+++.+++++.|+.++.+.
T Consensus        81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~  160 (173)
T cd03015          81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE  160 (173)
T ss_pred             HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence            88754321122689999999999999999998766566789999999999999999877777788999999999988777


Q ss_pred             CCCcc
Q psy16151        226 RTGAI  230 (299)
Q Consensus       226 ~g~~v  230 (299)
                      ..+.+
T Consensus       161 ~~~~~  165 (173)
T cd03015         161 EHGEV  165 (173)
T ss_pred             hcCCC
Confidence            65555

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR03137 AhpC peroxiredoxin

Probab=99.97  E-value=3.3e-30  Score=219.56  Aligned_cols=163  Identities=36%  Similarity=0.674  Sum_probs=140.0

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      .+|+.+|+|+++++.++....+++++|+||++||+||+++|||+|+.+++.|++++++|+++|++|++||.|+++.+++|
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~   82 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW   82 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence            56999999999854333334789999999999999999999999999999999999999999999999999999989999


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCC
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPL  225 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~  225 (299)
                      .+.....   .+++||+++|+++++++.||+.....|...|++||||++|+|++++......+++.+++++.|++++...
T Consensus        83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~  159 (187)
T TIGR03137        83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVA  159 (187)
T ss_pred             Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence            8764222   2688999999999999999998665566679999999999999999877777789999999999998866


Q ss_pred             CC-Cccc
Q psy16151        226 RT-GAIN  231 (299)
Q Consensus       226 ~g-~~vn  231 (299)
                      .. +.++
T Consensus       160 ~~~~~~~  166 (187)
T TIGR03137       160 AHPGEVC  166 (187)
T ss_pred             hcCCeee
Confidence            54 3443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13189 peroxiredoxin; Provisional

Probab=99.97  E-value=1.7e-29  Score=220.28  Aligned_cols=165  Identities=35%  Similarity=0.617  Sum_probs=142.9

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      ++.+|+.+|+|+++++   +|+ ++++++ +|||+||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus         8 ~~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h   83 (222)
T PRK13189          8 MPLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH   83 (222)
T ss_pred             cccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence            5778999999999843   554 788875 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+|.+.+++..+. .++||+++|++++++++||+..... +...|++||||++|+|+++..++...+++.+++++.++++
T Consensus        84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189         84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            9999886543322 5799999999999999999975432 3467999999999999999988888999999999999999


Q ss_pred             cCCCCCCccccc
Q psy16151        222 HDPLRTGAINGL  233 (299)
Q Consensus       222 ~~~~~g~~vn~a  233 (299)
                      +.....+.+..|
T Consensus       163 q~~~~~~~~~p~  174 (222)
T PRK13189        163 QTSDEKGVATPA  174 (222)
T ss_pred             hhHhhcCcCcCC
Confidence            987766655444

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.97  E-value=2.8e-29  Score=216.44  Aligned_cols=178  Identities=29%  Similarity=0.429  Sum_probs=145.8

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      +|+.+|+|++++   .+| .++|++++| |++||+|++++|||+|..+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus         1 vG~~aP~F~~~~---~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~   76 (203)
T cd03016           1 LGDTAPNFEADT---THG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW   76 (203)
T ss_pred             CcCCCCCeEEec---CCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence            589999999984   355 589999999 789898888999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccCC--CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .+..++..+ .+++||+++|+++.++++||+.....  +...|++||||++|+|++++.++...+++.+++++.+++++.
T Consensus        77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~  155 (203)
T cd03016          77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL  155 (203)
T ss_pred             HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            987655433 37899999999999999999975432  345689999999999999998888889999999999999988


Q ss_pred             CCCCCcc----ccccceeccceechHHHHH
Q psy16151        224 PLRTGAI----NGLSLLVIGLFQVTEKTCD  249 (299)
Q Consensus       224 ~~~g~~v----n~ast~~~~~i~~s~~~~~  249 (299)
                      ....+.+    |.++..+.--..++.+.++
T Consensus       156 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~  185 (203)
T cd03016         156 TDKHKVATPANWKPGDDVIVPPSVSDEEAK  185 (203)
T ss_pred             HhhcCcCcCCCCCCCCceecCCCCCHHHHH
Confidence            7543322    2234444433444444443

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>KOG0852|consensus

Probab=99.96  E-value=1.1e-28  Score=199.49  Aligned_cols=170  Identities=69%  Similarity=1.121  Sum_probs=162.5

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      .+.+..++|+|.-..+.|+.-+.++|+||+||||+++|++..+..+|++|+-.+.+.+++|++.|.+||++|+|+.+.+.
T Consensus         3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl   82 (196)
T KOG0852|consen    3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL   82 (196)
T ss_pred             ccccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence            35567788999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +|...-++.+|.+.+.+|+++|.+.++++.|||+.+.+|.+.|..||||++|.+|.+..++.+.++.+++.++.+++.|.
T Consensus        83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~  162 (196)
T KOG0852|consen   83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQF  162 (196)
T ss_pred             hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccc
Q psy16151        224 PLRTGAINGL  233 (299)
Q Consensus       224 ~~~g~~vn~a  233 (299)
                      ....++|..|
T Consensus       163 td~~geVcPa  172 (196)
T KOG0852|consen  163 TDEHGEVCPA  172 (196)
T ss_pred             hhccCccccC
Confidence            9998888666

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.96  E-value=1.6e-27  Score=199.44  Aligned_cols=146  Identities=26%  Similarity=0.408  Sum_probs=126.8

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+++   +.+|+.++|++++||++||+||++.|||+|..+++.|+++++++.  |++|++||.|+++.
T Consensus        15 ~~~~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~   89 (167)
T PRK00522         15 GSLPQVGDKAPDFTLV---ANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFA   89 (167)
T ss_pred             CCCCCCCCCCCCeEEE---cCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence            4467899999999998   668999999999999999999977779999999999999999983  89999999999999


Q ss_pred             HHHHhhcccccCCCCccc-eeeeecC-chHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEec-cCCCCCCHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMN-DLPVGRSVDETL  215 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~-~~~~g~~~~evl  215 (299)
                      +++|.+.+       +++ +++++|. .+.+++.||+....   .|...|++||||++|+|++.+.. ......+.++++
T Consensus        90 ~~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l  162 (167)
T PRK00522         90 QKRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAAL  162 (167)
T ss_pred             HHHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHH
Confidence            99999886       665 7999995 56999999997554   46677899999999999999973 445667888888


Q ss_pred             HHHh
Q psy16151        216 RLVQ  219 (299)
Q Consensus       216 ~~l~  219 (299)
                      +.++
T Consensus       163 ~~l~  166 (167)
T PRK00522        163 AALK  166 (167)
T ss_pred             HHhh
Confidence            8775

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.95  E-value=1.4e-27  Score=195.46  Aligned_cols=145  Identities=36%  Similarity=0.580  Sum_probs=128.7

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      +.+|+.+|+|++.   +.+|+.+++++++| |++||+||+++|||.|+.+++.|++++++++++|+++++||.|+++.++
T Consensus         1 ~~~G~~~p~~~l~---~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~   77 (149)
T cd03018           1 LEVGDKAPDFELP---DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR   77 (149)
T ss_pred             CCCCCcCCCcEec---CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence            4689999999998   56899999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCc--hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +|.+++       +++||+++|.+  +++++.||+.....+.+.|++||||++|+|++.+.+......+..++.+.++
T Consensus        78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~  148 (149)
T cd03018          78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD  148 (149)
T ss_pred             HHHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence            999876       78999999987  9999999997654455567999999999999999877656667777776664

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.95  E-value=3e-27  Score=195.06  Aligned_cols=146  Identities=22%  Similarity=0.377  Sum_probs=126.4

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      ..+++|+.+|+|+++   +.+|+.++|++++||++||+||++.|||.|+.+++.|++++++++++|++||+||.|+++.+
T Consensus         2 ~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~   78 (154)
T PRK09437          2 NPLKAGDIAPKFSLP---DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKL   78 (154)
T ss_pred             CcCCCCCcCCCcEee---CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            468889999999998   56899999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--C----CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR  216 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g----~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~  216 (299)
                      .+|.++.       +++||+++|+++.++++||+.....  +    ...|++||||++|+|++++.+ .....+.+++++
T Consensus        79 ~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~  150 (154)
T PRK09437         79 SRFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLD  150 (154)
T ss_pred             HHHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHH
Confidence            9999876       7899999999999999999875431  1    123789999999999999844 344556777777


Q ss_pred             HHh
Q psy16151        217 LVQ  219 (299)
Q Consensus       217 ~l~  219 (299)
                      .++
T Consensus       151 ~~~  153 (154)
T PRK09437        151 YLK  153 (154)
T ss_pred             HHh
Confidence            664

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.95  E-value=3.9e-27  Score=191.84  Aligned_cols=139  Identities=29%  Similarity=0.461  Sum_probs=120.9

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      ++|+.+|+|+++   +.+|+.++|++++||++||+||++.|||+|+.+++.|++++++++  |+.||+||+|+.+.+.+|
T Consensus         1 ~~G~~aP~f~l~---~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~   75 (143)
T cd03014           1 KVGDKAPDFTLV---TSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRW   75 (143)
T ss_pred             CCCCCCCCcEEE---CCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHH
Confidence            369999999998   668999999999999999999988889999999999999999984  899999999999999999


Q ss_pred             hhcccccCCCCcc-ceeeeecCc-hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHHH
Q psy16151        146 VNTPRKEGGLGKL-KIPLLSDLT-HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETLR  216 (299)
Q Consensus       146 ~~~~~~~~~~~~~-~~p~l~D~~-~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~  216 (299)
                      .+++       +. .|++++|.. ++++++||++.+..|...|++||||++|+|++.+.+. ....++++++++
T Consensus        76 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~  142 (143)
T cd03014          76 CGAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA  142 (143)
T ss_pred             HHhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence            9876       43 799999996 9999999998665566689999999999999999743 344556666653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.95  E-value=5.7e-27  Score=185.71  Aligned_cols=124  Identities=27%  Similarity=0.454  Sum_probs=114.7

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  146 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~  146 (299)
                      +|+++|+|+++   +.+|+.++|++++||++||+||+++|||.|..+++.|++++++++++|+.+++|+.|+.+.+++|.
T Consensus         1 vG~~~P~f~l~---~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~   77 (124)
T PF00578_consen    1 VGDKAPDFTLT---DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL   77 (124)
T ss_dssp             TTSBGGCEEEE---TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred             CcCCCCCcEeE---CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence            69999999998   668999999999999999999977799999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        147 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       147 ~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      +..       +++||++.|+++++++.|++.........|++||||++|+|+++
T Consensus        78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            987       79999999999999999999755433467999999999999984

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.94  E-value=5.9e-26  Score=187.62  Aligned_cols=133  Identities=26%  Similarity=0.393  Sum_probs=117.2

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCc-EEEEEeCCCHHhHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL  143 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv-~vi~Vs~d~~~~~~  143 (299)
                      +|+.+|+|+|++..+.+|+.++|++ ++||++||+|||+.|||.|..| ++.|++.+++|++.|+ .|++||.|+++.++
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence            5999999999854323589999999 6999999999999999999999 9999999999999999 59999999999999


Q ss_pred             HHhhcccccCCCCcc--ceeeeecCchHHHHHhCCcccCC--CC---ceeEEEEEeCCCcEEEEEeccCCC
Q psy16151        144 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ--GH---TLRGLFIIDRNGVLRQITMNDLPV  207 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~~gv~~~~~--g~---~~p~~~lID~dG~I~~~~~~~~~~  207 (299)
                      +|.+..       ++  +||+++|++++++++||+.....  |.   ..|++|||| +|+|++++....+.
T Consensus        81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~  143 (155)
T cd03013          81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPG  143 (155)
T ss_pred             HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCC
Confidence            999986       55  89999999999999999976543  32   579999999 79999999765543

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.94  E-value=4.6e-26  Score=186.08  Aligned_cols=133  Identities=24%  Similarity=0.369  Sum_probs=113.9

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      ++|+.+|+|++++. +.+|++++|++++||++||+||.+.|||+|..++|.|.+++++++++|+.+++|+.++.....+|
T Consensus         1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (146)
T PF08534_consen    1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF   79 (146)
T ss_dssp             STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred             CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence            58999999999743 57999999999999999999995549999999999999999999999999999999886668888


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccCC
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDLP  206 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~~  206 (299)
                      .++.       +.+||++.|++..++++|++....   .|...|++||||++|+|++++.+...
T Consensus        80 ~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   80 LKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            8875       889999999999999999975221   12357999999999999999976554

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.94  E-value=4.5e-26  Score=184.55  Aligned_cols=136  Identities=32%  Similarity=0.431  Sum_probs=119.9

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      +++|+|+++   +.+|+.+++++++||++||+||+++|||.|+.+++.|++++++++++|++|++|++|+++...+|.++
T Consensus         1 ~~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~   77 (140)
T cd03017           1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK   77 (140)
T ss_pred             CCCCCcccc---CCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            478999998   66899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccCCCCccceeeeecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      +       +++||+++|+++.+++.||+....   .+...|++||||++|+|++++.+. ..++++++++
T Consensus        78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~-~~~~~~~~~~  139 (140)
T cd03017          78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKV-KPKGHAEEVL  139 (140)
T ss_pred             h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecC-CccchHHHHh
Confidence            6       789999999999999999997542   123458999999999999998544 4676777665

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>KOG0854|consensus

Probab=99.93  E-value=3.5e-25  Score=179.16  Aligned_cols=191  Identities=24%  Similarity=0.398  Sum_probs=166.1

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ..+..|+.+|+|+..+.    -..+.+.||.|. |.||+..++.++|+|.+|+..++++..+|.++|++.|++|+|+.++
T Consensus         4 ~~l~lgd~~PNfea~Tt----~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves   79 (224)
T KOG0854|consen    4 PRLRLGDTVPNFEADTT----VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES   79 (224)
T ss_pred             CcccccCcCCCcccccc----ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence            35778999999998633    346999999886 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCC--ccceeeeecCchHHHHHhCCcccCC------CCceeEEEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151        142 HLAWVNTPRKEGGLG--KLKIPLLSDLTHKISLDYGVYLSDQ------GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDE  213 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~--~~~~p~l~D~~~~~~~~~gv~~~~~------g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~e  213 (299)
                      ++.|.+.++.+....  .++||++.|++.+++-.|++....+      |...|+.||||||-+|+..+.++..+|++.++
T Consensus        80 H~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dE  159 (224)
T KOG0854|consen   80 HKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDE  159 (224)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHH
Confidence            999999985543322  4899999999999999999986642      45679999999999999999999999999999


Q ss_pred             HHHHHhhccCCCC---CCcc-ccccceeccceechHHHHHHHhhcCce
Q psy16151        214 TLRLVQAFHDPLR---TGAI-NGLSLLVIGLFQVTEKTCDILEDHGVT  257 (299)
Q Consensus       214 vl~~l~~L~~~~~---g~~v-n~ast~~~~~i~~s~~~~~~L~~~~~~  257 (299)
                      +++.++.||....   ..++ |.+.+.++...-|+++-++.|+..||.
T Consensus       160 iLRvidsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp~gf~  207 (224)
T KOG0854|consen  160 ILRVIDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFPKGFN  207 (224)
T ss_pred             HHHHHHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcccccc
Confidence            9999999998876   2333 444888888888999999999998864

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.92  E-value=2.4e-24  Score=174.24  Aligned_cols=128  Identities=43%  Similarity=0.713  Sum_probs=114.2

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  149 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~  149 (299)
                      .+|+|++.   |.+|+++++++++||++||+||+++||+.|..+++.|++++++|++.++.+++|+.|+++...+|.++.
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971           1 KAPDFTLP---ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCCceec---cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            47999998   568999999999999999999999999999999999999999998889999999999999899999875


Q ss_pred             cccCCCCccceeeeecCchHHHHHhCCcccCC---CCceeEEEEEeCCCcEEEEEeccCC
Q psy16151        150 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLRGLFIIDRNGVLRQITMNDLP  206 (299)
Q Consensus       150 ~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~---g~~~p~~~lID~dG~I~~~~~~~~~  206 (299)
                      .      ..+|++++|+++.+++.||+.....   +...|++||||++|+|++++.+...
T Consensus        78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            1      5789999999999999999986542   3456899999999999999976554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.91  E-value=1.2e-23  Score=176.56  Aligned_cols=154  Identities=20%  Similarity=0.160  Sum_probs=126.5

Q ss_pred             CCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--------
Q psy16151         68 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------  138 (299)
Q Consensus        68 G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--------  138 (299)
                      |+.+|+|+++   +.+|+.++|+++ +||++||+|| ++|||.|..+++.|.+++++|+++++.+++|+.|+        
T Consensus         1 g~~~p~f~l~---~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~   76 (171)
T cd02969           1 GSPAPDFSLP---DTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS   76 (171)
T ss_pred             CCcCCCcccc---CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence            6889999998   668899999999 8999999999 89999999999999999999998899999999875        


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC-----CCCCHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP-----VGRSVDE  213 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~-----~g~~~~e  213 (299)
                      ++..++|.+.+       +++||++.|+++.+++.||+.      ..|++||||++|+|++....+..     ......+
T Consensus        77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  143 (171)
T cd02969          77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD  143 (171)
T ss_pred             HHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence            45566666654       788999999999999999996      45899999999999988643221     2235677


Q ss_pred             HHHHHhhccCCCCCCccccccceec
Q psy16151        214 TLRLVQAFHDPLRTGAINGLSLLVI  238 (299)
Q Consensus       214 vl~~l~~L~~~~~g~~vn~ast~~~  238 (299)
                      +.+.|+++........-++++-||.
T Consensus       144 ~~~~i~~~l~~~~~~~~~~~~~~~~  168 (171)
T cd02969         144 LRAALDALLAGKPVPVPQTPSIGCS  168 (171)
T ss_pred             HHHHHHHHHcCCCCCccccCCCCcc
Confidence            8888887766555555566666654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.91  E-value=1.1e-23  Score=172.00  Aligned_cols=123  Identities=24%  Similarity=0.277  Sum_probs=108.4

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccC-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      .+|+|+++   +.+|+.++++++. +|++||+||+++|||+|+.+++.|++++++++++|+.||+|+.|+.+...+|.+.
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~   77 (149)
T cd02970           1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG   77 (149)
T ss_pred             CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence            47999998   5689999999986 5789999988999999999999999999999999999999999998887778876


Q ss_pred             ccccCCCCccceeeeecCchHHHHHhCCcccC-----------------------CCCceeEEEEEeCCCcEEEEEe
Q psy16151        149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD-----------------------QGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~-----------------------~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      .       +++||+++|+++.++++||+....                       .+...|++||||++|+|++.+.
T Consensus        78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~  147 (149)
T cd02970          78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV  147 (149)
T ss_pred             c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence            5       789999999999999999996322                       1246799999999999999984

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.89  E-value=2.8e-23  Score=171.09  Aligned_cols=122  Identities=15%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhH
Q psy16151         71 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH  142 (299)
Q Consensus        71 aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~  142 (299)
                      +|+|+++   |.+|++++|++++||+|||+|| ++||| |+.++|.|++++++|+++|+.|++|++|        +.+.+
T Consensus         2 ~~~f~l~---d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~   76 (152)
T cd00340           2 IYDFSVK---DIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI   76 (152)
T ss_pred             cceeEEE---CCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence            6899998   6699999999999999999999 99999 9999999999999999999999999874        36778


Q ss_pred             HHHhhc-ccccCCCCccceeeeecC--chH-HHHHhCCcccCC-C------CceeEEEEEeCCCcEEEEEecc
Q psy16151        143 LAWVNT-PRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLSDQ-G------HTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       143 ~~~~~~-~~~~~~~~~~~~p~l~D~--~~~-~~~~~gv~~~~~-g------~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      ++|+++ .       +++||++.|.  ++. .++.|++..... +      ...|++||||++|+|++++.+.
T Consensus        77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~  142 (152)
T cd00340          77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT  142 (152)
T ss_pred             HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence            899875 4       7899999874  333 455565321100 0      0124899999999999998554

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.89  E-value=9.2e-23  Score=178.41  Aligned_cols=143  Identities=16%  Similarity=0.155  Sum_probs=111.5

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      ....|+.+|+|+++   |.+|+.++|++++||++||+|| ++|||+|..++|.|++++++|+++|++||+|+.|      
T Consensus        72 ~~~~g~~aPdF~l~---d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e  147 (236)
T PLN02399         72 RAATEKSVHDFTVK---DIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  147 (236)
T ss_pred             chhcCCCCCceEEE---CCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence            34579999999998   6689999999999999999999 9999999999999999999999999999999964      


Q ss_pred             --CHHhHHHHh-hcccccCCCCccceeeeec--Cch-HHHHHhCCcccCC----C---CceeEEEEEeCCCcEEEEEecc
Q psy16151        138 --SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQ----G---HTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       138 --~~~~~~~~~-~~~~~~~~~~~~~~p~l~D--~~~-~~~~~~gv~~~~~----g---~~~p~~~lID~dG~I~~~~~~~  204 (299)
                        +.++..+|+ +++       +++||++.|  .++ .++..|++.....    |   ...|++||||++|+|++++.+.
T Consensus       148 ~~s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~  220 (236)
T PLN02399        148 PGSNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT  220 (236)
T ss_pred             CCCHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence              456677776 444       789999854  434 4555555321100    1   1248999999999999998543


Q ss_pred             CCCCCCHHHHHHHHhhc
Q psy16151        205 LPVGRSVDETLRLVQAF  221 (299)
Q Consensus       205 ~~~g~~~~evl~~l~~L  221 (299)
                      .    +.+++.+.|+.+
T Consensus       221 ~----~~~~le~~I~~l  233 (236)
T PLN02399        221 T----SPFQIEKDIQKL  233 (236)
T ss_pred             C----CHHHHHHHHHHH
Confidence            3    445666666655

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.89  E-value=7.6e-23  Score=175.71  Aligned_cols=142  Identities=11%  Similarity=0.039  Sum_probs=108.1

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------  136 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--------  136 (299)
                      -..|..+|+|+++   |.+|+.++|++++||+|||+|| ++|||+|..++|.|++++++|+++|++||+|+.        
T Consensus        13 ~~~~~~~pdf~l~---d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~   88 (199)
T PTZ00056         13 DELRKSIYDYTVK---TLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEF   88 (199)
T ss_pred             hhcCCCCCceEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCC
Confidence            4457899999998   6689999999999999999999 899999999999999999999999999999996        


Q ss_pred             CCHHhHHHHhhcccccCCCCccceeeeecC------chHHHH--------HhCCcccCCCC-ceeEEEEEeCCCcEEEEE
Q psy16151        137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISL--------DYGVYLSDQGH-TLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~------~~~~~~--------~~gv~~~~~g~-~~p~~~lID~dG~I~~~~  201 (299)
                      |+++++++|++++       +++||++.|.      ...+.+        .|+......+. ..+++||||++|+|++++
T Consensus        89 d~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~  161 (199)
T PTZ00056         89 PNTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF  161 (199)
T ss_pred             CCHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence            4677888998876       8899999763      123332        23322111111 124799999999999887


Q ss_pred             eccCCCCCCHHHHHHHHhhc
Q psy16151        202 MNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       202 ~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+..    +.+++.+.|+.+
T Consensus       162 ~g~~----~~~~l~~~I~~l  177 (199)
T PTZ00056        162 SPRT----EPLELEKKIAEL  177 (199)
T ss_pred             CCCC----CHHHHHHHHHHH
Confidence            4322    344555555544

>PLN02412 probable glutathione peroxidase

Probab=99.89  E-value=1e-22  Score=170.40  Aligned_cols=138  Identities=15%  Similarity=0.138  Sum_probs=106.6

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHH
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  140 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~  140 (299)
                      +.+|+|+++   |.+|+.++|++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+.|        +.+
T Consensus         7 ~~~pdf~l~---d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~   82 (167)
T PLN02412          7 KSIYDFTVK---DIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE   82 (167)
T ss_pred             CCCCceEEE---CCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence            679999998   6699999999999999999999 9999999999999999999999999999999975        333


Q ss_pred             hHHH-HhhcccccCCCCccceeeeec--Cc-hHHHHHhCCcccCC----C---CceeEEEEEeCCCcEEEEEeccCCCCC
Q psy16151        141 THLA-WVNTPRKEGGLGKLKIPLLSD--LT-HKISLDYGVYLSDQ----G---HTLRGLFIIDRNGVLRQITMNDLPVGR  209 (299)
Q Consensus       141 ~~~~-~~~~~~~~~~~~~~~~p~l~D--~~-~~~~~~~gv~~~~~----g---~~~p~~~lID~dG~I~~~~~~~~~~g~  209 (299)
                      ...+ |.+.+       +++||++.|  .+ ...++.|++.....    +   ...|++||||++|+|++++.+..    
T Consensus        83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~----  151 (167)
T PLN02412         83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT----  151 (167)
T ss_pred             HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC----
Confidence            4333 34554       889999974  55 36666666432211    1   12589999999999999985443    


Q ss_pred             CHHHHHHHHhhc
Q psy16151        210 SVDETLRLVQAF  221 (299)
Q Consensus       210 ~~~evl~~l~~L  221 (299)
                      +.+++.+.++.+
T Consensus       152 ~~~~l~~~i~~~  163 (167)
T PLN02412        152 SPLKIEKDIQNL  163 (167)
T ss_pred             CHHHHHHHHHHH
Confidence            344555555544

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.89  E-value=1.1e-22  Score=162.24  Aligned_cols=107  Identities=17%  Similarity=0.228  Sum_probs=96.6

Q ss_pred             CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC------CCHHhHHHHhhcccccCCCC
Q psy16151         83 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLG  156 (299)
Q Consensus        83 ~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~------d~~~~~~~~~~~~~~~~~~~  156 (299)
                      .|++++|++++||++||+|| ++|||+|..++|.|++++++++++++.|++|+.      ++.+..++|.+++       
T Consensus        12 ~~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~-------   83 (126)
T cd03012          12 TDKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY-------   83 (126)
T ss_pred             CCCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-------
Confidence            35789999999999999999 999999999999999999999999999999986      3467778888776       


Q ss_pred             ccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        157 KLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       157 ~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +++||++.|+++.+++.|++.      ..|++||||++|+|++++.+
T Consensus        84 ~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012          84 GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEec
Confidence            889999999999999999985      46899999999999999854

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.88  E-value=1.2e-22  Score=172.48  Aligned_cols=139  Identities=12%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             CCCCCCcEEeeeeCCCCceEEcCccCCCeEE-EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------C
Q psy16151         68 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------S  138 (299)
Q Consensus        68 G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vl-L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~  138 (299)
                      +..+|+|+++   +.+|+.++|++|+||++| +++| ++|||+|..++|.|++++++|+++|+.||+||+|        +
T Consensus        17 ~~~~p~f~l~---d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~   92 (183)
T PTZ00256         17 TKSFFEFEAI---DIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD   92 (183)
T ss_pred             CCcccceEeE---cCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence            6789999998   669999999999999765 4556 9999999999999999999999999999999975        2


Q ss_pred             HHhHHHHhh-cccccCCCCccceeeeec--CchHH-HHHhCCcccCC--------C-Ccee---EEEEEeCCCcEEEEEe
Q psy16151        139 HFTHLAWVN-TPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSDQ--------G-HTLR---GLFIIDRNGVLRQITM  202 (299)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~p~l~D--~~~~~-~~~~gv~~~~~--------g-~~~p---~~~lID~dG~I~~~~~  202 (299)
                      .+...+|.+ .+       +++||++.|  .++.. ++.|++.....        + ...|   ++||||++|+|++++.
T Consensus        93 ~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~  165 (183)
T PTZ00256         93 EPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS  165 (183)
T ss_pred             HHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence            355666654 43       789999965  44332 33442111100        0 1235   5799999999999986


Q ss_pred             ccCCCCCCHHHHHHHHhhc
Q psy16151        203 NDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       203 ~~~~~g~~~~evl~~l~~L  221 (299)
                      +..    +..++.+.|..+
T Consensus       166 g~~----~~~~l~~~I~~l  180 (183)
T PTZ00256        166 PKV----NPNEMIQDIEKL  180 (183)
T ss_pred             CCC----CHHHHHHHHHHH
Confidence            433    334455555443

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.88  E-value=3.5e-22  Score=164.71  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------CCHHhHH
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHL  143 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--------d~~~~~~  143 (299)
                      =+|+++   |.+|++++|++|+||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+.        |+.+.+.
T Consensus         3 ~~f~l~---~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~   78 (153)
T TIGR02540         3 YSFEVK---DARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE   78 (153)
T ss_pred             ccceeE---CCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence            368877   6799999999999999999999 999999999999999999999999999999985        6678889


Q ss_pred             HHhhc-ccccCCCCccceeeeecC-----chHHHHHhCCcccCCCCceeE----EEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151        144 AWVNT-PRKEGGLGKLKIPLLSDL-----THKISLDYGVYLSDQGHTLRG----LFIIDRNGVLRQITMNDLPVGRSVDE  213 (299)
Q Consensus       144 ~~~~~-~~~~~~~~~~~~p~l~D~-----~~~~~~~~gv~~~~~g~~~p~----~~lID~dG~I~~~~~~~~~~g~~~~e  213 (299)
                      +|+++ +       +++||++.|.     +...+..|.+...  + ..|+    +||||++|+|++++.+..    +.++
T Consensus        79 ~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~--~-~~p~~~~~tflID~~G~v~~~~~g~~----~~~~  144 (153)
T TIGR02540        79 SFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS--K-KEPRWNFWKYLVNPEGQVVKFWRPEE----PVEE  144 (153)
T ss_pred             HHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC--C-CCCCCccEEEEEcCCCcEEEEECCCC----CHHH
Confidence            99974 5       7899999872     2222333433211  1 2355    999999999999985443    4556


Q ss_pred             HHHHHhhc
Q psy16151        214 TLRLVQAF  221 (299)
Q Consensus       214 vl~~l~~L  221 (299)
                      +.+.|+.+
T Consensus       145 l~~~i~~l  152 (153)
T TIGR02540       145 IRPEITAL  152 (153)
T ss_pred             HHHHHHHh
Confidence            66666543

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.88  E-value=1.8e-22  Score=171.73  Aligned_cols=122  Identities=23%  Similarity=0.345  Sum_probs=103.3

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CHHhH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH  142 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~~~~  142 (299)
                      ..+|+++|+|+++++ +.+|+.++++++ +||++||+|| ++|||+|+.++|.|.+++    ++|++|++|+.| +.+..
T Consensus        39 ~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~  112 (185)
T PRK15412         39 ALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA  112 (185)
T ss_pred             hhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence            567999999999855 334678888776 8999999999 999999999999998774    358999999975 46778


Q ss_pred             HHHhhcccccCCCCccceee-eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC
Q psy16151        143 LAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~-l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~  205 (299)
                      .+|.++.       +.+||+ +.|+++.+++.||+.      ..|++||||++|+|++++.+..
T Consensus       113 ~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~  163 (185)
T PRK15412        113 ISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL  163 (185)
T ss_pred             HHHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCC
Confidence            8899876       788884 789999999999986      4689999999999999986554

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.87  E-value=3e-21  Score=161.82  Aligned_cols=138  Identities=24%  Similarity=0.362  Sum_probs=118.3

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~  141 (299)
                      ..+.+|+.+|+|++.   +.+|+.+++++++||+++|+|| ++||+.|+.+++.|.++++++++.++.+++|+.|+ .+.
T Consensus        33 ~~~~~g~~~p~~~~~---~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~  108 (173)
T PRK03147         33 EKVQVGKEAPNFVLT---DLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELA  108 (173)
T ss_pred             cccCCCCCCCCcEee---cCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHH
Confidence            468889999999988   5689999999999999999999 99999999999999999999998899999999975 456


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|.+.+       +.+||++.|.++.+.+.||+.      ..|++|+||++|+|+..+.+..    ..+++.+.++.+
T Consensus       109 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l~~~  171 (173)
T PRK03147        109 VKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEM----TEEQLEEYLEKI  171 (173)
T ss_pred             HHHHHHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHh
Confidence            67788765       789999999999999999996      4689999999999998874433    345555555544

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.87  E-value=1.7e-21  Score=166.23  Aligned_cols=132  Identities=15%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcC--ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Ls--d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      .+.+|+.+|+|+++   |.+|+.++++  +++||++||+|| ++|||+|+.++|.+.+++++   .++.+++|+.|++++
T Consensus        45 ~~~vG~~aP~f~l~---d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~  117 (189)
T TIGR02661        45 GPDVGDAAPIFNLP---DFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE  117 (189)
T ss_pred             CCCCCCcCCCcEec---CCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence            47899999999998   6689999995  579999999999 99999999999999998754   478899999998999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      ..+|++++       +++++.+. .++++++.|++.      ..|++||||++|+|++..  ......+++++++.+
T Consensus       118 ~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l  178 (189)
T TIGR02661       118 HRRFLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEAD  178 (189)
T ss_pred             HHHHHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHH
Confidence            99999886       66665543 467899999985      468999999999999863  223333455555544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.86  E-value=7e-21  Score=154.40  Aligned_cols=121  Identities=21%  Similarity=0.291  Sum_probs=102.7

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhhcC---cEEEEEeCCC----HHh
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT  141 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~~g---v~vi~Vs~d~----~~~  141 (299)
                      .+|+|++.   +.+|+++++++++||++||+|| ++||+. |..+++.|+++++++++++   +++++||.|+    ++.
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~   76 (142)
T cd02968           1 IGPDFTLT---DQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV   76 (142)
T ss_pred             CCCceEEE---cCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence            47999998   6689999999999999999999 789997 9999999999999999865   9999999864    466


Q ss_pred             HHHHhhcccccCCCCccceeeeecCc---hHHHHHhCCcccCCC--------CceeEEEEEeCCCcEEEEE
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG--------HTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~~gv~~~~~g--------~~~p~~~lID~dG~I~~~~  201 (299)
                      +++|.+.+       +.+|+++.|++   ..++++||+......        ...|.+||||++|+|++++
T Consensus        77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~  140 (142)
T cd02968          77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY  140 (142)
T ss_pred             HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence            77777775       67899999975   789999998754321        1247899999999999886

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.85  E-value=4.9e-21  Score=152.72  Aligned_cols=118  Identities=22%  Similarity=0.341  Sum_probs=99.3

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-CCHHhHHHHhh
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWVN  147 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-d~~~~~~~~~~  147 (299)
                      +++|+|+++++ +++++.+++++++||++||+|| ++|||+|..++|.|.++.+++   +++|++|+. ++.+..++|.+
T Consensus         1 ~~~p~f~~~~~-~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~   75 (127)
T cd03010           1 KPAPAFSLPAL-PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA   75 (127)
T ss_pred             CCCCCcccccc-cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence            36899999854 2223889999999999999999 999999999999999987764   599999997 45777788887


Q ss_pred             cccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        148 TPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       148 ~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      ..       +.+|+ ++.|.++.+++.|++.      ..|++|+||++|+|++++.+.
T Consensus        76 ~~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~  120 (127)
T cd03010          76 RH-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGP  120 (127)
T ss_pred             hc-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEecc
Confidence            75       66775 6689999999999996      469999999999999998554

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.85  E-value=1.2e-20  Score=147.37  Aligned_cols=110  Identities=18%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             CCcEEeeeeCCCCceEEcCccC-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhccc
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR  150 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~  150 (299)
                      |+|+++   +.+|+.++|++++ ||++||+|| ++||++|+.++|.+.++++++.+ ++.+++++.++.+...+|.+++ 
T Consensus         1 p~f~l~---~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~-   74 (114)
T cd02967           1 PTFDLT---TIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH-   74 (114)
T ss_pred             CCceee---cCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence            789987   5689999999998 999999999 99999999999999999888754 6888988877788888888876 


Q ss_pred             ccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        151 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       151 ~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                            ++ .||++.+  .++++.|++.      ..|++||||++|+|++..
T Consensus        75 ------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          75 ------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             ------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence                  55 4888874  5688999985      469999999999999875

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.85  E-value=7.9e-21  Score=159.85  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=104.5

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCc--eEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-H
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H  139 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~--~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~  139 (299)
                      ...+|+++|+|++++   .+|+  .++++++ +||+++|+|| ++|||+|+.++|.+.++++    +|++|++|+.++ .
T Consensus        33 ~~~vG~~ap~f~l~~---~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~  104 (173)
T TIGR00385        33 SALIGKPVPAFPLAA---LREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS  104 (173)
T ss_pred             chhcCCCCCCccccc---cCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence            356799999999984   4555  6666776 7999999999 9999999999999887753    589999999864 5


Q ss_pred             HhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      ++..+|.+++       +++|| ++.|+++++++.|++.      ..|++|+||++|+|++++.+..    +.+++.+.+
T Consensus       105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l  167 (173)
T TIGR00385       105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPL----NNEVWTEGF  167 (173)
T ss_pred             HHHHHHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccC----CHHHHHHHH
Confidence            5566788765       77887 5689999999999986      4689999999999999985433    344555544


Q ss_pred             hh
Q psy16151        219 QA  220 (299)
Q Consensus       219 ~~  220 (299)
                      ++
T Consensus       168 ~~  169 (173)
T TIGR00385       168 LP  169 (173)
T ss_pred             HH
Confidence            43

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>KOG0855|consensus

Probab=99.85  E-value=1.1e-20  Score=151.96  Aligned_cols=147  Identities=29%  Similarity=0.389  Sum_probs=130.6

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ..+.+|+.+|||+|+   |+||+.++|.++.|+ +||++||++.-+|.|..+...+++-|++|++.+.+|+|+|.|+...
T Consensus        61 ~~v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~s  137 (211)
T KOG0855|consen   61 LKVNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSAS  137 (211)
T ss_pred             eeeecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHH
Confidence            368899999999998   889999999999986 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +++|....       +++|.+|+|+.+++.+.+|+..+.. |.+.|..||+|+.|....+......+..++++.++.+.
T Consensus       138 qKaF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~  209 (211)
T KOG0855|consen  138 QKAFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLK  209 (211)
T ss_pred             HHHhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHh
Confidence            99999876       8999999999999999999988654 45789999999888777666566666667777776654

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.83  E-value=3.4e-20  Score=150.82  Aligned_cols=103  Identities=13%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-------CcEEEEEeCCC-HHhHHHHhhcccccCCCC
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG  156 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-------gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~  156 (299)
                      ..++|++|+||+|+|+|| |+|||+|+.++|.|.+++++++++       +++||+||.|. .+...+|.++.       
T Consensus        16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~-------   87 (146)
T cd03008          16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM-------   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence            357899999999999999 999999999999999999988754       69999999985 44466777765       


Q ss_pred             ccce---eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        157 KLKI---PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       157 ~~~~---p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      ++.|   |+..+....+++.|++.      ..|++||||++|+|+...
T Consensus        88 ~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~  129 (146)
T cd03008          88 PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN  129 (146)
T ss_pred             CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence            5555   33333346899999986      579999999999999774

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.81  E-value=5.5e-19  Score=169.84  Aligned_cols=132  Identities=14%  Similarity=0.250  Sum_probs=109.5

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------C
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------S  138 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------~  138 (299)
                      +..++++|+|++.   |.+|+.++++  +||+|||+|| ++||++|+.++|.|.+++++++..++.||+|+.+      +
T Consensus        32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~  105 (521)
T PRK14018         32 ATVPHTLSTLKTA---DNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK  105 (521)
T ss_pred             ccccCCCCCeEee---cCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence            6678899999987   7799999998  9999999999 9999999999999999999998889999999863      2


Q ss_pred             HHhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      .++..+|.+..       ++ .||++.|.++++++.|++.      ..|++||||++|+|+....+..    ..+++.+.
T Consensus       106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a~  168 (521)
T PRK14018        106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALAL  168 (521)
T ss_pred             HHHHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHHH
Confidence            34455666543       33 6899999999999999996      5799999999999999986543    34455554


Q ss_pred             Hh
Q psy16151        218 VQ  219 (299)
Q Consensus       218 l~  219 (299)
                      ++
T Consensus       169 Ie  170 (521)
T PRK14018        169 IR  170 (521)
T ss_pred             HH
Confidence            44

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.80  E-value=2e-19  Score=151.27  Aligned_cols=147  Identities=13%  Similarity=0.126  Sum_probs=109.9

Q ss_pred             ccccccCCCCCCCCcEEeee-------eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE-
Q psy16151         60 YFICFKLVSKPAPFWQGTAV-------VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV-  131 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~-------~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v-  131 (299)
                      +..+.+.+|+++|..++.+-       .+-+.++++.++++||+.||+|| |+||++|+.+.|.|.++    +++|+.+ 
T Consensus        18 ~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~   92 (184)
T TIGR01626        18 AWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPV   92 (184)
T ss_pred             HhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcc
Confidence            34567899999999876521       01234678889999999999999 99999999999999988    5668999 


Q ss_pred             -----EEEeCCC-HHhHHHHhhcccccCCCCcccee---eeecCchHHHHHhCCcccCCCCceeEE-EEEeCCCcEEEEE
Q psy16151        132 -----VAASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGHTLRGL-FIIDRNGVLRQIT  201 (299)
Q Consensus       132 -----i~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p---~l~D~~~~~~~~~gv~~~~~g~~~p~~-~lID~dG~I~~~~  201 (299)
                           ++|+.|+ ......|.+.+.+..   ...||   ++.|+++.++..||+.      ..|++ ||||++|+|++++
T Consensus        93 ~y~~t~~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~  163 (184)
T TIGR01626        93 KYQTTTIINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVK  163 (184)
T ss_pred             cccceEEEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEE
Confidence                 9999986 334445555432222   45666   9999999999999996      45676 9999999999999


Q ss_pred             eccCCCCCCHHHHHHHHhhc
Q psy16151        202 MNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       202 ~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+... ....++++..++.+
T Consensus       164 ~G~l~-~ee~e~~~~li~~l  182 (184)
T TIGR01626       164 EGALS-DSDIQTVISLVNGL  182 (184)
T ss_pred             eCCCC-HHHHHHHHHHHHHH
Confidence            66542 22345566666554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.79  E-value=1.2e-18  Score=134.33  Aligned_cols=112  Identities=27%  Similarity=0.397  Sum_probs=100.8

Q ss_pred             CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--HHhHHHHhhccc
Q psy16151         73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPR  150 (299)
Q Consensus        73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~~~  150 (299)
                      +|++.   +.+|+.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+  ++..++|.+.+ 
T Consensus         1 ~~~~~---~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~-   75 (116)
T cd02966           1 DFSLP---DLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY-   75 (116)
T ss_pred             Ccccc---CCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence            35655   5688999999999999999999 88999999999999999999987789999999998  78888888776 


Q ss_pred             ccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        151 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       151 ~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                            +.+|+++.|....+.+.|++.      ..|+++|+|++|+|++.+
T Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~  114 (116)
T cd02966          76 ------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARH  114 (116)
T ss_pred             ------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEe
Confidence                  689999999989999999986      468999999999999876

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.79  E-value=5.5e-19  Score=184.23  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEc-CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC---C
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---D  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~L-sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~---d  137 (299)
                      ......|.++|+|..+.. +.+|+++++ ++++||+|||+|| ++||++|+.++|.|++++++|+++++.||+|+.   |
T Consensus       388 ~~~~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D  465 (1057)
T PLN02919        388 LESKKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD  465 (1057)
T ss_pred             hhccccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc
Confidence            345667999999998742 357899998 6899999999999 999999999999999999999998999999974   3


Q ss_pred             CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      ..++..+|.+...++    ++.||++.|.+..+++.|++.      ..|++||||++|+|+++..+
T Consensus       466 ~~~~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G  521 (1057)
T PLN02919        466 NEKDLEAIRNAVLRY----NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSG  521 (1057)
T ss_pred             ccccHHHHHHHHHHh----CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEec
Confidence            323333343333333    889999999999999999986      57999999999999998744

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.77  E-value=1.1e-18  Score=139.82  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCcc
Q psy16151         81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKL  158 (299)
Q Consensus        81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~  158 (299)
                      +.+|+.++|++++||++||+|| ++||++|+.++|.|++++++++++  +++|++|+.|...  .+|.+.+.+. +...+
T Consensus         5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~-~~~~~   80 (131)
T cd03009           5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKM-PWLAV   80 (131)
T ss_pred             ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcC-CeeEc
Confidence            6799999999999999999999 899999999999999999999865  7999999998643  2333333221 10123


Q ss_pred             ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        159 KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       159 ~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +|+. .|....+++.||+.      ..|+++|||++|+|+...
T Consensus        81 ~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  116 (131)
T cd03009          81 PFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD  116 (131)
T ss_pred             ccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence            3332 34557899999996      469999999999999775

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.77  E-value=6.8e-18  Score=142.67  Aligned_cols=139  Identities=12%  Similarity=0.067  Sum_probs=100.3

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------CCHH
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF  140 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--------d~~~  140 (299)
                      +.+++|++.   +.+|+.++|++|+||+|||+|| ++||+.|. +++.|++++++|+++|++|++|+.        ++.+
T Consensus         3 ~~~~~f~~~---~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~   77 (183)
T PRK10606          3 DSILTTVVT---TIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE   77 (183)
T ss_pred             CCccCcEeE---CCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence            357899987   6689999999999999999999 99999885 899999999999999999999987        4667


Q ss_pred             hHHHHhh-cccccCCCCccceeeeec--Cch----HHHHHhCCcccC------CC---------------Cce---eEEE
Q psy16151        141 THLAWVN-TPRKEGGLGKLKIPLLSD--LTH----KISLDYGVYLSD------QG---------------HTL---RGLF  189 (299)
Q Consensus       141 ~~~~~~~-~~~~~~~~~~~~~p~l~D--~~~----~~~~~~gv~~~~------~g---------------~~~---p~~~  189 (299)
                      ++.+|++ .+       +++||++.+  .++    .+.+-+.-....      .+               ...   =+.|
T Consensus        78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF  150 (183)
T PRK10606         78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF  150 (183)
T ss_pred             HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence            7888886 44       889999944  332    233333110000      00               000   1389


Q ss_pred             EEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        190 IIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       190 lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |||++|+++.++..  ...+....+.+.|+.+
T Consensus       151 Lv~~~G~vv~r~~~--~~~p~~~~i~~~i~~~  180 (183)
T PRK10606        151 LVGRDGQVIQRFSP--DMTPEDPIVMESIKLA  180 (183)
T ss_pred             EECCCCcEEEEECC--CCCCCHHHHHHHHHHH
Confidence            99999999999832  2333334455555543

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.77  E-value=4e-18  Score=134.86  Aligned_cols=108  Identities=20%  Similarity=0.343  Sum_probs=95.1

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--HHhHHHHhhcc
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTP  149 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~~  149 (299)
                      |+|++.   +.+|+.+++++++||++||+|| ++||++|+.++|.|.+++++     +.+++|+.|+  ++.+.+|.+++
T Consensus         1 p~f~l~---~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~   71 (123)
T cd03011           1 PLFTAT---TLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK   71 (123)
T ss_pred             CCceee---cCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence            789987   6688999999999999999999 99999999999999999866     6788888764  67778888776


Q ss_pred             cccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        150 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       150 ~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                             +++||++.|++.++.+.|++.      ..|+++|||++| |++++.
T Consensus        72 -------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~  110 (123)
T cd03011          72 -------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTT  110 (123)
T ss_pred             -------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEe
Confidence                   789999999999999999986      569999999999 888874

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.77  E-value=2.8e-18  Score=137.88  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC-HHhHHHHhhcccccCCCCc
Q psy16151         81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK  157 (299)
Q Consensus        81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~  157 (299)
                      |++ +++++++++||++||+|| ++||++|+.++|.|++++++++++  +++|++|+.|. .++..+|.+++       +
T Consensus         5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~   75 (132)
T cd02964           5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P   75 (132)
T ss_pred             cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence            444 699999999999999999 999999999999999999999875  79999999986 45677787765       3


Q ss_pred             cceeee--ec--CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        158 LKIPLL--SD--LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       158 ~~~p~l--~D--~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                       .|+.+  .|  ....+++.|++.      ..|+++|||++|+|+...
T Consensus        76 -~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          76 -PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             -CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence             33333  23  235788889986      569999999999999775

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.73  E-value=2.9e-17  Score=137.51  Aligned_cols=120  Identities=8%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      +.+....|+|++.     +|+.++++||+    ||+|| ++|||+|..++|.|+++++++   |++|++|+.|...    
T Consensus        49 ~~~~~~~~~f~l~-----dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~----  111 (181)
T PRK13728         49 RTEKPAPRWFRLS-----NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG----  111 (181)
T ss_pred             ccCCCCCCccCCC-----CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence            4456678899975     88999999998    77788 999999999999999999887   6999999987431    


Q ss_pred             HhhcccccCCCCccceeeeec-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHHhhc
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l~~L  221 (299)
                                  ...||++.| ..+.+.+.||+..    ...|++||||++|++++ ++.+..    +.+++.+.++.+
T Consensus       112 ------------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~l  170 (181)
T PRK13728        112 ------------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTV  170 (181)
T ss_pred             ------------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHH
Confidence                        357999985 5677888999521    15799999999999975 554433    344555555444

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5.6e-16  Score=123.33  Aligned_cols=131  Identities=26%  Similarity=0.407  Sum_probs=114.9

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      .....+++|+++|+|++.   +.+.+.++|+|+.||..||..+|+-.+|+|..+...+++...++.  ++.|+.||.|-|
T Consensus        13 l~g~~~~vGd~ap~ftl~---~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLP   87 (158)
T COG2077          13 LKGNEPQVGDKAPDFTLV---GKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLP   87 (158)
T ss_pred             ecCCCCccCCcCCceEEE---cCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCCh
Confidence            345579999999999987   668899999999999999999999999999999999999888776  589999999999


Q ss_pred             HhHHHHhhcccccCCCCccc-eeeeecC-chHHHHHhCCcccCC---CCceeEEEEEeCCCcEEEEEe
Q psy16151        140 FTHLAWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSDQ---GHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~~gv~~~~~---g~~~p~~~lID~dG~I~~~~~  202 (299)
                      +.+.+|+.+.       ++. ...++|- +..+.+.||+....-   |...|+.|++|.+|+|+|..+
T Consensus        88 FAq~RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el  148 (158)
T COG2077          88 FAQKRFCGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL  148 (158)
T ss_pred             hHHhhhhhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence            9999999986       554 6778885 477999999986653   677899999999999999875

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.66  E-value=3.9e-16  Score=131.36  Aligned_cols=126  Identities=22%  Similarity=0.329  Sum_probs=96.8

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC----HH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS----HF  140 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~----~~  140 (299)
                      .....|+|+|.   |++|+++++++++||++||+|+++.|...|+..+..|.++++++.+.  .++++.||+|+    ++
T Consensus        28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~  104 (174)
T PF02630_consen   28 NPRIVPDFTLT---DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE  104 (174)
T ss_dssp             TSCSSST-EEE---ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred             CCccCCCcEEE---cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence            45667899987   88999999999999999999999998889999999999999999864  68999999986    56


Q ss_pred             hHHHHhhcccccCCCCccceeeee---cCchHHHHHhCCcccCC------C----CceeEEEEEeCCCcEEEEEe
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ------G----HTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~~gv~~~~~------g----~~~p~~~lID~dG~I~~~~~  202 (299)
                      .+++|.+.+       +..|..+.   +.-.++++.|++.....      +    .+...+|||||+|+|+..+.
T Consensus       105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~  172 (174)
T PF02630_consen  105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN  172 (174)
T ss_dssp             HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred             HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence            677777765       33443332   33377899999875421      1    12356899999999998873

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.66  E-value=4.3e-16  Score=117.64  Aligned_cols=91  Identities=19%  Similarity=0.429  Sum_probs=70.5

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee---cCchH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS---DLTHK  169 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~  169 (299)
                      ||+++|+|| ++||++|..++|.|.+++++++ +.++++|+||.|..  ..+|.+..++.    +.+|+.+.   +....
T Consensus         1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~   73 (95)
T PF13905_consen    1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN----NFPWYNVPFDDDNNSE   73 (95)
T ss_dssp             TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC----TTSSEEEETTTHHHHH
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc----CCCceEEeeCcchHHH
Confidence            799999999 9999999999999999999999 67899999999853  33444444333    34554443   33578


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVL  197 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I  197 (299)
                      +.+.|++.      ..|+++|+|++|+|
T Consensus        74 l~~~~~i~------~iP~~~lld~~G~I   95 (95)
T PF13905_consen   74 LLKKYGIN------GIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHTT-T------SSSEEEEEETTSBE
T ss_pred             HHHHCCCC------cCCEEEEECCCCCC
Confidence            99999996      57999999999997

...

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.59  E-value=1.8e-14  Score=124.30  Aligned_cols=140  Identities=20%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh---hcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151         73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSHFTHLAWVNTP  149 (299)
Q Consensus        73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~---~~gv~vi~Vs~d~~~~~~~~~~~~  149 (299)
                      +|+|.   |++|+.+++.+++||++||+|.++.|..+|+.++..|.++.+++.   ..+++++.||+|+..+..+.++++
T Consensus        49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y  125 (207)
T COG1999          49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY  125 (207)
T ss_pred             ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence            79987   889999999999999999999999988999999999999999998   456889999998865555555555


Q ss_pred             cc-cCCCCccceeeeecC---chHHHHHhCCcccC---CC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151        150 RK-EGGLGKLKIPLLSDL---THKISLDYGVYLSD---QG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR  216 (299)
Q Consensus       150 ~~-~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~---~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~  216 (299)
                      -+ ++   ...|..+...   ..+++++|++....   .+      .+....||||++|+++....+..    ..+++++
T Consensus       126 ~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~----~~~~i~~  198 (207)
T COG1999         126 AELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGE----PPEEIAA  198 (207)
T ss_pred             hcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCC----ChHHHHH
Confidence            33 22   4456666552   37899999998521   11      12345899999999999875433    2678888


Q ss_pred             HHhhcc
Q psy16151        217 LVQAFH  222 (299)
Q Consensus       217 ~l~~L~  222 (299)
                      .++.+-
T Consensus       199 ~l~~l~  204 (207)
T COG1999         199 DLKKLL  204 (207)
T ss_pred             HHHHHh
Confidence            877664

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.4e-13  Score=109.34  Aligned_cols=135  Identities=21%  Similarity=0.380  Sum_probs=109.6

Q ss_pred             ccCCCCCCCCcEEeeee---CCCC-ceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCcE-EEEEeC
Q psy16151         64 FKLVSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAASV  136 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~---~~~G-~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv~-vi~Vs~  136 (299)
                      ...+|+++|..++..-.   +.+| ..++..++ +||.|+|+-.|+.++|.|.. ++|.+.+++++|+++||. |+.||+
T Consensus         2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV   81 (165)
T COG0678           2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV   81 (165)
T ss_pred             ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence            36789999998887431   1122 45566664 89999999999999999985 999999999999999986 899999


Q ss_pred             CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEecc
Q psy16151        137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      |++..+.+|.+...-.    + ...+++|.++++.+.+|+..+..  |   .+.|...|+ +||+|.+.+..+
T Consensus        82 ND~FVm~AWak~~g~~----~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~  148 (165)
T COG0678          82 NDAFVMNAWAKSQGGE----G-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEP  148 (165)
T ss_pred             CcHHHHHHHHHhcCCC----c-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecC
Confidence            9999999999986211    1 67889999999999999987764  2   245778888 699999998755

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.51  E-value=7.2e-14  Score=114.86  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=71.9

Q ss_pred             CCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcccee
Q psy16151         82 GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  161 (299)
Q Consensus        82 ~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  161 (299)
                      ..|+.++++++    .||+|| ++|||+|+.++|.|+++++++   ++.|++|+.|+...                ..||
T Consensus        42 ~~G~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp   97 (153)
T TIGR02738        42 PQGRHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFP   97 (153)
T ss_pred             CcchhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------cccc
Confidence            35677777665    499999 999999999999999999887   68999999886421                1345


Q ss_pred             eeecCchHH-HHHh---CCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHHhh
Q psy16151        162 LLSDLTHKI-SLDY---GVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       162 ~l~D~~~~~-~~~~---gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ...|.+... .+.|   ++.      ..|++||||++|+++. ++.+..    +.+++.+.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~  151 (153)
T TIGR02738        98 DPLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE  151 (153)
T ss_pred             cccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence            444433333 3445   443      5699999999988654 443322    34455554443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG3619|consensus

Probab=99.50  E-value=1e-14  Score=145.98  Aligned_cols=74  Identities=35%  Similarity=0.429  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEE
Q psy16151        205 LPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFI  277 (299)
Q Consensus       205 ~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~  277 (299)
                      .++|.+.+++++++.+.++|+|   |+|||.|    |||++|+|||||||+.+|+.+||.|++||.|.|||||+|.||||
T Consensus       761 LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~gy~~~~RG~i~VKGkGel~Tyfl  840 (867)
T KOG3619|consen  761 LRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLGYRFECRGVINVKGKGELETYFL  840 (867)
T ss_pred             eeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCCeeEEecceEEEecccceeEEEe
Confidence            4577788899999999999987   9999999    89999999999999999999999999999999999999999999


Q ss_pred             E
Q psy16151        278 R  278 (299)
Q Consensus       278 ~  278 (299)
                      .
T Consensus       841 ~  841 (867)
T KOG3619|consen  841 C  841 (867)
T ss_pred             c
Confidence            9

>KOG0541|consensus

Probab=99.40  E-value=1.9e-12  Score=103.53  Aligned_cols=141  Identities=17%  Similarity=0.309  Sum_probs=110.6

Q ss_pred             cccccCCCCCCCCcEEeeeeCCC----CceEEcCcc-CCCeEEEEEEeCCCCCCc-hhhHHHHHHHHHHHhhcCcE-EEE
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQ----LKEIKLSDY-YGKYLVFFFYPLDFTFVC-PTEILAFNDRLEEFHQINTE-VVA  133 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~----G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C-~~~~~~l~~l~~~~~~~gv~-vi~  133 (299)
                      .+.++.+|+..|+-++....+..    +.+++++++ +||.++|+-.|+.++|.| ..++|.+.+..++|+.+|+. |+.
T Consensus         5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic   84 (171)
T KOG0541|consen    5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC   84 (171)
T ss_pred             ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence            35678999999993322122222    238899986 899999999999999996 68899999999999999986 889


Q ss_pred             EeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----C-CceeEEEEEeCCCcEEEEEeccCCC
Q psy16151        134 ASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----G-HTLRGLFIIDRNGVLRQITMNDLPV  207 (299)
Q Consensus       134 Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g-~~~p~~~lID~dG~I~~~~~~~~~~  207 (299)
                      ||+|+++.+.+|.+.+..     .-...++.|+++++.+.+|+..+..    | ...|...++ .||+|.+......+.
T Consensus        85 vSVnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE~~g~  157 (171)
T KOG0541|consen   85 VSVNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVEEGGT  157 (171)
T ss_pred             EecCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEeccCCC
Confidence            999999999999998832     3356789999999999999876642    1 233556777 599999998755444

>KOG2792|consensus

Probab=99.36  E-value=1.6e-12  Score=112.30  Aligned_cols=137  Identities=18%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-Cc--EEEEEeCCC----HHhHHH
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NT--EVVAASVDS----HFTHLA  144 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv--~vi~Vs~d~----~~~~~~  144 (299)
                      -+|+|.   |.+|+.++-.||+|||+||+|.++.|...|+.|+..|.++.+++.+. |+  .-|+||+|+    ++.+++
T Consensus       120 GpF~L~---d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e  196 (280)
T KOG2792|consen  120 GPFSLV---DHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE  196 (280)
T ss_pred             CceEEE---ecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence            379987   77999999999999999999998988889999999999999999854 33  358889886    555566


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----C--C---ceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----G--H---TLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g--~---~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      +.+++    .+.-+.+.-..+.-.++++.|.|+....    +  .   +.-.+|||||+|..+..+    +...+.+++.
T Consensus       197 Y~~eF----~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~----GrN~~~~~~~  268 (280)
T KOG2792|consen  197 YVSEF----HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY----GRNYDADELA  268 (280)
T ss_pred             HHHhc----ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh----cccCCHHHHH
Confidence            66554    2224445555555588999999987541    1  1   123489999999988665    2233455665


Q ss_pred             HHHh
Q psy16151        216 RLVQ  219 (299)
Q Consensus       216 ~~l~  219 (299)
                      +.|.
T Consensus       269 ~~I~  272 (280)
T KOG2792|consen  269 DSIL  272 (280)
T ss_pred             HHHH
Confidence            5543

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.31  E-value=6.1e-12  Score=102.39  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             ceEEcCc--cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151         85 KEIKLSD--YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  162 (299)
Q Consensus        85 ~~v~Lsd--~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  162 (299)
                      +...+.+  .+||++||+|| +.||++|....|.+.++++++.+ ++.++.|.+|...    |                 
T Consensus         9 ~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----~-----------------   65 (142)
T cd02950           9 SSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----W-----------------   65 (142)
T ss_pred             ccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----c-----------------
Confidence            3444443  37899999999 99999999999999999999875 5788888887431    1                 


Q ss_pred             eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                           ..+++.|++.      ..|+++++|++|+++....+
T Consensus        66 -----~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G   95 (142)
T cd02950          66 -----LPEIDRYRVD------GIPHFVFLDREGNEEGQSIG   95 (142)
T ss_pred             -----HHHHHHcCCC------CCCEEEEECCCCCEEEEEeC
Confidence                 1356778886      57999999999999988754

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG4171|consensus

Probab=99.28  E-value=1.7e-12  Score=125.87  Aligned_cols=88  Identities=28%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             EEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhcC-ceEEe
Q psy16151        190 IIDRN-GVLRQITMNDLPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDHG-VTCEL  260 (299)
Q Consensus       190 lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~~-~~~~~  260 (299)
                      +++|+ |+=+.+     ++|.|.+++++++.+.++|+|   |++||+|    |++.|++||+|+.|++.|++.+ |+++.
T Consensus       526 v~~p~~~~pi~i-----RiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~p  600 (671)
T KOG4171|consen  526 VVSPVTGEPIQI-----RIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEP  600 (671)
T ss_pred             hcCcCCCCceEE-----EEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeee
Confidence            44554 554433     477889999999999999999   9999999    8999999999999999999888 99999


Q ss_pred             cceeeecccceeEEEEEEcccc
Q psy16151        261 RGRTFIKGKGLITTYFIRQQEI  282 (299)
Q Consensus       261 rg~~~~k~~~~~~t~~~~~~~~  282 (299)
                      ||++.|||||.|.||||....+
T Consensus       601 Rg~v~vk~kg~m~tyFL~~~~~  622 (671)
T KOG4171|consen  601 RGRVEVKGKGPMETYFLERSLG  622 (671)
T ss_pred             cCccccCCCCceEEEEEEecCC
Confidence            9999999999999999986554

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=4.6e-11  Score=95.79  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=88.6

Q ss_pred             CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhH
Q psy16151         71 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH  142 (299)
Q Consensus        71 aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~  142 (299)
                      +=||++.   +.+|++++|++|+||++||+-. |+-|..-+ +...|..+|++|+++|+.|+++..|        +.+++
T Consensus         5 ~yd~~~~---~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI   79 (162)
T COG0386           5 IYDFSVK---DIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI   79 (162)
T ss_pred             cccceee---ccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence            3477876   6699999999999998777776 88898666 8889999999999999999999754        56778


Q ss_pred             HHHhhcccccCCCCccceeeeecCc------hHHHHHhCCcccC--CCCc---eeEEEEEeCCCcEEEEEe
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLT------HKISLDYGVYLSD--QGHT---LRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~------~~~~~~~gv~~~~--~g~~---~p~~~lID~dG~I~~~~~  202 (299)
                      .+|.+..  +    +++||++.--+      ..+.+.+.-....  .+..   .=+.||||+||+|+.++.
T Consensus        80 ~~fC~~~--Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~  144 (162)
T COG0386          80 AKFCQLN--Y----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS  144 (162)
T ss_pred             HHHHHhc--c----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence            8888763  3    89999986332      2232222211100  0111   135899999999999984

>TIGR02740 TraF-like TraF-like protein

Probab=99.23  E-value=2.3e-11  Score=109.25  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeee
Q psy16151         84 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLL  163 (299)
Q Consensus        84 G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l  163 (299)
                      .+...+++++|+++||+|| ++||++|..++|.|.++++++   |+.|++||+|....                ..||..
T Consensus       156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~~  215 (271)
T TIGR02740       156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPNA  215 (271)
T ss_pred             HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCcc
Confidence            3457889999999999999 889999999999999998887   58999999986421                125555


Q ss_pred             ecCchHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        164 SDLTHKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       164 ~D~~~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       +.+..+++.|||.      ..|++||+|++ |+|..+..+..    ..+++.+.+..+
T Consensus       216 -~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~----s~~eL~~~i~~~  263 (271)
T TIGR02740       216 -RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVM----SADELVDRILLA  263 (271)
T ss_pred             -cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence             4456789999996      57999999995 55554443322    445565555544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG2501|consensus

Probab=99.22  E-value=7.5e-11  Score=95.65  Aligned_cols=107  Identities=21%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             CCCCceEEcC-ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC-HHhHHHHhhcccccCCCC
Q psy16151         81 DGQLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLG  156 (299)
Q Consensus        81 ~~~G~~v~Ls-d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~  156 (299)
                      +.+|..+-.+ +++||.|.++|- +.|||+|+.-.|.|.++|+++++.  .++||.||.|. .+++.++....       
T Consensus        19 ~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~-------   90 (157)
T KOG2501|consen   19 KQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH-------   90 (157)
T ss_pred             ccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc-------
Confidence            5567777666 679987777775 999999999999999999999864  38999999986 55666777654       


Q ss_pred             ccceeee---ecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        157 KLKIPLL---SDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       157 ~~~~p~l---~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .-.|..+   .|...++.+.|++.      .+|+..++.+||.++...
T Consensus        91 ~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d  132 (157)
T KOG2501|consen   91 HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED  132 (157)
T ss_pred             CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence            3444444   33348899999996      579999999999888654

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.21  E-value=1.8e-10  Score=88.47  Aligned_cols=90  Identities=11%  Similarity=0.039  Sum_probs=67.1

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++.+||+|||+|| ++||++|+...|.|.++++++  .++.++.|+.|....                         ...
T Consensus        11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~~   62 (103)
T cd02985          11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TME   62 (103)
T ss_pred             HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HHH
Confidence            3457899999999 999999999999999999998  468888888765321                         125


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +++.|++.      ..|+++++ ++|+++..+.+     ....++.+.+.
T Consensus        63 l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~~  100 (103)
T cd02985          63 LCRREKII------EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDVL  100 (103)
T ss_pred             HHHHcCCC------cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHHH
Confidence            66778885      46775555 89999887733     33456665554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG1023|consensus

Probab=99.06  E-value=7e-11  Score=112.95  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=71.8

Q ss_pred             CCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhc-CceEEecceeeecccceeEEEE
Q psy16151        205 LPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDH-GVTCELRGRTFIKGKGLITTYF  276 (299)
Q Consensus       205 ~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~-~~~~~~rg~~~~k~~~~~~t~~  276 (299)
                      .+.+.+.+++.+.+.++++|+|   |+|||+|    |+|. ++||+|+++..+|.++ +|.++.||++++||||.+.|||
T Consensus       393 iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG~v~~kgkg~~~t~w  471 (484)
T KOG1023|consen  393 LRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERGLVELKGKGVMSTYW  471 (484)
T ss_pred             eeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccCcEEeecCceeeeEE
Confidence            3466778899999999999999   9999999    8999 9999999999999766 6999999999999999999999


Q ss_pred             EEcccccc
Q psy16151        277 IRQQEIEK  284 (299)
Q Consensus       277 ~~~~~~~~  284 (299)
                      |.|.....
T Consensus       472 l~g~~~~~  479 (484)
T KOG1023|consen  472 LLGESSKS  479 (484)
T ss_pred             eccCcccc
Confidence            99976643

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.04  E-value=1.3e-09  Score=86.36  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=72.6

Q ss_pred             CC-CeEEEEEEeCCCCCCchhhHHHHH---HHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         93 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        93 ~G-k~vlL~F~~~~~cp~C~~~~~~l~---~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      .| |+++|+|| ++||++|....+.+.   ++.+.+++ ++.++.|++|.......               |+.......
T Consensus        12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~---------------~~~~~~~~~   74 (125)
T cd02951          12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTD---------------FDGEALSEK   74 (125)
T ss_pred             cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeec---------------cCCCCccHH
Confidence            57 89999998 999999999998875   56566653 78888888875432211               111123457


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +++++|++.      ..|+++++|++ |+++.+..+..    ..+++.+.++.+.
T Consensus        75 ~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~----~~~~~~~~l~~~~  119 (125)
T cd02951          75 ELARKYRVR------FTPTVIFLDPEGGKEIARLPGYL----PPDEFLAYLEYVQ  119 (125)
T ss_pred             HHHHHcCCc------cccEEEEEcCCCCceeEEecCCC----CHHHHHHHHHHHH
Confidence            899999986      57999999999 89998874432    3455666665543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG1651|consensus

Probab=99.02  E-value=1.8e-09  Score=87.79  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=88.4

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHH
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF  140 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~  140 (299)
                      ..+=||+..   |.+|+.++|+.|+||++||+-. |+.|..-..+...|+.++++|+++|++|++...+        +.+
T Consensus        12 ~siydf~~~---d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~   87 (171)
T KOG1651|consen   12 GSIYDFSAK---DLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE   87 (171)
T ss_pred             cceeeeEEe---cCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence            345578876   6699999999999998888887 8889988888889999999999999999999754        345


Q ss_pred             hHHHHhhcccccCCCCccceeeee--cCc----hHHHHHhCCcccC-CCCce---eEEEEEeCCCcEEEEEe
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLS--DLT----HKISLDYGVYLSD-QGHTL---RGLFIIDRNGVLRQITM  202 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~--D~~----~~~~~~~gv~~~~-~g~~~---p~~~lID~dG~I~~~~~  202 (299)
                      ++..+...  ++    +..||+..  |.+    ..+.+-+.-.... -|..+   =+-||||+||.|+.++.
T Consensus        88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~  153 (171)
T KOG1651|consen   88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS  153 (171)
T ss_pred             HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence            56666652  23    67788874  222    2233322211100 01111   24799999999999984

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.00  E-value=4.6e-09  Score=80.42  Aligned_cols=86  Identities=13%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .|++++|+|| ++||++|+...|.|.++++++++..+.++.+..|.                             .++++
T Consensus        16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-----------------------------~~~~~   65 (102)
T cd02948          16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-----------------------------IDTLK   65 (102)
T ss_pred             cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------HHHHH
Confidence            4789999999 99999999999999999998875556666666552                             23456


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +|++.      ..|+.+++ ++|+++....+     .....+.+.++.
T Consensus        66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~  101 (102)
T cd02948          66 RYRGK------CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITE  101 (102)
T ss_pred             HcCCC------cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhh
Confidence            78875      45765555 79999887743     245667776654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.99  E-value=3.2e-09  Score=81.06  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++++||++||.|| ++||++|+...|.+.+++++++  ++.++.|..++                           ....
T Consensus        14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~   63 (100)
T cd02999          14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS   63 (100)
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence            4679999999999 9999999999999999999986  46677664331                           1236


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      ++++|++.      ..|++++++ +| .+..+
T Consensus        64 l~~~~~V~------~~PT~~lf~-~g-~~~~~   87 (100)
T cd02999          64 LLSRYGVV------GFPTILLFN-ST-PRVRY   87 (100)
T ss_pred             HHHhcCCe------ecCEEEEEc-CC-ceeEe
Confidence            77889986      579999996 45 44444

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.98  E-value=7.8e-09  Score=80.43  Aligned_cols=90  Identities=11%  Similarity=0.226  Sum_probs=67.8

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ...|+++||+|| ++||++|....|.+.++.+++++.++.+..|+.|.                            +..+
T Consensus        21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l   71 (111)
T cd02963          21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRL   71 (111)
T ss_pred             ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHH
Confidence            347899999999 99999999999999999999987677777776552                            2356


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++|++.      ..|+++++ ++|+++....+.    ...+++.+.++.
T Consensus        72 ~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~  110 (111)
T cd02963          72 ARKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRK  110 (111)
T ss_pred             HHHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhc
Confidence            7788885      57899999 599887665222    235566666554

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.93  E-value=9e-09  Score=89.12  Aligned_cols=143  Identities=18%  Similarity=0.259  Sum_probs=102.0

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCce-EEcCcc-C-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKE-IKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-  136 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~-v~Lsd~-~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-  136 (299)
                      ......+|..|||+.+.++   +|+. .++.|| + ++|+||+|...+ ||+-+..+..++++.++|.+ -++++.|-+ 
T Consensus        69 l~~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d-~adFl~VYI~  143 (237)
T PF00837_consen   69 LFKEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSD-VADFLIVYIE  143 (237)
T ss_pred             cccceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhh-hhheehhhHh
Confidence            4456788999999998855   7777 999999 4 479999998555 89999999999999999986 334554421 


Q ss_pred             -----C------------CHHhHHHHhh---cccccCCCCccceeeeecC-chHHHHHhCCcccCCCCceeEEEEEeCCC
Q psy16151        137 -----D------------SHFTHLAWVN---TPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNG  195 (299)
Q Consensus       137 -----d------------~~~~~~~~~~---~~~~~~~~~~~~~p~l~D~-~~~~~~~~gv~~~~~g~~~p~~~lID~dG  195 (299)
                           |            .+.++++-++   .+.++    ...+|++.|. ++...++||...+       ..||| .||
T Consensus       144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~Pe-------RlyIi-~~g  211 (237)
T PF00837_consen  144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGALPE-------RLYII-QDG  211 (237)
T ss_pred             hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCCcc-------eEEEE-ECC
Confidence                 1            1112222222   22222    4678999886 6899999998622       47777 499


Q ss_pred             cEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        196 VLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       196 ~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +|+|.. +..+.+-+.+++.+.+++.
T Consensus       212 kv~Y~G-g~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  212 KVVYKG-GPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             EEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence            999997 3344566788888887754

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG3618|consensus

Probab=98.89  E-value=5.6e-10  Score=108.75  Aligned_cols=77  Identities=23%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHhhcc---CCCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEEEc
Q psy16151        207 VGRSVDETLRLVQAFH---DPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQ  279 (299)
Q Consensus       207 ~g~~~~evl~~l~~L~---~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~~~  279 (299)
                      .|-+.+++-+++.+-.   ...||++||.|    |||++.+|||++++++.|.+. |++|+||.|+||||+.|.||++.+
T Consensus      1192 vG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~r-YeFe~Rg~v~VKGkd~M~tyLy~~ 1270 (1318)
T KOG3618|consen 1192 VGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKR-YEFEYRGTVNVKGKDQMKTYLYPK 1270 (1318)
T ss_pred             eeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHhh-ccccccceEEEeccCcceeEEecc
Confidence            3344455555554444   45679999999    899999999999999999886 999999999999999999999988


Q ss_pred             ccccc
Q psy16151        280 QEIEK  284 (299)
Q Consensus       280 ~~~~~  284 (299)
                      ..+..
T Consensus      1271 r~d~~ 1275 (1318)
T KOG3618|consen 1271 RTDHR 1275 (1318)
T ss_pred             ccCCC
Confidence            77654

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.86  E-value=3e-08  Score=74.63  Aligned_cols=72  Identities=14%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +|+++||+|| ++||++|....|.+.++.+.+.+ .+.++.|..|.                            ...+++
T Consensus        11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~   60 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIAQ   60 (96)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998865 45566665442                            245777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .|++.      ..|++++++ +|+++..+
T Consensus        61 ~~~i~------~~Pt~~~~~-~g~~~~~~   82 (96)
T cd02956          61 QFGVQ------ALPTVYLFA-AGQPVDGF   82 (96)
T ss_pred             HcCCC------CCCEEEEEe-CCEEeeee
Confidence            88885      578999996 99988765

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.84  E-value=1.1e-08  Score=79.11  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHH---HHhhcCcEEEEEeCCCHHh-HHHHhhcccccCCCCccceeeeecCch
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE---EFHQINTEVVAASVDSHFT-HLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~---~~~~~gv~vi~Vs~d~~~~-~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      .||++|++|| ..|||.|....+.+.+..+   .++ .++.++.++.++... ..+|.+..       +..+  +.....
T Consensus         4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~   72 (112)
T PF13098_consen    4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFD-------GQKN--VRLSNK   72 (112)
T ss_dssp             TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHT-------CHSS--CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccc-------cchh--hhHHHH
Confidence            5789999998 9999999988777775433   332 368889998877543 33455432       2222  222346


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      ++++.||+.      ..|+.+++|++|+++++..+..    +.+++++.
T Consensus        73 ~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~----~~~~l~~~  111 (112)
T PF13098_consen   73 ELAQRYGVN------GTPTIVFLDKDGKIVYRIPGYL----SPEELLKM  111 (112)
T ss_dssp             HHHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHH
T ss_pred             HHHHHcCCC------ccCEEEEEcCCCCEEEEecCCC----CHHHHHhh
Confidence            899999997      4689999999999998764332    34555443

...

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.79  E-value=3.7e-08  Score=75.43  Aligned_cols=77  Identities=10%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .||++||+|| +.||++|....+.+   .++.+.+++ ++.++.|..+...                        +....
T Consensus        10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~------------------------~~~~~   63 (104)
T cd02953          10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKND------------------------PEITA   63 (104)
T ss_pred             cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCC------------------------HHHHH
Confidence            5789999999 99999999998877   567777765 7788877765311                        00235


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeC-CCcEEEEE
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDR-NGVLRQIT  201 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~-dG~I~~~~  201 (299)
                      ++++|++.      ..|+++++++ +|++..+.
T Consensus        64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~   90 (104)
T cd02953          64 LLKRFGVF------GPPTYLFYGPGGEPEPLRL   90 (104)
T ss_pred             HHHHcCCC------CCCEEEEECCCCCCCCccc
Confidence            67778885      5799999999 89988776

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PRK09381 trxA thioredoxin; Provisional

Probab=98.74  E-value=1.2e-07  Score=73.19  Aligned_cols=87  Identities=14%  Similarity=0.280  Sum_probs=64.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| ++|||+|+...|.+.++.+++.+ ++.++.|..|..                            ..+++
T Consensus        20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~----------------------------~~~~~   69 (109)
T PRK09381         20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   69 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC----------------------------hhHHH
Confidence            3678999999 99999999999999999999975 577777765531                            23556


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+++++ ++|+++....+.    ...+++.+.+++
T Consensus        70 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~  106 (109)
T PRK09381         70 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA  106 (109)
T ss_pred             hCCCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence            77875      56888888 699998877333    235566665554

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.74  E-value=7.8e-08  Score=74.86  Aligned_cols=75  Identities=15%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|||.|| ++||++|+...|.|.++.+++.+ .+.++-|.+|.                            ..+++.
T Consensus        13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~----------------------------~~~la~   62 (114)
T cd02954          13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDE----------------------------VPDFNK   62 (114)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHHH
Confidence            4578999999 99999999999999999998864 24566555542                            346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      .|+|.      ..|+.+++ ++|+.+.+..+.
T Consensus        63 ~~~V~------~iPTf~~f-k~G~~v~~~~G~   87 (114)
T cd02954          63 MYELY------DPPTVMFF-FRNKHMKIDLGT   87 (114)
T ss_pred             HcCCC------CCCEEEEE-ECCEEEEEEcCC
Confidence            89986      57888888 799999888643

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.72  E-value=1.1e-07  Score=73.29  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhHHH
Q psy16151         73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTHLA  144 (299)
Q Consensus        73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~~~  144 (299)
                      +|++.   |.+|++++|++|+||++||+-. |+-|..-. +...|++++++|+++|++|+++..+        +.+++++
T Consensus         3 df~~~---~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~   77 (108)
T PF00255_consen    3 DFSAK---DIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE   77 (108)
T ss_dssp             GSEEE---BTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred             ceeee---CCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence            56766   6699999999999998887777 78898777 9999999999999999999999764        3555666


Q ss_pred             HhhcccccCCCCccceeeee
Q psy16151        145 WVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~  164 (299)
                      +....  +    +..||+..
T Consensus        78 ~~~~~--~----~~~F~vf~   91 (108)
T PF00255_consen   78 FCKEK--F----GVTFPVFE   91 (108)
T ss_dssp             HHCHC--H----T-SSEEBS
T ss_pred             HHHhc--c----CCcccceE
Confidence            66541  2    67888874

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.70  E-value=9.8e-08  Score=73.40  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .|++++|.|| +.||++|....|.+.++++++.+ .+.++.|+.|..                          ...++++
T Consensus        17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~   68 (109)
T cd03002          17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG   68 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence            4678999999 99999999999999999998874 577888877642                          1346777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGV  196 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~  196 (299)
                      .|++.      ..|+.+++++.+.
T Consensus        69 ~~~i~------~~Pt~~~~~~~~~   86 (109)
T cd03002          69 KYGVQ------GFPTLKVFRPPKK   86 (109)
T ss_pred             HcCCC------cCCEEEEEeCCCc
Confidence            88886      5689999987763

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.65  E-value=1.9e-07  Score=72.22  Aligned_cols=75  Identities=9%  Similarity=0.186  Sum_probs=57.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +||+++|.|| +.||++|....|.+.++++++++.++.+..|..|..                           +..+++
T Consensus        20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~~   71 (109)
T cd02993          20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFAK   71 (109)
T ss_pred             cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhHH
Confidence            5789999998 999999999999999999999876788888876641                           012233


Q ss_pred             -HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        173 -DYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       173 -~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                       .|++.      ..|+.++++++++....+
T Consensus        72 ~~~~v~------~~Pti~~f~~~~~~~~~y   95 (109)
T cd02993          72 EELQLK------SFPTILFFPKNSRQPIKY   95 (109)
T ss_pred             hhcCCC------cCCEEEEEcCCCCCceec
Confidence             36764      468999998877655444

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.64  E-value=3.6e-07  Score=69.36  Aligned_cols=85  Identities=14%  Similarity=0.261  Sum_probs=58.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +|+ ++|.|| +.||++|....|.+.+++++++..++.+..|..+.                            +..+++
T Consensus        16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~~   65 (101)
T cd02994          16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLSG   65 (101)
T ss_pred             CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHHH
Confidence            566 678898 99999999999999999988765566666554332                            234677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      .|++.      ..|+++++ ++|++ ..+.+    ....+++.+.++
T Consensus        66 ~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~  100 (101)
T cd02994          66 RFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE  100 (101)
T ss_pred             HcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence            88885      56888876 89986 33322    234555555543

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.63  E-value=1.1e-07  Score=74.77  Aligned_cols=82  Identities=13%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      ..+...+|+|+|+|| ++||++|....|.+.+..+... .+..++.|.+|....                          
T Consensus        13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~--------------------------   64 (117)
T cd02959          13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE--------------------------   64 (117)
T ss_pred             HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC--------------------------
Confidence            334457899999999 9999999999999988766543 344566666653210                          


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                       ...+.|++.    |...|+++++|++|+++.++.
T Consensus        65 -~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~   94 (117)
T cd02959          65 -PKDEEFSPD----GGYIPRILFLDPSGDVHPEII   94 (117)
T ss_pred             -chhhhcccC----CCccceEEEECCCCCCchhhc
Confidence             011133332    113689999999999988654

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK10996 thioredoxin 2; Provisional

Probab=98.62  E-value=4.7e-07  Score=73.31  Aligned_cols=87  Identities=13%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+++|+|| ++||++|+...|.|.++++++.+ ++.++.|..+.                            ..++++
T Consensus        51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~  100 (139)
T PRK10996         51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA  100 (139)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999988764 46666664432                            246778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +|++.      ..|+.+++ ++|+++....+.    ...+++.+.++.
T Consensus       101 ~~~V~------~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~  137 (139)
T PRK10996        101 RFRIR------SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNE  137 (139)
T ss_pred             hcCCC------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHH
Confidence            88886      46887776 599998876432    245566666654

>PHA02278 thioredoxin-like protein

Probab=98.60  E-value=4.6e-07  Score=69.52  Aligned_cols=78  Identities=13%  Similarity=0.060  Sum_probs=59.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|+...|.+.++.+++.. .+.++-|.+|...                 .      | ..++++
T Consensus        13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------~------d-~~~l~~   66 (103)
T PHA02278         13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------V------D-REKAVK   66 (103)
T ss_pred             CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------c------c-cHHHHH
Confidence            5789999999 99999999999999999877532 3567777776421                 0      1 235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      .|+|.      ..|+.+++ ++|+.+.+..+
T Consensus        67 ~~~I~------~iPT~i~f-k~G~~v~~~~G   90 (103)
T PHA02278         67 LFDIM------STPVLIGY-KDGQLVKKYED   90 (103)
T ss_pred             HCCCc------cccEEEEE-ECCEEEEEEeC
Confidence            88986      56888888 68999988744

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.59  E-value=4.5e-07  Score=74.43  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=58.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +++++||+|| ++||++|....|.+.++.+++.+.++.++.|++|...                            ++++
T Consensus        46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~----------------------------~la~   96 (152)
T cd02962          46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP----------------------------NVAE   96 (152)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH----------------------------HHHH
Confidence            4578999999 9999999999999999999998667888888876432                            3344


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +|++.....-...|+.+++ ++|+.+.+..+
T Consensus        97 ~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G  126 (152)
T cd02962          97 KFRVSTSPLSKQLPTIILF-QGGKEVARRPY  126 (152)
T ss_pred             HcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence            4454310000136888888 59999888754

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0907|consensus

Probab=98.58  E-value=7.2e-07  Score=68.74  Aligned_cols=84  Identities=14%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|.+|++|+ ++||++|+...|.+.++..+|.+  +.++-|.+|.                            ..++++
T Consensus        20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~   68 (106)
T KOG0907|consen   20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAK   68 (106)
T ss_pred             CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHH
Confidence            3588888886 99999999999999999999986  8888888774                            135667


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      .|++.      ..|+..++ ++|+.+....+.     +.+++.+.+.
T Consensus        69 ~~~V~------~~PTf~f~-k~g~~~~~~vGa-----~~~~l~~~i~  103 (106)
T KOG0907|consen   69 EFNVK------AMPTFVFY-KGGEEVDEVVGA-----NKAELEKKIA  103 (106)
T ss_pred             hcCce------EeeEEEEE-ECCEEEEEEecC-----CHHHHHHHHH
Confidence            78886      56887777 889888777433     3445555554

>KOG0910|consensus

Probab=98.57  E-value=3e-07  Score=74.17  Aligned_cols=73  Identities=11%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++||||+|| +.||.+|....|.|.++..+|.+ .+++.-|.+|                            ...+++.
T Consensus        60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD----------------------------~~~ela~  109 (150)
T KOG0910|consen   60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTD----------------------------EHPELAE  109 (150)
T ss_pred             cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccc----------------------------cccchHh
Confidence            4679999999 99999999999999999998853 4555555443                            3457788


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      .|+|.      +.|+++++ ++|+.+....
T Consensus       110 ~Y~I~------avPtvlvf-knGe~~d~~v  132 (150)
T KOG0910|consen  110 DYEIS------AVPTVLVF-KNGEKVDRFV  132 (150)
T ss_pred             hccee------eeeEEEEE-ECCEEeeeec
Confidence            89986      67999999 6999986663

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.56  E-value=5.7e-07  Score=68.83  Aligned_cols=87  Identities=13%  Similarity=0.154  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ++++++|.|| ++||++|+...|.+.++++++++.+  +.+..+..+                            ....+
T Consensus        14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~----------------------------~~~~~   64 (104)
T cd03000          14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT----------------------------AYSSI   64 (104)
T ss_pred             cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc----------------------------cCHhH
Confidence            4568888888 9999999999999999999997654  333333322                            12356


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++.|++.      ..|+.++++ +|.+ ..+.+    ....+++.+.++.
T Consensus        65 ~~~~~I~------~~Pt~~l~~-~~~~-~~~~G----~~~~~~l~~~~~~  102 (104)
T cd03000          65 ASEFGVR------GYPTIKLLK-GDLA-YNYRG----PRTKDDIVEFANR  102 (104)
T ss_pred             HhhcCCc------cccEEEEEc-CCCc-eeecC----CCCHHHHHHHHHh
Confidence            7788886      579999994 4543 33322    2345666665553

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.54  E-value=1e-06  Score=66.22  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=54.7

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|+|| ++||++|+...+.|.++.+++ ..++.++.|..+.                            ..++++.
T Consensus        14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------~~~~~~~   63 (97)
T cd02984          14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------LPEISEK   63 (97)
T ss_pred             CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------CHHHHHh
Confidence            689999999 999999999999999998887 3355555553221                            2457778


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      |++.      ..|+.+++ ++|+++....
T Consensus        64 ~~i~------~~Pt~~~~-~~g~~~~~~~   85 (97)
T cd02984          64 FEIT------AVPTFVFF-RNGTIVDRVS   85 (97)
T ss_pred             cCCc------cccEEEEE-ECCEEEEEEe
Confidence            8885      46888888 5899987763

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.52  E-value=1.3e-06  Score=66.01  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++++|| +.||+.|....+.+.++.+++.+ ++.++.|..|.                            +.++++
T Consensus        12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~   61 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAE   61 (97)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            4678888888 99999999999999999988864 56666665442                            235667


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      .|++.      ..|+.++++ +|+++....
T Consensus        62 ~~~v~------~vPt~~i~~-~g~~v~~~~   84 (97)
T cd02949          62 AAGIM------GTPTVQFFK-DKELVKEIS   84 (97)
T ss_pred             HCCCe------eccEEEEEE-CCeEEEEEe
Confidence            77875      568999995 899887763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.52  E-value=5.3e-07  Score=68.54  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|.|| +.||++|....|.+.++.+++++ .+.+..|+.|.                            ...+++
T Consensus        17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~~   66 (101)
T cd03003          17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLCR   66 (101)
T ss_pred             CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHHH
Confidence            5678999998 99999999999999999999875 46677776653                            224666


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .|++.      ..|+.+++ ++|+....+
T Consensus        67 ~~~v~------~~Pt~~~~-~~g~~~~~~   88 (101)
T cd03003          67 SQGVN------SYPSLYVF-PSGMNPEKY   88 (101)
T ss_pred             HcCCC------ccCEEEEE-cCCCCcccC
Confidence            77775      46888888 789865443

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.49  E-value=1.4e-06  Score=66.13  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ++++++|+|| ++||+.|+...|.+.++.+.+++. .+.++.|..+.                          |....+.
T Consensus        16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~   68 (104)
T cd02997          16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK   68 (104)
T ss_pred             hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence            4678999999 999999999999999999988753 34444444332                          1134677


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +.|++.      ..|+.++ .++|+++..+
T Consensus        69 ~~~~i~------~~Pt~~~-~~~g~~~~~~   91 (104)
T cd02997          69 EEYNVK------GFPTFKY-FENGKFVEKY   91 (104)
T ss_pred             HhCCCc------cccEEEE-EeCCCeeEEe
Confidence            888885      4577554 4789977665

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.48  E-value=1e-06  Score=67.23  Aligned_cols=73  Identities=7%  Similarity=0.067  Sum_probs=55.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|.|| ++||++|+...|.+.++.+++++ ++.+..|..+.                            ..++++
T Consensus        18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~   67 (104)
T cd03004          18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK----------------------------YESLCQ   67 (104)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------hHHHHH
Confidence            4568999998 99999999999999999998853 46666665442                            335677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .|++.      ..|+.+++.+.|+....+
T Consensus        68 ~~~i~------~~Pt~~~~~~g~~~~~~~   90 (104)
T cd03004          68 QANIR------AYPTIRLYPGNASKYHSY   90 (104)
T ss_pred             HcCCC------cccEEEEEcCCCCCceEc
Confidence            78885      568999997665776665

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.47  E-value=1.2e-06  Score=66.31  Aligned_cols=72  Identities=8%  Similarity=0.188  Sum_probs=54.0

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++|.|| +.||++|+...|.+.++++++++  .++.++.|..+.                            +..+++.
T Consensus        18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~   68 (102)
T cd03005          18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE   68 (102)
T ss_pred             CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence            5888988 99999999999999999999975  245555554331                            2356777


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      |++.      ..|+.+++ ++|+.+..+.+
T Consensus        69 ~~v~------~~Pt~~~~-~~g~~~~~~~G   91 (102)
T cd03005          69 FQVR------GYPTLLLF-KDGEKVDKYKG   91 (102)
T ss_pred             cCCC------cCCEEEEE-eCCCeeeEeeC
Confidence            8875      56898888 68887766533

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.46  E-value=1.6e-06  Score=65.35  Aligned_cols=88  Identities=11%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ++++++|.|| ++||+.|+...+.+.++.+.++..+ +.++.+..                            |.+..+.
T Consensus        12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~----------------------------~~~~~~~   62 (102)
T TIGR01126        12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA----------------------------TAEKDLA   62 (102)
T ss_pred             cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc----------------------------cchHHHH
Confidence            6889999999 9999999999999999988887543 44443332                            2235677


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +.|++.      ..|+.+++++++. ...+.+    ....+++...++.
T Consensus        63 ~~~~i~------~~P~~~~~~~~~~-~~~~~g----~~~~~~l~~~i~~  100 (102)
T TIGR01126        63 SRFGVS------GFPTIKFFPKGKK-PVDYEG----GRDLEAIVEFVNE  100 (102)
T ss_pred             HhCCCC------cCCEEEEecCCCc-ceeecC----CCCHHHHHHHHHh
Confidence            788885      5689999988876 333322    2345566665543

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.45  E-value=1.8e-06  Score=66.46  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=52.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcccee-eeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~  171 (299)
                      .+++++|.|| +.||++|+...|.+.++++++++..-                 ..       +.+.|. +-+|.+..++
T Consensus        17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~-----------------~~-------~~~~~~~vd~d~~~~l~   71 (108)
T cd02996          17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFP-----------------DA-------GKVVWGKVDCDKESDIA   71 (108)
T ss_pred             cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccC-----------------CC-------CcEEEEEEECCCCHHHH
Confidence            3568888888 99999999999999999988764210                 00       012222 2234456788


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEE
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLR  198 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~  198 (299)
                      ++||+.      ..|+.+++ ++|++.
T Consensus        72 ~~~~v~------~~Ptl~~~-~~g~~~   91 (108)
T cd02996          72 DRYRIN------KYPTLKLF-RNGMMM   91 (108)
T ss_pred             HhCCCC------cCCEEEEE-eCCcCc
Confidence            899986      57898888 789854

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.45  E-value=1.5e-06  Score=67.42  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|.|||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|.                            ..++++
T Consensus        13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~   62 (114)
T cd02986          13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQ   62 (114)
T ss_pred             CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHH
Confidence            5789999999 999999999999999999998642 6777776653                            245677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      .|++.      ..|+++++ ++|+-.....+
T Consensus        63 ~y~I~------amPtfvff-kngkh~~~d~g   86 (114)
T cd02986          63 YFDIS------YIPSTIFF-FNGQHMKVDYG   86 (114)
T ss_pred             hcCce------eCcEEEEE-ECCcEEEEecC
Confidence            78875      46888877 78887777653

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PTZ00051 thioredoxin; Provisional

Probab=98.44  E-value=1.8e-06  Score=65.04  Aligned_cols=73  Identities=12%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| ++||++|+...+.+.++.+++.  ++.++.|..+.                            ...+++
T Consensus        17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~   65 (98)
T PTZ00051         17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE   65 (98)
T ss_pred             cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence            4578899998 9999999999999999988764  45665554321                            246777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      .|++.      ..|+.+++ ++|+++....+
T Consensus        66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G   89 (98)
T PTZ00051         66 KENIT------SMPTFKVF-KNGSVVDTLLG   89 (98)
T ss_pred             HCCCc------eeeEEEEE-eCCeEEEEEeC
Confidence            88885      46876555 89999988744

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.42  E-value=7.8e-06  Score=69.66  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCC-eEEEEEEe-----CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGK-YLVFFFYP-----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk-~vlL~F~~-----~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .|..+..-.+..+.   ..+|+ ++|+|+ .|+ -+||+.|+     ..-||.|...+.++......+.++++.+++||.
T Consensus        39 ~LP~v~v~~~Y~F~---g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr  114 (211)
T PF05988_consen   39 RLPMVEVDKDYVFD---GPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR  114 (211)
T ss_pred             hCCCccCCCCeEEe---CCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence            34445555566664   44555 999996 777 45555554     456999999999998888889999999999999


Q ss_pred             CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCcee--EEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151        137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR--GLFIIDRNGVLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p--~~~lID~dG~I~~~~~~~~~~g~~~~ev  214 (299)
                      .+.+.+.+|.+..       ++.||.++.....+...|++..+..+ ..|  ++|+-|. |+|...+..   .++..+.+
T Consensus       115 aP~~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~-~~~g~svF~Rdg-~~VfhTyst---~~RG~e~l  182 (211)
T PF05988_consen  115 APLEKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGG-EMPGLSVFLRDG-GRVFHTYST---YGRGGERL  182 (211)
T ss_pred             CCHHHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCC-CceeEEEEEEcC-CEEEEEeec---CCCCchhh
Confidence            9999999999987       99999999998889999998654322 223  3555554 777766633   33344444


Q ss_pred             HHHHhhccCCCCCCccc
Q psy16151        215 LRLVQAFHDPLRTGAIN  231 (299)
Q Consensus       215 l~~l~~L~~~~~g~~vn  231 (299)
                      .....-|....+|+...
T Consensus       183 ~~~~~lLDlTP~GR~E~  199 (211)
T PF05988_consen  183 MPTWNLLDLTPLGRQED  199 (211)
T ss_pred             hhHHHHHhcCCCCCCCC
Confidence            44444444555555543

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.40  E-value=9.4e-07  Score=69.47  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEeC-------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         93 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        93 ~Gk~vlL~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      +|++|+|+|| +       +||++|+...|.+.++.+++++ ++.++-|.+|...   .|                  .|
T Consensus        20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---~w------------------~d   76 (119)
T cd02952          20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---YW------------------RD   76 (119)
T ss_pred             CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---cc------------------cC
Confidence            5789999999 7       9999999999999999999873 5888888887532   22                  23


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVL  197 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I  197 (299)
                      ++.++.+.|++. .    ..|+.++++..+++
T Consensus        77 ~~~~~~~~~~I~-~----~iPT~~~~~~~~~l  103 (119)
T cd02952          77 PNNPFRTDPKLT-T----GVPTLLRWKTPQRL  103 (119)
T ss_pred             cchhhHhccCcc-c----CCCEEEEEcCCcee
Confidence            345777788874 1    36898888544433

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.37  E-value=2.7e-06  Score=66.38  Aligned_cols=72  Identities=6%  Similarity=-0.014  Sum_probs=52.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH-
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS-  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~-  171 (299)
                      .++++||.|| ++||++|+...|.+.++.+++++ .+.+..|..|..                            ..++ 
T Consensus        28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~----------------------------~~l~~   77 (113)
T cd03006          28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP----------------------------QGKCR   77 (113)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC----------------------------hHHHH
Confidence            4468888888 99999999999999999999975 366666655432                            2344 


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +.|++.      ..|+..++ ++|+....+
T Consensus        78 ~~~~I~------~~PTl~lf-~~g~~~~~y  100 (113)
T cd03006          78 KQKHFF------YFPVIHLY-YRSRGPIEY  100 (113)
T ss_pred             HhcCCc------ccCEEEEE-ECCccceEE
Confidence            467764      46888888 688865444

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.36  E-value=2.2e-06  Score=67.81  Aligned_cols=93  Identities=10%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             eEEcCcc-----CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce
Q psy16151         86 EIKLSDY-----YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  160 (299)
Q Consensus        86 ~v~Lsd~-----~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                      .++..++     .|+.++|+|+ ++|||+|+...|.|.++.++   .++.++-|.+|.....    +             
T Consensus        10 ~it~~~~~~~i~~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~----~-------------   68 (122)
T TIGR01295        10 VTTVVRALEALDKKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSF----E-------------   68 (122)
T ss_pred             ecCHHHHHHHHHcCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCc----C-------------
Confidence            4454554     3667888888 99999999999999999887   3577999988742100    0             


Q ss_pred             eeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        161 PLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       161 p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                        +.+.  -.++.+.|++....  ...|+.+++ ++|+.+....+.
T Consensus        69 --~~~~~~~~~~~~~~~i~~~i--~~~PT~v~~-k~Gk~v~~~~G~  109 (122)
T TIGR01295        69 --MSSLNDLTAFRSRFGIPTSF--MGTPTFVHI-TDGKQVSVRCGS  109 (122)
T ss_pred             --cccHHHHHHHHHHcCCcccC--CCCCEEEEE-eCCeEEEEEeCC
Confidence              0000  02344444432110  135888888 799999887543

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.36  E-value=2.4e-06  Score=64.75  Aligned_cols=74  Identities=14%  Similarity=0.185  Sum_probs=55.3

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +++++|.|| +.||+.|+...|.+.++.++++. .++.++.+..+.+                           ...+++
T Consensus        18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~   69 (105)
T cd02998          18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAK   69 (105)
T ss_pred             CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHH
Confidence            568999999 99999999999999999999873 3455655554331                           236677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .|++.      ..|+.+++++.|+....+
T Consensus        70 ~~~i~------~~P~~~~~~~~~~~~~~~   92 (105)
T cd02998          70 KYGVS------GFPTLKFFPKGSTEPVKY   92 (105)
T ss_pred             hCCCC------CcCEEEEEeCCCCCcccc
Confidence            88885      568999998777655443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.35  E-value=6.2e-06  Score=66.71  Aligned_cols=93  Identities=12%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|||.|| ++||++|+...|.|.++.+++++ -+.|+-|.+|.                            ..+++.
T Consensus        22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe----------------------------~~dla~   71 (142)
T PLN00410         22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKN-FAVIYLVDITE----------------------------VPDFNT   71 (142)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            4679999999 99999999999999999998864 25566666653                            346677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCc-EEEEEeccCC----CCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGV-LRQITMNDLP----VGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~-I~~~~~~~~~----~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++=++|. .+....+...    .-...+++.+.++.+
T Consensus        72 ~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         72 MYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             HcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence            78875      2355553447888 5555433211    123455666665544

>TIGR01068 thioredoxin thioredoxin

Probab=98.34  E-value=5.8e-06  Score=62.04  Aligned_cols=85  Identities=16%  Similarity=0.298  Sum_probs=61.1

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|..+.                            +..+.++
T Consensus        14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~   63 (101)
T TIGR01068        14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAK   63 (101)
T ss_pred             CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHH
Confidence            468999998 99999999999999999888863 57777776542                            2345667


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      |++.      ..|+.+++ ++|++.....+.    .+.+++.+.++
T Consensus        64 ~~v~------~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~   98 (101)
T TIGR01068        64 YGIR------SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLIN   98 (101)
T ss_pred             cCCC------cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHH
Confidence            8875      56899999 688887665322    23455555554

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.32  E-value=9.1e-06  Score=61.26  Aligned_cols=85  Identities=16%  Similarity=0.355  Sum_probs=64.6

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      ++++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+.                            ...+++.
T Consensus        17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~   66 (103)
T PF00085_consen   17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCKK   66 (103)
T ss_dssp             SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHHH
T ss_pred             CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhhc
Confidence            578999998 89999999999999999999987 77777766542                            2457778


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      |++.      ..|+.+++ ++|+....+.+.    ...+.+.+.|+
T Consensus        67 ~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~  101 (103)
T PF00085_consen   67 YGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIE  101 (103)
T ss_dssp             TTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHH
T ss_pred             cCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHH
Confidence            8885      46888888 578777665322    35677776665

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.31  E-value=5.5e-06  Score=72.34  Aligned_cols=96  Identities=11%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|.|| +.||++|+...|.+.++++++++ .+.+..|..+                            .+..+++.
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~  101 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKR  101 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHH
Confidence            578999999 99999999999999999998874 2333333221                            23467888


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCCCCcc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI  230 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~g~~v  230 (299)
                      |++.      ..|++++++ +|+++....    .....+++.+.+.+.-....+.++
T Consensus       102 ~~I~------~~PTl~~f~-~G~~v~~~~----G~~s~e~L~~fi~~~~~~~~~~~~  147 (224)
T PTZ00443        102 FAIK------GYPTLLLFD-KGKMYQYEG----GDRSTEKLAAFALGDFKKALGAPV  147 (224)
T ss_pred             cCCC------cCCEEEEEE-CCEEEEeeC----CCCCHHHHHHHHHHHHHhhcCCCC
Confidence            9986      568999997 788765431    124566666666554333333443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.31  E-value=3.5e-06  Score=74.75  Aligned_cols=85  Identities=16%  Similarity=0.260  Sum_probs=63.8

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      .+.++..++-|++|+. +-||.|....|.++.+.+++   |+.|++||+|...                ...||..- ++
T Consensus       144 ~i~~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~-~d  202 (256)
T TIGR02739       144 AIQQLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSR-SD  202 (256)
T ss_pred             HHHHHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCcc-CC
Confidence            4456677899999995 45999999999999998876   7999999999641                11233322 25


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEE
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ  199 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~  199 (299)
                      ...++.+|+.      ..|++||++++.+...
T Consensus       203 ~gqa~~l~v~------~~Pal~Lv~~~t~~~~  228 (256)
T TIGR02739       203 SGQAQHLGVK------YFPALYLVNPKSQKMS  228 (256)
T ss_pred             hHHHHhcCCc------cCceEEEEECCCCcEE
Confidence            6678899986      4699999999954433

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.30  E-value=4.2e-06  Score=62.37  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+.                            +..+.
T Consensus        14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~   64 (101)
T cd02961          14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLC   64 (101)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHH
Confidence            4458999998 8999999999999999988885 3355555554332                            34667


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +.|++.      ..|+.++++++|+....+
T Consensus        65 ~~~~i~------~~Pt~~~~~~~~~~~~~~   88 (101)
T cd02961          65 SEYGVR------GYPTIKLFPNGSKEPVKY   88 (101)
T ss_pred             HhCCCC------CCCEEEEEcCCCcccccC
Confidence            778885      568999998887544443

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.29  E-value=1.1e-05  Score=63.86  Aligned_cols=100  Identities=7%  Similarity=-0.129  Sum_probs=57.6

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHH-H--HHHHHHHhhcCcEEEEEeCCCHHhHH-HHhhcccccCCCCccceeeeecCc
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHL-AWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~gv~vi~Vs~d~~~~~~-~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      -.+|+|+|+|+ ++||+.|+..-.. +  .++.+.+. +++.+|-|..+...+.. .+.+                    
T Consensus        13 ~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------------   70 (124)
T cd02955          13 REDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------------   70 (124)
T ss_pred             HcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH--------------------
Confidence            36789999987 9999999866542 2  23444443 24555544443211111 1110                    


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC----CCCCCHHHHHHHHhh
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL----PVGRSVDETLRLVQA  220 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~----~~g~~~~evl~~l~~  220 (299)
                       .....||+.      ..|+++++|++|++++...+-.    ..+....++++.++.
T Consensus        71 -~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd02955          71 -AAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE  120 (124)
T ss_pred             -HHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence             111234553      4689999999999998874321    123356666666654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=98.27  E-value=5.6e-06  Score=64.59  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC---------------
Q psy16151        117 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---------------  181 (299)
Q Consensus       117 l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~---------------  181 (299)
                      |.+..+++++.|+.+++|+.++.+..++|.+..       .+++|++.|++.++.+++|+.....               
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~   74 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI   74 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence            567788898999999999999997799999775       8999999999999999999874210               


Q ss_pred             ---------------C--CceeEEEEEeCCCcEEEEEe
Q psy16151        182 ---------------G--HTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       182 ---------------g--~~~p~~~lID~dG~I~~~~~  202 (299)
                                     |  .....+||+|++|+|++.|.
T Consensus        75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr  112 (115)
T PF13911_consen   75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR  112 (115)
T ss_pred             HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence                           0  11246899999999999985

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.27  E-value=8.3e-06  Score=63.57  Aligned_cols=85  Identities=16%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      ++.++++|| +.||++|....|.+.++.+++  ..+.+.-|..|.                            ..+++++
T Consensus        22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~----------------------------~~~l~~~   70 (113)
T cd02975          22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE----------------------------DKEKAEK   70 (113)
T ss_pred             CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc----------------------------CHHHHHH
Confidence            345666666 999999999999999988775  246666665542                            2357778


Q ss_pred             hCCcccCCCCceeEEEEEeCC---CcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRN---GVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~d---G~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      |++.      ..|+.++.+..   |.++..   +...+..+.++++.+
T Consensus        71 ~~v~------~vPt~~i~~~g~~~~~~~~~---G~~~~~el~~~i~~i  109 (113)
T cd02975          71 YGVE------RVPTTIFLQDGGKDGGIRYY---GLPAGYEFASLIEDI  109 (113)
T ss_pred             cCCC------cCCEEEEEeCCeecceEEEE---ecCchHHHHHHHHHH
Confidence            8986      56898888653   344322   333343444444443

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.24  E-value=8.1e-06  Score=63.73  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-C-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      +++++|.|| ++||++|....|.+.++.+++++. + +.+..|..+.                          |....++
T Consensus        19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~   71 (114)
T cd02992          19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALC   71 (114)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHH
Confidence            368999999 999999999999999999988642 2 3343333221                          1234667


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCC
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNG  195 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG  195 (299)
                      +.|++.      ..|+.+++.+..
T Consensus        72 ~~~~i~------~~Pt~~lf~~~~   89 (114)
T cd02992          72 RDFGVT------GYPTLRYFPPFS   89 (114)
T ss_pred             HhCCCC------CCCEEEEECCCC
Confidence            788885      468999995444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.6e-06  Score=75.06  Aligned_cols=74  Identities=9%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +-+|||++|| +.||++|..-+|.|.++..+++. .+.+.-|++                            |.+..++.
T Consensus        42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~----------------------------D~~p~vAa   91 (304)
T COG3118          42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNC----------------------------DAEPMVAA   91 (304)
T ss_pred             cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecC----------------------------CcchhHHH
Confidence            5579999999 99999999999999999999875 344444443                            33567888


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +|||.      .+|++|++ +||+-+.-+.+
T Consensus        92 qfgiq------sIPtV~af-~dGqpVdgF~G  115 (304)
T COG3118          92 QFGVQ------SIPTVYAF-KDGQPVDGFQG  115 (304)
T ss_pred             HhCcC------cCCeEEEe-eCCcCccccCC
Confidence            99996      78999999 89999877743

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.22  E-value=1.1e-05  Score=62.56  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CCCeEEEEEEeCCC--CCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~--cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .|.++||.|| +.|  ||.|....|.|.++.+++.+ .+.++-|..|+                            +.++
T Consensus        26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~----------------------------~~~l   75 (111)
T cd02965          26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRAD----------------------------EQAL   75 (111)
T ss_pred             CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCC----------------------------CHHH
Confidence            5667888888 776  99999999999999998874 24444444432                            3578


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +..|+|.      ..|+.+++ ++|+++....+
T Consensus        76 a~~f~V~------sIPTli~f-kdGk~v~~~~G  101 (111)
T cd02965          76 AARFGVL------RTPALLFF-RDGRYVGVLAG  101 (111)
T ss_pred             HHHcCCC------cCCEEEEE-ECCEEEEEEeC
Confidence            8889986      57888888 79999988743

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.22  E-value=5.6e-06  Score=82.04  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      +..+||+|+|+|| ++||++|+..-+..   .++.++++  ++.++-|.+++.+                        +.
T Consensus       470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~  522 (571)
T PRK00293        470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AE  522 (571)
T ss_pred             HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hh
Confidence            3346899999999 99999999776553   45555554  5666666654321                        11


Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCcEEE--EEeccCCCCCCHHHHHHHHhhc
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ--ITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~--~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.++.++|++.      ..|+++++|+||+++.  +..+    ..+.+++.+.++.+
T Consensus       523 ~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G----~~~~~~f~~~L~~~  569 (571)
T PRK00293        523 DVALLKHYNVL------GLPTILFFDAQGQEIPDARVTG----FMDAAAFAAHLRQL  569 (571)
T ss_pred             hHHHHHHcCCC------CCCEEEEECCCCCCcccccccC----CCCHHHHHHHHHHh
Confidence            35677888886      4689999999999853  3312    23567777777764

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.20  E-value=1.1e-05  Score=62.81  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      ++++||.|| +.||++|....|.+.++.+++.  ++.++-|..+.                            . .+++.
T Consensus        24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~   71 (113)
T cd02957          24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNY   71 (113)
T ss_pred             CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHh
Confidence            478999998 9999999999999999998875  45444443321                            1 45667


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      |++.      ..|+.+++ ++|+++....+
T Consensus        72 ~~i~------~~Pt~~~f-~~G~~v~~~~G   94 (113)
T cd02957          72 LDIK------VLPTLLVY-KNGELIDNIVG   94 (113)
T ss_pred             cCCC------cCCEEEEE-ECCEEEEEEec
Confidence            7775      56887777 78999988764

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.19  E-value=2.4e-05  Score=60.94  Aligned_cols=74  Identities=12%  Similarity=0.144  Sum_probs=56.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|+|.|| +.||++|....|.|.++.+++.  ++.++-|..|.                            ...+++
T Consensus        21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------~~~l~~   69 (113)
T cd02989          21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------APFLVE   69 (113)
T ss_pred             CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------CHHHHH
Confidence            3568999998 9999999999999999988875  45565554432                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      +|++.      ..|+.+++ ++|+++.+..+.
T Consensus        70 ~~~v~------~vPt~l~f-k~G~~v~~~~g~   94 (113)
T cd02989          70 KLNIK------VLPTVILF-KNGKTVDRIVGF   94 (113)
T ss_pred             HCCCc------cCCEEEEE-ECCEEEEEEECc
Confidence            88886      56888888 689998877543

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.17  E-value=2.1e-05  Score=59.47  Aligned_cols=84  Identities=14%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|.|| +.||++|+...|.+.++.+++.. .+.++.+..+.                            +..+++.
T Consensus        18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~   67 (103)
T cd03001          18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ   67 (103)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence            456899998 99999999999999999988764 45666554432                            3456778


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      |++.      ..|+.++++ +|+.....+.   .+.+.+++.+.
T Consensus        68 ~~i~------~~P~~~~~~-~~~~~~~~~~---g~~~~~~l~~~  101 (103)
T cd03001          68 YGVR------GFPTIKVFG-AGKNSPQDYQ---GGRTAKAIVSA  101 (103)
T ss_pred             CCCC------ccCEEEEEC-CCCcceeecC---CCCCHHHHHHH
Confidence            8885      468999996 4433322211   23455555443

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.15  E-value=1.4e-05  Score=69.56  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=65.8

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      -.+.++.+++-|++|+ .+.|+.|....|.|..+.+++   |+.|+.||+|...                ...||-... 
T Consensus       113 ~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~~-  171 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPRP-  171 (215)
T ss_pred             HHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCCC-
Confidence            3456667889999998 456999999999999998887   8999999999632                112222211 


Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +..+++.+|+.      ..|++||+++++......
T Consensus       172 ~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv  200 (215)
T PF13728_consen  172 DPGQAKRLGVK------VTPALFLVNPNTKKWYPV  200 (215)
T ss_pred             CHHHHHHcCCC------cCCEEEEEECCCCeEEEE
Confidence            56788899995      579999999998444443

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.15  E-value=2.5e-05  Score=61.55  Aligned_cols=85  Identities=4%  Similarity=0.004  Sum_probs=57.3

Q ss_pred             eEEEEEEeCCCCCC--ch--hhHHHHHHHHHHH-hhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         96 YLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        96 ~vlL~F~~~~~cp~--C~--~~~~~l~~l~~~~-~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ++|++|| ++||++  |+  ...|.+.++..++ ++.++.+.-|.+|.                            +.++
T Consensus        29 ~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~~~L   79 (120)
T cd03065          29 LCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------DAKV   79 (120)
T ss_pred             eEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------CHHH
Confidence            5566665 899987  99  6677777777776 34466666665542                            4578


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++.|||.      ..|+.+++ +||+++. + .+.   ...+.+...++.+
T Consensus        80 a~~~~I~------~iPTl~lf-k~G~~v~-~-~G~---~~~~~l~~~l~~~  118 (120)
T cd03065          80 AKKLGLD------EEDSIYVF-KDDEVIE-Y-DGE---FAADTLVEFLLDL  118 (120)
T ss_pred             HHHcCCc------cccEEEEE-ECCEEEE-e-eCC---CCHHHHHHHHHHH
Confidence            8889996      57899888 6999775 3 222   2456666666543

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.14  E-value=1.2e-05  Score=71.04  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      ++++..++-|++|+.+ -||.|....|.|+.+.+++   |+.|++||+|..-                ...||.. -++.
T Consensus       138 i~~la~~~GL~fFy~s-~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~-~~d~  196 (248)
T PRK13703        138 IAKLAEHYGLMFFYRG-QDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDS-RTDQ  196 (248)
T ss_pred             HHHHHhcceEEEEECC-CCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCC-ccCh
Confidence            5566778999999955 5999999999999998876   7999999999641                1123332 1244


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCC-cEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNG-VLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG-~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      ..++.+|+.      ..|++||++++. ++.-+..+.+    ..+++.+-+.
T Consensus       197 gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~  238 (248)
T PRK13703        197 GQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFI----TQDDLAKRFL  238 (248)
T ss_pred             hHHHhcCCc------ccceEEEEECCCCcEEEEeeccC----CHHHHHHHHH
Confidence            566889985      469999999996 5554443332    3445544443

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.12  E-value=2e-05  Score=75.68  Aligned_cols=93  Identities=12%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +++++||+|| +.||++|....|.|.++.+++++.++.++.|.+|...                          .....+
T Consensus       370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--------------------------~~~~~~  422 (463)
T TIGR00424       370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--------------------------KEFAKQ  422 (463)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--------------------------cHHHHH
Confidence            6788999999 9999999999999999999998777888888777421                          011234


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|+|.      ..|+.+++. +|....+.+.  ...++.+.++..++.|
T Consensus       423 ~~~I~------~~PTii~Fk-~g~~~~~~Y~--~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       423 ELQLG------SFPTILFFP-KHSSRPIKYP--SEKRDVDSLMSFVNLL  462 (463)
T ss_pred             HcCCC------ccceEEEEE-CCCCCceeCC--CCCCCHHHHHHHHHhh
Confidence            56775      468988885 4442222211  1346788888888765

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.08  E-value=4.8e-05  Score=55.38  Aligned_cols=70  Identities=20%  Similarity=0.318  Sum_probs=52.1

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  174 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~  174 (299)
                      ++++|+|| +.||+.|....+.+.++.++  ..++.++.++.+.                            ...+.+.|
T Consensus        11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~   59 (93)
T cd02947          11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY   59 (93)
T ss_pred             CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence            67888888 89999999999999998877  4467777776553                            23456667


Q ss_pred             CCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        175 GVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       175 gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      ++.      ..|+.+++ ++|+++..+.
T Consensus        60 ~v~------~~P~~~~~-~~g~~~~~~~   80 (93)
T cd02947          60 GVR------SIPTFLFF-KNGKEVDRVV   80 (93)
T ss_pred             Ccc------cccEEEEE-ECCEEEEEEe
Confidence            775      45788877 5777776663

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PLN02309 5'-adenylylsulfate reductase

Probab=97.97  E-value=6.1e-05  Score=72.30  Aligned_cols=92  Identities=14%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +++++||+|| +.||++|....|.+.++.+++...++.++.|+.|..                           +..+++
T Consensus       364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---------------------------~~~la~  415 (457)
T PLN02309        364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---------------------------QKEFAK  415 (457)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------chHHHH
Confidence            5788999998 999999999999999999999877788888877621                           112332


Q ss_pred             -HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 -DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 -~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       .|+|.      ..|+.+++.+... ..+.+.  ...++.+.++..++++
T Consensus       416 ~~~~I~------~~PTil~f~~g~~-~~v~Y~--~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        416 QELQLG------SFPTILLFPKNSS-RPIKYP--SEKRDVDSLLSFVNSL  456 (457)
T ss_pred             hhCCCc------eeeEEEEEeCCCC-CeeecC--CCCcCHHHHHHHHHHh
Confidence             46764      5688888854332 222211  1246788888888765

>PTZ00062 glutaredoxin; Provisional

Probab=97.95  E-value=8.6e-05  Score=63.87  Aligned_cols=113  Identities=12%  Similarity=0.090  Sum_probs=73.2

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhC
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG  175 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~g  175 (299)
                      .+|++|| ++|||.|....+.|.++.++|.  .+.++-|..|                                    |+
T Consensus        19 ~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~~   59 (204)
T PTZ00062         19 KLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------DA   59 (204)
T ss_pred             cEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------cC
Confidence            4777777 9999999999999999999885  3555555322                                    66


Q ss_pred             CcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCCCC-------------ccccccceecc--c
Q psy16151        176 VYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTG-------------AINGLSLLVIG--L  240 (299)
Q Consensus       176 v~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~g~-------------~vn~ast~~~~--~  240 (299)
                      |.      ..|+.+++ ++|+++.+..     |.+..++...+..+.....+.             +|=.-+.|.+-  .
T Consensus        60 V~------~vPtfv~~-~~g~~i~r~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~  127 (204)
T PTZ00062         60 NN------EYGVFEFY-QNSQLINSLE-----GCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPF  127 (204)
T ss_pred             cc------cceEEEEE-ECCEEEeeee-----CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCC
Confidence            64      56888888 6999988873     345666666666554432211             11111343321  2


Q ss_pred             eechHHHHHHHhhcCceEE
Q psy16151        241 FQVTEKTCDILEDHGVTCE  259 (299)
Q Consensus       241 i~~s~~~~~~L~~~~~~~~  259 (299)
                      ..-+..+.++|..+++..+
T Consensus       128 C~~C~~~k~~L~~~~i~y~  146 (204)
T PTZ00062        128 CRFSNAVVNMLNSSGVKYE  146 (204)
T ss_pred             ChhHHHHHHHHHHcCCCEE
Confidence            2335667888888775544

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.86  E-value=0.00023  Score=51.38  Aligned_cols=38  Identities=18%  Similarity=0.185  Sum_probs=29.7

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      |..|| +.||++|....+.|.++.++++. .+.++-|..+
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~   40 (82)
T TIGR00411         3 IELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM   40 (82)
T ss_pred             EEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence            45566 99999999999999999988864 3666666553

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.85  E-value=7.2e-05  Score=62.94  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=54.1

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++|||+|| +.||++|....|.|.++.+++.  ++.++-|.++..                             .++..
T Consensus        83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-----------------------------~l~~~  130 (175)
T cd02987          83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-----------------------------GASDE  130 (175)
T ss_pred             CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-----------------------------hhHHh
Confidence            358999998 9999999999999999998885  466666655421                             34455


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      |++.      ..|+.+|+ ++|+++....+.
T Consensus       131 f~v~------~vPTllly-k~G~~v~~~vG~  154 (175)
T cd02987         131 FDTD------ALPALLVY-KGGELIGNFVRV  154 (175)
T ss_pred             CCCC------CCCEEEEE-ECCEEEEEEech
Confidence            6664      46888888 799999877643

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.83  E-value=0.00026  Score=57.72  Aligned_cols=142  Identities=10%  Similarity=0.086  Sum_probs=83.7

Q ss_pred             CCCCCCCCcEEeee-------eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHH-HhhcCcEEEEE-eC
Q psy16151         66 LVSKPAPFWQGTAV-------VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVAA-SV  136 (299)
Q Consensus        66 ~~G~~aPdF~L~~~-------~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~-~~~~gv~vi~V-s~  136 (299)
                      ..|+++|..++.+-       .+.+.++.+.+++.||+-||....+. ...-....|-+..+.+. |.....+..+| +.
T Consensus         2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~   80 (160)
T PF09695_consen    2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL   80 (160)
T ss_pred             cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence            46888888776531       01123556667789996666665333 33333334444444444 55555666555 55


Q ss_pred             CC-----HHhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCC
Q psy16151        137 DS-----HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRS  210 (299)
Q Consensus       137 d~-----~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~  210 (299)
                      |+     ..-.+..++..++     .++|. ++.|.++.+.++|++...     .-+.+|+|++|+|++...+.. ...+
T Consensus        81 dDAi~gt~~fVrss~e~~kk-----~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~L-s~~E  149 (160)
T PF09695_consen   81 DDAIWGTGGFVRSSAEDSKK-----EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGAL-SPAE  149 (160)
T ss_pred             ccccccchHHHHHHHHHhhh-----hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCC-CHHH
Confidence            54     1112333333211     45665 579999999999999632     246889999999999984443 3334


Q ss_pred             HHHHHHHHh
Q psy16151        211 VDETLRLVQ  219 (299)
Q Consensus       211 ~~evl~~l~  219 (299)
                      ..++++.++
T Consensus       150 v~qVi~Ll~  158 (160)
T PF09695_consen  150 VQQVIALLK  158 (160)
T ss_pred             HHHHHHHHh
Confidence            555655554

>PTZ00102 disulphide isomerase; Provisional

Probab=97.82  E-value=0.00014  Score=70.40  Aligned_cols=92  Identities=10%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      .||.|+|+|| +.||++|+...|.+.++.+.+++.+ +.+.-+..+..                            ...+
T Consensus       374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~----------------------------~~~~  424 (477)
T PTZ00102        374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN----------------------------ETPL  424 (477)
T ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC----------------------------ccch
Confidence            5789999999 9999999999999999998887643 44444443321                            1234


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +.|++.      ..|+.+++++++++...+.+    ....+.+.+.+.....
T Consensus       425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        425 EEFSWS------AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHAT  466 (477)
T ss_pred             hcCCCc------ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcCC
Confidence            456664      46899999988876444422    3467788888777654

>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4

Probab=97.81  E-value=1.5e-05  Score=67.10  Aligned_cols=53  Identities=34%  Similarity=0.401  Sum_probs=44.5

Q ss_pred             CCccccc----cceeccceechHHHHHHHh-hcCceEEecceeeecccceeEEEEEEc
Q psy16151        227 TGAINGL----SLLVIGLFQVTEKTCDILE-DHGVTCELRGRTFIKGKGLITTYFIRQ  279 (299)
Q Consensus       227 g~~vn~a----st~~~~~i~~s~~~~~~L~-~~~~~~~~rg~~~~k~~~~~~t~~~~~  279 (299)
                      |++||.|    +...++.+.+|+++++.|. ...|.++.+|.+.+|||+.+.||||.|
T Consensus       127 G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~  184 (184)
T PF00211_consen  127 GDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG  184 (184)
T ss_dssp             SHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred             ehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence            4555555    4456788999999999998 567999999999999999999999985

6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....

>PTZ00102 disulphide isomerase; Provisional

Probab=97.76  E-value=0.00018  Score=69.64  Aligned_cols=92  Identities=15%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +++.++|.|| +.||++|....|.+.++.+.+++.+..+....+|                          ++.+..+++
T Consensus        48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd--------------------------~~~~~~l~~  100 (477)
T PTZ00102         48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD--------------------------ATEEMELAQ  100 (477)
T ss_pred             cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEE--------------------------CCCCHHHHH
Confidence            4678888888 9999999999999999988886544333333333                          122456888


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +|++.      ..|+.++++..+.+  .+ .   ..++.+.+.+.+..+..
T Consensus       101 ~~~i~------~~Pt~~~~~~g~~~--~y-~---g~~~~~~l~~~l~~~~~  139 (477)
T PTZ00102        101 EFGVR------GYPTIKFFNKGNPV--NY-S---GGRTADGIVSWIKKLTG  139 (477)
T ss_pred             hcCCC------cccEEEEEECCceE--Ee-c---CCCCHHHHHHHHHHhhC
Confidence            89985      56899999755444  32 2   23467788888777643

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.71  E-value=0.00029  Score=61.21  Aligned_cols=91  Identities=12%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             cCCCeEEEEEEe--CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         92 YYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        92 ~~Gk~vlL~F~~--~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .++...++.|+.  +.||++|....|.+.++.+++.  ++++..+.+|..                          ...+
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~--------------------------~~~~   68 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTP--------------------------EDKE   68 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCc--------------------------ccHH
Confidence            344445656663  3999999999999999988884  455655655532                          2457


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHH
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l  218 (299)
                      +++.|++.      ..|+.++++ +|+.+. ++.+ ......+..+++.+
T Consensus        69 l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G-~~~~~~l~~~i~~~  110 (215)
T TIGR02187        69 EAEKYGVE------RVPTTIILE-EGKDGGIRYTG-IPAGYEFAALIEDI  110 (215)
T ss_pred             HHHHcCCC------ccCEEEEEe-CCeeeEEEEee-cCCHHHHHHHHHHH
Confidence            88899986      568888885 677764 4433 33333344444444

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.71  E-value=0.00024  Score=68.18  Aligned_cols=90  Identities=16%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ++++++|.|| +.||++|....|.+.++++.+++.+  +.+..|..+                            .+.++
T Consensus        17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l   67 (462)
T TIGR01130        17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT----------------------------EEKDL   67 (462)
T ss_pred             cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC----------------------------CcHHH
Confidence            4678888888 9999999999999999999888665  444444332                            23467


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.|++.      ..|+.+++ ++|+. +..+.+    ..+.+.+.+.+....
T Consensus        68 ~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g----~~~~~~l~~~i~~~~  109 (462)
T TIGR01130        68 AQKYGVS------GYPTLKIF-RNGEDSVSDYNG----PRDADGIVKYMKKQS  109 (462)
T ss_pred             HHhCCCc------cccEEEEE-eCCccceeEecC----CCCHHHHHHHHHHhc
Confidence            7888886      46887777 57776 444422    235667777766554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.67  E-value=0.00026  Score=60.50  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++|||.|| +.||++|....|.|.++..+|.  .+.++-|.++..                               ...
T Consensus       102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~-------------------------------~~~  147 (192)
T cd02988         102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC-------------------------------IPN  147 (192)
T ss_pred             CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------Hhh
Confidence            458999998 9999999999999999999985  467766655410                               124


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      |++.      ..|+.+++ ++|+++....+.
T Consensus       148 ~~i~------~lPTlliy-k~G~~v~~ivG~  171 (192)
T cd02988         148 YPDK------NLPTILVY-RNGDIVKQFIGL  171 (192)
T ss_pred             CCCC------CCCEEEEE-ECCEEEEEEeCc
Confidence            5553      46888888 799999888654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.67  E-value=9.1e-05  Score=55.93  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=34.5

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCC
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD  137 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d  137 (299)
                      +++++|+|| ++||++|....|.+.++.+.+++ ..+.+..|..+
T Consensus        18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995          18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            578899998 99999999999999999998876 34555555443

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.63  E-value=0.00053  Score=53.26  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      -++|+++|+|+ +.||+.|.......   .++.+.+.+ .+..+.+.++++                          ...
T Consensus        15 ~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~--------------------------e~~   66 (114)
T cd02958          15 SEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS--------------------------EGQ   66 (114)
T ss_pred             hhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc--------------------------cHH
Confidence            35789999998 99999997654321   112222221 233333332221                          123


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeC-CCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDR-NGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~-dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++..|++.      ..|+.++||+ +|+++.+..+..    ..++++..++.
T Consensus        67 ~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~----~~~~f~~~L~~  109 (114)
T cd02958          67 RFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNI----TPEDLLSQLIE  109 (114)
T ss_pred             HHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCC----CHHHHHHHHHH
Confidence            566777765      4699999999 899998874332    45667666654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=97.62  E-value=0.00041  Score=61.66  Aligned_cols=141  Identities=15%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             CCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hc--CcEEEEEeCCCHHhHH
Q psy16151         68 SKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QI--NTEVVAASVDSHFTHL  143 (299)
Q Consensus        68 G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~--gv~vi~Vs~d~~~~~~  143 (299)
                      .-.+|+|...++   +|+.+++.+ ++||+.||..+...|...|....-.  ...++|. ..  .++++-|++-..- .+
T Consensus        98 AlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k  171 (252)
T PF05176_consen   98 ALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LK  171 (252)
T ss_pred             CCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HH
Confidence            456799998755   667777776 4899776666657776656544322  2333443 33  6889999876532 22


Q ss_pred             HHhhcc-----cccCCCCc-cceeeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        144 AWVNTP-----RKEGGLGK-LKIPLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       144 ~~~~~~-----~~~~~~~~-~~~p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      .|+-..     ++.-.... -.|-++.+.  ...+-+.+|+.+..    ...+||||++|+||+..- +.......+.+.
T Consensus       172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWags-G~At~~E~~~L~  246 (252)
T PF05176_consen  172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGS-GPATPEELESLW  246 (252)
T ss_pred             HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCcc-CCCCHHHHHHHH
Confidence            333221     11111011 223333333  46888999998664    457899999999999973 333333444444


Q ss_pred             HHHh
Q psy16151        216 RLVQ  219 (299)
Q Consensus       216 ~~l~  219 (299)
                      +.++
T Consensus       247 k~~~  250 (252)
T PF05176_consen  247 KCVK  250 (252)
T ss_pred             HHHh
Confidence            4443

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=97.56  E-value=0.00025  Score=61.38  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCc---EEEEEeCCCHHhHH--
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT---EVVAASVDSHFTHL--  143 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv---~vi~Vs~d~~~~~~--  143 (299)
                      .++|.+++.       ..-.+.+.+|+++||-+-.+ +|..|..++..|..+..+|...|+   .++.|+--+..+..  
T Consensus         8 ~~~p~W~i~-------~~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~   79 (238)
T PF04592_consen    8 KPPPPWKIG-------GQDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY   79 (238)
T ss_pred             CCCCCceEC-------CchHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence            567888853       23467888999988888855 699999999999999999998764   56666643322222  


Q ss_pred             -HHhhcccccCCCCccceeeee-c-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        144 -AWVNTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       144 -~~~~~~~~~~~~~~~~~p~l~-D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                       ...+..       ...||+.- | .+.++...++-..       --+||+|+-|++.+...
T Consensus        80 ~~l~~r~-------~~~ipVyqq~~~q~dvW~~L~G~k-------dD~~iyDRCGrL~~~i~  127 (238)
T PF04592_consen   80 WELKRRV-------SEHIPVYQQDENQPDVWELLNGSK-------DDFLIYDRCGRLTYHIP  127 (238)
T ss_pred             HHHHHhC-------CCCCceecCCccccCHHHHhCCCc-------CcEEEEeccCcEEEEec
Confidence             111211       34588885 3 4578998888643       35899999999998864

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.53  E-value=0.00056  Score=45.35  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      |+.|| ..||+.|....+.+.++  +....++.++.++.+......
T Consensus         1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   43 (69)
T cd01659           1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALE   43 (69)
T ss_pred             CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHh
Confidence            35666 88999999999999998  555668999999988755433

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.49  E-value=0.0004  Score=55.33  Aligned_cols=23  Identities=17%  Similarity=-0.073  Sum_probs=19.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILA  116 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~  116 (299)
                      .+|+|+|+|+ +.||++|...-..
T Consensus        22 ~~Kpvmv~f~-sdwC~~Ck~l~k~   44 (130)
T cd02960          22 SNKPLMVIHH-LEDCPHSQALKKA   44 (130)
T ss_pred             CCCeEEEEEe-CCcCHhHHHHHHH
Confidence            6899999987 9999999876544

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.47  E-value=0.00029  Score=52.96  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=41.8

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .....++++++++.|| +.||+.|....|.+.++.+++.. .+.++.+...
T Consensus        25 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            4455555889999999 99999999999999999999876 6788888875

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.47  E-value=0.00086  Score=48.26  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=26.7

Q ss_pred             EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      |.|| ++|||+|....|.+.++.+++.   +.+-.+.+|
T Consensus         3 i~~~-a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~   37 (76)
T TIGR00412         3 IQIY-GTGCANCQMTEKNVKKAVEELG---IDAEFEKVT   37 (76)
T ss_pred             EEEE-CCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeC
Confidence            6777 7999999999999999988775   233334444

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>KOG4498|consensus

Probab=97.47  E-value=0.0013  Score=55.00  Aligned_cols=131  Identities=12%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             CCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccc
Q psy16151         81 DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK  159 (299)
Q Consensus        81 ~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~  159 (299)
                      +..|+.+...++ +.+..+|.|.+-.-|-.|+.+...|.++.+-++..|+..++|..........+.+.-       .+.
T Consensus        36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~  108 (197)
T KOG4498|consen   36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS  108 (197)
T ss_pred             hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence            457899999997 556789999989999999999999999988888899999999764433333333321       222


Q ss_pred             eeeeecCchHHHHHhCCcc----------------------c--CC--CCceeEEEEEeCCCcEEEEEeccCC-CCCCHH
Q psy16151        160 IPLLSDLTHKISLDYGVYL----------------------S--DQ--GHTLRGLFIIDRNGVLRQITMNDLP-VGRSVD  212 (299)
Q Consensus       160 ~p~l~D~~~~~~~~~gv~~----------------------~--~~--g~~~p~~~lID~dG~I~~~~~~~~~-~g~~~~  212 (299)
                      -.+..|++..+.+.++...                      .  .+  +......+++.+.++|.+.+..... ...+.+
T Consensus       109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~  188 (197)
T KOG4498|consen  109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPID  188 (197)
T ss_pred             eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHH
Confidence            2555566544433333211                      1  11  1234568999888899999874432 233677


Q ss_pred             HHHHHH
Q psy16151        213 ETLRLV  218 (299)
Q Consensus       213 evl~~l  218 (299)
                      .+++.+
T Consensus       189 ~Vl~v~  194 (197)
T KOG4498|consen  189 SVLQVV  194 (197)
T ss_pred             HHHHHh
Confidence            777665

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.0028  Score=54.19  Aligned_cols=140  Identities=14%  Similarity=0.184  Sum_probs=96.1

Q ss_pred             CCceEEcCcc-CCCeE-EEE-EEe----CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCC
Q psy16151         83 QLKEIKLSDY-YGKYL-VFF-FYP----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL  155 (299)
Q Consensus        83 ~G~~v~Lsd~-~Gk~v-lL~-F~~----~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~  155 (299)
                      +| +.+|+|+ .||-- +|+ |..    ..-||.|...+.++.-....+...+|.+++||--+.+++..+.+..      
T Consensus        61 ~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------  133 (247)
T COG4312          61 NG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------  133 (247)
T ss_pred             Cc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence            44 6899996 67633 332 322    3359999999999988888899999999999999999999999887      


Q ss_pred             CccceeeeecCchHHHHHhCCcccCC----CC-------------ce--eEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151        156 GKLKIPLLSDLTHKISLDYGVYLSDQ----GH-------------TL--RGLFIIDRNGVLRQITMNDLPVGRSVDETLR  216 (299)
Q Consensus       156 ~~~~~p~l~D~~~~~~~~~gv~~~~~----g~-------------~~--p~~~lID~dG~I~~~~~~~~~~g~~~~evl~  216 (299)
                       ++.||.+++.++.+-+.|.+...+.    |.             ..  -+.|.-+.+|+|-..+..   ..+-.+++..
T Consensus       134 -GW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~---~~RG~e~~~~  209 (247)
T COG4312         134 -GWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ---YARGLEQLIG  209 (247)
T ss_pred             -CCcceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc---CCccccchhh
Confidence             9999999999888888897743321    11             11  235565777877655422   2223344444


Q ss_pred             HHhhccCCCCCCccccc
Q psy16151        217 LVQAFHDPLRTGAINGL  233 (299)
Q Consensus       217 ~l~~L~~~~~g~~vn~a  233 (299)
                      ...-|.....|+..+.+
T Consensus       210 ~~~~LD~tPkGR~e~~~  226 (247)
T COG4312         210 TWNLLDLTPKGRNEDGE  226 (247)
T ss_pred             HHHHhccCCCCCCCCCc
Confidence            44444445556665544

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.26  E-value=0.0021  Score=47.84  Aligned_cols=71  Identities=17%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .++++..-+..|+ +.||++|+...+.+.++.+++.  ++.+..+..+.                            ..+
T Consensus         8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~----------------------------~~e   56 (89)
T cd03026           8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL----------------------------FQD   56 (89)
T ss_pred             HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh----------------------------CHH
Confidence            3455554455554 9999999998888888876553  35554444331                            245


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      +++.||+.      ..|+++ +  ||+++..
T Consensus        57 ~a~~~~V~------~vPt~v-i--dG~~~~~   78 (89)
T cd03026          57 EVEERGIM------SVPAIF-L--NGELFGF   78 (89)
T ss_pred             HHHHcCCc------cCCEEE-E--CCEEEEe
Confidence            67788886      457775 4  6888765

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.05  E-value=0.0029  Score=46.06  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      .||+++|+|+ +.||+.|...-..+   .++.+.+. +++..+-|..++.+
T Consensus        16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~   64 (82)
T PF13899_consen   16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED   64 (82)
T ss_dssp             HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence            5899999997 99999998776555   22333233 46677766665543

...

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.04  E-value=0.0027  Score=60.96  Aligned_cols=89  Identities=8%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .++.+||.|| ++||++|....|.+.++.++++..  ++.+..|..+..+                             +
T Consensus       363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----------------------------~  412 (462)
T TIGR01130       363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----------------------------V  412 (462)
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----------------------------c
Confidence            4678999998 999999999999999999999862  5667666654210                             0


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .. |++.      ..|+.++..+.+++......   .....+.+++.+...
T Consensus       413 ~~-~~i~------~~Pt~~~~~~~~~~~~~~~~---g~~~~~~l~~~l~~~  453 (462)
T TIGR01130       413 PP-FEVE------GFPTIKFVPAGKKSEPVPYD---GDRTLEDFSKFIAKH  453 (462)
T ss_pred             CC-CCcc------ccCEEEEEeCCCCcCceEec---CcCCHHHHHHHHHhc
Confidence            11 3443      46899999765553112111   234677888877654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0908|consensus

Probab=97.04  E-value=0.0022  Score=55.96  Aligned_cols=75  Identities=23%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      |+.--+|.|+++|. ++||.+|....|.+.++..+|.  +..++=|.+|-                            -.
T Consensus        16 ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c~   64 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------CR   64 (288)
T ss_pred             hhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------hh
Confidence            44446789999998 9999999999999999999995  55666555442                            12


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      ..+..+||.      +.|+++.. .+|+-+...
T Consensus        65 ~taa~~gV~------amPTFiff-~ng~kid~~   90 (288)
T KOG0908|consen   65 GTAATNGVN------AMPTFIFF-RNGVKIDQI   90 (288)
T ss_pred             chhhhcCcc------cCceEEEE-ecCeEeeee
Confidence            344567775      56777766 677766555

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.98  E-value=0.00065  Score=54.20  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      ++.+..+.-+|.|. .+|||-|...+|.|.++.+...  ++++-.++.|..   .+..+.+                   
T Consensus        36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~~~~-------------------   90 (129)
T PF14595_consen   36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELMDQY-------------------   90 (129)
T ss_dssp             HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHTTTT-------------------
T ss_pred             HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHHHHH-------------------
Confidence            33445556666666 9999999999999999988754  555555555432   2222221                   


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                            --   ..+...|+.+++|.+|+.+.++
T Consensus        91 ------lt---~g~~~IP~~I~~d~~~~~lg~w  114 (129)
T PF14595_consen   91 ------LT---NGGRSIPTFIFLDKDGKELGRW  114 (129)
T ss_dssp             ------TT----SS--SSEEEEE-TT--EEEEE
T ss_pred             ------Hh---CCCeecCEEEEEcCCCCEeEEE
Confidence                  11   0123679999999999999887

>smart00594 UAS UAS domain

Probab=96.93  E-value=0.016  Score=45.60  Aligned_cols=69  Identities=12%  Similarity=-0.001  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .+|+++|+|+ +.||+.|.......   .++.+.+. +++.++.+.+++++                          ..+
T Consensus        26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e--------------------------g~~   77 (122)
T smart00594       26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE--------------------------GQR   77 (122)
T ss_pred             hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh--------------------------HHH
Confidence            5788999998 99999998765432   11222222 23344444333322                          246


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCC
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNG  195 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG  195 (299)
                      ++..|++.      ..|+..++|++|
T Consensus        78 l~~~~~~~------~~P~~~~l~~~~   97 (122)
T smart00594       78 VSQFYKLD------SFPYVAIVDPRT   97 (122)
T ss_pred             HHHhcCcC------CCCEEEEEecCC
Confidence            77778875      468999999997

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.89  E-value=0.0024  Score=48.14  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .|+++++.|+ +.||+.|....+.+.++.+++++ .+.++-|..
T Consensus        11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~   52 (103)
T cd02982          11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDA   52 (103)
T ss_pred             cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEch
Confidence            3788999998 89999999999999999999985 355555443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PHA02125 thioredoxin-like protein

Probab=96.81  E-value=0.016  Score=41.40  Aligned_cols=21  Identities=10%  Similarity=0.327  Sum_probs=17.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFND  119 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~  119 (299)
                      ++.|+ +.||++|+...|.|.+
T Consensus         2 iv~f~-a~wC~~Ck~~~~~l~~   22 (75)
T PHA02125          2 IYLFG-AEWCANCKMVKPMLAN   22 (75)
T ss_pred             EEEEE-CCCCHhHHHHHHHHHH
Confidence            56676 9999999988887754

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=96.59  E-value=0.014  Score=45.72  Aligned_cols=110  Identities=13%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             EcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         88 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        88 ~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      .|+++++| -+||+|-+..--+.-..++..|.+....+.++.+.++.+.-+.....                ..++-.+.
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------~~~~~~~~   65 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------GKPLSPED   65 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------cCcCCHHH
Confidence            36788886 56777754444444556677777777778888888888854432110                01111122


Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ...+.+.|++..     ..-+.+||++||.+..++    ....+.+++.+.|++..
T Consensus        66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~----~~p~~~~~lf~~ID~MP  112 (118)
T PF13778_consen   66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRW----PEPIDPEELFDTIDAMP  112 (118)
T ss_pred             HHHHHHHhCCCC-----CceEEEEEeCCCcEEEec----CCCCCHHHHHHHHhCCc
Confidence            367888888752     224789999999999886    23347889999998753

>KOG0190|consensus

Probab=96.53  E-value=0.0081  Score=57.94  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  174 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~  174 (299)
                      .++++-|| +.||.+|....|.+.+..+.+++.+=.|--.-+|..                          .++.++.+|
T Consensus        43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--------------------------~~~~~~~~y   95 (493)
T KOG0190|consen   43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--------------------------EESDLASKY   95 (493)
T ss_pred             ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--------------------------hhhhhHhhh
Confidence            36677777 999999999999999999999875322222222221                          236788889


Q ss_pred             CCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        175 GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       175 gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      ++.      ..|+.-|+ ++|+....+    ..++..+.++..+++...|
T Consensus        96 ~v~------gyPTlkiF-rnG~~~~~Y----~G~r~adgIv~wl~kq~gP  134 (493)
T KOG0190|consen   96 EVR------GYPTLKIF-RNGRSAQDY----NGPREADGIVKWLKKQSGP  134 (493)
T ss_pred             cCC------CCCeEEEE-ecCCcceec----cCcccHHHHHHHHHhccCC
Confidence            986      35676666 899983332    3456788888888875443

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.45  E-value=0.014  Score=40.30  Aligned_cols=37  Identities=16%  Similarity=0.068  Sum_probs=25.7

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      |..|+ +.|||+|....+.|.++.+..  .++.+.-+.++
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~   39 (67)
T cd02973           3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA   39 (67)
T ss_pred             EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence            45555 999999999988888886543  24666555443

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=95.18  E-value=0.065  Score=42.02  Aligned_cols=51  Identities=18%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             CCCeEEEEEEeC------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151         93 YGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  147 (299)
Q Consensus        93 ~Gk~vlL~F~~~------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~  147 (299)
                      .|+++.|+|..+      +|||.|....|.+.+...... .+..+|-|.+.+.   ..|..
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkd   74 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKD   74 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCC
Confidence            567788888733      599999999999999887743 4778888888764   36764

; PDB: 1V9W_A 1WOU_A.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=95.17  E-value=0.11  Score=43.09  Aligned_cols=99  Identities=14%  Similarity=0.060  Sum_probs=46.7

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      +..+.-.+|+++|.++ .+||..|.....      +-|.            + .+..+++++.         -.|+..|.
T Consensus        30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~------esf~------------d-~eVa~~lN~~---------FI~VkvDr   80 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIG-YSWCHWCHVMER------ESFS------------D-PEVAEYLNRN---------FIPVKVDR   80 (163)
T ss_dssp             HHHHHHHT--EEEEEE--TT-HHHHHHHH------HTTT--------------HHHHHHHHHH----------EEEEEET
T ss_pred             HHHHHhcCCcEEEEEE-ecCCcchhhhcc------cCcC------------C-HHHHHHHhCC---------EEEEEecc
Confidence            3444446789999988 889999975432      1121            1 1233333321         12333333


Q ss_pred             c--hHHHHHh--------CCcccCCCCceeEEEEEeCCCcEEEEEeccCCC----CCCHHHHHHHHhh
Q psy16151        167 T--HKISLDY--------GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV----GRSVDETLRLVQA  220 (299)
Q Consensus       167 ~--~~~~~~~--------gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~----g~~~~evl~~l~~  220 (299)
                      +  .++.+.|        |.-      ..|.+++++|||+..+...+-.+.    .....+++..+..
T Consensus        81 ee~Pdid~~y~~~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~  142 (163)
T PF03190_consen   81 EERPDIDKIYMNAVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAE  142 (163)
T ss_dssp             TT-HHHHHHHHHHHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHH
Confidence            2  3344444        221      468999999999999987654332    1244555555543

; PDB: 3IRA_A.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=94.93  E-value=0.11  Score=44.86  Aligned_cols=28  Identities=14%  Similarity=0.136  Sum_probs=19.7

Q ss_pred             CeE-EEEEEeCCCCCCchhhHHHHHHHHHH
Q psy16151         95 KYL-VFFFYPLDFTFVCPTEILAFNDRLEE  123 (299)
Q Consensus        95 k~v-lL~F~~~~~cp~C~~~~~~l~~l~~~  123 (299)
                      +++ |+.|| +.||++|....+.+.++..+
T Consensus       133 ~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~  161 (215)
T TIGR02187       133 EPVRIEVFV-TPTCPYCPYAVLMAHKFALA  161 (215)
T ss_pred             CCcEEEEEE-CCCCCCcHHHHHHHHHHHHh
Confidence            444 44466 99999999877766666544

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=94.89  E-value=0.063  Score=37.78  Aligned_cols=33  Identities=3%  Similarity=0.113  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +..|| ++|||.|+...+.|.++       ++..-.+.++.
T Consensus         2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~   34 (77)
T TIGR02200         2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE   34 (77)
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence            34555 89999999987766543       55555565554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=94.55  E-value=0.13  Score=40.21  Aligned_cols=97  Identities=14%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +.+.+||-|+ ++| |.|.. .|++.++.+++....-.|+..-+|-.+    +-+                 ..+.++++
T Consensus        17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d----~~~-----------------~~~~~L~~   72 (116)
T cd03007          17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD----YGE-----------------KLNMELGE   72 (116)
T ss_pred             cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc----ccc-----------------hhhHHHHH
Confidence            3457888887 977 67775 599999998886533233322333100    000                 01357899


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|||...    ..|+.+++. +|.- .... +. +.++..+.+++.+..
T Consensus        73 ~y~I~~~----gyPTl~lF~-~g~~~~~~~-Y~-G~~r~~~~lv~~v~~  114 (116)
T cd03007          73 RYKLDKE----SYPVIYLFH-GGDFENPVP-YS-GADVTVDALQRFLKG  114 (116)
T ss_pred             HhCCCcC----CCCEEEEEe-CCCcCCCcc-CC-CCcccHHHHHHHHHh
Confidence            9999522    368988884 5631 1111 11 112778888887764

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=94.55  E-value=0.14  Score=35.35  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=22.4

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +|.++|||.|....+.|.+       .++.+..+.+++
T Consensus         4 lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   34 (74)
T TIGR02196         4 VYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK   34 (74)
T ss_pred             EEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence            3449999999987665543       477777777664

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG0190|consensus

Probab=94.30  E-value=0.051  Score=52.55  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI  127 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~  127 (299)
                      .+|-|||-|+ +.||.+|..-.|.+.+|.+.|++.
T Consensus       383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~  416 (493)
T KOG0190|consen  383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD  416 (493)
T ss_pred             cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence            5678999998 999999999999999999999974

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=93.71  E-value=0.56  Score=36.57  Aligned_cols=89  Identities=12%  Similarity=0.042  Sum_probs=53.6

Q ss_pred             cCCCeEEEEEEeCC----CCCCchhhH--HHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         92 YYGKYLVFFFYPLD----FTFVCPTEI--LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~----~cp~C~~~~--~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      -.+|+++|+++ +.    ||..|+..+  |.+.+..    +.++.+.+.++++++                         
T Consensus        15 ~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~e-------------------------   64 (116)
T cd02991          15 QELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPE-------------------------   64 (116)
T ss_pred             hhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChH-------------------------
Confidence            35789999998 66    777786543  2233222    234555555555433                         


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEE---eCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFII---DRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lI---D~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       ..+++..+++.      ..|...+|   +.+.+|+.+..+    ....++++..+...
T Consensus        65 -g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G----~~~~~~ll~~L~~~  112 (116)
T cd02991          65 -GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEG----LIQPEDLINRLTFI  112 (116)
T ss_pred             -HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeC----CCCHHHHHHHHHHH
Confidence             15677778875      56888888   444555655533    23567777776643

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG0191|consensus

Probab=93.61  E-value=0.48  Score=44.78  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=28.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ  126 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~  126 (299)
                      .++..++.|| +.||.+|....|.+.++...+++
T Consensus        46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~   78 (383)
T KOG0191|consen   46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG   78 (383)
T ss_pred             cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence            3457888888 99999999999999998888875

>cd07302 CHD cyclase homology domain

Probab=93.61  E-value=0.068  Score=43.67  Aligned_cols=52  Identities=33%  Similarity=0.413  Sum_probs=43.5

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeeccc-ceeEEEEE
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGK-GLITTYFI  277 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~-~~~~t~~~  277 (299)
                      +|++||.|    +...+|.|.+|+++++.|....|.+...|.+.+||. +.+.+|++
T Consensus       121 ~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~~  177 (177)
T cd07302         121 IGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL  177 (177)
T ss_pred             ecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEEC
Confidence            46677666    445589999999999999876799999999999997 88999874

Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.

>KOG3618|consensus

Probab=93.60  E-value=0.048  Score=54.74  Aligned_cols=64  Identities=27%  Similarity=0.335  Sum_probs=49.7

Q ss_pred             hccCCCCCCccccc----cceeccceechHHHHHHHhhcCc-----eEEecceeeeccc------ceeEEEEEEccccc
Q psy16151        220 AFHDPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGV-----TCELRGRTFIKGK------GLITTYFIRQQEIE  283 (299)
Q Consensus       220 ~L~~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~-----~~~~rg~~~~k~~------~~~~t~~~~~~~~~  283 (299)
                      ..+...|...||.|    |.|++|+.|+||+|++.|.+.++     +.+.-|+..|-|.      |.+.||++.|+.+.
T Consensus       452 RfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G~~ga  530 (1318)
T KOG3618|consen  452 RFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDDRYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISGQRGA  530 (1318)
T ss_pred             eEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcccceeccCccccccceeEEeceeeecCCcccceEEecCcccc
Confidence            34556678888888    89999999999999999987532     3445566677663      67999999998753

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=93.56  E-value=0.074  Score=52.12  Aligned_cols=94  Identities=16%  Similarity=0.207  Sum_probs=54.2

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHH-HHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEIL-AFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~-~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      -++|+|+|+|+ ++||-.|+..-+ .+.+-+.+++-.|+..+=+.+         .+.               .+.+.++
T Consensus       472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDv---------T~~---------------~p~~~~l  526 (569)
T COG4232         472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADV---------TAN---------------DPAITAL  526 (569)
T ss_pred             CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeee---------cCC---------------CHHHHHH
Confidence            35679999999 999999974432 223333444433444332221         110               1113566


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .++||+.      ..|+.++++++|.-....    ..-.+.+.+++.++.
T Consensus       527 Lk~~~~~------G~P~~~ff~~~g~e~~~l----~gf~~a~~~~~~l~~  566 (569)
T COG4232         527 LKRLGVF------GVPTYLFFGPQGSEPEIL----TGFLTADAFLEHLER  566 (569)
T ss_pred             HHHcCCC------CCCEEEEECCCCCcCcCC----cceecHHHHHHHHHH
Confidence            6777876      458999999998755442    222345566666543

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=93.54  E-value=0.76  Score=40.38  Aligned_cols=37  Identities=14%  Similarity=-0.045  Sum_probs=27.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      .|+.+|+.|. -..||+|+...+.+.++.    +.|+.|..+
T Consensus       106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~~  142 (232)
T PRK10877        106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRYL  142 (232)
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence            4677788887 777999999888877653    346776554

>TIGR02180 GRX_euk Glutaredoxin

Probab=93.22  E-value=0.12  Score=37.07  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=24.1

Q ss_pred             EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      +.|+ +.|||.|....+.|.++.  .. ..+.++-|+.+
T Consensus         2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~   36 (84)
T TIGR02180         2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL   36 (84)
T ss_pred             EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence            4455 999999999998888764  11 12566666654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.09  E-value=0.58  Score=41.61  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe-----CCCHH-hHHHHhhc--------ccccCCCCcc
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS-----VDSHF-THLAWVNT--------PRKEGGLGKL  158 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs-----~d~~~-~~~~~~~~--------~~~~~~~~~~  158 (299)
                      .+|.+|.+|. -..||+|+.....+.++.+.   .+++|.-+-     .++.. ...-|...        +...+...+.
T Consensus       116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~  191 (251)
T PRK11657        116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL  191 (251)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence            4667777777 77799999988887765432   135543332     22211 11222221        1111000011


Q ss_pred             ceeee--------ecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        159 KIPLL--------SDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       159 ~~p~l--------~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      .-+..        .+.+.++++.+|+.      ..|+.|+.|.+|++..+
T Consensus       192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v  235 (251)
T PRK11657        192 KPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQV  235 (251)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEe
Confidence            11110        01135678888886      45899999999987655

>KOG0912|consensus

Probab=93.02  E-value=0.34  Score=43.85  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce-eeeecCchHHHHH
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI-PLLSDLTHKISLD  173 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~  173 (299)
                      ..|+|.|+ ++||+..+...|-+.+..+.++++-                 -+        +..-| .+=+|.+..++..
T Consensus        14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~-----------------P~--------~kvvwg~VDcd~e~~ia~k   67 (375)
T KOG0912|consen   14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEF-----------------PE--------GKVVWGKVDCDKEDDIADK   67 (375)
T ss_pred             eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhC-----------------CC--------cceEEEEcccchhhHHhhh
Confidence            46788887 9999999999999999988887521                 00        01122 1224556678888


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |.|.      -+|+.=|+ .+|.+..+.+   +..+.++.+.+.++.
T Consensus        68 y~I~------KyPTlKvf-rnG~~~~rEY---Rg~RsVeaL~efi~k  104 (375)
T KOG0912|consen   68 YHIN------KYPTLKVF-RNGEMMKREY---RGQRSVEALIEFIEK  104 (375)
T ss_pred             hccc------cCceeeee-eccchhhhhh---ccchhHHHHHHHHHH
Confidence            9886      46787666 6888876653   334566666666543

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=92.56  E-value=1.3  Score=35.47  Aligned_cols=45  Identities=16%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+..++..|||.      ..|+.+++ +||+++....+.    .+.+++.+.++.+
T Consensus        79 ~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~  123 (132)
T PRK11509         79 QSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGL  123 (132)
T ss_pred             CCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHH
Confidence            356788999996      57898888 799999887432    2345666666554

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=92.15  E-value=1.4  Score=31.28  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=16.0

Q ss_pred             CCCCCCchhhHHHHHHHHHHH
Q psy16151        104 LDFTFVCPTEILAFNDRLEEF  124 (299)
Q Consensus       104 ~~~cp~C~~~~~~l~~l~~~~  124 (299)
                      +..||.|......+.++..++
T Consensus         7 ~~~C~~C~~~~~~~~~~~~~~   27 (76)
T PF13192_consen    7 SPGCPYCPELVQLLKEAAEEL   27 (76)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHHHhc
Confidence            677999997777777766555

...

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=90.97  E-value=0.67  Score=33.61  Aligned_cols=35  Identities=9%  Similarity=-0.083  Sum_probs=27.0

Q ss_pred             EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      |..+|||.|......|.++..++  .++.+.-+.++.
T Consensus         6 y~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~   40 (85)
T PRK11200          6 FGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA   40 (85)
T ss_pred             EeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence            34889999999999999887655  367777776653

>KOG3425|consensus

Probab=90.95  E-value=0.61  Score=36.36  Aligned_cols=56  Identities=18%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             cCcc-CCCeEEEEEEeC-------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151         89 LSDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        89 Lsd~-~Gk~vlL~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      ++++ +|+.+.+.|..+       +|||.|....|-+.+..+... .++.+|-|-+.+..   .|..-
T Consensus        19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp---~Wk~p   82 (128)
T KOG3425|consen   19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRP---YWKDP   82 (128)
T ss_pred             HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCC---cccCC
Confidence            3444 566666666533       599999999999998877544 47888888876642   56643

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.94  E-value=1.3  Score=36.23  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhh---HHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTE---ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~---~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      .-.+|+.+|.|- ...|+.|...   +-.-.++++.++. .+.++-+...+.... .+...        ..   ...-..
T Consensus        39 ~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv-~f~~g--------~k---ee~~s~  104 (182)
T COG2143          39 SPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPV-LFKVG--------DK---EEKMST  104 (182)
T ss_pred             CccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcce-EeecC--------ce---eeeecH
Confidence            346799999997 6669999643   3333445555543 345544443221100 00000        11   111123


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .++++.|++.      +.|+.++.|.+|+-+....    .-.+.++.+..++-...
T Consensus       105 ~ELa~kf~vr------stPtfvFfdk~Gk~Il~lP----GY~ppe~Fl~vlkYVa~  150 (182)
T COG2143         105 EELAQKFAVR------STPTFVFFDKTGKTILELP----GYMPPEQFLAVLKYVAD  150 (182)
T ss_pred             HHHHHHhccc------cCceEEEEcCCCCEEEecC----CCCCHHHHHHHHHHHHH
Confidence            6899999997      5699999999999887652    23356677777665543

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=90.46  E-value=0.79  Score=31.32  Aligned_cols=31  Identities=13%  Similarity=0.120  Sum_probs=20.9

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +|...|||.|......|.+       .++.+..+.+|.
T Consensus         4 l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~   34 (73)
T cd02976           4 VYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDE   34 (73)
T ss_pred             EEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence            3348899999876554443       467777777764

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=89.54  E-value=1.3  Score=37.56  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=21.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFND  119 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~  119 (299)
                      .+++.|+.|. -..||+|....+.+.+
T Consensus        76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFT-DPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence            4677777777 7889999999888876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=89.26  E-value=0.6  Score=37.21  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=28.0

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      ++++|+.|+ ..+||+|....+.+.++..++.+  +.++..
T Consensus         5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~   42 (154)
T cd03023           5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK   42 (154)
T ss_pred             CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence            456677776 88999999999999988776643  444433

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=89.07  E-value=1.5  Score=33.50  Aligned_cols=76  Identities=18%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      .++++|+=. ++.||....-..+|.+.++...+. +.++.|-+-..                        -+....++..
T Consensus        19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~------------------------R~vSn~IAe~   72 (105)
T PF11009_consen   19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEY------------------------RPVSNAIAED   72 (105)
T ss_dssp             -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGG------------------------HHHHHHHHHH
T ss_pred             cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeC------------------------chhHHHHHHH
Confidence            466666655 666887777777777776665542 55555533111                        0124689999


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      |||...     .|..+|| +||++++..
T Consensus        73 ~~V~He-----SPQ~ili-~~g~~v~~a   94 (105)
T PF11009_consen   73 FGVKHE-----SPQVILI-KNGKVVWHA   94 (105)
T ss_dssp             HT---------SSEEEEE-ETTEEEEEE
T ss_pred             hCCCcC-----CCcEEEE-ECCEEEEEC
Confidence            999754     4899999 699999875

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=88.89  E-value=1.1  Score=30.35  Aligned_cols=38  Identities=5%  Similarity=-0.107  Sum_probs=25.3

Q ss_pred             eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151        103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  147 (299)
Q Consensus       103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~  147 (299)
                      ...|||.|+.....|.+.       ++.+.-+.++......+++.
T Consensus         6 ~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~   43 (72)
T cd02066           6 SKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK   43 (72)
T ss_pred             ECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence            388999999887766654       56777777765443444443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=88.24  E-value=1.1  Score=31.99  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=23.5

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      |..|. .+|||.|...-..|.       +.|+....+.++...
T Consensus        10 V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~   44 (79)
T TIGR02190        10 VVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGNDA   44 (79)
T ss_pred             EEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCCh
Confidence            33444 899999988776664       347777667776543

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products

Probab=87.19  E-value=4.6  Score=33.61  Aligned_cols=116  Identities=14%  Similarity=0.020  Sum_probs=58.3

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHH-------HHhhc--
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-------EFHQI--  127 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~-------~~~~~--  127 (299)
                      .....+.+|..+|+..+..  -.||+++.|.+.   .|++-|++|-...-.+.+...+..|.+..+       .|...  
T Consensus        25 ~~a~~l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~  102 (169)
T PF07976_consen   25 SLAGGLRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDR  102 (169)
T ss_dssp             GGBTTS-TTCB----EEEE--TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred             ccccCcCCccccCCceEEE--EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCC
Confidence            3456799999999999863  468899999985   699988888734434444444555554332       33322  


Q ss_pred             ----CcEEEEEeCCCHH--hHHHHhhcccccCCCCc-cceeeeecC------chHHHHHhCCc
Q psy16151        128 ----NTEVVAASVDSHF--THLAWVNTPRKEGGLGK-LKIPLLSDL------THKISLDYGVY  177 (299)
Q Consensus       128 ----gv~vi~Vs~d~~~--~~~~~~~~~~~~~~~~~-~~~p~l~D~------~~~~~~~~gv~  177 (299)
                          -++++.|...+..  ++.++=+.++...+..+ ..+.+..|.      .+.+.+.|||.
T Consensus       103 ~~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid  165 (169)
T PF07976_consen  103 DPDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID  165 (169)
T ss_dssp             -TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred             CCCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence                2778888654311  11122222221111112 234556663      37888999974

The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=86.92  E-value=4.4  Score=40.26  Aligned_cols=30  Identities=17%  Similarity=-0.016  Sum_probs=21.1

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHH
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEF  124 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~  124 (299)
                      +++-|-+|.+.+||.|+.....++++..+.
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~  505 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLN  505 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhC
Confidence            556555555999999997777666665543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PHA03050 glutaredoxin; Provisional

Probab=86.71  E-value=1  Score=34.64  Aligned_cols=25  Identities=12%  Similarity=0.095  Sum_probs=16.0

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDR  120 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l  120 (299)
                      .+.|+|+ . .+|||+|......|.+.
T Consensus        12 ~~~V~vy-s-~~~CPyC~~ak~~L~~~   36 (108)
T PHA03050         12 NNKVTIF-V-KFTCPFCRNALDILNKF   36 (108)
T ss_pred             cCCEEEE-E-CCCChHHHHHHHHHHHc
Confidence            3444443 3 88999998776655543

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=85.74  E-value=1.2  Score=33.56  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      .+|+|+.  .+|||.|...-..|.+       .|+..-.+.+|.
T Consensus         8 ~~Vvvys--k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~   42 (99)
T TIGR02189         8 KAVVIFS--RSSCCMCHVVKRLLLT-------LGVNPAVHEIDK   42 (99)
T ss_pred             CCEEEEE--CCCCHHHHHHHHHHHH-------cCCCCEEEEcCC
Confidence            4444443  7899999876654443       356555566653

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=85.29  E-value=1.6  Score=29.16  Aligned_cols=40  Identities=8%  Similarity=-0.065  Sum_probs=26.3

Q ss_pred             EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151         99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  146 (299)
Q Consensus        99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~  146 (299)
                      +.|. ..+||.|......|       ++.|+..-.+.++......+.+
T Consensus         2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l   41 (60)
T PF00462_consen    2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREEL   41 (60)
T ss_dssp             EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHH
T ss_pred             EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHH
Confidence            4444 88999998776555       4467888888777643333333

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=85.12  E-value=2.3  Score=31.01  Aligned_cols=35  Identities=9%  Similarity=-0.084  Sum_probs=22.7

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .|..+|||.|......|.++..++.  ++.+.-+.++
T Consensus         4 vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~   38 (86)
T TIGR02183         4 IFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH   38 (86)
T ss_pred             EEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence            3458899999988877776543322  4555555554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=84.88  E-value=2.6  Score=33.99  Aligned_cols=49  Identities=12%  Similarity=0.017  Sum_probs=34.8

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASV  136 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~  136 (299)
                      +.+-+-.++++|+.|+ ..-||+|....+.+.++.+++- +..+.++...+
T Consensus         5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            3444445677777776 7779999999999999999982 33577777755

...

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=84.58  E-value=1.3  Score=31.32  Aligned_cols=33  Identities=9%  Similarity=0.124  Sum_probs=21.5

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +|...|||.|...-..|.++..     ...++=|..++
T Consensus         4 ~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~   36 (82)
T cd03419           4 VFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE   36 (82)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence            3448999999988877776532     34455555543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=82.80  E-value=2.4  Score=29.57  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      +|...+||.|......|.+       .|+.+-.+.++..
T Consensus         3 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~   34 (72)
T TIGR02194         3 VYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQ   34 (72)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCC
Confidence            3447889999887766653       5777766766643

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=82.52  E-value=3.7  Score=30.72  Aligned_cols=39  Identities=5%  Similarity=-0.007  Sum_probs=24.4

Q ss_pred             CCCeEEEEEEe---CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         93 YGKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        93 ~Gk~vlL~F~~---~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ..++|+|+--.   .+|||.|...-..|.+       .|+....+.++.
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~   51 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE   51 (97)
T ss_pred             ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence            34566666542   2789999876655544       466666666643

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=82.40  E-value=3.3  Score=28.73  Aligned_cols=29  Identities=7%  Similarity=-0.011  Sum_probs=19.9

Q ss_pred             eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ..+|||.|......|.       +.|+...-+.++.
T Consensus         7 s~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~   35 (72)
T cd03029           7 TKPGCPFCARAKAALQ-------ENGISYEEIPLGK   35 (72)
T ss_pred             ECCCCHHHHHHHHHHH-------HcCCCcEEEECCC
Confidence            3889999988765554       3466666666654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=81.81  E-value=4.5  Score=29.20  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=22.3

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      .|...|||.|...-..|       +++|+.+--+.++..
T Consensus         5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~   36 (81)
T PRK10329          5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRV   36 (81)
T ss_pred             EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCC
Confidence            33488999998766555       346888777777643

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=81.09  E-value=4  Score=28.30  Aligned_cols=30  Identities=13%  Similarity=0.141  Sum_probs=21.0

Q ss_pred             EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151        102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus       102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      |..++||.|......|.+       .|+.+-.+.++.
T Consensus         5 y~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~   34 (75)
T cd03418           5 YTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG   34 (75)
T ss_pred             EeCCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence            348899999887655543       477777777654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=80.60  E-value=19  Score=35.76  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCc---EEEEEeccCCCCCCHHHHHHHHhhccCCCC-------------CCcc
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGV---LRQITMNDLPVGRSVDETLRLVQAFHDPLR-------------TGAI  230 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~---I~~~~~~~~~~g~~~~evl~~l~~L~~~~~-------------g~~v  230 (299)
                      +.+.++.|++.      ..|++.|.|.+|.   |++.   +.+.|..+..++..|-.+.....             .+++
T Consensus       408 ~~~~~~~~~v~------~~P~~~i~~~~~~~~~i~f~---g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~  478 (555)
T TIGR03143       408 EPESETLPKIT------KLPTVALLDDDGNYTGLKFH---GVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPV  478 (555)
T ss_pred             chhhHhhcCCC------cCCEEEEEeCCCcccceEEE---ecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCe
Confidence            46788889975      3588888876764   5555   45666666666666544432211             1222


Q ss_pred             --cc-ccceeccceechHHHHHHHhhc-CceEEecc-----eee-ecccceeEEEEEEcc
Q psy16151        231 --NG-LSLLVIGLFQVTEKTCDILEDH-GVTCELRG-----RTF-IKGKGLITTYFIRQQ  280 (299)
Q Consensus       231 --n~-ast~~~~~i~~s~~~~~~L~~~-~~~~~~rg-----~~~-~k~~~~~~t~~~~~~  280 (299)
                        .+ -+.+|+-|.++-+...++.... +++.+.--     ++. =-|--..|+-+++++
T Consensus       479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~  538 (555)
T TIGR03143       479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQ  538 (555)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEECCE
Confidence              22 2889999998877777776665 45443211     111 113444566666653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=80.57  E-value=4.3  Score=29.78  Aligned_cols=39  Identities=8%  Similarity=0.004  Sum_probs=22.9

Q ss_pred             CCCeEEEEEEe---CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         93 YGKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        93 ~Gk~vlL~F~~---~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +.++|+|+--.   ..|||.|......|.+       .|+..-.+.++.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~   47 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILE   47 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCC
Confidence            45666666431   1589999776655544       456666665543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family

Probab=80.21  E-value=11  Score=28.64  Aligned_cols=68  Identities=10%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEE
Q psy16151        112 TEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFII  191 (299)
Q Consensus       112 ~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lI  191 (299)
                      .....|++..+++++.+..-+.|++++.+.+.+..+-        -...+++.....++++.+|+.      .+|  ++|
T Consensus        35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l~------hYP--vLi   98 (105)
T TIGR03765        35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGLR------HYP--VLI   98 (105)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCCC------ccc--EEE
Confidence            4566788888999999989899999998877665543        234566766677999999985      334  677


Q ss_pred             eCCC
Q psy16151        192 DRNG  195 (299)
Q Consensus       192 D~dG  195 (299)
                      .++|
T Consensus        99 t~tg  102 (105)
T TIGR03765        99 TATG  102 (105)
T ss_pred             ecCc
Confidence            7776

This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		2e-74
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		2e-74
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		2e-74
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		2e-74
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		9e-74
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		1e-73
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		2e-73
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		3e-73
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		4e-73
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		1e-61
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		8e-61
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		8e-61
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		9e-61
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		2e-59
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		2e-59
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		3e-55
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		3e-55
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		3e-55
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		3e-48
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		1e-47
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		4e-46
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		2e-43
2h66_A	213	The Crystal Structure Of Plasmodium Vivax 2-Cys Per		4e-38
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		7e-35
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		2e-34
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		3e-34
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-22
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		1e-22
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		4e-22
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		4e-22
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-22
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		1e-21
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		2e-21
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		4e-21
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		4e-21
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		4e-21
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		2e-20
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		5e-20
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		7e-20
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		8e-20
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		3e-19
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		4e-19
2ywn_A	157	Crystal Structure Of Peroxiredoxin-Like Protein Fro		7e-14
3hjp_A	164	The Crystal Structure Of Bcp4 From Sulfolobus Solfa		2e-12
1xxu_A	153	Crystal Structure Of Ahpe From Mycrobacterium Tuber		3e-10
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		1e-09
1xvw_A	160	Crystal Structure Of Ahpe From Mycobacterium Tuberc		5e-09
3drn_A	161	The Crystal Structure Of Bcp1 From Sulfolobus Sulfa		4e-08
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		4e-08
4gqc_A	164	Crystal Structure Of Aeropyrum Pernix Peroxiredoxin		1e-07
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		2e-07
2cx3_A	164	Crystal Structure Of A Bacterioferritin Comigratory		3e-07
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		5e-07
3ixr_A	179	Crystal Structure Of Xylella Fastidiosa Prxq C47s M		2e-06
3gkk_A	163	Insights Into The Alkyl Peroxide Reduction Activity		6e-05
2jsy_A	167	Solution Structure Of Tpx In The Oxidized State Len		2e-04
1ab8_A	220	Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COM		4e-04
3gkm_A	163	Insights Into The Alkyl Peroxide Reduction Activity		5e-04
3gkn_A	163	Insights Into The Alkyl Peroxide Reduction Activity		8e-04
4eo3_A	322	Peroxiredoxin Nitroreductase Fusion Enzyme Length =		9e-04

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 64  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 123
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 184 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 219

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 64  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 123
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 184 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 219

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 56  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 115
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 116 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 175
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 176 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 211

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 142/156 (91%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 64  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 123
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 184 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 219

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score =  273 bits (698), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 141/156 (90%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  
Sbjct: 56  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS 115
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS F HLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 116 INTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 175
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 176 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 211

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/156 (82%), Positives = 141/156 (90%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF  
Sbjct: 50  ISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA 109
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTLR
Sbjct: 110 INTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLR 169
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF 
Sbjct: 170 GLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQ 205

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 140/155 (90%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF  I
Sbjct: 22  SMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI 81
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
           NTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLRG
Sbjct: 82  NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 141
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           LFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 142 LFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 176

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 141/156 (90%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFV PTEI+AF DRLEEF  
Sbjct: 64  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRS 123
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 124 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 183
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 184 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 219

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score =  271 bits (692), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 141/156 (90%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFV PTEI+AF DRLEEF  
Sbjct: 56  ISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVXPTEIIAFGDRLEEFRS 115
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTLR
Sbjct: 116 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLR 175
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 176 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 211

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 131/157 (83%), Gaps = 1/157 (0%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 8   IGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N++V+ ASVDSHF HLAWVNTP+K+GGLG + IPL+SD    I+ DYGV  +D+G + 
Sbjct: 68  KLNSQVIGASVDSHFEHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISF 127
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 128 RGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQ 164

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score =  230 bits (586), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFVCPTEI+AF+DR EEF 
Sbjct: 8   IGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N +V+ ASVDSHF+HLAW+NTP+K+GGLG + IPL+SD    I+ DYGV  +D+G + 
Sbjct: 68  KLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISF 127
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 128 RGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQ 164

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score =  230 bits (586), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 129/155 (83%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH 
Sbjct: 29  VTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD 88
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  LR
Sbjct: 89  VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 148
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           GLFIID NGV++ +++NDLPVGRSV+ETLRLV+AF
Sbjct: 149 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score =  229 bits (585), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 128/156 (82%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFV PTEI+AF++R E+F +
Sbjct: 7   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVXPTEIIAFSNRAEDFRK 66
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   R
Sbjct: 67  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYR 126
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 127 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 162

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 129/157 (82%), Gaps = 1/157 (0%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFV PTEI+AF+DR EEF 
Sbjct: 8   IGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVDPTEIIAFSDRAEEFK 67
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N++V+ ASVDSHF HL WVNTP+K+GGLG + IPL+SD    I+ DYGV  +D+G + 
Sbjct: 68  KLNSQVIGASVDSHFEHLEWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISF 127
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF 
Sbjct: 128 RGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQ 164

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 128/157 (81%), Gaps = 1/157 (0%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           +  PAP ++ TAV+ DGQ K+I LSDY GKY+VFFFYPLDFTFV PTEI+AF+DR EEF 
Sbjct: 8   IGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVSPTEIIAFSDRAEEFK 67
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N +V+ ASVDSHF HLAW+NTP+K+GGLG + IPL+SD    I+ DYGV  +D+G + 
Sbjct: 68  KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISF 127
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID  G+LRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 128 RGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQ 164

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 38  LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN 97
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
             N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 98  SRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 157
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID NG+LRQIT+ND PVGRSVDETLRL+ AF 
Sbjct: 158 RGLFIIDPNGILRQITLNDKPVGRSVDETLRLLDAFQ 194

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 38  LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN 97
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
             N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 98  SRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 157
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID NG+LRQIT+ND PVGRSVDETLRL+ AF 
Sbjct: 158 RGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQ 194

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 41  LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN 100
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
             N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 101 SRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 160
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID NG+LRQIT+ND PVGRSVDETLRL+ AF 
Sbjct: 161 RGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQ 197

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 116/164 (70%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           V K AP ++ TAVVDG   E+ L  Y GKY+V  F PL FTFV PTEI+AF++  ++F +
Sbjct: 25  VQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE 84
Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
              +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D  H +S DYGV + ++G  LR
Sbjct: 85  QGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALR 144
Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           GLFIID  GV+R IT+NDLPVGR+VDE LRLV+AF    + G +
Sbjct: 145 GLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTV 188

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           ++ PAP ++  A++ +G  K+I LS Y GK++V FFYPLDFTFVCPTE++AF+D +  F+
Sbjct: 28  INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFN 87
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++N EV+A S+DS + HL W    RK+GGLG + IP+L+D T  I+  YGV    QG   
Sbjct: 88  ELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAY 147
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           RGLFIID +G+LRQIT+ND+PVGRSV+E LRL++AF 
Sbjct: 148 RGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQ 184

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
Query: 70  PAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
           PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I 
Sbjct: 11  PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG 70
Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
            EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G   RGL
Sbjct: 71  CEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGL 130
Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           FIID    LRQIT+NDLPVGR VDE LRLV+AF 
Sbjct: 131 FIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 164

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 70  PAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
           PAP +   A+  +G  K++ LS Y GKY+V FFYP DFTFVCPTEI+ F+D  + F +IN
Sbjct: 11  PAPEFDDXALXPNGTFKKVSLSSYKGKYVVLFFYPXDFTFVCPTEIIQFSDDAKRFAEIN 70
Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
           TEV++ S DS ++HL W +  RK+GGLG   IP L+D T  I+  YGV   D G   RG+
Sbjct: 71  TEVISCSCDSEYSHLQWTSVDRKKGGLGPXAIPXLADKTKAIARAYGVLDEDSGVAYRGV 130
Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           FIID NG LRQI +ND P+GR+V+E +RLV+A  
Sbjct: 131 FIIDPNGKLRQIIINDXPIGRNVEEVIRLVEALQ 164

>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213

Iteration: 1
 Score =  155 bits (391), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 110/166 (66%), Gaps = 3/166 (1%)
Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           V K APF++  AV  D    E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A +  L+ F
Sbjct: 23  VGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAF 82
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
           H+ N E++  SVDS +THLAW  TP  +GG+G +K  LLSD+T  IS DY V L D   +
Sbjct: 83  HERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNV-LFDDSVS 141
Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
           LR   +ID NG+++ + +N+L +GRSVDE LR++ A     + G +
Sbjct: 142 LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDV 187

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 71  APFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
           AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 6   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 65
Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V L ++   LR  
Sbjct: 66  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVALRAF 124
Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230
            +ID+ GV++ + +N+L +GRSVDE LRL+ A     + G +
Sbjct: 125 VLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDV 166

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 81  DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139
           + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  +++F   N E++  SVDS 
Sbjct: 42  NNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSV 101
Query: 140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ 199
           ++HLAW N P ++GG+G ++  L+SD+   IS +Y V L D    LRGLFIID+NG +R 
Sbjct: 102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNSFALRGLFIIDKNGCVRH 160
Query: 200 ITMNDLPVGRSVDETLRLVQA 220
            T+NDLP+GR+V E LR + +
Sbjct: 161 QTVNDLPIGRNVQEVLRTIDS 181

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 109/159 (68%), Gaps = 4/159 (2%)
Query: 66  LVSKPAPFWQGTAVV-DGQLKE-IKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLE 122
           +V+K AP ++  AV+ + ++ E  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R++
Sbjct: 2   VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V L ++ 
Sbjct: 62  DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDV-LFEEA 120
Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             LRG F+ID+N  +R   +NDLP+GR+ DE LR+V A 
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFVHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFDHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFVCPTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HF H AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFIHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
           +K  PF +  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  ++
Sbjct: 5   TKIKPF-KNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL 63
Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   R 
Sbjct: 64  GVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRA 120
Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            F++D  G+++ I +    +GR   + LR ++A
Sbjct: 121 TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 16/163 (9%)
Query: 72  PFWQGTAVVDGQLKEIKL---SDYY---------GKYLVFFFYPLDFTFVCPTEILAFND 119
           P +Q TA++ G L ++      DY+         GK+ V FF+P DFTFVCPTEI AF+ 
Sbjct: 11  PAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSK 70
Query: 120 RLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS 179
             +EF   + +++  S+DS F H  W     +   L  L  P LSD+  ++S   GV  +
Sbjct: 71  LNDEFEDRDAQILGVSIDSEFAHFQWR---AQHNDLKTLPFPXLSDIKRELSQAAGVLNA 127
Query: 180 DQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           D G   R  FI+D N  ++ ++     VGR+VDE LR++ A  
Sbjct: 128 D-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 169

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 142 YPMELGRLVDEILRIVKAL 160

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 142 YPMELGRLVDEILRIVKAL 160

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 142
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 143 YPMELGRLVDEILRIVKAL 161

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT VC TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R    
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLY 141
Query: 203 NDLPVGRSVDETLRLVQAF 221
               +GR VDE LR+V+A 
Sbjct: 142 YPXELGRLVDEILRIVKAL 160

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 142 YPMELGRLVDEILRIVKAL 160

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 142
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 143 YPMELGRLVDEILRIVKAL 161

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 23  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 82
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R +  
Sbjct: 83  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141
Query: 203 NDLPVGRSVDETLRLVQAF 221
             + +GR VDE LR+V+A 
Sbjct: 142 YPMELGRLVDEILRIVKAL 160

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 86  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           E+  +D  GK+ +  FYP DF+FVCPTE+        E  ++  EV + S D+HF H AW
Sbjct: 23  EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82
Query: 146 -VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204
             N+P     +G ++  ++ D +  IS  + V   + G   RG FIID +GV++ I +N 
Sbjct: 83  HENSP----AVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINA 138
Query: 205 LPVGRSVDETLRLVQA 220
             +GR     +  V+A
Sbjct: 139 DGIGRDASTLINKVKA 154

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
Query: 87  IKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           IKL D+Y   GK+ V F +P DFT V  TE ++F  R E+F ++  +++  SVDS F+H+
Sbjct: 24  IKLPDHYVSQGKWFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI 83
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITM 202
            W     +  G+ ++  P+++D    ++   G+  ++   HT+RG+FI+D  GV+R    
Sbjct: 84  KWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLY 142
Query: 203 NDLPVGRSVDETLRLVQAF 221
               +GR VDE LR+V+A 
Sbjct: 143 YPXELGRLVDEILRIVKAL 161

>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 81  DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140
           D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+Q+N  V+  SVD  F
Sbjct: 17  DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV---YLSDQGHTL--RGLFIIDRNG 195
           ++ A+     KE    KL   +LSD   ++   Y V   + +  G+ L  R +F+ID+ G
Sbjct: 77  SNKAF-----KEH--NKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEG 129
Query: 196 VLRQITMNDLPVGR-SVDETLRLVQAF 221
            +R   ++D P      DE  ++V++ 
Sbjct: 130 KVRYKWVSDDPTKEPPYDEIEKVVKSL 156

>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 79  VVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137
           +VD  LK++K+ SD+ GK +V  FYP  FT V   E+  F D + +F+++N  V+  SVD
Sbjct: 13  LVDTDLKKVKIPSDFKGKVVVLAFYPAAFTSVSTKEMSTFRDSMAKFNEVNAVVIGISVD 72
Query: 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLS---DQGHTL--RGLFIID 192
             F++ A+     KE    K+   ++SD   +    YGV       +G+ L  R +F+ID
Sbjct: 73  PPFSNKAF-----KEQ--NKINFTIVSDFNREAVKAYGVAGELPILKGYVLAKRSVFVID 125
Query: 193 RNGVLRQITMNDLP 206
           +NG++R   +++ P
Sbjct: 126 KNGIVRYKWVSEDP 139

>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 87  IKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           + L  Y G K ++  F+PL FT +C  E+    D L EF   ++  +A SV    TH  W
Sbjct: 21  VTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIW 80
Query: 146 VNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202
                          PLLSD      +S  YGV+    G   RG F++DR+G++R   M
Sbjct: 81  ATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM 132

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 71  APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 129
           A F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNC 66
Query: 130 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH------ 183
           +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +        
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPL 126
Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           T R LF I     ++   +     GR+  E LR++++  
Sbjct: 127 TCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ 165

>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 87  IKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           + L  Y G K ++  F+PL FT +   E+    D L EF   ++  +A SV    TH  W
Sbjct: 28  VTLRGYRGAKNVLLVFFPLAFTGIXQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIW 87
Query: 146 VNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202
                          PLLSD      +S  YGV+    G   RG F++DR+G++R   M
Sbjct: 88  ATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM 139

>pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           V   AP ++G A      ++I LSDY GK+ +V +FYP D T     E  AF D  +   
Sbjct: 4   VGDKAPLFEGIA---DNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLK 60
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP--LLSDLTHKISLDYGVYLSDQGH 183
             +  V+  S D   +H  +     KE    K K+P  L+SD   KI   YG     +G 
Sbjct: 61  DYDVVVIGVSSDDINSHKRF-----KE----KYKLPFILVSDPDKKIRELYGA----KGF 107
Query: 184 TL--RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219
            L  R  F+ID+ G++R I  + +     V+E L+ ++
Sbjct: 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALK 145

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 71  APFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT 129
           A F   TA   G   + +L  Y    + + F +P DFT V  TE+       E+F ++N 
Sbjct: 7   ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVXTTELAELGKMHEDFLKLNC 66
Query: 130 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH------ 183
           +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +        
Sbjct: 67  KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPL 126
Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           T R LF I     ++   +     GR+  E LR++++  
Sbjct: 127 TCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ 165

>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 94  GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 153
           G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 154 GLGKLKIPLLSDLTHKISLDYGVYLSD-QGHTL---RGLFIIDRNGVLRQITMNDLPVGR 209
              +L   LLSD   ++   Y VY  D +G  +   R +FI+  +G +    + D P+  
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNE 145
Query: 210 -SVDETLR 216
              DE +R
Sbjct: 146 PDYDEVVR 153

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 87  IKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           I+  D+ G  + + F +P DFT V  TE+        EF + N +++A S+DS   HLAW
Sbjct: 23  IRFHDFLGDSWGILFSHPRDFTPVXTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAW 82
Query: 146 ---VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH------TLRGLFIIDRNGV 196
              +N    E    KL  P++ D   ++++  G+    +        T R +F+   +  
Sbjct: 83  SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142
Query: 197 LRQITMNDLPVGRSVDETLRLV 218
           L+   +     GR+ DE LR+V
Sbjct: 143 LKLSILYPATTGRNFDEILRVV 164

>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 94  GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEG 153
           G+  V  F+P  F+ VC  E+  F D+  +  + N EV+A SVDS +         +K  
Sbjct: 33  GRPAVLIFFPAAFSPVCTKELCTFRDKXAQLEKANAEVLAISVDSPWCL-------KKFK 85
Query: 154 GLGKLKIPLLSDLTHKISLDYGVYLSD----QGHTLRGLFIIDRNGVLRQITMNDLPVGR 209
              +L   LLSD   ++   Y VY  D    +    R +FI+  +G +    + D P+  
Sbjct: 86  DENRLAFNLLSDYNREVIKLYNVYHEDLKGLKXVAKRAVFIVKPDGTVAYKWVTDNPLNE 145
Query: 210 -SVDETLR 216
              DE +R
Sbjct: 146 PDYDEVVR 153

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 80  VDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
            D  + ++K  D+ G  + V F +P DFT V  TE+        +F +   +++A S D+
Sbjct: 14  ADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDN 73
Query: 139 HFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGH------TLRGLFII 191
              H  W    +   G+ G +  P+++D T ++++  G+   D+        T R +FII
Sbjct: 74  VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFII 133
Query: 192 DRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
             +  L+   +     GR+  E LR++ +  
Sbjct: 134 GPDKKLKLSILYPATTGRNFSEILRVIDSLQ 164

>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 89  LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 148
           LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H ++   
Sbjct: 46  LSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFC-- 103
Query: 149 PRKEGGLGKLKIPLLSD 165
             K+G       PL+SD
Sbjct: 104 -AKQG----FTFPLVSD 115

>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 86  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           +  L  + G +LV +FYP D T  C TE L FN  L EF +   +++  S DS  +H   
Sbjct: 27  QTTLRAHAGHWLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSH--- 83
Query: 146 VNTPRKEGGLGKLKIPLLSD 165
            N   K+G       PL+SD
Sbjct: 84  DNFCAKQG----FAFPLVSD 99

>pdb|2JSY|A Chain A, Solution Structure Of Tpx In The Oxidized State Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           V+   L+E  L+D  GK  +    P   T VC  +   FN+   +   +N   ++A  D 
Sbjct: 29  VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISA--DL 86
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNG 195
            F    W       G  G  K+  LSD         +GVY+ +     R +F++D NG
Sbjct: 87  PFAQARWC------GANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENG 138

>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX Length = 220

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 237 VIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDS 292
           V+   QVTE+T  IL+  G TC  RG   +KGKG + TYF+  +      + N+ S
Sbjct: 165 VLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSNLAS 220

>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 86  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           +  L  + G +LV +FYP D T    TE L FN  L EF +   +++  S DS  +H   
Sbjct: 27  QTTLRAHAGHWLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSH--- 83
Query: 146 VNTPRKEGGLGKLKIPLLSD 165
            N   K+G       PL+SD
Sbjct: 84  DNFSAKQG----FAFPLVSD 99

>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 86  EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145
           +  L  + G +LV +FYP D T    TE L FN  L EF +   +++  S DS  +H   
Sbjct: 27  QTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSH--- 83
Query: 146 VNTPRKEGGLGKLKIPLLSD 165
            N   K+G       PL+SD
Sbjct: 84  DNFCAKQG----FAFPLVSD 99

>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 91  DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 150
           D YGKY + FF+P   T     E + F+   E F +   +VV  S DS       V   +
Sbjct: 21  DLYGKYTILFFFPKAGTSGSTREAVEFSR--ENFEK--AQVVGISRDS-------VEALK 69
Query: 151 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ 199
           +      LK+ LLSD    +   + V   + G T+R  F+IDR G +R+
Sbjct: 70  RFKEKNDLKVTLLSDPEGILHEFFNVL--ENGKTVRSTFLIDRWGFVRK 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	1e-105
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	1e-105
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	1e-104
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	1e-104
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	1e-104
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	1e-104
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	1e-104
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	1e-102
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	1e-102
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	2e-98
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	5e-98
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	9e-98
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	1e-97
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	3e-96
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	7e-96
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	1e-89
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	4e-75
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	2e-73
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	1e-71
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	1e-71
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	1e-63
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	8e-35
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	8e-33
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	2e-28
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	7e-27
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	7e-27
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	2e-24
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	2e-24
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	4e-24
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	1e-23
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	3e-22
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	7e-21
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	2e-20
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	7e-20
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	2e-13
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	4e-11
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	4e-09
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	6e-08
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-07
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-07
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	4e-07
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-06
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	2e-06
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-06
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	3e-06
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	4e-06
2lrt_A	152	Uncharacterized protein; structural genomics, thio	6e-06
3raz_A	151	Thioredoxin-related protein; structural genomics,	8e-06
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	9e-06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	1e-05
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	2e-05
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	2e-05
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-05
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-05
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	5e-05
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	1e-04
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	1e-04
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	4e-04
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	4e-04
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	5e-04
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	5e-04

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score =  304 bits (780), Expect = e-105
 Identities = 97/156 (62%), Positives = 123/156 (78%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 41  LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN 100

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
             N +V+A S DS ++HLAW N  RK GGLG +KIPLL+D   +IS  YGV+  + G+  
Sbjct: 101 SRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 160

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID NG+LRQIT+ND PVGRSVDETLRL+ AF
Sbjct: 161 RGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF 196

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score =  303 bits (777), Expect = e-104
 Identities = 125/156 (80%), Positives = 140/156 (89%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
             S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF 
Sbjct: 20  FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 79

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
            INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct: 80  SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 139

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct: 140 RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score =  304 bits (781), Expect = e-104
 Identities = 126/156 (80%), Positives = 142/156 (91%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
            +SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF 
Sbjct: 63  KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 122

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
            INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct: 123 SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 182

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID  G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct: 183 RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score =  303 bits (779), Expect = e-104
 Identities = 128/156 (82%), Positives = 141/156 (90%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
            +SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF 
Sbjct: 49  KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFR 108

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
            INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTL
Sbjct: 109 AINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL 168

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID  GVLRQITMNDLPVGRSVDETLRLVQAF
Sbjct: 169 RGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score =  303 bits (777), Expect = e-104
 Identities = 107/156 (68%), Positives = 129/156 (82%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
            V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH
Sbjct: 28  AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFH 87

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
            +N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  L
Sbjct: 88  DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 147

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID NGV++ +++NDLPVGRSV+ETLRLV+AF
Sbjct: 148 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score =  301 bits (774), Expect = e-104
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
            V K AP ++ TAVVDG   E+ L  Y GKY+V  F PL FTFV PTEI+AF++  ++F 
Sbjct: 24  QVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFE 83

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           +   +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D  H +S DYGV + ++G  L
Sbjct: 84  EQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVAL 143

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID  GV+R IT+NDLPVGR+VDE LRLV+AF
Sbjct: 144 RGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF 179

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score =  297 bits (764), Expect = e-102
 Identities = 87/156 (55%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
              PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF 
Sbjct: 8   DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFS 67

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
            I  EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G   
Sbjct: 68  DIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAY 127

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RGLFIID    LRQIT+NDLPVGR VDE LRLV+AF
Sbjct: 128 RGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score =  297 bits (762), Expect = e-102
 Identities = 81/157 (51%), Positives = 113/157 (71%), Gaps = 1/157 (0%)

Query: 66  LVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
            ++ PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D  + F
Sbjct: 7   KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRF 66

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            +INTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   D G  
Sbjct: 67  AEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVA 126

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            RG+FIID NG LRQI +ND+P+GR+V+E +RLV+A 
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 163

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score =  286 bits (734), Expect = 2e-98
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L++     ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  
Sbjct: 2   LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++  +V + S D+HFTH AW ++      + K+K  ++ D T  ++ ++     D+G   
Sbjct: 62  KLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLAD 118

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           R  F++D  G+++ I +    +GR   + LR ++A 
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score =  286 bits (734), Expect = 5e-98
 Identities = 70/158 (44%), Positives = 103/158 (65%), Gaps = 3/158 (1%)

Query: 66  LVSKPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEE 123
           LV+K A  +    +  + ++  + LS + G KY    FYPL++TFVCPTEI+ FN  +++
Sbjct: 26  LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKD 85

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
           F   N E++  SVDS ++HLAW N P ++GG+G ++  L+SD+   IS +Y V L D   
Sbjct: 86  FENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNSF 144

Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            LRGLFIID+NG +R  T+NDLP+GR+V E LR + + 
Sbjct: 145 ALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score =  284 bits (730), Expect = 9e-98
 Identities = 71/157 (45%), Positives = 103/157 (65%), Gaps = 3/157 (1%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
               AP ++  AV  D    E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A +  L+ F
Sbjct: 2   FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            + N E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V L ++   
Sbjct: 62  KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVA 120

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           LR   +ID+ GV++ + +N+L +GRSVDE LRL+ A 
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score =  285 bits (731), Expect = 1e-97
 Identities = 75/158 (47%), Positives = 106/158 (67%), Gaps = 3/158 (1%)

Query: 66  LVSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEE 123
            V K APF++  AV  D    E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A +  L+ 
Sbjct: 22  YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDA 81

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
           FH+ N E++  SVDS +THLAW  TP  +GG+G +K  LLSD+T  IS DY V   D   
Sbjct: 82  FHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSV 140

Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           +LR   +ID NG+++ + +N+L +GRSVDE LR++ A 
Sbjct: 141 SLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score =  281 bits (720), Expect = 3e-96
 Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 4/159 (2%)

Query: 66  LVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLE 122
           +V+K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R++
Sbjct: 2   VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   ++ 
Sbjct: 62  DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-EEA 120

Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             LRG F+ID+N  +R   +NDLP+GR+ DE LR+V A 
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score =  279 bits (717), Expect = 7e-96
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 66  LVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           L+      ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E 
Sbjct: 2   LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            ++  EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G  
Sbjct: 62  KKLGVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            RG FIID +GV++ I +N   +GR     +  V+A 
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score =  264 bits (676), Expect = 1e-89
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 66  LVSKPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVCPTE 113
            +    P +Q TA++ G L              I   ++ GK+ V FF+P DFTFVCPTE
Sbjct: 5   TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTE 64

Query: 114 ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173
           I AF+   +EF   + +++  S+DS F H  W     +   L  L  P+LSD+  ++S  
Sbjct: 65  IAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQA 121

Query: 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            GV L+  G   R  FI+D N  ++ ++     VGR+VDE LR++ A 
Sbjct: 122 AGV-LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  228 bits (583), Expect = 4e-75
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 9/163 (5%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
            +    P +   A       + +L  Y    + + F +P DFT VC TE+       E+F
Sbjct: 4   HLGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 61

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH- 183
            ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +   
Sbjct: 62  LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121

Query: 184 -----TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
                T R LF I     ++   +     GR+  E LR++++ 
Sbjct: 122 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  224 bits (574), Expect = 2e-73
 Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 9/160 (5%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLE 122
           L+ +  P  + T         IKL D+Y   GK+ V F +P DFT VC TE ++F  R E
Sbjct: 6   LIGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYE 61

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +F ++  +++  SVDS F+H+ W     +  G+ ++  P+++D    ++   G+  ++  
Sbjct: 62  DFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESA 120

Query: 183 -HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            HT+RG+FI+D  GV+R +    + +GR VDE LR+V+A 
Sbjct: 121 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  219 bits (560), Expect = 1e-71
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           L+   AP ++    V      I+  D+ G  + + F +P DFT VC TE+        EF
Sbjct: 6   LLGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 61

Query: 125 HQINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
            + N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    +
Sbjct: 62  AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121

Query: 182 GH------TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
                   T R +F+   +  L+   +     GR+ DE LR+V + 
Sbjct: 122 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  219 bits (561), Expect = 1e-71
 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
            + +  P ++  + +     ++K  D+ G  + V F +P DFT V  TE+        +F
Sbjct: 4   TLGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDF 59

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGH 183
            +   +++A S D+   H  W    +   G+ G +  P+++D T ++++  G+   D+  
Sbjct: 60  KKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERT 119

Query: 184 ------TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
                 T R +FII  +  L+   +     GR+  E LR++ + 
Sbjct: 120 STGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score =  197 bits (502), Expect = 1e-63
 Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 15/158 (9%)

Query: 67  VSKPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           V   AP F     + D   + + L  Y G K ++  F+PL FT +C  E+    D L EF
Sbjct: 11  VGATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEF 66

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 182
              ++  +A SV    TH  W               PLLSD      +S  YGV+    G
Sbjct: 67  ENDDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 119

Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
              RG F++DR+G++R   M      R        + A
Sbjct: 120 IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 157

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score =  122 bits (309), Expect = 8e-35
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%)

Query: 67  VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           + + AP F     + D +LK++KLS   GK +V  FYP  FT VC  E+  F D + +F+
Sbjct: 6   IGELAPDF----ELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN 61

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH-- 183
           Q+N  V+  SVD  F++ A+            L   +LSD   ++   Y V         
Sbjct: 62  QVNAVVLGISVDPPFSNKAFKE---HNK----LNFTILSDYNREVVKKYNVAWEFPALPG 114

Query: 184 ---TLRGLFIIDRNGVLRQITMNDLPVGRS-VDETLRLVQA 220
                R +F+ID+ G +R   ++D P      DE  ++V++
Sbjct: 115 YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score =  117 bits (296), Expect = 8e-33
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 81  DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +   + + L +    G+  V  F+P  F+ VC  E+  F D++ +  + N EV+A SVDS
Sbjct: 18  NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH----TLRGLFIIDRN 194
            +    + +   +      L   LLSD   ++   Y VY  D         R +FI+  +
Sbjct: 78  PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPD 130

Query: 195 GVLRQITMNDLPVGRS-VDETLRLVQA 220
           G +    + D P+     DE +R    
Sbjct: 131 GTVAYKWVTDNPLNEPDYDEVVREANK 157

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score =  106 bits (267), Expect = 2e-28
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +    L +  L+D+ GK  V    P   T +C T+   FN+ L      NT V+  S+D 
Sbjct: 27  LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
            F    W       G  G     +LSD   H    DY + +++     R +F++D +  +
Sbjct: 85  PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTI 138

Query: 198 R 198
           R
Sbjct: 139 R 139

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score =  102 bits (256), Expect = 7e-27
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           V+D  L ++ L+DY GK  +    P   T VC  +   FN    +       V+  S D 
Sbjct: 31  VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
            F    W          G   +  LSD        +YGV + +     R +F++D +  +
Sbjct: 88  PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKV 141

Query: 198 R 198
            
Sbjct: 142 V 142

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score =  102 bits (256), Expect = 7e-27
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           VV   L+E  +        V    P   T VC TE   FN+ +        +V   S+D 
Sbjct: 32  VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNG 195
            F    +  +           + + SD  ++    YGV + +   +G   R +FIID+ G
Sbjct: 90  PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFIIDKEG 143

Query: 196 VLR 198
            + 
Sbjct: 144 KVA 146

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 96.2 bits (240), Expect = 2e-24
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +  G L  I    + GK ++   +P   T VC T +  F++           V+  S D 
Sbjct: 29  LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDL 85

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNG 195
            F    +       G  G   +   S        DYGV ++D    G   R + +I  +G
Sbjct: 86  PFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADG 139

Query: 196 VLR 198
            + 
Sbjct: 140 NVA 142

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           V+   L+E  L+D  GK  +    P   T VC  +   FN+   +    +  V   S D 
Sbjct: 29  VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
            F    W        G+   K+  LSD         +GVY+ +     R +F++D NG +
Sbjct: 87  PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKV 140

Query: 198 R 198
            
Sbjct: 141 V 141

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +V   L ++ LS + GK  V   +P   T VC   +  FN    E    NT V+  S D 
Sbjct: 63  LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD---QGHTLRGLFIIDRN 194
            F    +          G   +  LS L        YGV +++    G T R + ++D  
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQ 174

Query: 195 GVLR 198
             + 
Sbjct: 175 DNVI 178

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +    NT V+  S D 
Sbjct: 28  LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRN 194
            F    +          G      +S    H +    GV +      G T R + ++D  
Sbjct: 86  PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQ 139

Query: 195 GVLR 198
             + 
Sbjct: 140 NNVL 143

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 85  KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
           ++I LSDY GK+ +V +FYP D T     E  AF D  +     +  V+  S D   +H 
Sbjct: 19  EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78

Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203
            +     K      L   L+SD   KI   YG          R  F+ID+ G++R I  +
Sbjct: 79  RFKE---KYK----LPFILVSDPDKKIRELYGAKGFI-L-PARITFVIDKKGIIRHIYNS 129

Query: 204 DLPVGRSVDETLRLVQA 220
            +     V+E L+ ++ 
Sbjct: 130 QMNPANHVNEALKALKQ 146

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224

 Score = 88.0 bits (218), Expect = 7e-21
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 79  VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
           +VD Q  +  L  +     +               +L    R       + +++  +VDS
Sbjct: 33  LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92

Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD---QGHTLRGLFIIDRN 194
             +     +        G   I LLS L  +     YGV +++    G+T   + + D  
Sbjct: 93  PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAA 146

Query: 195 GVLR 198
            V+ 
Sbjct: 147 NVVH 150

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
            +  L  + G +LV +FYP D T    TE L FN  L EF +   +++  S DS  +H  
Sbjct: 26  TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL--SDQGHTLRGL----FIIDRNGVLR 198
           +     K+G       PL+SD    +   + V    +  G  + G+    F++   G + 
Sbjct: 86  FCA---KQG----FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVV 138

Query: 199 QI 200
           Q 
Sbjct: 139 QA 140

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
               LSDY  ++LV +FYP D T    TE L FN  L +F QIN  V+  S DS  +H +
Sbjct: 42  TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL--SDQGHTLRGL----FIIDRNGVLR 198
           +     K+G       PL+SD    +   + V    +  G  + G+    F+I     + 
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIV 154

Query: 199 QI 200
           + 
Sbjct: 155 EA 156

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 85  KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142
             I L       + +VFF YP   T     +   F D  +E  +    V   S DS  + 
Sbjct: 24  DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82

Query: 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGV 196
             + +   K+     L   LLSD   +     G   +    ++R  FI     +
Sbjct: 83  KKFQS---KQN----LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKL 129

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 242 QVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDS 292
           QVTE+T  IL+  G TC  RG   +KGKG + TYF+  +      + N+ S
Sbjct: 170 QVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSNLAS 220

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLE 122
           + + AP +  T   DG  K++ LS   GK ++     L FT     VC  E+      + 
Sbjct: 9   IGEMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIW 60

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
             H+ N +     +D        +   +  G    +  PL  D    I   Y +  +   
Sbjct: 61  LKHKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDAGIT 116

Query: 183 HTLRGLFIIDRNGVLRQIT 201
                  +IDR G + ++T
Sbjct: 117 RN----VLIDREGKIVKLT 131

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 27/157 (17%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLE 122
               AP   G  +  G    + L+D+ GKY++     +DF F     C  E         
Sbjct: 5   TGSVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYN 56

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
            F      +   S D       W     +E      ++ L  D    +   Y +      
Sbjct: 57  AFKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI------ 107

Query: 183 HTLRGL---FIIDRNGVLRQITMNDLPVGRSVDETLR 216
               G     ++D  G +    +    +  +V++ + 
Sbjct: 108 ---VGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 33/142 (23%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
               AP +       G    +KLSD  G  +      LDF  ++ C          N   
Sbjct: 5   KGDKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQ 54

Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
            ++     +VVA ++D+       +    +       +  +  D   +    YGV     
Sbjct: 55  AKYKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGV----- 103

Query: 182 GHTLRGL---FIIDRNGVLRQI 200
               +G+   F+IDRNG +   
Sbjct: 104 ----KGMPTSFLIDRNGKVLLQ 121

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 32/140 (22%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
             AP +      +G  K I+LSD  GK +      L+F  T+ C     E     ++ + 
Sbjct: 4   SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
           F     E+VA +V    + +A  N  +  G    +  P++ D   ++   Y V       
Sbjct: 55  FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDV------- 101

Query: 184 TLRGL---FIIDRNGVLRQI 200
               L   F+I+  G + ++
Sbjct: 102 --SPLPTTFLINPEGKVVKV 119

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 68  SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 122
           +  A  +    + +G  K + L+D  GKY+      +D   T+ C     E+ A  +  E
Sbjct: 7   NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           ++   +   V+ S D      AW N   K+   G   I L           Y +      
Sbjct: 58  KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI------ 106

Query: 183 HTLRGL---FIIDRNGVLRQITM 202
               G+    ++DR+G +    M
Sbjct: 107 ---NGIPRFILLDRDGKIISANM 126

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 37/143 (25%)

Query: 67  VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDR 120
               AP F     +     +   L+ Y GK ++     ++F  ++ CP    E+ + +  
Sbjct: 17  TGALAPNF----KLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRL 66

Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
           ++ F + +  V+A +V+       +    R+      +    LSD T ++   YG     
Sbjct: 67  VKSFPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGA---- 113

Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
                  L   FI+DR G++RQ 
Sbjct: 114 -----NRLPDTFIVDRKGIIRQR 131

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 32/130 (24%)

Query: 80  VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEEFHQINTEVVAA 134
           +DG   +       GK  V     L F   + CPT   E       + +    + EV   
Sbjct: 13  LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEA----PVVGQVAASHPEVTFV 60

Query: 135 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL---FII 191
            V       A      K           L+D    +  ++GV                 +
Sbjct: 61  GVAGLDQVPAMQEFVNKYPVKT---FTQLADTDGSVWANFGVT---------QQPAYAFV 108

Query: 192 DRNGVLRQIT 201
           D +G +  + 
Sbjct: 109 DPHGNVDVVR 118

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 26/125 (20%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEEFHQINTEVVAASVDSH 139
           K  +LSDY GK +      L F  ++ C      +   ++  +E       +   S    
Sbjct: 13  KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65

Query: 140 FTHLAWVNTPRKE-GGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNG 195
                     +    GL    +P+L D + K+   YGV         R       ID+ G
Sbjct: 66  -KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGV---------RSYPTQAFIDKEG 115

Query: 196 VLRQI 200
            L + 
Sbjct: 116 KLVKT 120

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 33/165 (20%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDR 120
           L+ K AP    T    G      L D   KY + FF+            C  E     D 
Sbjct: 6   LLGKKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDW 56

Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVYL 178
             +      +V AA+++       W+   R +   G      + D  +     + Y +  
Sbjct: 57  WLKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDI-- 109

Query: 179 SDQGHTLRGL---FIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
                        +++D+N V+    +    +   + +  + ++ 
Sbjct: 110 -------YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 31/143 (21%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDR 120
           L SK AP +    +  G  K +  +D  GK  +     ++F     CP    E+      
Sbjct: 3   LDSKTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIKT 53

Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
             ++   N +V+A +        +     +  G    L   ++ D    +   +G     
Sbjct: 54  ANDYKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT---- 104

Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
                +      +I + G + + 
Sbjct: 105 -----QVYPTSVLIGKKGEILKT 122

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140
               L+D  GK ++     +DFT     +     LA  +   ++     E+   S+D   
Sbjct: 26  NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-- 78

Query: 141 THLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGHTLRGL---FIIDRN 194
               W  +         L    + D           Y V           L   F+++RN
Sbjct: 79  DEHFWKTSAD------NLPWVCVRDANGAYSSYISLYNV---------TNLPSVFLVNRN 123

Query: 195 GVLRQITMNDLPVGRSVDETLR 216
             L     N     + +DE ++
Sbjct: 124 NELSARGEN----IKDLDEAIK 141

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 29/142 (20%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
           +S  A    G    D       L        +     ++   T+ C     E+ A +   
Sbjct: 1   MSLSADELAGWK--DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWY 50

Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
           +   + + ++V  ++D+      ++           +  P+              Y    
Sbjct: 51  KAQKKGSVDMVGIALDTSDNIGNFLKQ-------TPVSYPIWRYTGANSRNFMKTY---- 99

Query: 182 GHTLRGL---FIIDRNGVLRQI 200
           G+T+  L    +       RQ 
Sbjct: 100 GNTVGVLPFTVVEAPKCGYRQT 121

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Length = 204

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 242 QVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFI 277
           QV ++  + L+D       RG   +KGKG++ T+++
Sbjct: 148 QVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYL 182

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/140 (15%), Positives = 33/140 (23%), Gaps = 34/140 (24%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
                +  T +  G       +   GK  V     L F   + CP    E       L +
Sbjct: 2   DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEA----PSLSQ 48

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
               N  V    + +     A  +   K      L    L+D    I   Y V       
Sbjct: 49  VAAANPAVTFVGIATRADVGAMQSFVSKYN----LNFTNLNDADGVIWARYNV------- 97

Query: 184 TLRGL---FIIDRNGVLRQI 200
                        +G    +
Sbjct: 98  --PWQPAFVFYRADGTSTFV 115

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 27/145 (18%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFT----FVCPTEILAFNDRLE 122
               AP  +     D    +    +  G+Y +     L+F            +   + + 
Sbjct: 9   PGDLAPRIEFLGN-DA---KASFHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVN 59

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +F      + + S+D       +  T + +      +         ++   Y +      
Sbjct: 60  KFGPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL------ 111

Query: 183 HTLRGL---FIIDRNGVLRQITMND 204
              R     F+I+  GV+    +  
Sbjct: 112 ---RKGFKNFLINDEGVIIAANVTP 133

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 69  KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLE 122
            PAP F     +     + +KLSD  G+ ++     ++F  T+ CP    EI +      
Sbjct: 6   NPAPDF----TLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
                   ++  S+D     +A     RK G      +P+L D   ++   YG       
Sbjct: 56  AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT------ 104

Query: 183 HTLRGL---FIIDRNGVLRQI 200
               G+   F+IDR+GV+ + 
Sbjct: 105 ---TGVPETFVIDRHGVILKK 122

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 40/154 (25%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
           V +    +  T + DG  + I L++  G  ++     L F   + CP         +   
Sbjct: 13  VLEREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLT 63

Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLG------------KLKIPLLSDLTHK 169
           E++ +I   V+A    +     A                             ++      
Sbjct: 64  EKYREI--SVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGS 121

Query: 170 ISLDYGVYLSDQGHTLRGL---FIIDRNGVLRQI 200
           +   + V         R +    I+D++  +   
Sbjct: 122 LVEKFNV---------RSIDYIVIMDKSSNVLYA 146

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/143 (10%), Positives = 45/143 (31%), Gaps = 26/143 (18%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDR 120
             + P      + +     +   +     K  +     + F  ++ CP    E+      
Sbjct: 13  TATVPHT---MSTMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEKW 63

Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
            ++    +  ++  +              +   GL   K+P+++D    I+ +  +    
Sbjct: 64  AQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI---- 119

Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
                       +I ++G +++I
Sbjct: 120 -----SVYPSWALIGKDGDVQRI 137

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Length = 190

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 242 QVTEKTCDILED-HGVTCELRGRTFIKGKGLITTYF 276
            ++E     L          RG   +KGKG + TY 
Sbjct: 148 HISEACYCCLRSKERFEIRERGNITVKGKGTMRTYL 183

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
              P     A  D   K  KLSD+ GK L+     ++   T+ C     E+ A ++   +
Sbjct: 38  LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
               N EVVA ++D+         T  KE  L +L     +D   K+  D          
Sbjct: 89  LSGPNFEVVAINIDT--RDPEKPKTFLKEANLTRL--GYFNDQKAKVFQDLKAIGR---- 140

Query: 184 TLRGL---FIIDRNGVLR 198
              G+    ++D  G   
Sbjct: 141 -ALGMPTSVLVDPQGCEI 157

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Length = 219

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 5/41 (12%)

Query: 242 QVTEKTCDILED-----HGVTCELRGRTFIKGKGLITTYFI 277
            V+E T   L            E RG   +KGK      + 
Sbjct: 156 NVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWF 196

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 30/140 (21%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 123
                +    + +G  ++I + +  G+  +     L F  ++ CP    E+  F    + 
Sbjct: 13  AVPAVFLMKTI-EG--EDISIPNK-GQKTI-----LHFWTSW-CPPCKKELPQFQSFYDA 62

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
               + ++V  ++ +   +   V    K   L     P++ D   ++  +Y +       
Sbjct: 63  HPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL---TFPIVLDSKGELMKEYHI------- 112

Query: 184 TLRGL---FIIDRNGVLRQI 200
               +   F+++  G + + 
Sbjct: 113 --ITIPTSFLLNEKGEIEKT 130

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 39/157 (24%)

Query: 69  KPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 122
           +  P   G ++  +G   +I LSD+  + ++     L+    + C    +E        E
Sbjct: 35  QQLPDIGGDSLMEEG--TQINLSDFENQVVI-----LNAWGQW-CAPCRSESDDLQIIHE 86

Query: 123 EFH------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 176
           E             V+  +V  + +     +     G    L  P + D     +   G 
Sbjct: 87  ELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPPFMTAASLGG 141

Query: 177 YLSDQGHTLRGL---FIIDRNG-----VLRQITMNDL 205
                      +    ++D+        LR++T  D+
Sbjct: 142 V------PASVIPTTIVLDKQHRPAAVFLREVTSKDV 172

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 31/141 (21%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFF----YPLDFTFVCPTEILAFNDRL 121
              +P P +       G  + +  +      ++ F+            C  E    + R+
Sbjct: 6   KPGEPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLH-RV 55

Query: 122 EEFHQINTEVVAASV-DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
            E   +   V++    D+    L ++    K        +    D  H+++  + V    
Sbjct: 56  AEETGVPFYVISREPRDTREVVLEYM----KTYPRFIPLLASDRDRPHEVAARFKVL--- 108

Query: 181 QGHTLRGL---FIIDRNGVLR 198
                 G    F++DR G + 
Sbjct: 109 ------GQPWTFVVDREGKVV 123

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 36/149 (24%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFT----FVCPTEILAFNDR 120
           V K AP++       G  +++  S   +  +YL+     L+F        P         
Sbjct: 7   VGKSAPYFSLPNE-KG--EKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRL 58

Query: 121 LEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGV 176
            +E+ +  N  ++  S+D      AW    +K+     L    + D T    + +  Y +
Sbjct: 59  NKEYKKNKNFAMLGISLDI--DREAWETAIKKDT----LSWDQVCDFTGLSSETAKQYAI 112

Query: 177 YLSDQGHTLRGL---FIIDRNGVLRQITM 202
                      L    ++   G +    +
Sbjct: 113 ---------LTLPTNILLSPTGKILARDI 132

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 37/145 (25%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 123
            PAP + G  V DG  K    +   GK  +     ++F  T+ CP    EI       + 
Sbjct: 12  TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62

Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD-----LTHKISLDYGVYL 178
           +       V  +V+         N  + +G    +  P++             +D G+  
Sbjct: 63  WASRGFTFVGIAVNE--QLPNVKNYMKTQG----IIYPVMMATPELIRAFNGYIDGGI-- 114

Query: 179 SDQGHTLRGL---FIIDRNGVLRQI 200
                   G+   F+ID +G +  +
Sbjct: 115 -------TGIPTSFVIDASGNVSGV 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	100.0
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	100.0
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	100.0
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	100.0
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	100.0
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	100.0
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.98
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.97
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.97
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.97
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.97
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.97
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.97
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.97
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.97
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.97
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.97
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.97
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.97
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.97
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.97
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.97
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.97
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.97
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.97
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.96
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.96
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.96
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.96
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.96
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.96
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.96
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.96
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.96
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.96
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.96
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.96
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.95
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.95
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.95
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.95
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.95
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.95
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.95
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.94
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.94
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.93
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.93
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.93
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.93
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.93
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.93
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.93
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.92
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.92
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.92
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.92
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.92
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.91
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.91
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.91
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.91
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.91
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.91
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.91
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.91
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.91
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.91
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.91
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.91
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.91
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.9
3me7_A	170	Putative uncharacterized protein; electron transfe	99.9
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.9
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.9
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.9
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.9
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.9
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.9
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.9
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.9
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.9
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.9
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.89
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.89
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.89
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.89
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.89
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.89
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.89
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.89
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.89
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.81
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.88
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.88
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.87
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.87
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.86
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.86
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.85
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.84
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.83
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.83
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.83
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.68
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.67
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.49
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.48
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.42
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.32
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.3
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.27
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.25
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.19
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.18
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.15
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.1
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.09
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.08
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.07
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.06
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.05
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.05
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.05
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.05
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.03
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.02
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.02
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.01
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.0
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.0
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.99
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.99
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.99
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.98
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.98
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.97
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.97
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.96
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.96
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.95
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.95
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.95
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.95
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.95
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.95
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.94
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.94
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.93
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.93
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.93
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.92
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.92
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.92
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.92
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.92
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.91
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.91
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.9
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.9
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.9
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.9
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.89
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.89
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.4
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.88
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.86
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.84
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.84
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.82
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.82
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.81
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.79
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.76
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.76
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.76
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.73
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.71
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.7
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.68
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.67
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.67
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.66
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.64
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.64
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.61
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.6
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.6
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.59
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.59
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.57
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.93
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.52
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.52
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.51
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.48
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.44
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.41
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.4
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.4
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.38
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.37
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.3
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.29
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.26
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.23
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.21
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.18
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.14
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.1
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.1
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.1
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.08
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	98.06
1y10_A	407	Hypothetical protein RV1264/MT1302; adenylyl cycla	98.03
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.02
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.01
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	98.01
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.94
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.92
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.84
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.84
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.77
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	97.77
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.69
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.63
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.63
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.55
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.54
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.49
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.43
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.39
3mr7_A	189	Adenylate/guanylate cyclase/hydrolase, alpha/beta	97.29
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.26
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.24
1fx2_A	235	Receptor-type adenylate cyclase gresag 4.1; CAMP,	97.21
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.12
1ybt_A	184	Hydrolase, alpha/beta hydrolase fold family; cycla	97.09
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	97.04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.01
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	96.89
1ttz_A	87	Conserved hypothetical protein; structural genomic	96.83
3uvj_A	225	Guanylate cyclase soluble subunit alpha-3; nitric	96.7
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	96.69
1azs_A	220	VC1; complex (lyase/hydrolase), hydrolase, signal	96.6
2w01_A	208	Adenylate cyclase; guanylyl cyclase, class III nuc	96.59
1wc3_A	219	Adenylate cyclase; soluble adenylyl cyclase, CAMP	96.51
3r5g_A	198	CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas	96.5
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.44
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	96.41
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	96.38
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.04
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.55
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.54
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	95.53
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	95.34
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.21
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	94.92
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.7
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	93.86
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	93.1
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	93.02
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	93.0
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	92.85
1kte_A	105	Thioltransferase; redox-active center, electron tr	92.23
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	91.71
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	91.26
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	91.17
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	90.99
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	90.9
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	90.73
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	90.33
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	89.41
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	88.89
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	88.13
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	87.73
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	87.69
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	87.33
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	87.22
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	87.08
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	86.81
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	86.66
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	86.62
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	85.41
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	85.01
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	84.94
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	84.84
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	82.5
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	82.13
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	80.36

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-38  Score=269.66  Aligned_cols=169  Identities=53%  Similarity=0.915  Sum_probs=156.7

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      .+.+++|++||||+++++.|++|++++|+||+||+|||+|||+.|||+|+.|++.|++.+++|+++|++||+||+|+.+.
T Consensus        20 ~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~s   99 (216)
T 3sbc_A           20 HMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYS   99 (216)
T ss_dssp             --CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHH
T ss_pred             cchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhh
Confidence            34689999999999998878899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+|.+..+...+++.++||+++|++++++++||+..+..|.+.|++||||++|+|+++..++...+++.+|+++.|++|
T Consensus       100 h~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          100 LLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            99999998888777789999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             cCCCCCCcc
Q psy16151        222 HDPLRTGAI  230 (299)
Q Consensus       222 ~~~~~g~~v  230 (299)
                      |.....+.+
T Consensus       180 Q~~~~~~~~  188 (216)
T 3sbc_A          180 QWTDKNGTV  188 (216)
T ss_dssp             HHHHHHCCB
T ss_pred             hhHhhcCCC
Confidence            965553333

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=100.00  E-value=6.5e-36  Score=257.80  Aligned_cols=167  Identities=51%  Similarity=0.942  Sum_probs=152.4

Q ss_pred             ccCCCCCCCCcEEeee-eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~-~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+++|++||||+++++ .|++|+.++|+||+||||||+|||+.|||+|+.|+..|++++++|+++|++||+||+|+.+++
T Consensus        25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh  104 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAH  104 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhH
Confidence            5789999999997753 377899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+|.+..+...+++.++||+++|++++++++||+..+..|.+.|++||||++|+|++++.+....+++.+++++.|++||
T Consensus       105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ  184 (219)
T 3tue_A          105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQ  184 (219)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence            99998877776777899999999999999999999887888899999999999999999999999999999999999998


Q ss_pred             CCCCCCcc
Q psy16151        223 DPLRTGAI  230 (299)
Q Consensus       223 ~~~~g~~v  230 (299)
                      .....+.+
T Consensus       185 ~~~~~~~~  192 (219)
T 3tue_A          185 FVEKHGEV  192 (219)
T ss_dssp             HHHHC---
T ss_pred             hHHhcCCC
Confidence            65544433

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=100.00  E-value=3.5e-34  Score=235.99  Aligned_cols=149  Identities=32%  Similarity=0.525  Sum_probs=128.3

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .++++|++||+|+|+   |.+|++++|+||+||++||+||+++|||+|+.++|.|+++++++++.|+.+++||.|+++.+
T Consensus         2 ~~l~vG~~aPdF~l~---~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~   78 (157)
T 4g2e_A            2 HMVEIGELAPDFELP---DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSN   78 (157)
T ss_dssp             CCCCTTSBCCCCEEE---BTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHH
T ss_pred             CcCCCCCCCcCeEeE---CCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHH
Confidence            368999999999998   67999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC-----CceeEEEEEeCCCcEEEEEeccCCCC-CCHHHHHH
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-----HTLRGLFIIDRNGVLRQITMNDLPVG-RSVDETLR  216 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g-----~~~p~~~lID~dG~I~~~~~~~~~~g-~~~~evl~  216 (299)
                      ++|.+++       +++||+++|++++++++||+.....+     ...|++||||++|+|++++.+....+ .+.+++++
T Consensus        79 ~~~~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~  151 (157)
T 4g2e_A           79 KAFKEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEK  151 (157)
T ss_dssp             HHHHHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHH
T ss_pred             HHHHHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHH
Confidence            9999876       88999999999999999999755432     25689999999999999987655443 47899999


Q ss_pred             HHhhc
Q psy16151        217 LVQAF  221 (299)
Q Consensus       217 ~l~~L  221 (299)
                      .+++|
T Consensus       152 ~l~~L  156 (157)
T 4g2e_A          152 VVKSL  156 (157)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99887

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=100.00  E-value=1.4e-33  Score=250.18  Aligned_cols=164  Identities=77%  Similarity=1.302  Sum_probs=151.1

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+.+|+++|+|+|+++.|.+|++++|+||+||++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus        58 ~~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~  137 (254)
T 3tjj_A           58 HLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF  137 (254)
T ss_dssp             -CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHH
T ss_pred             cccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHH
Confidence            34678899999999999877888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .+.+|++.+++++++++++||++.|+++++++.||+.....|...|++||||++|+|++++.++...+++.+++++.|++
T Consensus       138 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          138 THLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            99999999878777778999999999999999999987666667899999999999999998888889999999999999


Q ss_pred             ccCC
Q psy16151        221 FHDP  224 (299)
Q Consensus       221 L~~~  224 (299)
                      ++..
T Consensus       218 lq~~  221 (254)
T 3tjj_A          218 FQYT  221 (254)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            8754

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=100.00  E-value=3e-33  Score=246.10  Aligned_cols=165  Identities=78%  Similarity=1.263  Sum_probs=151.0

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      ..++.+.+|+++|+|+|+++.|++|++++|+||+||++||+||+++|||+|+.++|.|++++++|+++|++||+||+|++
T Consensus        43 ~~~~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~  122 (240)
T 3qpm_A           43 LHLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQ  122 (240)
T ss_dssp             CEECSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCH
T ss_pred             cccCcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            34567899999999999987788889999999999999999998899999999999999999999999999999999999


Q ss_pred             HhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +...+|.+.++++.++++++||+++|++++++++||+.....|...|++||||++|+|++++.++...+++.+++++.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~  202 (240)
T 3qpm_A          123 FTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQ  202 (240)
T ss_dssp             HHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            99999999987777666899999999999999999998766666789999999999999999888888889999999999


Q ss_pred             hccCC
Q psy16151        220 AFHDP  224 (299)
Q Consensus       220 ~L~~~  224 (299)
                      +++..
T Consensus       203 ~lq~~  207 (240)
T 3qpm_A          203 AFQYT  207 (240)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            98754

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=100.00  E-value=4.8e-34  Score=237.00  Aligned_cols=150  Identities=26%  Similarity=0.445  Sum_probs=133.6

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCcc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      .++++|++||+|+|+   |.+|++++|+|+  +||++||+||+++|||+|+.+++.|++++++|+++|+.+++||.|+++
T Consensus         3 gml~vG~~aPdF~l~---~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~   79 (164)
T 4gqc_A            3 GLVELGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPW   79 (164)
T ss_dssp             -CCCTTSBCCCCEEE---BTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHH
T ss_pred             CcccCCCCCcCcEeE---CCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHH
Confidence            368999999999998   679999999999  899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----CCceeEEEEEeCCCcEEEEEeccCCCC-CCHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLRGLFIIDRNGVLRQITMNDLPVG-RSVDETL  215 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g~~~p~~~lID~dG~I~~~~~~~~~~g-~~~~evl  215 (299)
                      .+++|.+.+       +++||+++|++++++++||+.....    +.+.|++||||++|+|++++.+....+ .+.++++
T Consensus        80 ~~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil  152 (164)
T 4gqc_A           80 CLKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVV  152 (164)
T ss_dssp             HHHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHH
T ss_pred             HHHHHHHhc-------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHH
Confidence            999999876       8999999999999999999975432    235689999999999999987655444 4789999


Q ss_pred             HHHhhcc
Q psy16151        216 RLVQAFH  222 (299)
Q Consensus       216 ~~l~~L~  222 (299)
                      +.++.|.
T Consensus       153 ~~l~~l~  159 (164)
T 4gqc_A          153 REANKIA  159 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988763

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.98  E-value=2.5e-32  Score=235.64  Aligned_cols=162  Identities=77%  Similarity=1.299  Sum_probs=142.7

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+++++.+++|++++|++|+||++||+||+++|||+|+.++|.|++++++|+++|++||+||+|+++.
T Consensus        16 ~~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~   95 (211)
T 2pn8_A           16 ENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFT   95 (211)
T ss_dssp             ---CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            34688999999999996546678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++|.+.++++.++.+++||++.|+++++++.||+.....|...|++||||++|+|++++.+....+++.+++++.++++
T Consensus        96 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A           96 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99999987666555578999999999999999999755445568999999999999999977767778899999999988


Q ss_pred             cC
Q psy16151        222 HD  223 (299)
Q Consensus       222 ~~  223 (299)
                      +.
T Consensus       176 ~~  177 (211)
T 2pn8_A          176 QY  177 (211)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.97  E-value=7.3e-32  Score=234.45  Aligned_cols=177  Identities=55%  Similarity=0.930  Sum_probs=152.6

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+|+++.|.+|++++|++++||++||+||+++||++|+.++|.|++++++|+++|++||+||+|++++
T Consensus        37 ~~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~  116 (222)
T 3ztl_A           37 TMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS  116 (222)
T ss_dssp             ---CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            34689999999999997667788999999999999999999779999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|.+.++++.++.+++||++.|++..+++.||+.....|...|++||||++|+|++++.+........+++++.++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99999998777666689999999999999999999866666678999999999999999987777777899999999988


Q ss_pred             cCCCCCCccccccceeccceech
Q psy16151        222 HDPLRTGAINGLSLLVIGLFQVT  244 (299)
Q Consensus       222 ~~~~~g~~vn~ast~~~~~i~~s  244 (299)
                      +..      ...+.+++.+|...
T Consensus       197 ~~~------~~~~~~c~~~w~~~  213 (222)
T 3ztl_A          197 QFV------EKHGEVCPVNWKRG  213 (222)
T ss_dssp             HHH------HHHSCBBCTTCCTT
T ss_pred             hcc------cccCccCCcCcCCC
Confidence            643      23345555555543

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.97  E-value=5.9e-31  Score=228.46  Aligned_cols=163  Identities=66%  Similarity=1.111  Sum_probs=146.4

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+++++.+.+|++++|++++||++||+||+++|||+|+.+++.|.+++++|+++|++||+||+|+.+.
T Consensus        24 ~~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~  103 (220)
T 1zye_A           24 DPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFS  103 (220)
T ss_dssp             ---CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            34688999999999997767789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|.+.+++..++.+++||++.|.+.++++.||+.....|...|++||||++|+|++++.+....+++.+++++.++++
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          104 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            99999998776666678999999999999999999865556678999999999999999887777788999999999998


Q ss_pred             cCC
Q psy16151        222 HDP  224 (299)
Q Consensus       222 ~~~  224 (299)
                      +..
T Consensus       184 ~~~  186 (220)
T 1zye_A          184 QFV  186 (220)
T ss_dssp             HHT
T ss_pred             hhh
Confidence            754

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.97  E-value=2.5e-31  Score=231.48  Aligned_cols=191  Identities=25%  Similarity=0.345  Sum_probs=155.2

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+.+|+.+|+|+++   +.+| +++|+|++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus         4 ~l~~G~~aP~F~l~---~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~   79 (224)
T 1prx_A            4 GLLLGDVAPNFEAN---TTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDH   79 (224)
T ss_dssp             -CCTTCBCCCCEEE---ETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred             cCCCcCCCCCcEEe---cCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            57899999999998   5588 9999999998 88998888999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCC---CccceeeeecCchHHHHHhCCcccCC------CCceeEEEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151        143 LAWVNTPRKEGGL---GKLKIPLLSDLTHKISLDYGVYLSDQ------GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDE  213 (299)
Q Consensus       143 ~~~~~~~~~~~~~---~~~~~p~l~D~~~~~~~~~gv~~~~~------g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~e  213 (299)
                      .+|.+.++++.++   .+++||++.|++++++++||+.....      ....|++||||++|+|++++.++...+++.++
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~e  159 (224)
T 1prx_A           80 LAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDE  159 (224)
T ss_dssp             HHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHH
T ss_pred             HHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence            9999886554332   37899999999999999999975421      23579999999999999999887778889999


Q ss_pred             HHHHHhhccCCCCC---Ccccc-ccceeccceechHHHHHHHhhcCceE
Q psy16151        214 TLRLVQAFHDPLRT---GAING-LSLLVIGLFQVTEKTCDILEDHGVTC  258 (299)
Q Consensus       214 vl~~l~~L~~~~~g---~~vn~-ast~~~~~i~~s~~~~~~L~~~~~~~  258 (299)
                      +++.+++|+.....   .++|| +...+.-...++++.++.+...+++|
T Consensus       160 il~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~~~~~  208 (224)
T 1prx_A          160 ILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFT  208 (224)
T ss_dssp             HHHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHhhccCCcCCCCCCCCCCceEeCCCCCHHHHHHhhccCcee
Confidence            99999999865432   22233 34444433445677677766556655

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.97  E-value=9.7e-31  Score=227.33  Aligned_cols=160  Identities=43%  Similarity=0.808  Sum_probs=138.4

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCC--ceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G--~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      |+.+.+|+++|+|+|++. ..+|  ++++|+++ +||++||+||+++|||+|+.++|.|++++++|+++|++||+||+|+
T Consensus        22 M~~l~~G~~aP~F~l~~~-~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~  100 (221)
T 2c0d_A           22 MKLSLVTKKAYNFTAQGL-NKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDS  100 (221)
T ss_dssp             ----CTTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             cccCCCCCCCCCeEEecc-ccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            445889999999999843 1278  89999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      ++..++|.+.+.++.++.+++||++.|+++++++.||+. ...|...|++||||++|+|++++.+....+.+.+++++.+
T Consensus       101 ~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l  179 (221)
T 2c0d_A          101 VYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTI  179 (221)
T ss_dssp             HHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence            999999999876555555689999999999999999997 4445567999999999999999877666677899999999


Q ss_pred             hhccC
Q psy16151        219 QAFHD  223 (299)
Q Consensus       219 ~~L~~  223 (299)
                      ++|+.
T Consensus       180 ~~L~~  184 (221)
T 2c0d_A          180 DSIIH  184 (221)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98864

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.97  E-value=1.4e-31  Score=234.34  Aligned_cols=186  Identities=21%  Similarity=0.308  Sum_probs=151.1

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+.+|+.+|+|+++   +.+| +++|+||+|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus         2 ~l~iG~~aPdF~l~---~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~   77 (233)
T 2v2g_A            2 GITLGEVFPNFEAD---STIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADH   77 (233)
T ss_dssp             CCCTTCBCCCCEEE---ETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCCCcEEe---cCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHH
Confidence            47899999999998   5578 8999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCC-ccceeeeecCchHHHHHhCCcccC----CC--CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        143 LAWVNTPRKEGGLG-KLKIPLLSDLTHKISLDYGVYLSD----QG--HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       143 ~~~~~~~~~~~~~~-~~~~p~l~D~~~~~~~~~gv~~~~----~g--~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      .+|.+.+++..+.+ +++||+++|++++++++||+....    .|  ...|++||||++|+|++++.++...+++.++++
T Consensus        78 ~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil  157 (233)
T 2v2g_A           78 KEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEIL  157 (233)
T ss_dssp             HHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred             HHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence            99998654322211 578999999999999999997432    11  357999999999999999988888888999999


Q ss_pred             HHHhhccCCCC---CCcccc-ccceeccceechHHHHHHHhh
Q psy16151        216 RLVQAFHDPLR---TGAING-LSLLVIGLFQVTEKTCDILED  253 (299)
Q Consensus       216 ~~l~~L~~~~~---g~~vn~-ast~~~~~i~~s~~~~~~L~~  253 (299)
                      +.|++|+....   .-++|| +...+.-..-++++.++.+.+
T Consensus       158 r~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~  199 (233)
T 2v2g_A          158 RVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKTLFP  199 (233)
T ss_dssp             HHHHHHHHHHHSSEEBCTTCCTTSCEEECTTSCHHHHHHHCT
T ss_pred             HHHHHHHhhccCCccCCCCcCcCCceEeCCCCCHHHHHHhcC
Confidence            99999986543   222333 455554344456666666554

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.97  E-value=5.6e-31  Score=220.42  Aligned_cols=150  Identities=21%  Similarity=0.318  Sum_probs=132.3

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCch-hhHHHHHHHHHHHhhcCcEEEE-EeCCC
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTEVVA-ASVDS  138 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~~~~~~~gv~vi~-Vs~d~  138 (299)
                      ..++++|+++|+|+|+.  +.+|++++|+| ++||++||+||+++|||+|+ .|+|.|++++++|+++|++||+ ||.|+
T Consensus        12 ~~~~~vG~~aPdf~l~~--~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~   89 (173)
T 3mng_A           12 SAPIKVGDAIPAVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVND   89 (173)
T ss_dssp             -CCCCTTCBCCCCEEEC--SSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCCCCCCCCCeEeee--CCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            34688999999999971  45899999999 59999999999999999999 5999999999999999999997 99999


Q ss_pred             HHhHHHHhhcccccCCCCccc--eeeeecCchHHHHHhCCcccCC-----C--CceeEEEEEeCCCcEEEEEeccCCCCC
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQ-----G--HTLRGLFIIDRNGVLRQITMNDLPVGR  209 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~~gv~~~~~-----g--~~~p~~~lID~dG~I~~~~~~~~~~g~  209 (299)
                      ++.+++|.++.       +++  ||+++|++++++++||+.....     |  ...|++|||| ||+|++++.++...++
T Consensus        90 ~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~  161 (173)
T 3mng_A           90 AFVTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGL  161 (173)
T ss_dssp             HHHHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCS
T ss_pred             HHHHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCc
Confidence            99999999987       666  9999999999999999986532     2  3679999999 9999999998888888


Q ss_pred             CHHHHHHHHhhc
Q psy16151        210 SVDETLRLVQAF  221 (299)
Q Consensus       210 ~~~evl~~l~~L  221 (299)
                      +..+..+.|++|
T Consensus       162 ~~~~~~~vl~~l  173 (173)
T 3mng_A          162 TCSLAPNIISQL  173 (173)
T ss_dssp             STTSHHHHHHHC
T ss_pred             chHHHHHHHHhC
Confidence            888877777654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.97  E-value=7.7e-31  Score=216.05  Aligned_cols=152  Identities=24%  Similarity=0.333  Sum_probs=134.5

Q ss_pred             cccccCCCCCCCCcE--EeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         61 FICFKLVSKPAPFWQ--GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~--L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +++.+++|+++|+|+  |+   +.+|++++|++++||++||+||+++|||+|+.+++.|++++++|+++|++||+||.|+
T Consensus         3 ~m~~l~~G~~~P~f~~~l~---~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~   79 (163)
T 3gkn_A            3 AMTDAVLELPAATFDLPLS---LSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDS   79 (163)
T ss_dssp             -CCCCCCCCCGGGGGCCEE---CSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccccccCCcCCCcccccc---CCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            345689999999999  98   6799999999999999999999779999999999999999999999999999999999


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--CC----ceeEEEEEeCCCcEEEEEeccCCCCCCHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--GH----TLRGLFIIDRNGVLRQITMNDLPVGRSVD  212 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g~----~~p~~~lID~dG~I~~~~~~~~~~g~~~~  212 (299)
                      ++..++|.+.+       +++||++.|+++++++.||+.....  |.    ..|++||||++|+|++++ .+.....+.+
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~  151 (163)
T 3gkn_A           80 VKSHDNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHAD  151 (163)
T ss_dssp             HHHHHHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHH
T ss_pred             HHHHHHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHH
Confidence            99999999886       8899999999999999999975321  10    168999999999999998 5566667889


Q ss_pred             HHHHHHhhccC
Q psy16151        213 ETLRLVQAFHD  223 (299)
Q Consensus       213 evl~~l~~L~~  223 (299)
                      ++++.++++..
T Consensus       152 ~il~~l~~l~~  162 (163)
T 3gkn_A          152 AVLAALKAHAK  162 (163)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.97  E-value=1.4e-30  Score=224.96  Aligned_cols=160  Identities=46%  Similarity=0.859  Sum_probs=141.9

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCC--ceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G--~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ...+.+|+++|+|++++. ..+|  ++++|+++ +||++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+
T Consensus        18 ~~~l~~G~~aP~f~l~~~-~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~   96 (213)
T 2i81_A           18 GSPTYVGKEAPFFKAEAV-FGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDS   96 (213)
T ss_dssp             --CCCBTSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CccccCCCcCCCeEeecc-ccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            446889999999999843 1278  89999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      ++.+++|.+..++..++++++||++.|+++++++.||+.. ..|...|++||||++|+|++++.+....+++.+++++.+
T Consensus        97 ~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l  175 (213)
T 2i81_A           97 KYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRII  175 (213)
T ss_dssp             HHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence            9999999998876666667899999999999999999975 345567999999999999999877777778899999999


Q ss_pred             hhccC
Q psy16151        219 QAFHD  223 (299)
Q Consensus       219 ~~L~~  223 (299)
                      ++++.
T Consensus       176 ~~l~~  180 (213)
T 2i81_A          176 DAIQH  180 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98873

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.97  E-value=5.5e-30  Score=219.08  Aligned_cols=161  Identities=54%  Similarity=0.926  Sum_probs=143.5

Q ss_pred             cccCCCCCCCCcEEeeee-CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         63 CFKLVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~-~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ..+.+|+++|+|++++.. +++|++++|++++||++||+||+++|||+|+.+++.|.+++++|+++|++||+||+|+.+.
T Consensus         4 ~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~   83 (202)
T 1uul_A            4 GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYS   83 (202)
T ss_dssp             CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            367899999999998552 3333899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+|.+.+++..++.+++||++.|.+.++++.||+.....|...|++||||++|+|++++.+....+++.+++++.++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A           84 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            99999988666666678999999999999999999865556678999999999999999887777788999999999988


Q ss_pred             cC
Q psy16151        222 HD  223 (299)
Q Consensus       222 ~~  223 (299)
                      +.
T Consensus       164 ~~  165 (202)
T 1uul_A          164 QF  165 (202)
T ss_dssp             HH
T ss_pred             hh
Confidence            74

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.97  E-value=1.6e-30  Score=219.93  Aligned_cols=153  Identities=31%  Similarity=0.571  Sum_probs=133.6

Q ss_pred             CCCCCCCCcEEeeeeCCCC--ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G--~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      .+|+++|+|+|++..  +|  ++++|++++||++||+||+++|||+|+.++|.|++++++|+++|++||+||.|+++.++
T Consensus         2 ~~G~~aP~f~l~~~~--~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~   79 (186)
T 1n8j_A            2 LINTKIKPFKNQAFK--NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK   79 (186)
T ss_dssp             CTTCBCCCCEEEEEE--TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCcCCCcEeeccc--CCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence            579999999998541  47  89999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +|.+++.   ++.+++||+++|+++++++.||+.....|...|++||||++|+|++++.+....+++.+++++.+++++.
T Consensus        80 ~~~~~~~---~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A           80 AWHSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             HHHHHCT---TGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcC---cccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            9988751   2236789999999999999999975444545799999999999999997766667789999999988864

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.97  E-value=8.9e-31  Score=220.04  Aligned_cols=151  Identities=26%  Similarity=0.286  Sum_probs=134.1

Q ss_pred             cccccCCCCC----CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         61 FICFKLVSKP----APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        61 ~~~~l~~G~~----aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      ....+++|+.    +|+|+|+   |.+|++++|++|+||++||+||+++|||+|+.+++.|++++++|+++|++|++||.
T Consensus        17 ~~~~l~~Gd~ig~~aP~f~l~---~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~   93 (179)
T 3ixr_A           17 RGSHMNIGDTLNHSLLNHPLM---LSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSR   93 (179)
T ss_dssp             -CCSSCTTCBCCHHHHHCCEE---EGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred             CCcccCcCcccCCcCCCeeEE---CCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            3557899999    9999998   55899999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--CC----ceeEEEEEeCCCcEEEEEeccCCCCCC
Q psy16151        137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--GH----TLRGLFIIDRNGVLRQITMNDLPVGRS  210 (299)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g~----~~p~~~lID~dG~I~~~~~~~~~~g~~  210 (299)
                      |+++..++|.+++       +++||++.|++++++++||+.....  |.    ..|++||||++|+|++++ .+.....+
T Consensus        94 D~~~~~~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~  165 (179)
T 3ixr_A           94 DSVKSHDSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGH  165 (179)
T ss_dssp             CCHHHHHHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTH
T ss_pred             CCHHHHHHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCC
Confidence            9999999999987       8899999999999999999975432  11    258999999999999998 55566778


Q ss_pred             HHHHHHHHhhcc
Q psy16151        211 VDETLRLVQAFH  222 (299)
Q Consensus       211 ~~evl~~l~~L~  222 (299)
                      .+++++.+++++
T Consensus       166 ~~~il~~l~~l~  177 (179)
T 3ixr_A          166 AEEVLNKLKAHA  177 (179)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            899999998875

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.97  E-value=2e-30  Score=228.73  Aligned_cols=191  Identities=29%  Similarity=0.488  Sum_probs=155.1

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEc-Ccc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKL-SDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~L-sd~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      .++.+|+++|+|++++   .+| .++| +|+  +||++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.
T Consensus         3 ~~~~iG~~aPdF~l~~---~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~   78 (249)
T 3a2v_A            3 SIPLIGERFPEMEVTT---DHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSV   78 (249)
T ss_dssp             EECCTTSBCCCEEEEE---TTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CcCCCCCCCCCeEEEc---CCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCH
Confidence            3578999999999984   467 7999 999  99999888888999999999999999999999999999999999999


Q ss_pred             HhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCC-ceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH-TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~-~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      +++.+|.+..++..+. +++||+++|+++++++.||+.....|. ..|++||||++|+|+++..+....+++.+++++.|
T Consensus        79 ~~~~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I  157 (249)
T 3a2v_A           79 FSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIV  157 (249)
T ss_dssp             HHHHHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHH
Confidence            9999999876554333 789999999999999999998655554 68999999999999999988888889999999999


Q ss_pred             hhccCCC---CCCccccc-----cceeccceechHHHHHHHhhc-CceE
Q psy16151        219 QAFHDPL---RTGAINGL-----SLLVIGLFQVTEKTCDILEDH-GVTC  258 (299)
Q Consensus       219 ~~L~~~~---~g~~vn~a-----st~~~~~i~~s~~~~~~L~~~-~~~~  258 (299)
                      ++++...   ..-++||+     +..+...-.++.+.++.+.+. +++|
T Consensus       158 ~alq~~~~~~~~~Pa~W~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  206 (249)
T 3a2v_A          158 KALKLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMESGQYRS  206 (249)
T ss_dssp             HHHHHHHHHTCBBCTTTTSBTTTBTCEEECCCCSHHHHHHHHHHTCSEE
T ss_pred             HHHHhccccCccCCCCCCCCCCCCCCeecCCCCCHHHHHHhcccCCCcc
Confidence            9998643   34555665     333332223344444444443 5555

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.97  E-value=1.3e-30  Score=226.31  Aligned_cols=185  Identities=20%  Similarity=0.314  Sum_probs=148.6

Q ss_pred             ccCCCCCCCCcEEeeeeCC--CCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDG--QLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~--~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      .+.+|+++|+|+++   +.  +| +++|+||+|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+
T Consensus         2 ~l~iG~~aP~F~l~---~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~   77 (220)
T 1xcc_A            2 GYHLGATFPNFTAK---ASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKE   77 (220)
T ss_dssp             CCCTTCBCCCCEEC---BTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHH
T ss_pred             CCCCCCCCCCcEee---cccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence            47889999999998   55  78 8999999998 899998889999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----C--CceeEEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----G--HTLRGLFIIDRNGVLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g--~~~p~~~lID~dG~I~~~~~~~~~~g~~~~ev  214 (299)
                      ++.+|.+..+++.+-.+++||++.|+++++++.||+.....    |  ...|++||||++|+|++++.++...+++.+++
T Consensus        78 ~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~el  157 (220)
T 1xcc_A           78 SHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEI  157 (220)
T ss_dssp             HHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence            99999986533200027899999999999999999974321    2  35799999999999999998877788899999


Q ss_pred             HHHHhhccCCCCCCcc----ccccceeccceechHHHHHHHh
Q psy16151        215 LRLVQAFHDPLRTGAI----NGLSLLVIGLFQVTEKTCDILE  252 (299)
Q Consensus       215 l~~l~~L~~~~~g~~v----n~ast~~~~~i~~s~~~~~~L~  252 (299)
                      ++.|++|+.....+.+    |.+...+.-...++++.++...
T Consensus       158 l~~i~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~  199 (220)
T 1xcc_A          158 LRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHF  199 (220)
T ss_dssp             HHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHC
T ss_pred             HHHHHHHHhhhcCCcccCCCcCcCCceEeCCCCCHHHHHHHh
Confidence            9999999865543322    2234444433334555555554

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.97  E-value=5.9e-30  Score=212.04  Aligned_cols=148  Identities=22%  Similarity=0.238  Sum_probs=131.3

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+++|+++|+|+|+   |.+|++++|++++||++||+||+++|||+|+.+++.|++++++   +|++|++||.|+++
T Consensus        16 ~~~~l~~G~~aP~f~l~---~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~   89 (166)
T 3p7x_A           16 KGQQINEGDFAPDFTVL---DNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPF   89 (166)
T ss_dssp             ESCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHH
T ss_pred             ecccCCCCCCCCCeEEE---cCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHH
Confidence            35578999999999998   6799999999999999999999999999999999999999887   68999999999999


Q ss_pred             hHHHHhhcccccCCCCcc-ceeeeecC-chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETLRL  217 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~~  217 (299)
                      .+++|.+++       ++ +||+++|+ ++++++.||+.....|...|++||||++|+|++++... .....+.+++++.
T Consensus        90 ~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~  162 (166)
T 3p7x_A           90 AQKRWCASA-------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAA  162 (166)
T ss_dssp             HHHHHHHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHH
T ss_pred             HHHHHHHHc-------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHH
Confidence            999999887       78 89999999 89999999998655555679999999999999997644 3455678899988


Q ss_pred             Hhhc
Q psy16151        218 VQAF  221 (299)
Q Consensus       218 l~~L  221 (299)
                      ++++
T Consensus       163 l~~l  166 (166)
T 3p7x_A          163 YKNI  166 (166)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            8753

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.97  E-value=9.2e-30  Score=210.26  Aligned_cols=148  Identities=24%  Similarity=0.350  Sum_probs=130.5

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+|+   +.+|++++|++++||++||+||+++|||+|+.++|.|++++++|  ++++|++||.|+++.
T Consensus        13 ~~~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~   87 (163)
T 1psq_A           13 GKQLQVGDKALDFSLT---TTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFA   87 (163)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHH
T ss_pred             cCCCCCCCCCCCEEEE---cCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHH
Confidence            3468899999999998   67999999999999999999998899999999999999999999  699999999999999


Q ss_pred             HHHHhhcccccCCCCcc-ceeeeec-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETLRLV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~~l  218 (299)
                      +++|.+++       ++ +||++.| +++++++.||+.....|...|++||||++|+|++.+.+. .....+.+++++.+
T Consensus        88 ~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l  160 (163)
T 1psq_A           88 QKRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAA  160 (163)
T ss_dssp             HHHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             HHHHHHhc-------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHH
Confidence            99999886       78 8999999 889999999997544455569999999999999998754 33455778999988


Q ss_pred             hhc
Q psy16151        219 QAF  221 (299)
Q Consensus       219 ~~L  221 (299)
                      ++|
T Consensus       161 ~~l  163 (163)
T 1psq_A          161 KAL  163 (163)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.97  E-value=8.6e-30  Score=210.55  Aligned_cols=144  Identities=19%  Similarity=0.280  Sum_probs=124.8

Q ss_pred             cccCCCCCCCCcEEeeeeCCCC--ceEEcCc-cCCCeEEEEEEeCCCCCCch-hhHHHHHHHHHHHhhcCcE-EEEEeCC
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQL--KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTE-VVAASVD  137 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G--~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~~~~~~~gv~-vi~Vs~d  137 (299)
                      +++++|+++|+|+++.. +.+|  ++++|++ ++||++||+||+++|||+|+ .++|.|++++++|+++|++ |++||.|
T Consensus         2 m~~~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d   80 (162)
T 1tp9_A            2 APIAVGDVLPDGKLAYF-DEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             CCCCTTCBCCCCEEEEE-CTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CcCCCCCCCCCeEEEee-cCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            46889999999998633 6789  9999999 89999999999999999999 9999999999999999999 9999999


Q ss_pred             CHHhHHHHhhcccccCCCCcc--ceeeeecCchHHHHHhCCcccC--CC---CceeEEEEEeCCCcEEEEEeccCCCCC-
Q psy16151        138 SHFTHLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSD--QG---HTLRGLFIIDRNGVLRQITMNDLPVGR-  209 (299)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~~gv~~~~--~g---~~~p~~~lID~dG~I~~~~~~~~~~g~-  209 (299)
                      +++.+++|.+++       ++  +||+++|++++++++||+....  .|   ...|++|||| +|+|++++.+. +.++ 
T Consensus        81 ~~~~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~  151 (162)
T 1tp9_A           81 DPFVMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFT  151 (162)
T ss_dssp             CHHHHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCS
T ss_pred             CHHHHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCc
Confidence            999999999986       66  8999999999999999997432  13   1469999999 99999999766 4333 


Q ss_pred             --CHHHHHH
Q psy16151        210 --SVDETLR  216 (299)
Q Consensus       210 --~~~evl~  216 (299)
                        +.+++++
T Consensus       152 ~~~~~~vl~  160 (162)
T 1tp9_A          152 VSSAEDILK  160 (162)
T ss_dssp             SCSHHHHHT
T ss_pred             cCCHHHHHh
Confidence              4666654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.97  E-value=7e-30  Score=210.44  Aligned_cols=146  Identities=30%  Similarity=0.428  Sum_probs=132.2

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCe-EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~-vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      +++|+++|+|+++   +.+|++++|++++||+ +||+||+++|||+|+.++|.|.+++++|+++|++||+|++|+++..+
T Consensus         2 l~~G~~~P~f~l~---~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~   78 (161)
T 3drn_A            2 VKVGDKAPLFEGI---ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK   78 (161)
T ss_dssp             CCTTSBCCCCEEE---ETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHH
T ss_pred             CCCCCcCCCeEee---cCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            6899999999998   5699999999999997 99999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +|.+.+       +++||++.|.+.++++.||+...  ....|++||||++|+|++++.+........+++++.+++++
T Consensus        79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~  148 (161)
T 3drn_A           79 RFKEKY-------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIK  148 (161)
T ss_dssp             HHHHHT-------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHh-------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhh
Confidence            999886       88999999999999999999731  23479999999999999998765666677889999988875

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.96  E-value=1.8e-29  Score=209.10  Aligned_cols=146  Identities=20%  Similarity=0.294  Sum_probs=126.8

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+++|+++|+|+++   +.+|++++|++++||++||+||+++|||+|+.++|.|++++++|  +|++||+||.|+++
T Consensus        13 ~~~~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~   87 (165)
T 1q98_A           13 GGHFPQVGEIVENFILV---GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPF   87 (165)
T ss_dssp             ESCCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHH
T ss_pred             ccccCCCCCCCCCeEEE---CCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHH
Confidence            34568899999999998   67999999999999999999999999999999999999999999  69999999999998


Q ss_pred             hHHHHhhcccccCCCCcc-ceeeeecC-chHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEec-cCCCCCCHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMN-DLPVGRSVDET  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~-~~~~g~~~~ev  214 (299)
                      .+++|.+++       ++ +||+++|+ ++++++.||+....   .|...|++||||++|+|++.+.+ ......+.+++
T Consensus        88 ~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~  160 (165)
T 1q98_A           88 AQARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAA  160 (165)
T ss_dssp             HHTTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHH
T ss_pred             HHHHHHHHc-------CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHH
Confidence            888888775       78 79999998 79999999997532   24456999999999999999974 44556678888


Q ss_pred             HHHH
Q psy16151        215 LRLV  218 (299)
Q Consensus       215 l~~l  218 (299)
                      ++.+
T Consensus       161 l~~l  164 (165)
T 1q98_A          161 LAVL  164 (165)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            7765

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.96  E-value=1.2e-29  Score=214.98  Aligned_cols=156  Identities=44%  Similarity=0.845  Sum_probs=138.4

Q ss_pred             CCCCCCCCcEEeeeeCCCC--ceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         66 LVSKPAPFWQGTAVVDGQL--KEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G--~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      ++|+++|+|++++. ..+|  ++++|+++ +||++||+||+++|||+|+.+++.|.+++++|+++|++||+||+|+++.+
T Consensus         1 ~~G~~aP~f~l~~~-~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~   79 (192)
T 2h01_A            1 AFQGQAPSFKAEAV-FGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTH   79 (192)
T ss_dssp             CCSSBCCCCEEEEE-CTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCcEeEee-ecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHH
Confidence            47999999999843 1278  89999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+|.+.+.++.++.+++||++.|++.++++.||+.. ..|...|++||||++|+|++++.+....+.+.+++++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A           80 LAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            999998866666667899999999999999999975 3455679999999999999998776666778899999999886


Q ss_pred             C
Q psy16151        223 D  223 (299)
Q Consensus       223 ~  223 (299)
                      .
T Consensus       159 ~  159 (192)
T 2h01_A          159 H  159 (192)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.96  E-value=3.2e-29  Score=214.49  Aligned_cols=147  Identities=22%  Similarity=0.294  Sum_probs=129.4

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      .....+++|+++|+|+|+   |.+|++++|++++||++||+||+++|||+|+.+++.|++++++|  +|++|++||.|++
T Consensus        47 ~~~~~l~~G~~aPdf~l~---d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~  121 (200)
T 3zrd_A           47 VAGKLPQIGDKAKDFTLV---AKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLP  121 (200)
T ss_dssp             EESCCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCH
T ss_pred             eecccCCCCCCCCCeEEE---CCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCH
Confidence            345578999999999998   67999999999999999999999999999999999999999999  6899999999999


Q ss_pred             HhHHHHhhcccccCCCCcc-ceeeeecC-chHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDE  213 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~e  213 (299)
                      +..++|.+++       ++ +||+++|+ +++++++||+....   .|...|++||||++|+|++++... .....+.++
T Consensus       122 ~~~~~~~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~  194 (200)
T 3zrd_A          122 FAQSRFCGAE-------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDA  194 (200)
T ss_dssp             HHHTTCTTTT-------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHH
T ss_pred             HHHHHHHHHc-------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHH
Confidence            9888888776       88 99999999 89999999997543   344579999999999999998744 455667888


Q ss_pred             HHHHH
Q psy16151        214 TLRLV  218 (299)
Q Consensus       214 vl~~l  218 (299)
                      +++.+
T Consensus       195 ~l~~L  199 (200)
T 3zrd_A          195 ALAAL  199 (200)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87765

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.1e-29  Score=214.73  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=126.8

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCC-ceEEcCc-cCCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCcE-EEEEe
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQL-KEIKLSD-YYGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAAS  135 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G-~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv~-vi~Vs  135 (299)
                      .+++.+++|+++|+|+|+++ ..+| ++++|+| ++||++||+||+++|||+|+. |+|.|++++++|+++|++ |++||
T Consensus        21 ~~~~~l~vG~~aPdf~l~~~-~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is   99 (184)
T 3uma_A           21 QSMMTIAVGDKLPNATFKEK-TADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVA   99 (184)
T ss_dssp             CCSSCCCTTCBCCCCEEEEE-ETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEE
T ss_pred             cccCcCCCCCCCCCcEeecc-cCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence            44567999999999999954 2378 9999999 899999999999999999999 899999999999999999 99999


Q ss_pred             CCCHHhHHHHhhcccccCCCCccc--eeeeecCchHHHHHhCCcccC--CCC---ceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151        136 VDSHFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSD--QGH---TLRGLFIIDRNGVLRQITMNDLPVG  208 (299)
Q Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~~gv~~~~--~g~---~~p~~~lID~dG~I~~~~~~~~~~g  208 (299)
                      .|+++.+++|.++.       +++  ||+++|++++++++||+....  .|.   ..|++|||| ||+|++++.+..+..
T Consensus       100 ~d~~~~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~  171 (184)
T 3uma_A          100 VNDLHVMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQ  171 (184)
T ss_dssp             SSCHHHHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred             CCCHHHHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCC
Confidence            99999999999987       777  999999999999999997543  122   458899997 999999998764433


Q ss_pred             ---CCHHHHHHH
Q psy16151        209 ---RSVDETLRL  217 (299)
Q Consensus       209 ---~~~~evl~~  217 (299)
                         ...+++++.
T Consensus       172 ~~~~~~~~vL~~  183 (184)
T 3uma_A          172 ATASGAAAMLEL  183 (184)
T ss_dssp             CSTTSHHHHHHH
T ss_pred             CcCCCHHHHHhh
Confidence               345555543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.96  E-value=1.1e-28  Score=208.20  Aligned_cols=172  Identities=28%  Similarity=0.501  Sum_probs=137.4

Q ss_pred             cCCCCCCCCcEEeeeeCCCCc----eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLK----EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~----~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      +.+|+++|+|+|.+.   +|+    +++|++++||++||+||+++|||+|+.++|.|.+++++|++++++|++||.|+++
T Consensus         1 ~~~G~~~P~f~l~~~---~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~   77 (187)
T 1we0_A            1 SLIGTEVQPFRAQAF---QSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHF   77 (187)
T ss_dssp             CCTTCBCCCCEEEEE---CSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCCCcCCCeEEecc---CCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            468999999999854   677    9999999999999999999999999999999999999999989999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ..++|.+.+...   .+++||++.|.+.++++.||+.....|...|++||||++|+|++++.+......+.+++++.+++
T Consensus        78 ~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  154 (187)
T 1we0_A           78 VHKAWHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (187)
T ss_dssp             HHHHHHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             HHHHHHHHhccc---cCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            999999875211   15789999999999999999975544556799999999999999987766666678899999888


Q ss_pred             ccCCCCCCccccccceeccceechHHH
Q psy16151        221 FHDPLRTGAINGLSLLVIGLFQVTEKT  247 (299)
Q Consensus       221 L~~~~~g~~vn~ast~~~~~i~~s~~~  247 (299)
                      +....     ..|+.+++.+|+..+++
T Consensus       155 l~~~~-----~~~~~~~p~~w~~~~~~  176 (187)
T 1we0_A          155 AQYVR-----ENPGEVCPAKWEEGGET  176 (187)
T ss_dssp             HHHHH-----TSTTCCC----------
T ss_pred             Hhhhh-----hCCCcccccccccCCce
Confidence            86422     22244666666655443

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.96  E-value=1.2e-28  Score=213.49  Aligned_cols=148  Identities=18%  Similarity=0.119  Sum_probs=130.2

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCch-----hhHHHHHHHHHHHhhcCcEEEEEe
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP-----TEILAFNDRLEEFHQINTEVVAAS  135 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~-----~~~~~l~~l~~~~~~~gv~vi~Vs  135 (299)
                      ....+++|+++|+|+|+   +.+|+.++|+||+||++||+||++.|||+|.     .+++.|.++   |  +|++||+||
T Consensus        18 ~g~~l~vG~~APdFtL~---d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS   89 (224)
T 3keb_A           18 IGDFPRKGDYLPSFMLV---DDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVIT   89 (224)
T ss_dssp             BSCCCCTTCBCCCCEEE---ETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEE
T ss_pred             ecCcCCCCCCCCCeEEE---CCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEE
Confidence            34578999999999998   6689999999999999999999888899999     999999887   5  689999999


Q ss_pred             CCCHHhHHHHhhcccccCCCCcc-ceeeeecC-chHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccC-CCCC
Q psy16151        136 VDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDL-PVGR  209 (299)
Q Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~-~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~-~~g~  209 (299)
                      .|+++.+++|.+++       ++ +||+++|+ +++++++||+....   .|...|++||||++|+|++++.... ....
T Consensus        90 ~Ds~~~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~p  162 (224)
T 3keb_A           90 VDSPSSLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFF  162 (224)
T ss_dssp             SSCHHHHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCC
T ss_pred             CCCHHHHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCC
Confidence            99999999999987       77 69999998 69999999998653   3566899999999999999987554 3456


Q ss_pred             CHHHHHHHHhhccC
Q psy16151        210 SVDETLRLVQAFHD  223 (299)
Q Consensus       210 ~~~evl~~l~~L~~  223 (299)
                      +.+++++.++.+..
T Consensus       163 d~~evl~~L~~l~~  176 (224)
T 3keb_A          163 DFDAIEKLLQEGEQ  176 (224)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhh
Confidence            89999999988864

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.96  E-value=8.4e-29  Score=205.95  Aligned_cols=147  Identities=22%  Similarity=0.280  Sum_probs=129.2

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+++   |.+|++++|++++||++||+||+++|||+|+.+++.|++++++|  ++++||+||.|+++.
T Consensus        18 ~~~l~~g~~~P~f~l~---~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~   92 (171)
T 2yzh_A           18 GPELKVGDRAPEAVVV---TKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFA   92 (171)
T ss_dssp             SCCCCTTSBCCCEEEE---ETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHH
T ss_pred             CCcCCCCCcCCceEEE---CCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHH
Confidence            3468899999999998   66999999999999999999999999999999999999999999  699999999999999


Q ss_pred             HHHHhhcccccCCCCcc-ceeeeec-CchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETL  215 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl  215 (299)
                      .++|.+++       ++ +||++.| +++++ ++||+....   .|...|++||||++|+|++++.+. .....+.++++
T Consensus        93 ~~~~~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll  164 (171)
T 2yzh_A           93 QKRFCESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVV  164 (171)
T ss_dssp             HHHHHHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHH
T ss_pred             HHHHHHHc-------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHH
Confidence            99999876       77 8999999 78889 999997543   244579999999999999998653 33456788999


Q ss_pred             HHHhhc
Q psy16151        216 RLVQAF  221 (299)
Q Consensus       216 ~~l~~L  221 (299)
                      +.+++|
T Consensus       165 ~~l~~l  170 (171)
T 2yzh_A          165 NKVKEL  170 (171)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988865

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.96  E-value=7.6e-29  Score=206.26  Aligned_cols=145  Identities=16%  Similarity=0.199  Sum_probs=123.0

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCc-EEEEEeCCCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVDSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv-~vi~Vs~d~~~  140 (299)
                      .+++|+++|+|+|+  .+.+|++++|+++ +||++||+||+++|||+|+. ++|.|++++++|+++|+ +||+||.|+++
T Consensus         2 ~l~~G~~aP~f~l~--~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~   79 (167)
T 2wfc_A            2 PIKEGDKLPAVTVF--GATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSF   79 (167)
T ss_dssp             CCCTTCBCCCCEEE--SSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHH
T ss_pred             CCCCCCcCCCcEee--cCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHH
Confidence            47899999999987  1458999999999 99999999999999999999 99999999999999999 99999999999


Q ss_pred             hHHHHhhcccccCCCCccc--eeeeecCchHHHHHhCCcccCC---C--CceeEEEEEeCCCcEEEEEeccCCCCCC---
Q psy16151        141 THLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSDQ---G--HTLRGLFIIDRNGVLRQITMNDLPVGRS---  210 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~~gv~~~~~---g--~~~p~~~lID~dG~I~~~~~~~~~~g~~---  210 (299)
                      .+++|.++.       +++  ||+++|++++++++||+.....   |  ...|++||| ++|+|++++.+....+..   
T Consensus        80 ~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~~  151 (167)
T 2wfc_A           80 VMDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCSL  151 (167)
T ss_dssp             HHHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTTS
T ss_pred             HHHHHHHhc-------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcceecc
Confidence            999999886       677  9999999999999999974310   1  135899999 999999998766554443   


Q ss_pred             HHHHHHHH
Q psy16151        211 VDETLRLV  218 (299)
Q Consensus       211 ~~evl~~l  218 (299)
                      .+.+++.+
T Consensus       152 ~~~~~~~~  159 (167)
T 2wfc_A          152 APNILSQL  159 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            34444443

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.96  E-value=1.9e-28  Score=200.98  Aligned_cols=148  Identities=30%  Similarity=0.483  Sum_probs=132.3

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      +.+|+++|+|++.   +.+|+.++|++++|| ++||+||+++||++|+.+++.|.+++++|++++++|++|++|+++..+
T Consensus         9 ~~~G~~~p~f~l~---~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~   85 (160)
T 1xvw_A            9 LNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK   85 (160)
T ss_dssp             CCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCeEeE---cCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHH
Confidence            8899999999998   669999999999998 999999989999999999999999999999889999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +|.+.+       +++||++.|.  ++.+++.||+.....+.+.|++||||++|+|++++.+........+++++.++.+
T Consensus        86 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A           86 IWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             HHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             HHHHhc-------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            999886       7899999995  8999999999744334344499999999999999977665666889999999887


Q ss_pred             c
Q psy16151        222 H  222 (299)
Q Consensus       222 ~  222 (299)
                      +
T Consensus       159 ~  159 (160)
T 1xvw_A          159 T  159 (160)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.96  E-value=2.7e-28  Score=207.69  Aligned_cols=157  Identities=43%  Similarity=0.801  Sum_probs=136.9

Q ss_pred             cCCCCCCCCcEEeeeeCCCCc---eEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLK---EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~---~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      +.+|+++|+|++++. ..+|+   +++|+++ +||++||+||+++|||+|+.++|.|.+++++|+++|++|++||.|+++
T Consensus         1 ~~~G~~~P~f~l~~~-~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~   79 (198)
T 1zof_A            1 MVVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ   79 (198)
T ss_dssp             CCTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCCCcCCceEeecc-cCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            467999999999843 12788   9999999 999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ..++|.+.+.++.+..+++||++.|++.++++.||+... .|...|++||||++|+|++++.+....+.+.+++++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  158 (198)
T 1zof_A           80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (198)
T ss_dssp             HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCccc-CCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            999999986555444488999999999999999999753 2446799999999999999987766666778899999988


Q ss_pred             ccC
Q psy16151        221 FHD  223 (299)
Q Consensus       221 L~~  223 (299)
                      ++.
T Consensus       159 l~~  161 (198)
T 1zof_A          159 LLH  161 (198)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.96  E-value=5.4e-28  Score=205.47  Aligned_cols=156  Identities=36%  Similarity=0.601  Sum_probs=136.1

Q ss_pred             cccCCCCCCCCcEEeeeeCC-----------CC--ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCc
Q psy16151         63 CFKLVSKPAPFWQGTAVVDG-----------QL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT  129 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~-----------~G--~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv  129 (299)
                      +.+.+|+++|+|++++. +.           +|  ++++|++++||++||+||+++|||+|+.++|.|.+++++|+++++
T Consensus         2 ~~l~~G~~~P~f~l~~~-~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v   80 (195)
T 2bmx_A            2 PLLTIGDQFPAYQLTAL-IGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDA   80 (195)
T ss_dssp             CBCCTTCBCCCCEEEEE-CSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTE
T ss_pred             CcCCCCCcCCCcCcccc-cccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            35889999999999965 21           26  899999999999999999999999999999999999999998899


Q ss_pred             EEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCC
Q psy16151        130 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGR  209 (299)
Q Consensus       130 ~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~  209 (299)
                      +|++|++|+++..++|.+.+..   ..+++||++.|++..+++.||+... .|...|++||||++|+|++++.+......
T Consensus        81 ~vv~Vs~d~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~  156 (195)
T 2bmx_A           81 QILGVSIDSEFAHFQWRAQHND---LKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGR  156 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHCTT---GGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCC
T ss_pred             EEEEEECCCHHHHHHHHHHhcc---ccCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCC
Confidence            9999999999999999987522   1267899999999999999999754 45567999999999999999877666667


Q ss_pred             CHHHHHHHHhhccC
Q psy16151        210 SVDETLRLVQAFHD  223 (299)
Q Consensus       210 ~~~evl~~l~~L~~  223 (299)
                      +.+++++.++.+..
T Consensus       157 ~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          157 NVDEVLRVLDALQS  170 (195)
T ss_dssp             CHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhh
Confidence            89999999998865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.96  E-value=2.6e-28  Score=214.17  Aligned_cols=200  Identities=20%  Similarity=0.316  Sum_probs=152.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCc--eEEcCc-cCCCeEEEEEEeCCCCCCch-hhHHHHHHHHHHHhhcCc-EEEEEeCCC
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLK--EIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINT-EVVAASVDS  138 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~--~v~Lsd-~~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~~~~~~~gv-~vi~Vs~d~  138 (299)
                      .+.+|+++|+|+|+++.  +|+  +++|++ ++||++||+||+++|||+|+ .++|.|++++++|+++|+ +|++||.|+
T Consensus         2 ~~~~G~~aP~f~l~~~~--~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~   79 (241)
T 1nm3_A            2 SSMEGKKVPQVTFRTRQ--GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVND   79 (241)
T ss_dssp             -CCTTSBCCCCEEEEEE--TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred             CccCCCCCCCeEEEccc--CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCC
Confidence            47889999999998542  566  999999 89999999999999999999 999999999999999999 999999999


Q ss_pred             HHhHHHHhhcccccCCCCccc-eeeeecCchHHHHHhCCcccCC--CC---ceeEEEEEeCCCcEEEEEeccCCCC----
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQ--GH---TLRGLFIIDRNGVLRQITMNDLPVG----  208 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~~gv~~~~~--g~---~~p~~~lID~dG~I~~~~~~~~~~g----  208 (299)
                      ++.+++|.+++       ++. ||+++|++++++++||+.....  |.   ..|++||| ++|+|++++.+....+    
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~  151 (241)
T 1nm3_A           80 TFVMNAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFK  151 (241)
T ss_dssp             HHHHHHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCS
T ss_pred             HHHHHHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccce
Confidence            99999999886       665 9999999999999999975432  33   45899999 9999999998765554    


Q ss_pred             -CCHHHHHHHHhhccCCCCCCccccc-cceeccceechHHHHHHHhhcCceEEecc---e------eeecccceeEEEEE
Q psy16151        209 -RSVDETLRLVQAFHDPLRTGAINGL-SLLVIGLFQVTEKTCDILEDHGVTCELRG---R------TFIKGKGLITTYFI  277 (299)
Q Consensus       209 -~~~~evl~~l~~L~~~~~g~~vn~a-st~~~~~i~~s~~~~~~L~~~~~~~~~rg---~------~~~k~~~~~~t~~~  277 (299)
                       .+.+++++.++....  ....+..= ..+|+-    ...+.+.|+.+++.++.+-   .      ...-|...+++-++
T Consensus       152 ~~~~~~il~~l~~~~i--~~~~i~ly~~~~Cp~----C~~a~~~L~~~~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          152 VSDADTMLKYLAPQHQ--VQESISIFTKPGCPF----CAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             SSSHHHHHHHHCTTSC--CCCCEEEEECSSCHH----HHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             ecCHHHHHHHhhhhcc--ccceEEEEECCCChH----HHHHHHHHHHcCCceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence             588999998876431  11111111 334443    3456777887776554321   0      01125566677666


Q ss_pred             Ec
Q psy16151        278 RQ  279 (299)
Q Consensus       278 ~~  279 (299)
                      .+
T Consensus       226 ~g  227 (241)
T 1nm3_A          226 GG  227 (241)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.95  E-value=8.3e-28  Score=200.69  Aligned_cols=148  Identities=20%  Similarity=0.270  Sum_probs=125.2

Q ss_pred             cccCCCCCCCCcEEeeeeC-------CCCceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCc-EEE
Q psy16151         63 CFKLVSKPAPFWQGTAVVD-------GQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVV  132 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~-------~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv-~vi  132 (299)
                      .++++|+++|++++....+       ...++++|+|+ +||++||+|||++|||+|.. |++.|++.+++|+++|+ +|+
T Consensus         8 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vi   87 (176)
T 4f82_A            8 HMIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIW   87 (176)
T ss_dssp             CCCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence            4688999999999987755       33478999997 99999999999999999999 99999999999999999 999


Q ss_pred             EEeCCCHHhHHHHhhcccccCCCCccc--eeeeecCchHHHHHhCCcccC--CCC---ceeEEEEEeCCCcEEEEEeccC
Q psy16151        133 AASVDSHFTHLAWVNTPRKEGGLGKLK--IPLLSDLTHKISLDYGVYLSD--QGH---TLRGLFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       133 ~Vs~d~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~~gv~~~~--~g~---~~p~~~lID~dG~I~~~~~~~~  205 (299)
                      +||+|+++.+++|.++.       +++  ||+++|++++++++||+..+.  .|.   ..|++||| +||+|++++.++.
T Consensus        88 gIS~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~  159 (176)
T 4f82_A           88 CVSVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAP  159 (176)
T ss_dssp             EEESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCC
Confidence            99999999999999886       666  999999999999999997653  232   45899999 9999999998653


Q ss_pred             C--CCCCHHHHHHHH
Q psy16151        206 P--VGRSVDETLRLV  218 (299)
Q Consensus       206 ~--~g~~~~evl~~l  218 (299)
                      .  ...+.+++++.|
T Consensus       160 ~~~~~~~a~~vL~~L  174 (176)
T 4f82_A          160 GKFEVSDAASVLATL  174 (176)
T ss_dssp             TCCSSSSHHHHHHTC
T ss_pred             CCcchhhHHHHHHHh
Confidence            2  123455555443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.95  E-value=4.1e-28  Score=199.31  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=115.9

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCC--eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK--YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk--~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      ...+++|+++|+|+++   |.+|++++|++++||  ++||+||+++|||+|+.++|.|++++++|+++| +||+||.|++
T Consensus         4 ~~~~~~G~~~P~f~l~---~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~   79 (159)
T 2a4v_A            4 VNELEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSV   79 (159)
T ss_dssp             TTCCCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCH
T ss_pred             CCcCCCCCCCCCeEEE---CCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCH
Confidence            3468899999999998   679999999999987  899999999999999999999999999999989 9999999999


Q ss_pred             HhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccC-CCCceeEEEEEeCCCcEEEEEec
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD-QGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~-~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +.+++|.+.+       +++||++.|+++++++.||+.... .| ..|++||| ++|+|++++.+
T Consensus        80 ~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g  135 (159)
T 2a4v_A           80 TSQKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVK  135 (159)
T ss_dssp             HHHHHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEES
T ss_pred             HHHHHHHHHh-------CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEcc
Confidence            9999999876       789999999999999999997543 23 35699999 99999999854

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.95  E-value=2.6e-27  Score=195.74  Aligned_cols=149  Identities=22%  Similarity=0.295  Sum_probs=127.7

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|++.   +.+|++++|++++||++||+||++.|||+|+.++|.|++++++|  .+++|++|+.|+++.
T Consensus        15 ~~~~~~G~~~p~f~l~---~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~   89 (167)
T 2jsy_A           15 GQEVKVGDQAPDFTVL---TNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFA   89 (167)
T ss_dssp             SCCCCTTSCCCCCEEE---BTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGG
T ss_pred             cCccCCCCcCCceEEE---CCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHH
Confidence            4468899999999998   67999999999999999999995445999999999999999999  699999999999887


Q ss_pred             HHHHhhcccccCCCCcc-ceeeeec-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC-CCCCCHHHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKL-KIPLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL-PVGRSVDETLRLV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~p~l~D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~-~~g~~~~evl~~l  218 (299)
                      .++|.+++       ++ +||++.| .++++++.||+.....|...|++||||++|+|++++.+.. ....+.+++++.+
T Consensus        90 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l  162 (167)
T 2jsy_A           90 QARWCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAA  162 (167)
T ss_dssp             TSCCGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHH
T ss_pred             HHHHHHhc-------CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHH
Confidence            77888765       77 8999999 8899999999976544555699999999999999986542 3344678899888


Q ss_pred             hhcc
Q psy16151        219 QAFH  222 (299)
Q Consensus       219 ~~L~  222 (299)
                      +.|.
T Consensus       163 ~~ll  166 (167)
T 2jsy_A          163 KALV  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8763

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.95  E-value=1.4e-27  Score=218.34  Aligned_cols=138  Identities=26%  Similarity=0.331  Sum_probs=123.4

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      .++|+|+|+   |.+|++++|+||+||+|||+|||+.|||+|+.|++.|++    ...++++|+|||.|+++.+++|.++
T Consensus         2 ak~p~F~l~---~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D~~~~~~~f~~~   74 (322)
T 4eo3_A            2 ARVKHFELL---TDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRDSVEALKRFKEK   74 (322)
T ss_dssp             CBCCCCEEE---ETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESCCHHHHHHHHHH
T ss_pred             CCCCCcEEE---CCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCCCHHHHHHHHHh
Confidence            368999998   669999999999999999999999999999999998865    2345899999999999999999988


Q ss_pred             ccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +       +++||+++|++++++++||+...  |...|++||||++|+|++++ .......|.+++++.+++++.
T Consensus        75 ~-------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~-~~v~~~~h~~~~l~~~~~~~~  139 (322)
T 4eo3_A           75 N-------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEW-RRVKVEGHVQEVKEALDRLIE  139 (322)
T ss_dssp             H-------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEE-ESCCSTTHHHHHHHHHHHHHH
T ss_pred             h-------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEE-eCCCccccHHHHHHHHhhhch
Confidence            7       89999999999999999999743  45679999999999999998 456788899999999998863

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.95  E-value=9.8e-27  Score=194.45  Aligned_cols=146  Identities=23%  Similarity=0.356  Sum_probs=122.0

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|+|+   +.+|+.+++++++||++||+||++.||++|+.++|.|.+++++   .+++||+|+.|+++.
T Consensus        15 ~~~l~~G~~~P~f~l~---~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~   88 (175)
T 1xvq_A           15 GELPAVGSPAPAFTLT---GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFA   88 (175)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHH
T ss_pred             CCCCCcCCcCCCeEEE---CCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHH
Confidence            4468899999999998   6799999999999999999999665699999999999999988   689999999999988


Q ss_pred             HHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEec-cCCCCCCHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMN-DLPVGRSVDETLR  216 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~-~~~~g~~~~evl~  216 (299)
                      .++|.+++       ++ +||++.|++..+++.||+....   .|...|++||||++|+|++++.+ +.....+++++++
T Consensus        89 ~~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~  161 (175)
T 1xvq_A           89 QKRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALA  161 (175)
T ss_dssp             HTTCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHH
T ss_pred             HHHHHHHc-------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHH
Confidence            88888765       77 8999999999999999997542   24456999999999999999873 4445557888888


Q ss_pred             HHhh
Q psy16151        217 LVQA  220 (299)
Q Consensus       217 ~l~~  220 (299)
                      .+.+
T Consensus       162 ~l~~  165 (175)
T 1xvq_A          162 ALGA  165 (175)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.95  E-value=5.8e-27  Score=202.83  Aligned_cols=165  Identities=15%  Similarity=0.040  Sum_probs=136.6

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCe-EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC----
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV----  136 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~-vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~----  136 (299)
                      ...+++|+++|+|+|+   +.+|++++|++++||+ +||+|| ++|||+|+.++|.|.+++++|+++|++||+|++    
T Consensus        29 ~~~l~~G~~aP~f~l~---~~~G~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~  104 (218)
T 3u5r_E           29 SNSITLGTRAADFVLP---DAGGNLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQ  104 (218)
T ss_dssp             CCCCCTTCBCCCCCEE---CTTCCEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTT
T ss_pred             CCcCCCCCcCCCcEeE---CCCCCEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccc
Confidence            3468999999999998   6799999999999996 888888 899999999999999999999999999999999    


Q ss_pred             ----CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC-----C
Q psy16151        137 ----DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP-----V  207 (299)
Q Consensus       137 ----d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~-----~  207 (299)
                          |+++..++|.+.+       +++||++.|.+..+++.|++.      ..|++||||++|+|+++......     .
T Consensus       105 ~~~~d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~  171 (218)
T 3u5r_E          105 AFPEETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGK  171 (218)
T ss_dssp             TCGGGSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCC
T ss_pred             ccccCCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEecccccccccccc
Confidence                6678888888876       889999999999999999996      56999999999999988643221     2


Q ss_pred             CCCHHHHHHHHhhccCCCCCCccccccceeccceec
Q psy16151        208 GRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQV  243 (299)
Q Consensus       208 g~~~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~~  243 (299)
                      ....+++.+.|+.+..........+++-||+.++..
T Consensus       172 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~  207 (218)
T 3u5r_E          172 DVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTA  207 (218)
T ss_dssp             CCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCC
T ss_pred             ccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCC
Confidence            234678888888876544444444556677766654

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.95  E-value=4.4e-27  Score=195.86  Aligned_cols=136  Identities=18%  Similarity=0.200  Sum_probs=118.5

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcE-EEEEeCCC
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE-VVAASVDS  138 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~-vi~Vs~d~  138 (299)
                      -..++++|+++|+|+|+  .+..++.++|+| ++||++||+|||+.|||+|..|++.|++.+++|+++|++ |++||+|+
T Consensus        10 ~~~~~~vGd~aPdf~l~--~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~   87 (171)
T 2xhf_A           10 HGSPIKVGDIIPDVLVY--EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVND   87 (171)
T ss_dssp             -CCCCCTTCBCCCCEEE--CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSC
T ss_pred             CCCcccCcCCCCCeEEe--cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            34579999999999998  122238999999 599999999999999999999999999999999999996 99999999


Q ss_pred             HHhHHHHhhcccccCCCCcc--ceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEeccCC
Q psy16151        139 HFTHLAWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITMNDLP  206 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~~~~~  206 (299)
                      ++.+++|.+..       ++  +||+++|++++++++||+..+..  |   ...|.+|||| ||+|++++.....
T Consensus        88 ~~~~~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~  154 (171)
T 2xhf_A           88 PFVMAAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDI  154 (171)
T ss_dssp             HHHHHHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSC
T ss_pred             HHHHHHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCC
Confidence            99999999886       55  89999999999999999986531  1   3678999999 9999999975543

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.94  E-value=4.5e-27  Score=197.98  Aligned_cols=149  Identities=14%  Similarity=0.215  Sum_probs=125.8

Q ss_pred             cCCCCCCCCcEEeeeeC--------CCC----ceEEcCc-cCCCeEEEEEEeCCCCCCch-hhHHHHHHHHHHH-hhcCc
Q psy16151         65 KLVSKPAPFWQGTAVVD--------GQL----KEIKLSD-YYGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEF-HQINT  129 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~--------~~G----~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~~~~-~~~gv  129 (299)
                      +++|+.+|+|+|++...        .+|    +.++|++ ++||++||+|||+.|||+|. .|++.|++.+++| +++|+
T Consensus         1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~   80 (182)
T 1xiy_A            1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF   80 (182)
T ss_dssp             CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred             CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999985211        156    7999999 69999999999999999999 9999999999999 99999


Q ss_pred             E-EEEEeCCCHHhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEe
Q psy16151        130 E-VVAASVDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       130 ~-vi~Vs~d~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~  202 (299)
                      + |++||+|+++.+++|.+..       ++ +||+++|++++++++||+.....  |   ...|.+|||| +|+|++++.
T Consensus        81 ~~V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v  152 (182)
T 1xiy_A           81 DDIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQ  152 (182)
T ss_dssp             SEEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred             cEEEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEE
Confidence            5 9999999999999999876       55 69999999999999999975431  3   2568999999 999999997


Q ss_pred             ccCCC---------CCCHHHHHHHHhhc
Q psy16151        203 NDLPV---------GRSVDETLRLVQAF  221 (299)
Q Consensus       203 ~~~~~---------g~~~~evl~~l~~L  221 (299)
                      .....         ..+.+++++.|++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~vL~~L~~~  180 (182)
T 1xiy_A          153 EKDKQHNIQTDPYDISTVNNVKEFLKNN  180 (182)
T ss_dssp             CSSCCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred             eCCcccccccCcccCCCHHHHHHHHHhc
Confidence            65332         36889999988753

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.94  E-value=1e-26  Score=194.04  Aligned_cols=145  Identities=14%  Similarity=0.229  Sum_probs=117.0

Q ss_pred             cCCCCCCCCcEEeeee-CCCC-----ceEEcCcc-CCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCcE-EEEEe
Q psy16151         65 KLVSKPAPFWQGTAVV-DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTE-VVAAS  135 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~-~~~G-----~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv~-vi~Vs  135 (299)
                      ..+|+++|+|+|+++. +.+|     +.++|+++ +||++||+||+++|||+|+.| +|.|++++++|+++|++ |++||
T Consensus         7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is   86 (171)
T 2pwj_A            7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVA   86 (171)
T ss_dssp             ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEE
T ss_pred             ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3457799999998542 0246     89999996 999888777779999999999 99999999999999999 99999


Q ss_pred             CCCHHhHHHHhhcccccCCCCc--cceeeeecCchHHHHHhCCcccCC----CC-ceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151        136 VDSHFTHLAWVNTPRKEGGLGK--LKIPLLSDLTHKISLDYGVYLSDQ----GH-TLRGLFIIDRNGVLRQITMNDLPVG  208 (299)
Q Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~--~~~p~l~D~~~~~~~~~gv~~~~~----g~-~~p~~~lID~dG~I~~~~~~~~~~g  208 (299)
                      .|+++.+++|.+++       +  .+||+++|++++++++||+.....    |. ..|++|+|| ||+|++++.+....+
T Consensus        87 ~d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~  158 (171)
T 2pwj_A           87 INDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSD  158 (171)
T ss_dssp             SSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred             CCCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCC
Confidence            99999999999876       5  479999999999999999975431    21 357899999 999999998655443


Q ss_pred             ---CCHHHHHHH
Q psy16151        209 ---RSVDETLRL  217 (299)
Q Consensus       209 ---~~~~evl~~  217 (299)
                         .+.+++++.
T Consensus       159 ~~~~~~~~il~~  170 (171)
T 2pwj_A          159 VKVSGAETILGQ  170 (171)
T ss_dssp             CSSSSHHHHHHH
T ss_pred             CcccCHHHHHhc
Confidence               355555543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.7e-25  Score=180.26  Aligned_cols=134  Identities=13%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcC--ccCCCeEEEEEEeCCCCCC--chhhHHHHHHHHHHH-hhcCcEEEEEeCCC
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFV--CPTEILAFNDRLEEF-HQINTEVVAASVDS  138 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Ls--d~~Gk~vlL~F~~~~~cp~--C~~~~~~l~~l~~~~-~~~gv~vi~Vs~d~  138 (299)
                      .+++|+++|+|+++   +.+|++++|+  +++||++||+|| ++||++  |+.++|.|.+++++| +++++.|++|++|+
T Consensus         4 ~l~~G~~~p~f~l~---~~~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~   79 (150)
T 3fw2_A            4 KSEIGKYAPFFSLP---NAKGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV   79 (150)
T ss_dssp             TTSTTSBCCCCCEE---BTTCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS
T ss_pred             cccCCCcCCccEeE---CCCCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC
Confidence            58899999999998   6699999999  999999999999 899999  999999999999999 88899999999986


Q ss_pred             -HHhHHHHhhcccccCCCCccceeeeecC---chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151        139 -HFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~ev  214 (299)
                       ++..++|.+.+       +++||++.|.   +..+++.||+.      ..|++||||++|+|++++.       ..+++
T Consensus        80 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l  139 (150)
T 3fw2_A           80 DKQQWKDAIKRD-------TLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL-------RGEEL  139 (150)
T ss_dssp             CHHHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHH
T ss_pred             CHHHHHHHHHHh-------CCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC-------CHHHH
Confidence             46677777665       8899999998   57999999996      5699999999999999873       44555


Q ss_pred             HHHHhhc
Q psy16151        215 LRLVQAF  221 (299)
Q Consensus       215 l~~l~~L  221 (299)
                      .+.++.+
T Consensus       140 ~~~l~~l  146 (150)
T 3fw2_A          140 KKKIENI  146 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.93  E-value=2.1e-25  Score=187.75  Aligned_cols=162  Identities=14%  Similarity=0.089  Sum_probs=130.6

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC------
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------  136 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~------  136 (299)
                      ..+.+|+.+|+|++.   +.+|+.++|++++||++||+|| ++||++|..+++.|.+++++|+++ +.|++|+.      
T Consensus         5 ~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~   79 (188)
T 2cvb_A            5 PELPLESPLIDAELP---DPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKY   79 (188)
T ss_dssp             CCCCTTCBCCCCEEE---CTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTC
T ss_pred             CcCCCCCCCCCceee---cCCCCEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccc
Confidence            368899999999998   6699999999999999999999 899999999999999999999987 99999998      


Q ss_pred             --CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC----CCCCC
Q psy16151        137 --DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL----PVGRS  210 (299)
Q Consensus       137 --d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~----~~g~~  210 (299)
                        |+.+...+|.+.+       +++||++.|.+.++++.||+.      ..|++||||++|+|+++.....    ....+
T Consensus        80 ~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~  146 (188)
T 2cvb_A           80 PEDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQ  146 (188)
T ss_dssp             GGGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCC
T ss_pred             cccCHHHHHHHHHHh-------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEEEecCCccccccccC
Confidence              5667788888776       789999999999999999986      5699999999999998842210    11124


Q ss_pred             HHHHHHHHhhccCCCCCCccccccceecccee
Q psy16151        211 VDETLRLVQAFHDPLRTGAINGLSLLVIGLFQ  242 (299)
Q Consensus       211 ~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~  242 (299)
                      .+++.+.++.+........-..++-||+.+++
T Consensus       147 ~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~  178 (188)
T 2cvb_A          147 SHDLEAAIEALLRGEEPPLKEAPAIGCTIKWR  178 (188)
T ss_dssp             CCHHHHHHHHHHTTCCCCSSCCCCCSEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCCcccCCCCceEEEec
Confidence            56777777777554433333444556665554

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.93  E-value=5.7e-25  Score=182.24  Aligned_cols=148  Identities=12%  Similarity=0.140  Sum_probs=121.9

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCC-CchhhHHHHHHHHHHHhhcC--cEEEEEeCC-
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQIN--TEVVAASVD-  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp-~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d-  137 (299)
                      ...+.+|+.+|+|+|.   +.+|++++|++++||++||+|| ++||+ +|+.+++.|.++++++++++  ++||+||+| 
T Consensus         4 ~~~l~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~   79 (174)
T 1xzo_A            4 QIKDPLNYEVEPFTFQ---NQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   79 (174)
T ss_dssp             CCCSCCCEECCCCEEE---CTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCcCccccccCCcEEE---cCCCCEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC
Confidence            3468899999999998   6699999999999999999999 89999 99999999999999999876  999999997 


Q ss_pred             ---CHHhHHHHhhcccccCCCCccce---eeeecCchHHHHHhCCc-----cc-----CCCCceeEEEEEeCCCcEEEEE
Q psy16151        138 ---SHFTHLAWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGVY-----LS-----DQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~~~---p~l~D~~~~~~~~~gv~-----~~-----~~g~~~p~~~lID~dG~I~~~~  201 (299)
                         +++..++|.+.+       +++|   +++.|++.++.+.|++.     ..     ......|++||||++|+|++++
T Consensus        80 ~~d~~~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~  152 (174)
T 1xzo_A           80 ENDKPKQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY  152 (174)
T ss_dssp             TTCCHHHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred             CCCCHHHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEE
Confidence               567788888776       6666   99999888888777641     10     0113568999999999999998


Q ss_pred             eccCCCCCCHHHHHHHHhhcc
Q psy16151        202 MNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       202 ~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+...  .+.+++++.++.+.
T Consensus       153 ~g~~~--~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          153 NGVEN--TPYDDIISDVKSAS  171 (174)
T ss_dssp             ESSSS--CCHHHHHHHHHHHT
T ss_pred             cCCCC--CCHHHHHHHHHHHH
Confidence            54432  35788888888764

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.93  E-value=3.6e-25  Score=177.43  Aligned_cols=132  Identities=12%  Similarity=0.057  Sum_probs=114.2

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHH---HHHHHhhcCcEEEEEeCC-CHHh
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVD-SHFT  141 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~---l~~~~~~~gv~vi~Vs~d-~~~~  141 (299)
                      ++|+++|+|+++   +.+|+.++|++++||++||+|| ++||++|..++|.|.+   ++++++++++.|++|++| +.+.
T Consensus         2 ~~G~~~p~f~l~---~~~g~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~   77 (142)
T 3ewl_A            2 NAGMKAADFTYV---TVHGDNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREE   77 (142)
T ss_dssp             CTTSBCCCCEEE---CTTCCEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHH
T ss_pred             CCCCcCCCCEEE---CCCCCEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHH
Confidence            579999999998   6699999999999999999999 9999999999999998   999999989999999998 4666


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHH--HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~--~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      ..+|.+.+       +++||++.|.++.+..  .|++.      ..|++||||++|+|++..       ...+++.+.++
T Consensus        78 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~-------~~~~~l~~~l~  137 (142)
T 3ewl_A           78 WATKAVYM-------PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILKD-------TSMEQLIDYLA  137 (142)
T ss_dssp             HHHHHTTS-------CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEECS-------CCHHHHHHHHH
T ss_pred             HHHHHHHc-------CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEecC-------CCHHHHHHHHH
Confidence            67777665       8899999999988877  89986      569999999999998732       35677777776


Q ss_pred             hc
Q psy16151        220 AF  221 (299)
Q Consensus       220 ~L  221 (299)
                      .+
T Consensus       138 ~~  139 (142)
T 3ewl_A          138 TQ  139 (142)
T ss_dssp             C-
T ss_pred             HH
Confidence            54

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.93  E-value=2.4e-25  Score=188.32  Aligned_cols=164  Identities=14%  Similarity=0.047  Sum_probs=130.7

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCe-EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-----
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-----  136 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~-vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-----  136 (299)
                      ..+.+|+.+|+|++.+  +.+|++++|++++||+ +||+|| ++||++|+.++|.|.+++++|+++++.|++|++     
T Consensus        16 ~~~~~g~~~p~f~l~~--~~~G~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~   92 (196)
T 2ywi_A           16 NMFPLGKQAPPFALTN--VIDGNVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQ   92 (196)
T ss_dssp             CCCCTTCBCCCCEEEE--TTTCCEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTT
T ss_pred             cCCCcCCcCCceeeee--cCCCCEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccc
Confidence            3588999999999861  4489999999999995 999998 999999999999999999999998999999998     


Q ss_pred             ---CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC-----CCC
Q psy16151        137 ---DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL-----PVG  208 (299)
Q Consensus       137 ---d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~-----~~g  208 (299)
                         |+.+..++|.+.+       +++||++.|.+..+++.|++.      ..|++||||++|+|++++....     ...
T Consensus        93 ~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~  159 (196)
T 2ywi_A           93 YPEDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIP  159 (196)
T ss_dssp             CGGGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCC
T ss_pred             ccccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCc
Confidence               5677788888876       789999999999999999986      5799999999999999864321     122


Q ss_pred             CCHHHHHHHHhhccCCCCCCccccccceecccee
Q psy16151        209 RSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQ  242 (299)
Q Consensus       209 ~~~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~  242 (299)
                      .+.+++.+.++.+.......+-.+++-||+.++.
T Consensus       160 ~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~  193 (196)
T 2ywi_A          160 VTGESIRAALDALLEGRPVPEKQKPSIGCSIKWK  193 (196)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCC
T ss_pred             cCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeec
Confidence            3567788888776543333333333455554443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.93  E-value=8.3e-25  Score=177.77  Aligned_cols=136  Identities=16%  Similarity=0.199  Sum_probs=115.8

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~  142 (299)
                      .+.+|+++|+|++.   +.+|+.++|++++||++||+|| ++||++|..++|.|.+++++++++++.|++|++|+ .+..
T Consensus         2 ~l~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~   77 (152)
T 2lrn_A            2 SLATGSVAPAITGI---DLKGNSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDW   77 (152)
T ss_dssp             CSCTTEECCCCEEE---CSSSCEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHH
T ss_pred             CccCCCcCCCceeE---cCCCCEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence            47889999999998   6689999999999999999999 99999999999999999999998899999999985 5566


Q ss_pred             HHHhhcccccCCCCccceeeeecC---chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      .+|.+..       +++||++.|+   +..+++.||+.      ..|++||||++|+|++.+.    .   .+++.+.++
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~----~---~~~l~~~l~  137 (152)
T 2lrn_A           78 KKAIEED-------KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKEL----R---GDDLYNTVE  137 (152)
T ss_dssp             HHHHHHH-------TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECC----C---TTHHHHHHH
T ss_pred             HHHHHHh-------CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeC----C---HHHHHHHHH
Confidence            6676655       7899999999   68999999986      5699999999999999862    1   235555555


Q ss_pred             hccC
Q psy16151        220 AFHD  223 (299)
Q Consensus       220 ~L~~  223 (299)
                      .+..
T Consensus       138 ~l~~  141 (152)
T 2lrn_A          138 KFVN  141 (152)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5443

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.93  E-value=1.8e-24  Score=175.17  Aligned_cols=140  Identities=18%  Similarity=0.172  Sum_probs=122.9

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~  142 (299)
                      .+++|+++|+|++.   + +|+.+++++++||++||+|| ++|||.|..+++.|.+++++++++|+.+++|++|. .+..
T Consensus         2 ~l~~G~~~P~f~l~---~-~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~   76 (152)
T 3gl3_A            2 SLDKGDKAPDFALP---G-KTGVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDA   76 (152)
T ss_dssp             CCCTTSBCCCCEEE---B-SSSEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHH
T ss_pred             CCCCCCcCCceEee---C-CCCeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHH
Confidence            47899999999997   6 88999999999999999999 99999999999999999999999999999999984 6667


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+|.+.+       +++|+++.|.+..+++.|++.      ..|++||||++|+|++.+.+.  ...+.+++.+.++++.
T Consensus        77 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~--~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           77 MKFLAQV-------PAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGF--RPADKEALEQQILAAL  141 (152)
T ss_dssp             HHHHHHS-------CCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESC--CTTTHHHHHHHHHHHT
T ss_pred             HHHHHHc-------CCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccC--CCcCHHHHHHHHHHHH
Confidence            7777765       889999999999999999996      568999999999999988543  2335678888887765


Q ss_pred             C
Q psy16151        223 D  223 (299)
Q Consensus       223 ~  223 (299)
                      .
T Consensus       142 ~  142 (152)
T 3gl3_A          142 G  142 (152)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.92  E-value=8.6e-25  Score=175.66  Aligned_cols=122  Identities=12%  Similarity=0.000  Sum_probs=106.4

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHH---HHHHHhhcCcEEEEEeCCCH-
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND---RLEEFHQINTEVVAASVDSH-  139 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~---l~~~~~~~gv~vi~Vs~d~~-  139 (299)
                      ...+|+++|+|+++   +.+|+.++|++++||++||+|| ++||++|+.++|.|.+   +++++++.++.|++|+.|+. 
T Consensus         4 ~~~~G~~ap~f~l~---~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~   79 (142)
T 3eur_A            4 KNRLGTKALNFTYT---LDSGVKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL   79 (142)
T ss_dssp             TTCTTSBCCCCEEE---ETTSCEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH
T ss_pred             hhcCCCccCCcEEE---cCCCCEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH
Confidence            46789999999998   5699999999999999999999 9999999999999999   99999999999999999874 


Q ss_pred             HhHHHHhhcccccCCCCccceeeeecCchH--HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~--~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      +...++.+.+       +..|+.+.|.+..  +++.|++.      ..|++||||++|+|++...
T Consensus        80 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  131 (142)
T 3eur_A           80 DEWKKHRNDF-------AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDA  131 (142)
T ss_dssp             HHHHHHGGGS-------CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHhc-------ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCC
Confidence            4444555443       7789999998754  78889986      5799999999999999874

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.92  E-value=2.2e-25  Score=179.37  Aligned_cols=121  Identities=13%  Similarity=0.147  Sum_probs=103.8

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~  141 (299)
                      ..+.+|+.+|+|++ +.   +|++++|++++||++||+|| ++||++|..++|.|.+++++|+++++.|++||+|+ .+.
T Consensus         5 ~~l~~G~~~P~f~l-~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~   79 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LG---NDAKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESI   79 (143)
T ss_dssp             BSSSTTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHH
T ss_pred             cccCCcccCCceEE-cC---CCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHH
Confidence            45889999999998 43   78999999999999999999 99999999999999999999998899999999995 556


Q ss_pred             HHHHhhcccccCCCCccce-eeeecCc---hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        142 HLAWVNTPRKEGGLGKLKI-PLLSDLT---HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~-p~l~D~~---~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .+++.+..       +++| +.+.|..   ..+++.|++.      ..|++||||++|+|++++
T Consensus        80 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           80 FTETVKID-------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HHHHHHHH-------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEES
T ss_pred             HHHHHHHh-------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEcc
Confidence            66777665       8889 8888874   6899999996      579999999999999886

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.92  E-value=6e-25  Score=179.29  Aligned_cols=137  Identities=18%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCcEEEEEeC-------CC
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------DS  138 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv~vi~Vs~-------d~  138 (299)
                      .|+++|+|+++++. .+|++++|++++||++||+|| ++||++|..+ +|.|.+++++|+++++.+++|++       ++
T Consensus         2 ~g~~aP~f~l~~~~-~~g~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            2 NAMKAPELQIQQWF-NSATDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CCEECCCCCEEEEE-SCSSCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCceehhhh-cCCCccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence            58999999998642 368999999999999999999 8999999997 99999999999988999999996       46


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCch-----HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-----KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDE  213 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~-----~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~e  213 (299)
                      .+..++|.+.+       +++||++.|.+.     .+++.||+.      ..|++||||++|+|++++.+.    ...++
T Consensus        80 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~  142 (158)
T 3eyt_A           80 PISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQMR------GTPSLLLIDKAGDLRAHHFGD----VSELL  142 (158)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTCC------SSSEEEEECTTSEEEEEEESC----CCHHH
T ss_pred             HHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCC----CCHHH
Confidence            77888888876       889999999887     799999986      568999999999999988543    24566


Q ss_pred             HHHHHhhcc
Q psy16151        214 TLRLVQAFH  222 (299)
Q Consensus       214 vl~~l~~L~  222 (299)
                      +.+.++.+.
T Consensus       143 l~~~i~~ll  151 (158)
T 3eyt_A          143 LGAEIATLL  151 (158)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666653

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.92  E-value=9e-25  Score=175.63  Aligned_cols=137  Identities=21%  Similarity=0.270  Sum_probs=118.5

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CHHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~~~  141 (299)
                      ..+.+|+++|+|++.   +.+|+.+++++++||++||+|| ++||++|..++|.|.+++++++++++.+++|+.| +.+.
T Consensus         3 ~~~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~   78 (148)
T 3hcz_A            3 APLLLGKKAPNLYMT---DTTGTYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEE   78 (148)
T ss_dssp             CCCCTTSBCCCCCCB---CTTSCBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHH
T ss_pred             CccCCCCcCCceEEe---cCCCCEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHH
Confidence            357899999999987   6689999999999999999999 9999999999999999999999989999999998 4667


Q ss_pred             HHHHhhcccccCCCCccc-eeeeecCchH--HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKLK-IPLLSDLTHK--ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~p~l~D~~~~--~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      .++|.+.+       +++ |+++.|+++.  +++.|++.      ..|+++|||++|+|++.+.+.    ...+++++.+
T Consensus        79 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l  141 (148)
T 3hcz_A           79 WLKFIRSK-------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDDFLVQY  141 (148)
T ss_dssp             HHHHHHHH-------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHHHHHHH
T ss_pred             HHHHHHHc-------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHHHHHHH
Confidence            77888776       677 9999999877  99999996      569999999999999887432    3556666655


Q ss_pred             hh
Q psy16151        219 QA  220 (299)
Q Consensus       219 ~~  220 (299)
                      ..
T Consensus       142 ~~  143 (148)
T 3hcz_A          142 EK  143 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.92  E-value=3.3e-24  Score=173.97  Aligned_cols=140  Identities=19%  Similarity=0.307  Sum_probs=121.8

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--HHhH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTH  142 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--~~~~  142 (299)
                      +.+|+++|+|++.   +.+|+.+++++++||++||+|| ++||++|..+++.|.++++++++.++.+++|++|+  .+..
T Consensus         2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~   77 (154)
T 3kcm_A            2 SLEENPAPDFTLN---TLNGEVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAV   77 (154)
T ss_dssp             -CTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHH
T ss_pred             CCCCCCCCCeEEE---cCCCCEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHH
Confidence            5789999999998   6699999999999999999999 99999999999999999999998899999999987  6677


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++|.+.+       +++||++.|.+..+++.|++.      ..|++||||++|+|++.+.+...  .+..++.+.++.+.
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~l~  142 (154)
T 3kcm_A           78 EEFFRKT-------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAME--WDHPEVIAFLNNEL  142 (154)
T ss_dssp             HHHHHHH-------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTC-
T ss_pred             HHHHHHc-------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCc--cccHHHHHHHHHHH
Confidence            8888776       889999999999999999996      56899999999999998754432  34578888887775


Q ss_pred             C
Q psy16151        223 D  223 (299)
Q Consensus       223 ~  223 (299)
                      .
T Consensus       143 ~  143 (154)
T 3kcm_A          143 S  143 (154)
T ss_dssp             -
T ss_pred             H
Confidence            4

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.91  E-value=5.2e-24  Score=171.16  Aligned_cols=135  Identities=14%  Similarity=0.233  Sum_probs=116.8

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcC--ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHH-hhcCcEEEEEeCCC-
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF-HQINTEVVAASVDS-  138 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Ls--d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~-~~~gv~vi~Vs~d~-  138 (299)
                      ..+++|+++|+|++.   +.+|+.++++  +++||++||+|| ++||++|..++|.|.++++++ +++|+.+++|++|+ 
T Consensus         3 ~~~~~g~~~p~~~l~---~~~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~   78 (148)
T 3fkf_A            3 AKVTVGKSAPYFSLP---NEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDID   78 (148)
T ss_dssp             --CCTTSBCCCCCEE---BTTSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSC
T ss_pred             ccccCCCcCCCeEee---CCCCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence            358899999999998   6699999999  999999999999 999999999999999999999 88899999999986 


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecC---chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      .+...+|.+.+       +++|+++.|.   +..+++.||+.      ..|+++|||++|+|++.+.       ..+++.
T Consensus        79 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~  138 (148)
T 3fkf_A           79 REAWETAIKKD-------TLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------QGEALT  138 (148)
T ss_dssp             HHHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHH
T ss_pred             HHHHHHHHHHc-------CCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------CHHHHH
Confidence            45666777655       8899999998   67999999996      5699999999999998863       566666


Q ss_pred             HHHhhc
Q psy16151        216 RLVQAF  221 (299)
Q Consensus       216 ~~l~~L  221 (299)
                      +.++.+
T Consensus       139 ~~l~~l  144 (148)
T 3fkf_A          139 GKLKEL  144 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666655

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.91  E-value=2.6e-24  Score=177.26  Aligned_cols=129  Identities=9%  Similarity=0.016  Sum_probs=102.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      .+++|+.+|+|+|+   +.+|+++++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|      
T Consensus         4 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~   79 (169)
T 2v1m_A            4 SHKSWNSIYEFTVK---DINGVDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQE   79 (169)
T ss_dssp             ---CCCSGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             cccCCcccccceee---cCCCCCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCC
Confidence            47789999999998   6699999999999999999999 7999999999999999999999999999999986      


Q ss_pred             --CHHhHHHH-hhcccccCCCCccceeeee--cCchHHHH-Hh--------CCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151        138 --SHFTHLAW-VNTPRKEGGLGKLKIPLLS--DLTHKISL-DY--------GVYLSDQGHTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       138 --~~~~~~~~-~~~~~~~~~~~~~~~p~l~--D~~~~~~~-~~--------gv~~~~~g~~~p~~~lID~dG~I~~~~~~  203 (299)
                        +++.+++| .+.+       +++||++.  |.++..+. .|        |+.... -...|++||||++|+|++++.+
T Consensus        80 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g  151 (169)
T 2v1m_A           80 PWAEAEIKKFVTEKY-------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSP  151 (169)
T ss_dssp             CSCHHHHHHHHHHHH-------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECT
T ss_pred             CCCHHHHHHHHHHhc-------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCC
Confidence              35677788 4665       78999996  66554332 23        543110 0124799999999999999754


Q ss_pred             c
Q psy16151        204 D  204 (299)
Q Consensus       204 ~  204 (299)
                      .
T Consensus       152 ~  152 (169)
T 2v1m_A          152 T  152 (169)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.91  E-value=1.6e-24  Score=177.01  Aligned_cols=136  Identities=13%  Similarity=0.133  Sum_probs=117.6

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCcEEEEEeC-------CC
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTEVVAASV-------DS  138 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv~vi~Vs~-------d~  138 (299)
                      .|.++|+|++.++  .+|+.++|++++||++||+|| ++||++|..+ +|.|.+++++|+++|+.|++|++       |+
T Consensus         5 ~g~~~p~~~~~~~--~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   81 (160)
T 3lor_A            5 DNAPLLELDVQEW--VNHEGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMT   81 (160)
T ss_dssp             TTCCBCCCCEEEE--SSSCCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCcccccc--cCCCccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCC
Confidence            6999999999842  478999999999999999999 8899999996 99999999999998999999997       57


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchH------HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK------ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVD  212 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~------~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~  212 (299)
                      .+..++|.+.+       +++||++.|.+..      +++.||+.      ..|++||||++|+|++++.+..    +.+
T Consensus        82 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~  144 (160)
T 3lor_A           82 PEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQV----DDF  144 (160)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCC----CHH
T ss_pred             HHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCcC----CHH
Confidence            88888888876       8899999999887      99999996      5699999999999999885432    456


Q ss_pred             HHHHHHhhcc
Q psy16151        213 ETLRLVQAFH  222 (299)
Q Consensus       213 evl~~l~~L~  222 (299)
                      ++.+.++.+.
T Consensus       145 ~l~~~i~~ll  154 (160)
T 3lor_A          145 VLGLLLGSLL  154 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666553

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.91  E-value=6.6e-24  Score=171.94  Aligned_cols=137  Identities=19%  Similarity=0.286  Sum_probs=120.0

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhHHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLA  144 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~~~  144 (299)
                      ++|+++|+|++.   +.+|+.+++++++||++||+|| ++|||+|..++|.|.+++++++++++.|++|+.|+ ++..++
T Consensus         1 ~~G~~~p~~~l~---~~~g~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~   76 (151)
T 2f9s_A            1 SEGSDAPNFVLE---DTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN   76 (151)
T ss_dssp             -CCEECCCCEEE---CTTCCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred             CCCCcCCcceeE---cCCCCEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence            369999999998   6699999999999999999999 99999999999999999999998899999999864 677788


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      |.+.+       +++||++.|.+..+++.|++.      ..|++||||++|+|++.+.+.    ...+++.+.++.+..
T Consensus        77 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~----~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A           77 FMKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGT----MTESMIHDYMNLIKP  138 (151)
T ss_dssp             HHHHH-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESC----CCHHHHHHHHHHHSC
T ss_pred             HHHHc-------CCCceEEECCchHHHHhcCCC------CCCeEEEECCCCcEEEEEeCC----CCHHHHHHHHHHHHh
Confidence            88776       789999999999999999986      568999999999999987532    256778888877654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=181.46  Aligned_cols=139  Identities=13%  Similarity=0.060  Sum_probs=107.6

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----  137 (299)
                      ...+++|+++|+|+|+   +.+|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|    
T Consensus        20 ~~~~~~g~~~p~f~l~---~~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~   95 (181)
T 2p31_A           20 FQSMQQEQDFYDFKAV---NIRGKLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQ   95 (181)
T ss_dssp             -------CCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTT
T ss_pred             cCcCCcCCccCceEee---cCCCCEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCC
Confidence            4468899999999998   6699999999999999999999 8999999999999999999999999999999986    


Q ss_pred             ----CHHhHHHHhhc-ccccCCCCccceeeeec--CchHHHH---HhCCcccCCCCcee-------EEEEEeCCCcEEEE
Q psy16151        138 ----SHFTHLAWVNT-PRKEGGLGKLKIPLLSD--LTHKISL---DYGVYLSDQGHTLR-------GLFIIDRNGVLRQI  200 (299)
Q Consensus       138 ----~~~~~~~~~~~-~~~~~~~~~~~~p~l~D--~~~~~~~---~~gv~~~~~g~~~p-------~~~lID~dG~I~~~  200 (299)
                          +.+..++|.+. +       +++||++.|  .++..+.   .|++.      ..|       ++||||++|+|+++
T Consensus        96 ~e~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A           96 QEPDSNKEIESFARRTY-------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             CCCSCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             CCCCCHHHHHHHHHhhc-------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEE
Confidence                56777888876 5       789999964  4433221   23332      245       89999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHhhc
Q psy16151        201 TMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       201 ~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+.    .+.+++.+.|+.+
T Consensus       163 ~~g~----~~~~~l~~~i~~l  179 (181)
T 2p31_A          163 WDPT----VSVEEVRPQITAL  179 (181)
T ss_dssp             ECTT----SCHHHHHHHHHTT
T ss_pred             eCCC----CCHHHHHHHHHHH
Confidence            7432    2467777777765

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.91  E-value=6.9e-24  Score=177.68  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             ccCCCCCCCCcEEeeeeCC--CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCc------EEEEEe
Q psy16151         64 FKLVSKPAPFWQGTAVVDG--QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT------EVVAAS  135 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~--~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv------~vi~Vs  135 (299)
                      .+.+|+++|+|+++   +.  +|++++|++++||++||+|| ++||++|+.++|.|.+++++|+++|+      .|++|+
T Consensus        30 ~~~~g~~~p~f~l~---~~~~~g~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~  105 (183)
T 3lwa_A           30 DEADRQQLPDIGGD---SLMEEGTQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGIN  105 (183)
T ss_dssp             CGGGCCCCCCCEEE---BSSSTTCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEE
T ss_pred             ccccCCCCCceecc---ccccCCcEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEE
Confidence            46789999999998   66  89999999999999999999 89999999999999999999999899      999999


Q ss_pred             CCC--HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151        136 VDS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDE  213 (299)
Q Consensus       136 ~d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~e  213 (299)
                      .|+  ++..++|.+.+       +++||++.|+++.+.+.|+.+..   ...|++||||++|+|++++.+.    ...++
T Consensus       106 ~d~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~----~~~~~  171 (183)
T 3lwa_A          106 VRDYSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVPA---SVIPTTIVLDKQHRPAAVFLRE----VTSKD  171 (183)
T ss_dssp             CSCCCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCCT---TCCSEEEEECTTSCEEEEECSC----CCHHH
T ss_pred             CCCCCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCCC---CCCCeEEEECCCCcEEEEEcCC----CCHHH
Confidence            987  77788888876       88999999999999999974321   2569999999999999987533    25667


Q ss_pred             HHHHHhhc
Q psy16151        214 TLRLVQAF  221 (299)
Q Consensus       214 vl~~l~~L  221 (299)
                      +.+.++.+
T Consensus       172 l~~~l~~l  179 (183)
T 3lwa_A          172 VLDVALPL  179 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776655

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.91  E-value=4.9e-24  Score=174.43  Aligned_cols=142  Identities=19%  Similarity=0.316  Sum_probs=122.2

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+.+|+++|+|++.   +.+|+.+++++++||++||+|| ++||++|..+++.|.++++++++.++.+++|+.|+  .
T Consensus        12 ~~~~~~G~~~p~f~l~---~~~g~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~   85 (158)
T 3hdc_A           12 APLVRTGALAPNFKLP---TLSGENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--R   85 (158)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--S
T ss_pred             CcccCCCCcCCCceeE---cCCCCEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--H
Confidence            3468899999999998   6699999999999999999999 99999999999999999999998899999999987  3


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|.+..       +++|+++.|.+..+++.|++.      ..|++||||++|+|++++.+.  ...+..++++.+...
T Consensus        86 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~--~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A           86 FPEKYRRA-------PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGG--IEWDAPKVVSYLKSL  150 (158)
T ss_dssp             CCGGGGGC-------CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESC--CCTTSHHHHHHHHTT
T ss_pred             HHHHHHHc-------CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCC--CccchHHHHHHHHhh
Confidence            55666654       789999999999999999996      568999999999999998554  334567888888776


Q ss_pred             cCC
Q psy16151        222 HDP  224 (299)
Q Consensus       222 ~~~  224 (299)
                      +.+
T Consensus       151 ~~~  153 (158)
T 3hdc_A          151 EGH  153 (158)
T ss_dssp             C--
T ss_pred             ccc
Confidence            543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.91  E-value=4.2e-24  Score=179.38  Aligned_cols=145  Identities=10%  Similarity=-0.017  Sum_probs=113.0

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC---
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD---  137 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d---  137 (299)
                      ....+++|+++|+|+++   +.+|++++|++++||++||+|| ++|||+|+.++|.|.+++++|++++++|++|++|   
T Consensus        17 ~~~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~   92 (183)
T 2obi_A           17 SRDDWRCARSMHEFSAK---DIDGHMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFG   92 (183)
T ss_dssp             --CCGGGCCSGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCST
T ss_pred             cccCCcccCcccceEEE---cCCCCEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCC
Confidence            34568899999999998   6699999999999999999999 8999999999999999999999999999999986   


Q ss_pred             -----CHHhHHHHhhcccccCCCCccceeeee--cCchHHH----HHh-------CCcccCCCCceeEEEEEeCCCcEEE
Q psy16151        138 -----SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKIS----LDY-------GVYLSDQGHTLRGLFIIDRNGVLRQ  199 (299)
Q Consensus       138 -----~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~----~~~-------gv~~~~~g~~~p~~~lID~dG~I~~  199 (299)
                           +++..++|.+.+       +++||++.  |.++..+    +.+       |+.... -...|++||||++|+|++
T Consensus        93 ~~e~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~-i~~~P~~~lid~~G~i~~  164 (183)
T 2obi_A           93 KQEPGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNA-IKWNFTKFLIDKNGCVVK  164 (183)
T ss_dssp             TCCCSCHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSS-CCSTTCEEEECTTSCEEE
T ss_pred             CCCCCCHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCccccc-ccccceEEEECCCCCEEE
Confidence                 567788888776       88999997  6655432    222       432100 012489999999999999


Q ss_pred             EEeccCCCCCCHHHHHHHHhhc
Q psy16151        200 ITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       200 ~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++.+.    .+.+++.+.|+.+
T Consensus       165 ~~~g~----~~~~~l~~~i~~l  182 (183)
T 2obi_A          165 RYGPM----EEPLVIEKDLPHY  182 (183)
T ss_dssp             EECTT----SCTHHHHTTSGGG
T ss_pred             EeCCC----CCHHHHHHHHHHh
Confidence            97432    2345666655543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.91  E-value=7e-24  Score=177.96  Aligned_cols=147  Identities=19%  Similarity=0.255  Sum_probs=123.6

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH--
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH--  139 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~--  139 (299)
                      ...+.+|+++|+|++.   +.+|++++|++++||++||+|| ++||++|+.+++.|.++++++++.++.|++|+.|..  
T Consensus        31 ~~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~  106 (186)
T 1jfu_A           31 LTMASAPLKLPDLAFE---DADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDP  106 (186)
T ss_dssp             CEECCSCCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCT
T ss_pred             hccccCCCcCCCcEeE---cCCCCEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCH
Confidence            3467889999999998   6699999999999999999999 999999999999999999999988999999999864  


Q ss_pred             HhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      +..++|.+.+       ++ .||++.|+++.+++.|++....  ...|++||||++|+|++++.+..  ..+.+++.+.+
T Consensus       107 ~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~l  175 (186)
T 1jfu_A          107 EKPKTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPA--EWASEDALKLI  175 (186)
T ss_dssp             THHHHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCC--CTTSHHHHHHH
T ss_pred             HHHHHHHHHc-------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecCC--ccCHHHHHHHH
Confidence            6678888776       66 5899999999999999985321  24689999999999999985432  23456777777


Q ss_pred             hhccC
Q psy16151        219 QAFHD  223 (299)
Q Consensus       219 ~~L~~  223 (299)
                      +.+..
T Consensus       176 ~~ll~  180 (186)
T 1jfu_A          176 RAATG  180 (186)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            77643

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.91  E-value=2.7e-24  Score=175.33  Aligned_cols=120  Identities=18%  Similarity=0.140  Sum_probs=104.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh-H
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT-H  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~-~  142 (299)
                      ....|+.+|+|++.   +.+|++++|++++||++||+|| ++|||+|+.++|.|.+++++|+++|+.|++|+.|+... .
T Consensus         8 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~   83 (152)
T 2lrt_A            8 DKIKEASIIDIQLK---DLKGNTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFW   83 (152)
T ss_dssp             SSSCTTCSCCCCEE---BTTSCEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHH
T ss_pred             hhccCCCCCCeEEE---cCCCCEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHH
Confidence            45679999999998   6699999999999999999999 78999999999999999999999999999999987542 2


Q ss_pred             HHHhhcccccCCCCccceeeeecCchH---HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHK---ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~---~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      +++.+         .++||++.|.++.   +++.||+.      ..|++||||++|+|++++.
T Consensus        84 ~~~~~---------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  131 (152)
T 2lrt_A           84 KTSAD---------NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGE  131 (152)
T ss_dssp             HHHHT---------TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETT
T ss_pred             HHHHh---------CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecC
Confidence            33321         4689999999876   99999986      4689999999999999873

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.91  E-value=5e-24  Score=179.43  Aligned_cols=130  Identities=12%  Similarity=0.036  Sum_probs=104.9

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----  137 (299)
                      ...+.+|+++|+|+++   +.+|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|    
T Consensus        20 ~~~~~~g~~~p~f~l~---~~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~   95 (185)
T 2gs3_A           20 FQSMRCARSMHEFSAK---DIDGHMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGK   95 (185)
T ss_dssp             SGGGGGCCCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTT
T ss_pred             hhhccCCCCcCCceeE---cCCCCEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCC
Confidence            3467889999999998   6699999999999999999999 8999999999999999999999999999999986    


Q ss_pred             ----CHHhHHHHhhcccccCCCCccceeeee--cCchH----HHHHh-------CCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        138 ----SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHK----ISLDY-------GVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       138 ----~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~----~~~~~-------gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                          +++..++|.+++       +++||++.  |.++.    +.+.+       |+... .-...|++||||++|+|+++
T Consensus        96 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A           96 QEPGSNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             CCCSCHHHHHHHHHHT-------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEE
T ss_pred             CCCCCHHHHHHHHHHc-------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEe
Confidence                356678888765       88999997  44443    33322       33210 00124899999999999999


Q ss_pred             Eec
Q psy16151        201 TMN  203 (299)
Q Consensus       201 ~~~  203 (299)
                      +.+
T Consensus       168 ~~g  170 (185)
T 2gs3_A          168 YGP  170 (185)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            854

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.91  E-value=5.7e-24  Score=177.75  Aligned_cols=123  Identities=20%  Similarity=0.330  Sum_probs=107.3

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCC--ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-CC
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DS  138 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G--~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-d~  138 (299)
                      ...+.+|+++|+|++++   .+|  +.+++++++||++||+|| ++|||+|..++|.|.+++++    |+.|++|++ |+
T Consensus        27 ~~~~~~G~~~P~f~l~~---~~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~   98 (176)
T 3kh7_A           27 LPSALIGKPFPAFDLPS---VQDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDD   98 (176)
T ss_dssp             STTTTTTSBCCCCEEEB---SSCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCC
T ss_pred             ccccccCCcCCCcEecc---cCCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCC
Confidence            44688999999999984   466  899999999999999999 99999999999999998765    899999995 66


Q ss_pred             HHhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~  205 (299)
                      ++...+|.+.+       +++|+ ++.|.+..+++.||+.      ..|++||||++|+|++.+.+..
T Consensus        99 ~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~  153 (176)
T 3kh7_A           99 NAAAIKWLNEL-------HNPYLLSISDADGTLGLDLGVY------GAPETYLIDKQGIIRHKIVGVV  153 (176)
T ss_dssp             HHHHHHHHHHT-------TCCCSEEEEETTCHHHHHHTCC------SSCEEEEECTTCBEEEEEESCC
T ss_pred             HHHHHHHHHHc-------CCCCceEEECCcchHHHHcCCC------CCCeEEEECCCCeEEEEEcCCC
Confidence            77888888876       78887 5889999999999996      4689999999999999885543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.91  E-value=2.5e-23  Score=168.57  Aligned_cols=136  Identities=17%  Similarity=0.239  Sum_probs=118.1

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--CCHHhH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DSHFTH  142 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d~~~~~  142 (299)
                      ..+|+++|+|++.   +.+|+.+++++++||++||+|| ++|||.|..+++.|.+++++++++++.|++|+.  |+.+..
T Consensus         2 ~~~G~~~p~~~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~   77 (153)
T 2l5o_A            2 SLDSKTAPAFSLP---DLHGKTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV   77 (153)
T ss_dssp             --CCTTCCSCEEE---CTTSCEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHH
T ss_pred             CCCCCCCCCcEee---cCCCCCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHH
Confidence            3579999999998   6699999999999999999999 899999999999999999999998999999994  667888


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+|.+.+       +++|+++.|.+..+++.||+.      ..|++||||++|+|+..+.+.    .+.+++.+.++.+
T Consensus        78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l  139 (153)
T 2l5o_A           78 RQYVKDY-------GLPFTVMYDADKAVGQAFGTQ------VYPTSVLIGKKGEILKTYVGE----PDFGKLYQEIDTA  139 (153)
T ss_dssp             HHHHHHT-------TCCSEEEECSSCHHHHHHTCC------SSSEEEEECSSSCCCEEEESS----CCHHHHHHHHHHH
T ss_pred             HHHHHHc-------CCCceEEcCchHHHHHHcCCC------ccCeEEEECCCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence            8888776       889999999999999999986      468999999999999887442    3566777766655

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.90  E-value=7e-24  Score=174.83  Aligned_cols=139  Identities=14%  Similarity=0.226  Sum_probs=106.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      .+++|+.+|+|++.   +.+|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|      
T Consensus         5 ~~~~g~~~p~f~l~---~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~   80 (170)
T 2p5q_A            5 TSKNPESVHDFTVK---DAKENDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEE   80 (170)
T ss_dssp             -----CCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred             cCCCCccccceEEE---cCCCCEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCC
Confidence            56789999999998   6699999999999999999999 7999999999999999999999999999999985      


Q ss_pred             --CHHhHHHHhh-cccccCCCCccceeee--ecCchHHH----H-----HhCCcccCCCCcee---EEEEEeCCCcEEEE
Q psy16151        138 --SHFTHLAWVN-TPRKEGGLGKLKIPLL--SDLTHKIS----L-----DYGVYLSDQGHTLR---GLFIIDRNGVLRQI  200 (299)
Q Consensus       138 --~~~~~~~~~~-~~~~~~~~~~~~~p~l--~D~~~~~~----~-----~~gv~~~~~g~~~p---~~~lID~dG~I~~~  200 (299)
                        +++..++|.+ .+       +++||++  .|.++..+    +     .+|+.    +...|   ++||||++|+|+++
T Consensus        81 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           81 PGTNDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             CSCHHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTT----CSCCCSTTCEEEECTTSCEEEE
T ss_pred             CCCHHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCcc----CCcccccccEEEECCCCCEEEe
Confidence              5677788887 44       7889999  57664432    1     22442    11346   99999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHhhc
Q psy16151        201 TMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       201 ~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+..    +.+++.+.++.+
T Consensus       150 ~~g~~----~~~~l~~~i~~l  166 (170)
T 2p5q_A          150 YYPTT----SPLSLERDIKQL  166 (170)
T ss_dssp             ECTTS----CGGGGHHHHHHH
T ss_pred             eCCCC----CHHHHHHHHHHH
Confidence            85432    334555555544

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.90  E-value=1.7e-23  Score=174.01  Aligned_cols=149  Identities=9%  Similarity=0.031  Sum_probs=115.7

Q ss_pred             CCCCCCC-CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCC-CchhhHHHHHHHHHHHhh--cCcEEEEEeCC---C
Q psy16151         66 LVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQ--INTEVVAASVD---S  138 (299)
Q Consensus        66 ~~G~~aP-dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp-~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d---~  138 (299)
                      .+|+++| +|+|+   |.+|++++|++++||++||+|| ++||| +|+.+++.|+++++++++  .+++||+||+|   +
T Consensus         2 ~~G~~~P~~f~l~---d~~G~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~   77 (170)
T 3me7_A            2 SLGTYVPGDITLV---DSYGNEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDT   77 (170)
T ss_dssp             CTTCBCCTTCEEE---ETTCCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCC
T ss_pred             CCCCcCCCCeEEE---cCCcCEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCC
Confidence            5799999 99998   6699999999999999999999 88897 699999999999999975  56999999987   4


Q ss_pred             HHhHHHHhhcccccCCCCccceeee--ec--CchHHHHHhCCcccCC--C-CceeEEEEEeCCCcEEEEEeccCCCCCCH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLL--SD--LTHKISLDYGVYLSDQ--G-HTLRGLFIIDRNGVLRQITMNDLPVGRSV  211 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l--~D--~~~~~~~~~gv~~~~~--g-~~~p~~~lID~dG~I~~~~~~~~~~g~~~  211 (299)
                      ++.+++|.+++    ++....|+++  .|  ...+++++||+.....  + ...|++||||++|+|+.++.+   ...+.
T Consensus        78 ~~~~~~~~~~~----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g---~~~~~  150 (170)
T 3me7_A           78 LEDIKRFQKEY----GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYG---VNYNY  150 (170)
T ss_dssp             HHHHHHHHHHT----TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEES---SSCCH
T ss_pred             HHHHHHHHHHc----CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeC---CCCCH
Confidence            66777777765    1112345444  34  2378999988754211  1 245789999999999988733   23468


Q ss_pred             HHHHHHHhhccCCC
Q psy16151        212 DETLRLVQAFHDPL  225 (299)
Q Consensus       212 ~evl~~l~~L~~~~  225 (299)
                      +++.+.|+++....
T Consensus       151 ~~i~~~l~~~~~~~  164 (170)
T 3me7_A          151 LEFVNALRLARGEG  164 (170)
T ss_dssp             HHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhhccc
Confidence            89999998886543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.90  E-value=3.6e-24  Score=180.70  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=109.0

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-----
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  137 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-----  137 (299)
                      ..+..+.++|+|+|+   |.+|++++|++++||+|||+|| ++|||+|+.++|.|++++++|+++|++||+|++|     
T Consensus        18 ~~~~~~~~~p~f~l~---d~~G~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~   93 (187)
T 3dwv_A           18 KKMSAASSIFDFEVL---DADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQ   93 (187)
T ss_dssp             --CTTCCSGGGSCCB---BTTSCBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSC
T ss_pred             hhhcCCCccCCeEEE---cCCCCEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCC
Confidence            357789999999998   6699999999999999999999 9999999999999999999999999999999987     


Q ss_pred             ---CHHhHHHHhhcccccCCCCccceeeee--cCchHHH-HHh--------CCcccCCCCcee---EEEEEeCCCcEEEE
Q psy16151        138 ---SHFTHLAWVNTPRKEGGLGKLKIPLLS--DLTHKIS-LDY--------GVYLSDQGHTLR---GLFIIDRNGVLRQI  200 (299)
Q Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~~~p~l~--D~~~~~~-~~~--------gv~~~~~g~~~p---~~~lID~dG~I~~~  200 (299)
                         +.+..++|.+.  ++    +++||++.  |.++..+ ..|        +++..   ...|   ++||||++|+|++.
T Consensus        94 e~~~~~~~~~~~~~--~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~---~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A           94 EPGNEEEIKEFVCT--KF----KAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT---KAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             SSSBTTHHHHSCCB--CC----CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSS---SSCCSTTCEEEECTTSCEEEE
T ss_pred             CCCCHHHHHHHHHh--cc----CCCCceeeccccCCcchhHHHHHHHhhcCCccCC---CccccceeEEEECCCCCEEEE
Confidence               35556666652  11    78899997  4443322 122        33311   1457   99999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHhhc
Q psy16151        201 TMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       201 ~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+.    ...+++.+.|+.+
T Consensus       165 ~~g~----~~~~~l~~~i~~l  181 (187)
T 3dwv_A          165 FSPG----ASVKDIEEKLIPL  181 (187)
T ss_dssp             ECTT----CCHHHHHHHHHHH
T ss_pred             ECCC----CCHHHHHHHHHHH
Confidence            7432    2456677776655

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.90  E-value=5.2e-23  Score=168.58  Aligned_cols=144  Identities=16%  Similarity=0.221  Sum_probs=119.0

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHh
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  141 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~  141 (299)
                      ..+.+|+++|+|++.   +.+|+.+++++++||++||+|| ++|||+|..++|.|.+++++++++++.+++|+.|+ .+.
T Consensus         6 ~~~~~g~~~p~~~l~---~~~g~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~   81 (165)
T 3or5_A            6 QADARPTPAPSFSGV---TVDGKPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPN   81 (165)
T ss_dssp             -CCCCCCBCCCCEEE---CTTSCEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHH
T ss_pred             hhhcCCCCCCCceee---CCCCCEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH
Confidence            357889999999998   6699999999999999999999 99999999999999999999999899999999886 677


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ..+|.+..       +++||++.|.+ ++.+.|+......-...|++||||++|+|++.+.+..    ..+++.+.++.+
T Consensus        82 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~  149 (165)
T 3or5_A           82 VKNYMKTQ-------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR----SKADFDRIVKMA  149 (165)
T ss_dssp             HHHHHHHH-------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCC----CHHHHHHHHHHH
T ss_pred             HHHHHHHc-------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence            78888776       88999999975 8889995432111125799999999999998874332    456666666655


Q ss_pred             c
Q psy16151        222 H  222 (299)
Q Consensus       222 ~  222 (299)
                      -
T Consensus       150 l  150 (165)
T 3or5_A          150 L  150 (165)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.90  E-value=1.7e-23  Score=175.36  Aligned_cols=143  Identities=13%  Similarity=0.147  Sum_probs=108.0

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      .-.+|..+|+|+|+   |.+|++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|+.||+|++|      
T Consensus        11 ~~~~~~~~p~f~l~---d~~G~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~   86 (180)
T 3kij_A           11 LKPKINSFYAFEVK---DAKGRTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESE   86 (180)
T ss_dssp             CCCCCCCGGGCEEE---BTTSCEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCC
T ss_pred             hcCCcCcccceEEe---cCCCCEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCC
Confidence            45579999999998   6699999999999999999999 8999999999999999999999999999999965      


Q ss_pred             --CHHhHHHHhhc-ccccCCCCccceeeeecCc--hH---HHHHhCCcccCCCCceeE----EEEEeCCCcEEEEEeccC
Q psy16151        138 --SHFTHLAWVNT-PRKEGGLGKLKIPLLSDLT--HK---ISLDYGVYLSDQGHTLRG----LFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       138 --~~~~~~~~~~~-~~~~~~~~~~~~p~l~D~~--~~---~~~~~gv~~~~~g~~~p~----~~lID~dG~I~~~~~~~~  205 (299)
                        +++..++|.+. +       +++||++.+.+  +.   ....|.....  + ..|+    +||||++|+|++++.+..
T Consensus        87 ~d~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~-~~p~~~~~~~lid~~G~i~~~~~g~~  156 (180)
T 3kij_A           87 PRPSKEVESFARKNY-------GVTFPIFHKIKILGSEGEPAFRFLVDSS--K-KEPRWNFWKYLVNPEGQVVKFWRPEE  156 (180)
T ss_dssp             CSCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTCCHHHHHHHHHH--T-CCCSSTTCEEEECTTSCEEEEECTTC
T ss_pred             CCCHHHHHHHHHHhc-------CCCCceeeeeeccCccccHHHHHHHhcC--C-CCccccceEEEECCCCCEEEEECCCC
Confidence              67778888877 6       88999976432  11   1111111100  0 2366    999999999999986554


Q ss_pred             CCCCCHHHHHHHHhh
Q psy16151        206 PVGRSVDETLRLVQA  220 (299)
Q Consensus       206 ~~g~~~~evl~~l~~  220 (299)
                      ....-...+.+.++.
T Consensus       157 ~~~~l~~~i~~lL~~  171 (180)
T 3kij_A          157 PIEVIRPDIAALVRQ  171 (180)
T ss_dssp             CGGGTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            433333444444443

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.90  E-value=1e-23  Score=178.21  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=109.8

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----  137 (299)
                      ...+..|+++|+|+|+   |.+|++++|++++||++||+|| ++|||+|+.++|.|++++++|++++++||+|++|    
T Consensus        19 ~s~~~~~~~~p~f~l~---~~~G~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~   94 (190)
T 2vup_A           19 GSHMSAASSIFDFEVL---DADHKPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGG   94 (190)
T ss_dssp             -----CCCSGGGSCCB---BTTSSBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTT
T ss_pred             cccCCCCCcccCeEEE---cCCCCEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCC
Confidence            3458889999999998   6699999999999999999999 8999999999999999999999999999999998    


Q ss_pred             ----CHHhHHHHh-hcccccCCCCccceeeee--cCchHH----HH-----HhCCcccCCCCcee------EEEEEeCCC
Q psy16151        138 ----SHFTHLAWV-NTPRKEGGLGKLKIPLLS--DLTHKI----SL-----DYGVYLSDQGHTLR------GLFIIDRNG  195 (299)
Q Consensus       138 ----~~~~~~~~~-~~~~~~~~~~~~~~p~l~--D~~~~~----~~-----~~gv~~~~~g~~~p------~~~lID~dG  195 (299)
                          +++..++|. +.+       +++||++.  |.++.+    .+     .|++.      ..|      ++||||++|
T Consensus        95 ~~~~~~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~------~~P~i~~~~~~~lid~~G  161 (190)
T 2vup_A           95 QEPGNEEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL------KTKAIKWNFTSFLIDRDG  161 (190)
T ss_dssp             CCCSCHHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG------GCCSCCSTTCEEEECTTS
T ss_pred             CCCCCHHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhcCCcC------CCccccccceEEEECCCC
Confidence                677788888 666       78999997  554443    21     24654      345      899999999


Q ss_pred             cEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        196 VLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       196 ~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +|++++.+..    ..+++.+.|+.+
T Consensus       162 ~i~~~~~g~~----~~~~l~~~i~~l  183 (190)
T 2vup_A          162 VPVERFSPGA----SVKDIEKKLIPL  183 (190)
T ss_dssp             CEEEEECTTC----CHHHHHHHHHHH
T ss_pred             cEEEEECCCC----CHHHHHHHHHHH
Confidence            9999874322    345666666554

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.90  E-value=3.2e-23  Score=169.86  Aligned_cols=137  Identities=16%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhh----cCcEEEEEeCCC----HH
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVDS----HF  140 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~----~gv~vi~Vs~d~----~~  140 (299)
                      .+|+|+|.   |.+|++++|++++||++||+|| ++|||+ |+.++|.|+++++++++    .+++|++||+|+    ++
T Consensus         2 ~ap~f~l~---~~~G~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLT---THTGERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE   77 (164)
T ss_dssp             CCCCCEEE---ETTSCEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred             CCCCeEEE---eCCCCEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence            57999998   6699999999999999999999 799998 99999999999999987    489999999986    66


Q ss_pred             hHHHHhhcccccCCCCccceeeee---cCchHHHHHhCCcccCC-----C----CceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ-----G----HTLRGLFIIDRNGVLRQITMNDLPVG  208 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~~gv~~~~~-----g----~~~p~~~lID~dG~I~~~~~~~~~~g  208 (299)
                      .+++|.+.+       +.+|+++.   |....+++.||+.....     +    ...+++||||++|+|++++.+.    
T Consensus        78 ~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~----  146 (164)
T 2ggt_A           78 AIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN----  146 (164)
T ss_dssp             HHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETT----
T ss_pred             HHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCC----
Confidence            788888776       78899984   54578999999863210     0    0112899999999999987433    


Q ss_pred             CCHHHHHHHHhhc
Q psy16151        209 RSVDETLRLVQAF  221 (299)
Q Consensus       209 ~~~~evl~~l~~L  221 (299)
                      .+.+++.+.++.+
T Consensus       147 ~~~~~l~~~l~~l  159 (164)
T 2ggt_A          147 KRKGEIAASIATH  159 (164)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            2456777776655

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.90  E-value=8.5e-23  Score=169.97  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=110.7

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCC-CchhhHHHHHHHHHHHhhc--CcEEEEEeCC----
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQI--NTEVVAASVD----  137 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp-~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d----  137 (299)
                      ..+|.++|+|+|.   |.+|++++|+||+||+|||+|| .+||| +|+.+++.|.++++++++.  ++++|+||+|    
T Consensus         6 ~P~~~~~PdF~L~---d~~G~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~D   81 (170)
T 4hde_A            6 KPLNWDLETFQFT---NQDGKPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLD   81 (170)
T ss_dssp             SCCCBCCCCCEEE---CTTSCEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTC
T ss_pred             cCCCCcCCCcEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccc
Confidence            3469999999998   7899999999999999999999 77886 7999999999999999865  4889999986    


Q ss_pred             CHHhHHHHhhcccccCCCCccceeeeecCch-HH----HHHhCCcccCC--C--CceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151        138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH-KI----SLDYGVYLSDQ--G--HTLRGLFIIDRNGVLRQITMNDLPVG  208 (299)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~-~~----~~~~gv~~~~~--g--~~~p~~~lID~dG~I~~~~~~~~~~g  208 (299)
                      +++.+++|.+.+..    ....|.++.+.+. .+    ...|+......  +  .+.+++||||++|+|+..+.+.  ..
T Consensus        82 tp~~l~~y~~~~~~----~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~--~~  155 (170)
T 4hde_A           82 KPENLKAFIQKFTE----DTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGI--SN  155 (170)
T ss_dssp             CHHHHHHHHTTTCS----CCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESS--SS
T ss_pred             cHHHHHHHHHHcCC----CCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCC--CC
Confidence            46777888876522    2456777776542 22    23455543321  1  1347899999999999887432  23


Q ss_pred             CCHHHHHHHHhhc
Q psy16151        209 RSVDETLRLVQAF  221 (299)
Q Consensus       209 ~~~~evl~~l~~L  221 (299)
                      ...+++++.++.|
T Consensus       156 ~~~~~l~~~ik~L  168 (170)
T 4hde_A          156 TPYEDIIRDMKRL  168 (170)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            4567888888766

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.90  E-value=4.4e-23  Score=167.47  Aligned_cols=138  Identities=20%  Similarity=0.233  Sum_probs=120.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC---CCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---DSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~---d~~~  140 (299)
                      .+.+|+++|+|++.   +.+|+.+++++++ |++||+|| ++||++|..+++.|.++++++   ++.+++|++   |+.+
T Consensus         4 ~l~~g~~~p~f~l~---~~~g~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~   75 (154)
T 3ia1_A            4 AVKPGEPLPDFLLL---DPKGQPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTRE   75 (154)
T ss_dssp             CCCSBEECCCCCEE---CTTSCEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHH
T ss_pred             cCCCCCcCCceEEE---CCCCCEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHH
Confidence            58899999999998   6699999999999 99999999 999999999999999999999   899999999   6777


Q ss_pred             hHHHHhhcccccCCCCccceeeeec---CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSD---LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D---~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      ..++|.+.+       +++||++.|   ....+++.||+.      ..|++||||++|+|++.+.+.    ...+++.+.
T Consensus        76 ~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~  138 (154)
T 3ia1_A           76 VVLEYMKTY-------PRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGR----AGREALLDA  138 (154)
T ss_dssp             HHHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESB----CCHHHHHHH
T ss_pred             HHHHHHHHc-------CCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCC----CCHHHHHHH
Confidence            788888776       889999998   678999999986      569999999999999987433    357788888


Q ss_pred             HhhccCCCC
Q psy16151        218 VQAFHDPLR  226 (299)
Q Consensus       218 l~~L~~~~~  226 (299)
                      |+.+.....
T Consensus       139 l~~~~~~~~  147 (154)
T 3ia1_A          139 LLLAGADLE  147 (154)
T ss_dssp             HHHTTCCC-
T ss_pred             HHhccCccc
Confidence            888765443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.90  E-value=6.2e-23  Score=164.07  Aligned_cols=134  Identities=11%  Similarity=0.253  Sum_probs=112.5

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----C
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----S  138 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----~  138 (299)
                      ..+.+|+++|+|++.   +.+|+.+++++ +||++||+|| ++||++|..+++.|.++++++++.++.+++|+.|    +
T Consensus         7 ~~~~~g~~~p~~~l~---~~~g~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~   81 (145)
T 3erw_A            7 AEEKQPAVPAVFLMK---TIEGEDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQN   81 (145)
T ss_dssp             -----CCSCCEEEEE---CTTSCEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSC
T ss_pred             ccccCCCcCCCceee---cCCCCEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCC
Confidence            357889999999998   66999999999 9999999999 9999999999999999999999789999999986    5


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      .+..++|.+.+       +++||++.|.+..+++.|++.      ..|+++|||++|+|++.+.+.    .+.+++.+.+
T Consensus        82 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l  144 (145)
T 3erw_A           82 QQVVEDFIKAN-------KLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGP----MTAEQLKEWT  144 (145)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESC----CCHHHHHHHH
T ss_pred             HHHHHHHHHHc-------CCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCC----cCHHHHHHhh
Confidence            66777777765       889999999999999999996      579999999999999887443    2445555443

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.90  E-value=7.6e-23  Score=174.50  Aligned_cols=150  Identities=17%  Similarity=0.214  Sum_probs=114.7

Q ss_pred             cccCCCCCC--CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhhc---CcEEEEEeC
Q psy16151         63 CFKLVSKPA--PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQI---NTEVVAASV  136 (299)
Q Consensus        63 ~~l~~G~~a--PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~~---gv~vi~Vs~  136 (299)
                      ....+|+++  |+|+|.   |.+|++++|++++||++||+|| ++|||+ |+.++|.|++++++++++   +++|++||+
T Consensus        11 ~~~~~g~~~~~p~f~l~---d~~G~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~   86 (200)
T 2b7k_A           11 ANRGYGKPSLGGPFHLE---DMYGNEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITC   86 (200)
T ss_dssp             -----CCCCCCCCCEEE---ETTSCEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEES
T ss_pred             hHhccCCCCcCCCEEEE---cCCCCEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEEC
Confidence            346778886  999998   6689999999999999999999 899997 999999999999999854   899999999


Q ss_pred             C----CHHhHHHHhhcccccCCCCccceeeeecC---chHHHHHhCCcccCC-----C-----CceeEEEEEeCCCcEEE
Q psy16151        137 D----SHFTHLAWVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQ-----G-----HTLRGLFIIDRNGVLRQ  199 (299)
Q Consensus       137 d----~~~~~~~~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~-----g-----~~~p~~~lID~dG~I~~  199 (299)
                      |    +++.+++|.+.+       +.+|+.+.+.   ...+++.||+.....     |     ...|++||||++|+|++
T Consensus        87 D~~~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~  159 (200)
T 2b7k_A           87 DPARDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVD  159 (200)
T ss_dssp             CTTTCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEE
T ss_pred             CCCCCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEE
Confidence            8    577788888876       6788887643   478999999963110     1     13468999999999999


Q ss_pred             EEeccCCCCCCHHHHHHHHhhccC
Q psy16151        200 ITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       200 ~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .+.+........+.+.+.++.+..
T Consensus       160 ~~~g~~~~~~~~~~i~~~l~~l~~  183 (200)
T 2b7k_A          160 ALGRNYDEKTGVDKIVEHVKSYVP  183 (200)
T ss_dssp             EECTTCCTTHHHHHHHHHHHHCCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhhh
Confidence            985544444445666677776644

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.90  E-value=6.5e-23  Score=176.26  Aligned_cols=146  Identities=9%  Similarity=-0.001  Sum_probs=105.7

Q ss_pred             ccCCCCCCCCcEEeeeeCCC-CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-----
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~-G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-----  137 (299)
                      ....++.+|+|+++   +.+ |++++|++++||+|||+|| ++|||+|+.++|.|++++++|+++|++||+|++|     
T Consensus        19 ~~~~~~~~p~f~l~---~~~~G~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~   94 (208)
T 2f8a_A           19 YFQSMQSVYAFSAR---PLAGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ   94 (208)
T ss_dssp             ---CCCCGGGCEEC---BTTCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTT
T ss_pred             chhhcCccCceEee---eCCCCCCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCccccc
Confidence            35568899999998   557 9999999999999999999 9999999999999999999999999999999986     


Q ss_pred             ---CHHhHHHHhhccc---ccCCCCccceeeeecCc--hH----HHH----HhCC--------ccc-------C---CC-
Q psy16151        138 ---SHFTHLAWVNTPR---KEGGLGKLKIPLLSDLT--HK----ISL----DYGV--------YLS-------D---QG-  182 (299)
Q Consensus       138 ---~~~~~~~~~~~~~---~~~~~~~~~~p~l~D~~--~~----~~~----~~gv--------~~~-------~---~g-  182 (299)
                         +++.+++|++..+   ++    +++||++.|.+  +.    +..    .++.        ...       .   .+ 
T Consensus        95 e~d~~~~i~~f~~~~~~~~~~----~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  170 (208)
T 2f8a_A           95 ENAKNEEILNSLKYVRPGGGF----EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV  170 (208)
T ss_dssp             TCSCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred             CCCCHHHHHHHHHhccccccc----ccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence               4567888887211   11    78999997532  22    222    2221        000       0   00 


Q ss_pred             CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       183 ~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ...|++||||++|+|++++.+..    +.+++.+.|+.+
T Consensus       171 ~~~p~tflID~~G~i~~~~~g~~----~~~~l~~~I~~l  205 (208)
T 2f8a_A          171 AWNFEKFLVGPDGVPLRRYSRRF----QTIDIEPDIEAL  205 (208)
T ss_dssp             CSTTCEEEECTTSCEEEEECTTS----CGGGGHHHHHHH
T ss_pred             ccCceEEEEcCCCcEEEEeCCCC----CHHHHHHHHHHH
Confidence            12489999999999999985433    234555555443

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=175.67  Aligned_cols=142  Identities=11%  Similarity=0.036  Sum_probs=106.9

Q ss_pred             cCCCCCCCCcEEeeeeCCC-CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         65 KLVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~-G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      ...+..+|+|+++   |.+ |++++|++|+||+|||+|| ++||++|+ ++|.|++++++|+++|++||+|++|      
T Consensus        29 ~~~~~~~pdF~l~---d~~~G~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e  103 (215)
T 2i3y_A           29 KDEKGTIYDYEAI---ALNKNEYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQE  103 (215)
T ss_dssp             CCCCCCGGGCEEE---BSSSSCEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             ccccCCcCCcEee---eCCCCCEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCC
Confidence            4457789999998   668 9999999999999999999 99999999 9999999999999999999999965      


Q ss_pred             --CHHhHHHHhh------cccccCCCCccceeeeecCc--hH----HHHHh----C----Cccc-------C---CCC-c
Q psy16151        138 --SHFTHLAWVN------TPRKEGGLGKLKIPLLSDLT--HK----ISLDY----G----VYLS-------D---QGH-T  184 (299)
Q Consensus       138 --~~~~~~~~~~------~~~~~~~~~~~~~p~l~D~~--~~----~~~~~----g----v~~~-------~---~g~-~  184 (299)
                        +.+.+++|++      .+       +++||++.|.+  +.    +...+    .    +...       .   ... .
T Consensus       104 ~~~~~~i~~f~~~~~~~~~~-------~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~  176 (215)
T 2i3y_A          104 PGDNKEILPGLKYVRPGGGF-------VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRW  176 (215)
T ss_dssp             CSCHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCS
T ss_pred             CCCHHHHHHHHHhccchhcc-------CccceeEeeeccCCcccchHHHHHHhhCccccccccccccccccccccccccc
Confidence              4567888887      44       88999998643  22    22211    0    1100       0   000 1


Q ss_pred             eeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       185 ~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .|++||||++|+|++++.+..    ..+++.+.|+.+.
T Consensus       177 npttfLID~~G~vv~~~~g~~----~~~~l~~~I~~ll  210 (215)
T 2i3y_A          177 NFEKFLVGPDGIPVMRWSHRA----TVSSVKTDILAYL  210 (215)
T ss_dssp             TTCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHG
T ss_pred             CceEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence            278999999999999984332    3466766666653

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.89  E-value=5.6e-23  Score=166.70  Aligned_cols=132  Identities=13%  Similarity=0.103  Sum_probs=110.5

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  149 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~  149 (299)
                      ++|+|.+    ..+|++++|++++||++||+|| ++|||+|+.++|.|.++++++++.++.|++|++|+++...+|.+.+
T Consensus         4 pa~~~~~----~~~G~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~   78 (151)
T 3raz_A            4 SADELAG----WKDNTPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT   78 (151)
T ss_dssp             ---CEEE----TTTCCEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS
T ss_pred             Ccchhhc----ccCCCEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc
Confidence            4455553    2589999999999999999999 9999999999999999999998889999999999999999999886


Q ss_pred             cccCCCCccceeeeecCc---hHHHHHhC--CcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        150 RKEGGLGKLKIPLLSDLT---HKISLDYG--VYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       150 ~~~~~~~~~~~p~l~D~~---~~~~~~~g--v~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                             +++||++.|..   ..+++.||  +.      ..|++||||++|+|++++.+.    ...+++.+.++.+..
T Consensus        79 -------~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l~~  140 (151)
T 3raz_A           79 -------PVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGE----VNEKSLTDAVKLAHS  140 (151)
T ss_dssp             -------CCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSC----CCHHHHHHHHHHHHT
T ss_pred             -------CCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCC----CCHHHHHHHHHHHHH
Confidence                   88999998763   67889999  53      569999999999999987433    246777777777654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.89  E-value=1.4e-23  Score=173.33  Aligned_cols=143  Identities=20%  Similarity=0.264  Sum_probs=118.6

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhhc---CcEEEEEeCC--
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQI---NTEVVAASVD--  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~~---gv~vi~Vs~d--  137 (299)
                      ...+|+++|+|++.   +.+| .++|++++||++||+|| ++||++ |+.++|.|.+++++|+++   +++|++|++|  
T Consensus         9 ~~~~G~~~p~f~l~---~~~g-~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~   83 (172)
T 2k6v_A            9 TRLLNPKPVDFALE---GPQG-PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPE   83 (172)
T ss_dssp             EEEEEEEECCCEEE---CSSS-EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTT
T ss_pred             ccccCCCCCCeEEE---cCCC-CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCC
Confidence            34569999999998   6689 99999999999999999 889997 999999999999999875   7999999976  


Q ss_pred             --CHHhHHHHhhcccccCCCCccceeeeecCc---hHHHHHhCCcccCCC---------CceeEEEEEeCCCcEEEEEec
Q psy16151        138 --SHFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG---------HTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~~gv~~~~~g---------~~~p~~~lID~dG~I~~~~~~  203 (299)
                        +++..++|.+.+       +.+|+++.|++   .++++.||+......         ...|++|||| +|+|++++.+
T Consensus        84 ~d~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g  155 (172)
T 2k6v_A           84 RDPPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSP  155 (172)
T ss_dssp             TCCHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECH
T ss_pred             CCCHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECC
Confidence              467788888876       78999999987   689999998543210         1458999999 9999999854


Q ss_pred             cCCCCCCHHHHHHHHhhc
Q psy16151        204 DLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       204 ~~~~g~~~~evl~~l~~L  221 (299)
                      ..  ..+.+++.+.++.+
T Consensus       156 ~~--~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          156 DK--AEATDRVVADLQAL  171 (172)
T ss_dssp             HH--HTCHHHHHHHHHHC
T ss_pred             CC--CCCHHHHHHHHHHh
Confidence            33  23677888877764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.89  E-value=1.8e-22  Score=163.33  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=116.0

Q ss_pred             ccCCCCCCC-CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHh
Q psy16151         64 FKLVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT  141 (299)
Q Consensus        64 ~l~~G~~aP-dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~  141 (299)
                      .+.+|+++| +|++.   +.+|+.+++++++||++||+|| ++||+.|..+++.|.+++++++++++.+++|+.|+ .+.
T Consensus         2 ~l~~G~~~p~~f~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~   77 (152)
T 2lja_A            2 SLRSGNPSAASFSYP---DINGKTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKA   77 (152)
T ss_dssp             CTTTTCCCSSSCEEE---ETTTEEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHH
T ss_pred             ccccCCCCCcccEee---cCCCCEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHH
Confidence            478999999 99998   5689999999999999999999 99999999999999999999998899999999986 456


Q ss_pred             HHHHhhcccccCCCCccc-eeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        142 HLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ..+|.+..       +++ ++++.|.+.++++.|++.      ..|++||||++|+|++...+    ....+++.+.++.
T Consensus        78 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g----~~~~~~l~~~l~~  140 (152)
T 2lja_A           78 WENMVTKD-------QLKGIQLHMGTDRTFMDAYLIN------GIPRFILLDRDGKIISANMT----RPSDPKTAEKFNE  140 (152)
T ss_dssp             HHHHHHHH-------TCCSEEEECSSCTHHHHHTTCC------SSCCEEEECTTSCEEESSCC----CTTCHHHHHHHHH
T ss_pred             HHHHHHhc-------CCCCceeecCcchhHHHHcCcC------CCCEEEEECCCCeEEEccCC----CCCHHHHHHHHHH
Confidence            66777665       444 477788889999999986      46899999999999987532    2245666666666


Q ss_pred             ccC
Q psy16151        221 FHD  223 (299)
Q Consensus       221 L~~  223 (299)
                      +..
T Consensus       141 ~~~  143 (152)
T 2lja_A          141 LLG  143 (152)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            543

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=165.70  Aligned_cols=135  Identities=15%  Similarity=0.225  Sum_probs=109.8

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhh----cCcEEEEEeCC----CHHhH
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQ----INTEVVAASVD----SHFTH  142 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~----~gv~vi~Vs~d----~~~~~  142 (299)
                      |+|+|.   |.+|++++|++++||++||+|| ++||++ |+.++|.|++++++|++    .+++|++||+|    +++..
T Consensus         7 p~f~l~---~~~G~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLL---DHRGRARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM   82 (171)
T ss_dssp             SCCEEE---ETTSCEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred             CCeEEE---eCCCCEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence            899998   6689999999999999999999 899997 99999999999999975    58999999997    46778


Q ss_pred             HHHhhcccccCCCCccceeeeecCc---hHHHHHhCCcccCCC---------CceeEEEEEeCCCcEEEEEeccCCCCCC
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG---------HTLRGLFIIDRNGVLRQITMNDLPVGRS  210 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~~gv~~~~~g---------~~~p~~~lID~dG~I~~~~~~~~~~g~~  210 (299)
                      ++|.+.+       +.+|+++.|..   ..+++.||+......         ...|++||||++|+|++++.+..    +
T Consensus        83 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~  151 (171)
T 2rli_A           83 ARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----S  151 (171)
T ss_dssp             HHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----C
T ss_pred             HHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----C
Confidence            8888776       78899998753   579999998643200         12358999999999999975432    4


Q ss_pred             HHHHHHHHhhc
Q psy16151        211 VDETLRLVQAF  221 (299)
Q Consensus       211 ~~evl~~l~~L  221 (299)
                      .+++.+.++.+
T Consensus       152 ~~~l~~~l~~l  162 (171)
T 2rli_A          152 AEQISDSVRRH  162 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56666666554

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.89  E-value=3.2e-22  Score=171.88  Aligned_cols=140  Identities=11%  Similarity=0.065  Sum_probs=103.3

Q ss_pred             CCCCCCCCcEEeeeeCCC-CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-------
Q psy16151         66 LVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-------  137 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~-G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-------  137 (299)
                      .....+|+|+|+   |.+ |+.++|++|+||+|||+|| ++|||+| .++|.|++++++|+++|++||+||+|       
T Consensus        12 ~~~~~~pdF~l~---d~~~G~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~   86 (207)
T 2r37_A           12 GISGTIYEYGAL---TIDGEEYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEP   86 (207)
T ss_dssp             ---CCGGGCEEE---BTTSSCEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCC
T ss_pred             cccCccCCeEee---eCCCCCEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCC
Confidence            345789999998   668 9999999999999999999 9999999 79999999999999999999999964       


Q ss_pred             -CHHhHHHHhh------cccccCCCCccceeeeecCc--hH----HHHHh----C----Cccc-------C---CCC-ce
Q psy16151        138 -SHFTHLAWVN------TPRKEGGLGKLKIPLLSDLT--HK----ISLDY----G----VYLS-------D---QGH-TL  185 (299)
Q Consensus       138 -~~~~~~~~~~------~~~~~~~~~~~~~p~l~D~~--~~----~~~~~----g----v~~~-------~---~g~-~~  185 (299)
                       +.+.+++|++      .+       +++||++.|.+  +.    +...+    +    +...       .   ... ..
T Consensus        87 ~~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~  159 (207)
T 2r37_A           87 GENSEILPTLKYVRPGGGF-------VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWN  159 (207)
T ss_dssp             SCHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCST
T ss_pred             CCHHHHHHHHHhcchhhcc-------CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCccccc
Confidence             4567888887      54       88999997643  22    22211    1    1100       0   000 12


Q ss_pred             eEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       186 p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |++||||++|+|++++.+..    ..+++.+.|+.+
T Consensus       160 ~ttflID~~G~i~~~~~g~~----~~~~l~~~I~~l  191 (207)
T 2r37_A          160 FEKFLVGPDGIPIMRWHHRT----TVSNVKMDILSY  191 (207)
T ss_dssp             TCEEEECTTSCEEEEECTTS----CHHHHHHHHHHH
T ss_pred             ceEEEECCCCcEEEEECCCC----CHHHHHHHHHHH
Confidence            78999999999999985432    345666666554

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.3e-23  Score=172.89  Aligned_cols=133  Identities=9%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------C
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------S  138 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~  138 (299)
                      -|..+|+|+|+   |.+|++++|++++||++||+|| ++||++|+ ++|.|++++++|+++|+.|++|++|        +
T Consensus         8 ~~~~~~~f~l~---d~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~   82 (171)
T 3cmi_A            8 HMSEFYKLAPV---DKKGQPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGS   82 (171)
T ss_dssp             --CGGGGCCCB---BTTSCBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------
T ss_pred             chhheeeeEEE---cCCCCEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCC
Confidence            36789999998   6799999999999999999999 99999999 9999999999999999999999984        4


Q ss_pred             HHhHHHHh-hcccccCCCCccceeeeecCc--hH-HH--------HHhCCcccCCCCcee------EEEEEeCCCcEEEE
Q psy16151        139 HFTHLAWV-NTPRKEGGLGKLKIPLLSDLT--HK-IS--------LDYGVYLSDQGHTLR------GLFIIDRNGVLRQI  200 (299)
Q Consensus       139 ~~~~~~~~-~~~~~~~~~~~~~~p~l~D~~--~~-~~--------~~~gv~~~~~g~~~p------~~~lID~dG~I~~~  200 (299)
                      ++..++|. +.+       +++||++.|.+  +. +.        +.||+.      ..|      ++||||++|+|+++
T Consensus        83 ~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           83 DEEIAQFCQLNY-------GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHHHHHHhcc-------CCCceEEeeccCCCccchHHHHHHHhccCCcC------CCCcccccceEEEECCCCCEEEE
Confidence            55667777 554       78999998754  22 22        235554      346      89999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHhhc
Q psy16151        201 TMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       201 ~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+..    +.+++.+.++.+
T Consensus       150 ~~g~~----~~~~l~~~i~~l  166 (171)
T 3cmi_A          150 YSSLT----KPSSLSETIEEL  166 (171)
T ss_dssp             ECTTS----CGGGGHHHHHHH
T ss_pred             eCCCC----CHHHHHHHHHHH
Confidence            85432    234455554444

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.89  E-value=1.3e-22  Score=162.72  Aligned_cols=137  Identities=13%  Similarity=0.162  Sum_probs=116.0

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------C
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------S  138 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------~  138 (299)
                      +++|+++|+|+++.. +.+|+.+++++++||++||+|| ++||++|..+++.|.+++++++++ +.+++|++|      +
T Consensus         1 l~~g~~~P~f~~~~~-~~~g~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~   77 (148)
T 2b5x_A            1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLD   77 (148)
T ss_dssp             CCTTCBCCCCCCCSE-EESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSS
T ss_pred             CCCCCCCCCCccccc-cccCcccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccC
Confidence            468999999998421 4588999999999999999999 899999999999999999999876 999999987      5


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      .+...+|.+.+       +++||++.|.+..+++.||+.      ..|+++|+|++|++++.+.+.    ...+++.+.+
T Consensus        78 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l  140 (148)
T 2b5x_A           78 PGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGG----SGMKMLEKRV  140 (148)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESC----STTHHHHHHH
T ss_pred             HHHHHHHHHHc-------CCCcceEECCchhHHHHhCCC------CCCEEEEECCCCcEEEEecCC----CCHHHHHHHH
Confidence            67777887765       789999999999999999996      568999999999999987543    2345666666


Q ss_pred             hhc
Q psy16151        219 QAF  221 (299)
Q Consensus       219 ~~L  221 (299)
                      +.+
T Consensus       141 ~~~  143 (148)
T 2b5x_A          141 NRV  143 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.89  E-value=3.6e-23  Score=170.19  Aligned_cols=134  Identities=12%  Similarity=0.128  Sum_probs=116.3

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-----
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----  137 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-----  137 (299)
                      ..+.+|+++|+|++.   +.+|+.+++++++||++||+|| ++||++|..++|.|.+++++++  ++.|++|+.|     
T Consensus         9 ~~~~~g~~~p~~~l~---~~~g~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~   82 (165)
T 3ha9_A            9 HSEEVLEREASFSLT---TIDGEVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEAL   82 (165)
T ss_dssp             HHHHHHHHHHCCCEE---BTTSCEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHH
T ss_pred             ccccccCcCCCCEee---cCCCCEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccc
Confidence            356789999999998   6699999999999999999999 9999999999999999999998  8999999997     


Q ss_pred             --------------CHHhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        138 --------------SHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       138 --------------~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                                    +.+..++|.+.+       ++ +||++.| +..+++.|++.      ..|++||||++|+|++.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v~------~~P~~~lid~~G~i~~~--  146 (165)
T 3ha9_A           83 KALGLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNVR------SIDYIVIMDKSSNVLYA--  146 (165)
T ss_dssp             HHHTCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTCC------SSSEEEEEETTCCEEEE--
T ss_pred             cccccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCCC------CceEEEEEcCCCcEEEe--
Confidence                          677788888776       77 9999999 99999999986      56899999999999982  


Q ss_pred             ccCCCCCCHHHHHHHHhhc
Q psy16151        203 NDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       203 ~~~~~g~~~~evl~~l~~L  221 (299)
                      +..   .+.+++.+.++.+
T Consensus       147 g~~---~~~~~l~~~l~~l  162 (165)
T 3ha9_A          147 GTT---PSLGELESVIKSV  162 (165)
T ss_dssp             EES---CCHHHHHHHHHHC
T ss_pred             CCC---CCHHHHHHHHHHH
Confidence            221   1466777777665

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=1.1e-24  Score=178.22  Aligned_cols=141  Identities=18%  Similarity=0.210  Sum_probs=115.5

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHH-HHHHHh-hcCcEEEEEeCCCH-
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFND-RLEEFH-QINTEVVAASVDSH-  139 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~-l~~~~~-~~gv~vi~Vs~d~~-  139 (299)
                      ..+.+|+++|+|++.   +.+|+.+++++++||++||+|| ++|||+|+.++|.|.+ ++++++ +.++.+++|++|+. 
T Consensus         5 ~~l~~g~~~p~f~l~---~~~g~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~   80 (159)
T 2ls5_A            5 YIVRIGEMAPDFTIT---LTDGKQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL   80 (159)
Confidence            357899999999998   5689999999999999999999 9999999999999998 999998 77999999998864 


Q ss_pred             HhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +..++|.+.+       +++||++.|++..+++.|++...    ..|++||||++|+|++.+.+ . ....+.++++.+.
T Consensus        81 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~----~~P~~~lid~~G~i~~~~~g-~-~~~~l~~~l~~l~  147 (159)
T 2ls5_A           81 EKVLAFAKST-------GVTYPLGLDPGADIFAKYALRDA----GITRNVLIDREGKIVKLTRL-Y-NEEEFASLVQQIN  147 (159)
Confidence            4566777665       78999999999999999996421    36899999999999988743 1 2223444444444


Q ss_pred             h
Q psy16151        220 A  220 (299)
Q Consensus       220 ~  220 (299)
                      +
T Consensus       148 ~  148 (159)
T 2ls5_A          148 E  148 (159)
Confidence            3

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.88  E-value=7e-22  Score=155.78  Aligned_cols=130  Identities=20%  Similarity=0.275  Sum_probs=110.3

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE------eCCCHHhHH
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA------SVDSHFTHL  143 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V------s~d~~~~~~  143 (299)
                      ++|+|++.   +.+|+.+++++++||++||+|| ++||++|..+++.|.++++++. .++.+++|      +.++.+...
T Consensus         1 ~~p~f~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~   75 (138)
T 4evm_A            1 EVADFELM---GVDGKTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHKGEQSEADFK   75 (138)
T ss_dssp             CCCCCEEE---BTTSCEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTSTTCCCHHHHH
T ss_pred             CCCcceeE---CCCCCEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCCchhhHHHHH
Confidence            58999998   6699999999999999999999 9999999999999999999854 58999999      344567777


Q ss_pred             HHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        144 AWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +|.+.+       ++ .||++.|.+..+++.||+.      ..|+++|||++|+|++.+.+.    ...+++.+.++.+
T Consensus        76 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l  137 (138)
T 4evm_A           76 NWYKGL-------DYKNLPVLVDPSGKLLETYGVR------SYPTQAFIDKEGKLVKTHPGF----MEKDAILQTLKEL  137 (138)
T ss_dssp             HHHTTC-------CCTTCCEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEEESC----CCHHHHHHHHHHC
T ss_pred             HHHhhc-------CCCCeeEEECcchHHHHHcCcc------cCCeEEEECCCCcEEEeecCC----CcHHHHHHHHHhh
Confidence            777765       66 8999999999999999986      569999999999999987532    3467777777765

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.88  E-value=4.8e-22  Score=183.60  Aligned_cols=125  Identities=15%  Similarity=0.147  Sum_probs=112.6

Q ss_pred             cccCCCCCCCCcE-----EeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         63 CFKLVSKPAPFWQ-----GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        63 ~~l~~G~~aPdF~-----L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      ..+.+|+++|+|+     |.   +.+|++++|++++||++||+|| ++||++|+.++|.|.+++++|+++++.||+|++|
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~---d~dG~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d  124 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLN---TPGNKPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTP  124 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEES---SGGGCCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cccCCCCcCCCccccccccC---CCCCCEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            4688999999999     76   6689999999999999999999 8999999999999999999999989999999975


Q ss_pred             ------CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        138 ------SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       138 ------~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                            +++..++|++.+       +++||++.|.+..+++.|++.      ..|++||||++|+|++.+.+.
T Consensus       125 ~~~~~d~~~~~~~~~~~~-------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~  184 (352)
T 2hyx_A          125 EYAFEKVPGNVAKGAANL-------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGE  184 (352)
T ss_dssp             SSGGGGCHHHHHHHHHHH-------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESB
T ss_pred             cccccCCHHHHHHHHHHc-------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCC
Confidence                  466777777765       889999999999999999986      579999999999999998543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.87  E-value=1.5e-21  Score=154.48  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=113.6

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhHHHHhh
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVN  147 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~~~~~~  147 (299)
                      .++|+|++.   +.+|+.+++++++||++||+|| ++||++|..+++.|.+++++++  ++.+++|+.|+ .+..++|.+
T Consensus         2 ~~~p~~~l~---~~~g~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~   75 (136)
T 1lu4_A            2 DERLQFTAT---TLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVS   75 (136)
T ss_dssp             GGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCeEee---cCCCCeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHH
Confidence            368999988   6689999999999999999999 9999999999999999999997  89999999987 777888888


Q ss_pred             cccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        148 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       148 ~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+       +++||++.|.+..+++.|++.      ..|+++|+|++|+|+ .+.. .....+.+++.+.++.+
T Consensus        76 ~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~-~~~~-~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           76 KY-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST-FVNN-PTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             HH-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEE-EECC-SSSCCCHHHHHHHHHHC
T ss_pred             Hc-------CCCceEEECCchhHHHhcCCC------CCCEEEEECCCCcEE-EEEc-CCCccCHHHHHHHHHHH
Confidence            76       789999999999999999986      569999999999999 6631 11223577888777765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.87  E-value=1.6e-21  Score=153.94  Aligned_cols=131  Identities=16%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhHHHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAW  145 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~~~~  145 (299)
                      +|.++|+|++.   +.+|+.+++++++||++||+|| ++||++|..+++.|.+++++++  ++.+++|+.|+ .+...+|
T Consensus         1 ~~~~~p~~~~~---~~~g~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~   74 (136)
T 1zzo_A            1 TVPAQLQFSAK---TLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEF   74 (136)
T ss_dssp             CCCGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHH
T ss_pred             CCCCCCCcccc---cCCCCEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHH
Confidence            47789999998   6689999999999999999999 9999999999999999999997  89999999875 6777788


Q ss_pred             hhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        146 VNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       146 ~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+.+       ++ +||++.|.+..+++.||+.      ..|+++|+|++|+|+ .+.+.    .+.+++.+.++.+
T Consensus        75 ~~~~-------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~~id~~g~i~-~~~g~----~~~~~l~~~l~~~  133 (136)
T 1zzo_A           75 VNKY-------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVD-VVRGR----MSQDELTRRVTAL  133 (136)
T ss_dssp             HHHT-------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEE-EEESC----CCHHHHHHHHHHH
T ss_pred             HHHc-------CCCceEEEEcCCcHHHHHcCCC------CCceEEEECCCCCEE-EEecC----CCHHHHHHHHHHH
Confidence            7765       77 9999999999999999986      569999999999999 65332    2467777777655

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.86  E-value=9.6e-22  Score=157.98  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             CCCCCCC-cEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCC-HHhHH
Q psy16151         67 VSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHL  143 (299)
Q Consensus        67 ~G~~aPd-F~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~-~~~~~  143 (299)
                      +|+.+|+ |++.   +.+|+.+++++++||++||+|| ++||++|+.++|.|.++++++++ .++.|++|++|. .+...
T Consensus         3 ~~~~~P~~f~l~---~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~   78 (144)
T 1i5g_A            3 LKKFFPYSTNVL---KGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK   78 (144)
T ss_dssp             TTTSCSSCSEEE---ETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred             hhhhCCCceEEE---cCCCCEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence            4789999 9998   5689999999999999999999 89999999999999999999985 689999999984 66677


Q ss_pred             HHhhcccccCCCCccceeeee-cCchHHHHHhCCcccCCCCceeEEEEEe-CCCcEEEEE
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLRGLFIID-RNGVLRQIT  201 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~~gv~~~~~g~~~p~~~lID-~dG~I~~~~  201 (299)
                      +|.+.+      .-..+|++. |.+..+++.|++.      ..|+++||| ++|+|++.+
T Consensus        79 ~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           79 DYYAKM------PWLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             HHHTTC------SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred             HHHHhC------CccccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence            777764      123566665 6668999999986      569999999 999999875

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.86  E-value=2.9e-21  Score=159.20  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=110.5

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CH
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SH  139 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~  139 (299)
                      ...+.+|+++|+|++++. +.+|+.++++++ +||++||+|| ++|||+|..++|.|.+++++    ++.|++|+.| +.
T Consensus        19 ~~~~~~G~~~P~f~l~~~-~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~   92 (168)
T 2b1k_A           19 LESALIGKPVPKFRLESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDR   92 (168)
T ss_dssp             CCCTTTTSBCCCCEEEES-SSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCH
T ss_pred             ccccccCCcCCCeEeecc-cCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCCh
Confidence            346789999999999843 238999999985 9999999999 99999999999999988764    8999999975 46


Q ss_pred             HhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      +...+|.+.+       +++|+ ++.|.+..+++.||+.      ..|++||||++|+|++.+.+..    +.+++.+.+
T Consensus        93 ~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l  155 (168)
T 2b1k_A           93 QKAISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL----NPRVWEEEI  155 (168)
T ss_dssp             HHHHHHHHHH-------CCCCSEEEEETTCHHHHHHTCC------SSSEEEEECTTSBEEEEEESCC----CHHHHHHTT
T ss_pred             HHHHHHHHHc-------CCCCceeeECcchHHHHHcCcc------ccCEEEEECCCCeEEEEEeCCC----CHHHHHHHH
Confidence            7778888776       78888 5788889999999996      4689999999999998875432    344444444


Q ss_pred             hh
Q psy16151        219 QA  220 (299)
Q Consensus       219 ~~  220 (299)
                      +.
T Consensus       156 ~~  157 (168)
T 2b1k_A          156 KP  157 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.85  E-value=1.6e-21  Score=158.22  Aligned_cols=134  Identities=13%  Similarity=0.199  Sum_probs=106.8

Q ss_pred             cccCCCCCCCCcEEeeeeCCCC--------ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQL--------KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G--------~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      ..+.+|+++|+|+++   +.+|        +.+++++++||++||+|| ++||++|..+++.|.+++++   .++.+++|
T Consensus         6 ~~~~~g~~~p~f~l~---~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v   78 (156)
T 1kng_A            6 PSALIGRPAPQTALP---PLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGI   78 (156)
T ss_dssp             ------CBCCCCCBC---CCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEE
T ss_pred             hhHHhCCCCCCceee---eccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEE
Confidence            357889999999998   5577        999999999999999999 89999999999999998765   46999999


Q ss_pred             eCC-CHHhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHH
Q psy16151        135 SVD-SHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVD  212 (299)
Q Consensus       135 s~d-~~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~  212 (299)
                      +.| +.+...+|.+.+       +++|| ++.|.+..+++.|++.      ..|++||||++|+|++.+.+..    ..+
T Consensus        79 ~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~g~~----~~~  141 (156)
T 1kng_A           79 NYKDAADNARRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPI----TPD  141 (156)
T ss_dssp             EESCCHHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCC----CHH
T ss_pred             ECCCCHHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCcC------ccCeEEEEcCCCCEEEEEeCCC----CHH
Confidence            975 467778888776       78899 8889999999999986      4689999999999999874432    344


Q ss_pred             HHHHHHhh
Q psy16151        213 ETLRLVQA  220 (299)
Q Consensus       213 evl~~l~~  220 (299)
                      ++.+.++.
T Consensus       142 ~l~~~l~~  149 (156)
T 1kng_A          142 NLRSVLLP  149 (156)
T ss_dssp             HHHHTHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.84  E-value=4.2e-21  Score=154.71  Aligned_cols=120  Identities=19%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             CCCCCCCC-cEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCC-HHhH
Q psy16151         66 LVSKPAPF-WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTH  142 (299)
Q Consensus        66 ~~G~~aPd-F~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~-~~~~  142 (299)
                      ..|+.+|+ |++.   +.+| .+++++++||++||+|| ++||++|+.++|.|.++++++++ .++.|++|++|. .+..
T Consensus         3 ~~~~~~P~~f~l~---~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~   77 (146)
T 1o8x_A            3 GLDKYLPGIEKLR---RGDG-EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGF   77 (146)
T ss_dssp             CGGGTSTTCCEEE---ETTE-EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred             chHhhCCCceEEE---cCCC-CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHH
Confidence            35789999 9998   5689 99999999999999999 89999999999999999999984 689999999985 6667


Q ss_pred             HHHhhcccccCCCCccceeeee-cCchHHHHHhCCcccCCCCceeEEEEEe-CCCcEEEEEe
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLRGLFIID-RNGVLRQITM  202 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~~gv~~~~~g~~~p~~~lID-~dG~I~~~~~  202 (299)
                      ++|.+.+      ....+|+.. |.+..+++.|++.      ..|+++||| ++|+|++.+.
T Consensus        78 ~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A           78 AGYFAKM------PWLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             HHHHTTC------SSEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHC------CceeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEecc
Confidence            7777664      124566665 6668999999986      569999999 9999998763

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.83  E-value=7.9e-21  Score=155.50  Aligned_cols=133  Identities=11%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC------HH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------HF  140 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~------~~  140 (299)
                      +|+.+|  ++.   +.+|+.+++++++||++||+|| ++||++|+.++|.|.+++++|+..++.||+|+.|+      .+
T Consensus        16 ~~~~~p--~l~---~~~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~   89 (164)
T 2h30_A           16 VPHTMS--TMK---TADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDG   89 (164)
T ss_dssp             HHHHHT--TCE---ETTSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTT
T ss_pred             cCCcCC--ccC---CCCCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHH
Confidence            455556  444   6689999999999999999999 99999999999999999999998999999999753      44


Q ss_pred             hHHHHhhcccccCCCCccc-eeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        141 THLAWVNTPRKEGGLGKLK-IPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      ...+|.+..       ++. |++..|.+.++++.|++.      ..|++||||++|++++.+.+.    .+.+++.+.++
T Consensus        90 ~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~i~  152 (164)
T 2h30_A           90 EFQKWYAGL-------NYPKLPVVTDNGGTIAQNLNIS------VYPSWALIGKDGDVQRIVKGS----INEAQALALIR  152 (164)
T ss_dssp             HHHHHHTTS-------CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESC----CCHHHHHHHHH
T ss_pred             HHHHHHHhC-------CCCcceEEEcCchHHHHHcCCC------ccceEEEECCCCcEEEEEcCC----CCHHHHHHHHH
Confidence            455665543       566 899999999999999986      569999999999999987432    25677777777


Q ss_pred             hcc
Q psy16151        220 AFH  222 (299)
Q Consensus       220 ~L~  222 (299)
                      .+.
T Consensus       153 ~~~  155 (164)
T 2h30_A          153 NPN  155 (164)
T ss_dssp             CTT
T ss_pred             HHH
Confidence            664

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.83  E-value=2.5e-21  Score=160.09  Aligned_cols=121  Identities=18%  Similarity=0.178  Sum_probs=101.2

Q ss_pred             ccCCCCCCCCc-EEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCH-H
Q psy16151         64 FKLVSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSH-F  140 (299)
Q Consensus        64 ~l~~G~~aPdF-~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~-~  140 (299)
                      +..+|+++|+| ++.   +.+| .++|++++||++||+|| ++||++|+.++|.|.+++++|++ .++.|++|++|+. +
T Consensus        21 ~~~vG~~~P~f~~l~---~~~g-~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~   95 (165)
T 3s9f_A           21 MSGVAKHLGEALKLR---KQAD-TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEED   95 (165)
T ss_dssp             -CHHHHHHHHTSCEE---ETTE-EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHH
T ss_pred             hhhhcccCCcceeee---cCCC-cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHH
Confidence            45689999999 887   6688 99999999999999999 99999999999999999999986 6899999999864 5


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCc-hHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEE
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQIT  201 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~-~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~  201 (299)
                      ..++|.+..      .-..+|+..+.. ..+++.|++.      ..|++||||++ |+|++..
T Consensus        96 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A           96 DFNAYYAKM------PWLSIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             HHHHHHTTC------SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHhC------CCcccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence            566666654      123556555443 7999999996      57999999998 9999875

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.83  E-value=9.1e-21  Score=151.96  Aligned_cols=119  Identities=19%  Similarity=0.222  Sum_probs=99.8

Q ss_pred             CCCCCCCCc-EEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCC-HHhH
Q psy16151         66 LVSKPAPFW-QGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTH  142 (299)
Q Consensus        66 ~~G~~aPdF-~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~-~~~~  142 (299)
                      .+|+.+|+| ++.   +.+| .+++++++||++||+|| ++||++|+.++|.|.+++++++ +.++.|++|++|. .+..
T Consensus         3 ~~g~~~p~~~~l~---~~~g-~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~   77 (144)
T 1o73_A            3 GLAKYLPGATNLL---SKSG-EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDF   77 (144)
T ss_dssp             GGGGTSCTTCCBB---CTTS-CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHH
T ss_pred             chhhhCccceEee---cCCC-cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHH
Confidence            468999997 987   6799 99999999999999999 8999999999999999999998 4689999999986 4556


Q ss_pred             HHHhhcccccCCCCccceeeee-cCchHHHHHhCCcccCCCCceeEEEEEe-CCCcEEEEE
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLS-DLTHKISLDYGVYLSDQGHTLRGLFIID-RNGVLRQIT  201 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~-D~~~~~~~~~gv~~~~~g~~~p~~~lID-~dG~I~~~~  201 (299)
                      .+|.+.+      ....+|+.. |....+++.|++.      ..|+++||| ++|+|++..
T Consensus        78 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A           78 HDYYGKM------PWLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHTTC------SSEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred             HHHHHhC------CceEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecc
Confidence            6666654      123455554 5568899999986      569999999 899999875

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.68  E-value=3.9e-21  Score=153.66  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=96.7

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCc-cCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCC-HHhHH
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSD-YYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDS-HFTHL  143 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~-~~~~~  143 (299)
                      +.+|+|+|+   +.+|+.+++++ ++|| ++||+|| ++|||+|+.++|.|.++++++++  .++.+++|++|+ ++...
T Consensus         2 ~~~p~~~l~---~~~g~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~   77 (143)
T 2lus_A            2 EFIQGIKLV---KKNRCEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF   77 (143)
Confidence            457999998   56899999999 9999 9999999 89999999999999999999953  589999999985 45556


Q ss_pred             HHhhcccccCCCCccce---eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        144 AWVNTPRKEGGLGKLKI---PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~---p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      +|.+.+       +++|   ++..|....+++.|++.      ..|+++|||++|+|++.+
T Consensus        78 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  125 (143)
T 2lus_A           78 QYMMES-------HGDWLAIPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMN  125 (143)
Confidence            666554       4554   44456667899999986      569999999999999886

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.67  E-value=5.8e-16  Score=130.15  Aligned_cols=139  Identities=19%  Similarity=0.301  Sum_probs=109.3

Q ss_pred             ccccCCCCCCCC--cEEeeee----C------CCCceEEcCcc--CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHH-h
Q psy16151         62 ICFKLVSKPAPF--WQGTAVV----D------GQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-H  125 (299)
Q Consensus        62 ~~~l~~G~~aPd--F~L~~~~----~------~~G~~v~Lsd~--~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~-~  125 (299)
                      .+...+|+++|.  +++.-+-    +      +.-++++++++  +||.|||+++|++++|.|.. ++|.+.+.++++ +
T Consensus        23 ~~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k  102 (199)
T 4h86_A           23 SMSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVK  102 (199)
T ss_dssp             CBCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHH
T ss_pred             hhHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHH
Confidence            445778999994  5543321    1      12356888876  79999999999999999986 699999998876 7


Q ss_pred             hcCc-EEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC---CceeEEEEEeCCCcEEEEE
Q psy16151        126 QINT-EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG---HTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       126 ~~gv-~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g---~~~p~~~lID~dG~I~~~~  201 (299)
                      ++|+ +|++||+||+..+.+|.+.....   ....+++++|++++++++||+.....+   .+.|.++||| ||+|.+.+
T Consensus       103 ~kGvd~I~ciSVND~FVm~AW~k~~~~~---~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~  178 (199)
T 4h86_A          103 EKEVDQVIVVTVDNPFANQAWAKSLGVK---DTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAA  178 (199)
T ss_dssp             HSCCCEEEEEESSCHHHHHHHHHHTTCC---CCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEE
T ss_pred             hcCCcEEEEEEcCCHHHHHHHHHHhccc---ccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEE
Confidence            7888 69999999999999999876221   135689999999999999998655422   2457899998 99999998


Q ss_pred             ecc
Q psy16151        202 MND  204 (299)
Q Consensus       202 ~~~  204 (299)
                      ..+
T Consensus       179 vE~  181 (199)
T 4h86_A          179 KET  181 (199)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            754

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.49  E-value=1.6e-14  Score=117.60  Aligned_cols=126  Identities=12%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+...++|  .   + .++.+++++++||++||+||.++||++|..+.|.+   .++.+.+. .++.++.|+.+...
T Consensus        23 l~~~~~~~~~~--~---~-~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~   95 (154)
T 2ju5_A           23 TRPIAAANLQW--E---S-YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN   95 (154)
T ss_dssp             CCSSCCCCCCE--E---C-HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC
T ss_pred             hhhcccCCCCC--C---C-HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc
Confidence            34556667777  2   2 45788899999999999999789999999999999   67755443 46888888876532


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                                      +++++ +.|.+.++++.|++.      ..|+++|+|++|+++... +..  ....+++.+.++.
T Consensus        96 ----------------~~~~~-~~~~~~~l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~  149 (154)
T 2ju5_A           96 ----------------HQPEE-QRQKNQELKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKS  149 (154)
T ss_dssp             ----------------CCCHH-HHHHHHHHHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHH
T ss_pred             ----------------CCChh-hHhhHHHHHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHH
Confidence                            12343 356678999999996      479999999999999887 432  3367777777776


Q ss_pred             cc
Q psy16151        221 FH  222 (299)
Q Consensus       221 L~  222 (299)
                      +.
T Consensus       150 ~l  151 (154)
T 2ju5_A          150 AL  151 (154)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.48  E-value=1.9e-13  Score=106.88  Aligned_cols=116  Identities=9%  Similarity=-0.006  Sum_probs=87.0

Q ss_pred             CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151         70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP  149 (299)
Q Consensus        70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~  149 (299)
                      .+++++..   +.+|........+||++||+|| ++||++|....|.+.+++++++ .++.++.|+.|            
T Consensus         5 ~~~~l~~~---~~~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------   67 (126)
T 2l57_A            5 GIKQINFQ---SINVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------   67 (126)
T ss_dssp             CSSCTTTT---CCSEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT------------
T ss_pred             ccCCCCcc---ccchhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC------------
Confidence            45555544   3344444456668899999999 9999999999999999999987 57999999865            


Q ss_pred             cccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCC
Q psy16151        150 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLR  226 (299)
Q Consensus       150 ~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~  226 (299)
                                    .|.+.++++.|++.      ..|+++++|++|+++..+.+    ....+++.+.++.+..+..
T Consensus        68 --------------~d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G----~~~~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A           68 --------------EEKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQG----LMRKNNIETILNSLGVKEG  120 (126)
T ss_dssp             --------------SSHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEES----CCCHHHHHHHHHHHCCCCC
T ss_pred             --------------CCchHHHHHHcCCc------ceeEEEEECCCCCEEEEecC----CCCHHHHHHHHHHHhcccc
Confidence                          12345678889985      56999999999999987643    2356778888877654433

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.42  E-value=4e-14  Score=112.39  Aligned_cols=118  Identities=11%  Similarity=0.055  Sum_probs=86.0

Q ss_pred             cCCCCCCCCcE-EeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         65 KLVSKPAPFWQ-GTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        65 l~~G~~aPdF~-L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ...|..+|+|. +.   +.++....+++++||++||+|| ++||++|....+.+   .++.++++  ++.++.|+.+...
T Consensus         4 ~~~~~~~~~f~~~~---~~~~~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~   77 (134)
T 2fwh_A            4 TAQTQTHLNFTQIK---TVDELNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND   77 (134)
T ss_dssp             ------CCCCEECC---SHHHHHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC
T ss_pred             ccccccCCCcEEec---CHHHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc
Confidence            45688899998 43   4455567788888999999999 99999999999988   88888876  5899999876421


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEE--EEEeccCCCCCCHHHHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLR--QITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~--~~~~~~~~~g~~~~evl~~l  218 (299)
                                              |...++++.|++.      ..|+++++|++|+++  .+..+    ....+++.+.+
T Consensus        78 ------------------------~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G----~~~~~~l~~~l  123 (134)
T 2fwh_A           78 ------------------------AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTG----FMDAETFSAHL  123 (134)
T ss_dssp             ------------------------HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCS----CCCHHHHHHHH
T ss_pred             ------------------------chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeee----ccCHHHHHHHH
Confidence                                    2346788889986      569999999999997  44322    23567888888


Q ss_pred             hhcc
Q psy16151        219 QAFH  222 (299)
Q Consensus       219 ~~L~  222 (299)
                      +.++
T Consensus       124 ~~~~  127 (134)
T 2fwh_A          124 RDRQ  127 (134)
T ss_dssp             HHC-
T ss_pred             HhcC
Confidence            7664

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.32  E-value=2e-11  Score=96.96  Aligned_cols=100  Identities=14%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce
Q psy16151         81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  160 (299)
Q Consensus        81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                      +.+|....|++++||++||+|| ++||++|....|.+.++++++.+ ++.++.|..|.                      
T Consensus        38 ~~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------   93 (141)
T 3hxs_A           38 DYENHSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK----------------------   93 (141)
T ss_dssp             CCSSCCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------
T ss_pred             ccccchhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC----------------------
Confidence            5678889999999999999999 99999999999999999999875 58888777643                      


Q ss_pred             eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        161 PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       161 p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                            +.++++.|++.      ..|+++++|++|+++ .+.+    ..+.+++.+.++.+
T Consensus        94 ------~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G----~~~~~~l~~~l~~~  137 (141)
T 3hxs_A           94 ------EPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMG----ALSKEQLKGYIDKV  137 (141)
T ss_dssp             ------CHHHHHHTTCC------SSSEEEEECSSSCCE-EEES----CCCHHHHHHHHHHT
T ss_pred             ------CHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeC----CCCHHHHHHHHHHH
Confidence                  23577888886      569999999999987 3322    23567777777655

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.30  E-value=1.4e-11  Score=96.59  Aligned_cols=109  Identities=12%  Similarity=0.235  Sum_probs=79.7

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      +....++|+|+.     .+++.++....+||++||+|| ++||++|+...|.+.++++++++ ++.++.|+.|.      
T Consensus        18 ~~~~~~~~~~~~-----~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~------   84 (128)
T 3ul3_B           18 LRMFKKVPRLQQ-----NGSNIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK------   84 (128)
T ss_dssp             --------CCCC-----CCCSSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG------
T ss_pred             HHHhccCCcccc-----CCccHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC------
Confidence            344567888873     366778888889999999999 99999999999999999999974 67888776532      


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                                            +.++++.|++.      ..|+++++ ++|+++..+.+    ....+++.+.++
T Consensus        85 ----------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G----~~~~~~l~~~l~  126 (128)
T 3ul3_B           85 ----------------------NESLARKFSVK------SLPTIILL-KNKTMLARKDH----FVSSNDLIALIK  126 (128)
T ss_dssp             ----------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESS----CCCHHHHHHHHT
T ss_pred             ----------------------CHHHHHHcCCC------CcCEEEEE-ECCEEEEEecC----CCCHHHHHHHHH
Confidence                                  23678889986      56899999 79999887633    235667776665

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.27  E-value=1.7e-11  Score=96.56  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHH--HHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN--DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~--~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  164 (299)
                      +..+...||++||+|| ++||++|....|.|.  ++.+++++ ++.++.|++++                         .
T Consensus        22 ~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~   74 (133)
T 3fk8_A           22 LAAGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------F   74 (133)
T ss_dssp             HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------T
T ss_pred             HHHHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------c
Confidence            3344456999999999 999999999999999  99988865 68999998853                         1


Q ss_pred             cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC---CCCHHHHHHHHhhc
Q psy16151        165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV---GRSVDETLRLVQAF  221 (299)
Q Consensus       165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~---g~~~~evl~~l~~L  221 (299)
                      |...++++.|++...   ...|+++++|++|+++....++.-.   ....+++.+.++.+
T Consensus        75 ~~~~~l~~~~~v~~~---~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQ---DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             TSSHHHHHHTTCGGG---GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             cchHHHHHHhCCccC---CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence            335668888888210   1579999999999999987542211   23456666666654

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.25  E-value=6.4e-13  Score=109.62  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=75.1

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  162 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  162 (299)
                      .+.++..+||+|||+|| ++||++|+...+.+   .++.+.+++ ++.++.|+.|............ ..  .....+..
T Consensus        39 ~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~-~~--~~~~~~~~  113 (172)
T 3f9u_A           39 GMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIM-EN--GTERTLRT  113 (172)
T ss_dssp             HHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEE-ET--TEEEEEEE
T ss_pred             HHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhh-hc--chhhhhhh
Confidence            34555567999999999 99999999853333   555555554 7999999988643221111110 00  00122333


Q ss_pred             eecCchHH-HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        163 LSDLTHKI-SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       163 l~D~~~~~-~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +.|....+ ++.|++.      ..|+++|+|++|+++....+..   .+.+++.+.++.
T Consensus       114 ~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~---~~~~~l~~~l~~  163 (172)
T 3f9u_A          114 VGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYD---EDISKYINFLQT  163 (172)
T ss_dssp             HHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSC---CCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCC---CCHHHHHHHHHH
Confidence            44433444 5889986      5799999999999998764222   225666655543

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=3.7e-11  Score=94.00  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=74.0

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcccee
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP  161 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p  161 (299)
                      +.+.+++.+||++||+|| ++||++|....|.+   .++.+.++ .++.++.|..+.                       
T Consensus        18 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~-----------------------   72 (130)
T 2kuc_A           18 EALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK-----------------------   72 (130)
T ss_dssp             HHHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS-----------------------
T ss_pred             HHHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC-----------------------
Confidence            456666778999999999 99999999999988   55554443 345666665543                       


Q ss_pred             eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        162 LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       162 ~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                         |....+++.|++.      ..|+++++|++|+++....+.    ...+++.+.++.+..
T Consensus        73 ---~~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~----~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           73 ---GEGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGA----EDAPELLKKVKLGVE  121 (130)
T ss_dssp             ---TTHHHHHHHTTCC------SSCEEEEECTTSCEEEEEESC----CCHHHHHHHHHHHHS
T ss_pred             ---cchHHHHHHcCCC------CCCEEEEECCCCcEEEEecCC----CCHHHHHHHHHHHHH
Confidence               2346788889986      569999999999999876432    246677777776643

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.18  E-value=1.4e-10  Score=88.16  Aligned_cols=90  Identities=12%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .+.+||+++|+|| ++||++|....|.|.+++++++  ++.++.|..++                           .+.+
T Consensus        20 ~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~   69 (111)
T 2pu9_C           20 KAAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT   69 (111)
T ss_dssp             TTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred             HhcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHH
Confidence            3446899999999 8999999999999999999886  58888887762                           1346


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++.|++.      ..|+ ++++++|+++..+.+.     ..+++.+.++.+
T Consensus        70 ~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (111)
T 2pu9_C           70 LAKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA  109 (111)
T ss_dssp             HHHHHCCS------BSSE-EEEESSSSEEEEEESS-----CHHHHHHHHHHH
T ss_pred             HHHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            78889986      4677 7788999998876332     256676666654

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.15  E-value=5.1e-10  Score=85.38  Aligned_cols=90  Identities=13%  Similarity=0.206  Sum_probs=72.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| ++||++|....|.+.++++++++ ++.++.|+.|.                            +.++++
T Consensus        16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   65 (112)
T 2voc_A           16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETAG   65 (112)
T ss_dssp             SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence            7889999999 89999999999999999999975 68899888753                            124778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.+..+..
T Consensus        66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           66 KYGVM------SIPTLLVL-KDGEVVETSVGF----KPKEALQELVNKHLL  105 (112)
T ss_dssp             HTTCC------SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTTSC
T ss_pred             HcCCC------cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHHH
Confidence            88886      56899999 899998876432    356778888776644

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.10  E-value=2.3e-10  Score=88.14  Aligned_cols=89  Identities=11%  Similarity=0.087  Sum_probs=69.2

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      +++.++|++||+|| ++||++|....|.+.++++++++  +.++.|..|.                            +.
T Consensus        26 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~----------------------------~~   74 (116)
T 3qfa_C           26 LDAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQ   74 (116)
T ss_dssp             HHHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT----------------------------TH
T ss_pred             HHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CH
Confidence            34457899999999 99999999999999999988864  8888887653                            24


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++++.|++.      ..|+++++ ++|+++..+.+.     +.+++.+.++.
T Consensus        75 ~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~  114 (116)
T 3qfa_C           75 DVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE  114 (116)
T ss_dssp             HHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHH
T ss_pred             HHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHH
Confidence            677888886      46887777 899998876322     56677766654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9.2e-10  Score=83.60  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +||+++|+|| ++||++|....|.+.++.++++..++.++.|+.|.                            +.++++
T Consensus        20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~   70 (112)
T 3d6i_A           20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE----------------------------NSEISE   70 (112)
T ss_dssp             TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------CHHHHH
Confidence            4789999999 99999999999999999998766678898888763                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.     ...++.+.++.+
T Consensus        71 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  107 (112)
T 3d6i_A           71 LFEIS------AVPYFIII-HKGTILKELSGA-----DPKEYVSLLEDC  107 (112)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEECSC-----CHHHHHHHHHHH
T ss_pred             HcCCC------cccEEEEE-ECCEEEEEecCC-----CHHHHHHHHHHH
Confidence            88885      46887777 799999876332     334555555543

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.09  E-value=4.2e-10  Score=87.24  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      +.+||+++|+|| ++||++|....|.+.+++++++  ++.++.|..++                           .+.++
T Consensus        34 ~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~~   83 (124)
T 1faa_A           34 AAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTL   83 (124)
T ss_dssp             HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHH
T ss_pred             hcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHHH
Confidence            447899999999 9999999999999999999886  58888887652                           13467


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++.|++.      ..|+ ++++++|+++..+.+.     ..+++.+.++.+
T Consensus        84 ~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~i~~~  122 (124)
T 1faa_A           84 AKELGIR------VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA  122 (124)
T ss_dssp             HHHHCCS------SSSE-EEEEETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             HHHcCCC------eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            7889986      4577 6667899998876432     356777777654

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.08  E-value=8.8e-10  Score=87.18  Aligned_cols=90  Identities=11%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| ++||++|....|.|.++++++++ ++.++.|..|.                            +.++++
T Consensus        37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   86 (136)
T 2l5l_A           37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELAG   86 (136)
T ss_dssp             CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHHH
Confidence            4678999999 99999999999999999999875 58888887652                            236777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+++++|++|+++ .+.+    ..+.+++.+.++.+..
T Consensus        87 ~~~v~------~~Pt~~~~~~~G~~~-~~~G----~~~~~~l~~~l~~~~~  126 (136)
T 2l5l_A           87 AFGIR------SIPSILFIPMEGKPE-MAQG----AMPKASFKKAIDEFLL  126 (136)
T ss_dssp             HTTCC------SSCEEEEECSSSCCE-EEES----CCCHHHHHHHHHHHHT
T ss_pred             HcCCC------CCCEEEEECCCCcEE-EEeC----CCCHHHHHHHHHHHhh
Confidence            88885      569999999999987 3322    2356777777776644

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.07  E-value=5.5e-10  Score=84.89  Aligned_cols=89  Identities=18%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      +++..+|+|||+|| ++||++|....|.+.++.+++.  ++.++.|.+|                            ...
T Consensus        15 l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~   63 (105)
T 3zzx_A           15 LNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVD----------------------------ECE   63 (105)
T ss_dssp             HHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCH
T ss_pred             HHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEecc----------------------------cCH
Confidence            34456789999999 9999999999999999988875  4556655543                            234


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++++.|+|.      ..|+.+++ ++|+++.+..+     .+.+++.+.++.
T Consensus        64 ~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k  103 (105)
T 3zzx_A           64 DIAQDNQIA------CMPTFLFM-KNGQKLDSLSG-----ANYDKLLELVEK  103 (105)
T ss_dssp             HHHHHTTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred             HHHHHcCCC------eecEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHh
Confidence            688899986      56876666 79999988743     356777777764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.06  E-value=1.1e-10  Score=96.33  Aligned_cols=80  Identities=11%  Similarity=0.007  Sum_probs=60.8

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      .+++++||++||+|| ++|||+|+.++|.|.++++++.  ++.++.|++|..   .+..+.+       ..         
T Consensus        48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~---~~~~~~~-------~~---------  105 (167)
T 1z6n_A           48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQR-------LA---------  105 (167)
T ss_dssp             HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH---HHHTTTT-------TT---------
T ss_pred             HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC---HHHHHHH-------HH---------
Confidence            467789999999999 9999999999999999998874  688888876632   2233322       10         


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                            .++.      ..|+++++|++|+++.++
T Consensus       106 ------~~v~------~iPt~i~~~~~G~~~~~~  127 (167)
T 1z6n_A          106 ------LERI------AIPLVLVLDEEFNLLGRF  127 (167)
T ss_dssp             ------CSSC------CSSEEEEECTTCCEEEEE
T ss_pred             ------cCCC------CcCeEEEECCCCCEEEEE
Confidence                  0232      579999999999998776

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.05  E-value=1e-09  Score=83.40  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +||++||+|| ++||++|....|.+.++.++++  ++.++.|..|.                            +.++++
T Consensus        23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~l~~   71 (109)
T 3f3q_A           23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE----------------------------LGDVAQ   71 (109)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence            5889999999 9999999999999999999885  47787776542                            346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|++++++ +|+++....+.     ..+++.+.++.+
T Consensus        72 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~  108 (109)
T 3f3q_A           72 KNEVS------AMPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN  108 (109)
T ss_dssp             HTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             HcCCC------ccCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence            88886      568998997 99998887432     346666666543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.05  E-value=9.5e-10  Score=85.74  Aligned_cols=87  Identities=13%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      .+||++||+|| ++||++|....|.|.++.+++.  ++.++.|+.|.                            +.+++
T Consensus        36 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~   84 (124)
T 1xfl_A           36 ESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVA   84 (124)
T ss_dssp             HTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHH
T ss_pred             hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence            46899999999 8999999999999999999886  68888887642                            34677


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.|++.      ..|+++++ ++|+++....+     .+.+++.+.++.+
T Consensus        85 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~  122 (124)
T 1xfl_A           85 SDWAIQ------AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAKH  122 (124)
T ss_dssp             HHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred             HHcCCC------ccCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHh
Confidence            888886      45776655 89999987633     2466777776654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.05  E-value=3.3e-10  Score=89.56  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      .+++.+||++||+|| ++||++|....|.|.++.+++   ++.++.|..|.                            +
T Consensus        34 ~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~----------------------------~   81 (133)
T 3cxg_A           34 VFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI----------------------------H   81 (133)
T ss_dssp             HHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT----------------------------C
T ss_pred             HHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc----------------------------h
Confidence            456678899999999 999999999999998876655   46666665432                            3


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEE-eCCCc--EEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFII-DRNGV--LRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lI-D~dG~--I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .++++.|++.      ..|+++++ |++|+  ++....+.     ..+++.+.++.+
T Consensus        82 ~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~  127 (133)
T 3cxg_A           82 PKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKY  127 (133)
T ss_dssp             HHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             HHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHH
Confidence            4678889986      56899888 66777  77766332     466777777665

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.05  E-value=9e-10  Score=88.26  Aligned_cols=112  Identities=9%  Similarity=0.050  Sum_probs=80.6

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW  145 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~  145 (299)
                      ..|.++|++.+..+   +++.+...-..+|++||+|| +.||++|....|.+.++++++.+ ++.++.|+.|.       
T Consensus        30 ~~~~~~~~~~v~~l---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~-------   97 (148)
T 3p2a_A           30 RCGHSLFDGEVINA---TAETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEA-------   97 (148)
T ss_dssp             TTCCBTTCCCCEEC---CTTTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------
T ss_pred             hcCCccccCCceec---CHHHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcC-------
Confidence            34666777666533   44444433357889999999 99999999999999999999875 58888887652       


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                                           +.++++.|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        98 ---------------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  141 (148)
T 3p2a_A           98 ---------------------EPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGA----VPKAPFDNWLDEQ  141 (148)
T ss_dssp             ---------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHHHH
T ss_pred             ---------------------CHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHHH
Confidence                                 23677788886      46888777 699998876332    3456666666554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.03  E-value=2.7e-10  Score=90.24  Aligned_cols=93  Identities=13%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      .+..++.+||++||+|| ++||++|....|.+.++.+++.  ++.++.|+.|.                           
T Consensus        38 ~~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~---------------------------   87 (139)
T 3d22_A           38 KLSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE---------------------------   87 (139)
T ss_dssp             HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT---------------------------
T ss_pred             HHHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc---------------------------
Confidence            34445567999999999 8999999999999999999884  68898888753                           


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       +.++++.|++.      ..|+++++ ++|+++..+.+.     ..+++.+.+..+
T Consensus        88 -~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  130 (139)
T 3d22_A           88 -LSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-----NKPELHKKITAI  130 (139)
T ss_dssp             -SHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             -cHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-----CHHHHHHHHHHH
Confidence             24577888886      56887777 899999887432     345666655544

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.02  E-value=1.7e-09  Score=80.93  Aligned_cols=88  Identities=10%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .||+++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~   65 (105)
T 1nsw_A           16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS   65 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHH
Confidence            5689999999 99999999999999999998875 48888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  103 (105)
T 1nsw_A           66 QFGIM------SIPTLILF-KGGRPVKQLIGY----QPKEQLEAQLADV  103 (105)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTTT
T ss_pred             HcCCc------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Confidence            88885      46899999 899998876432    2456666666543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.02  E-value=2.8e-09  Score=79.67  Aligned_cols=87  Identities=9%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ++++++|+|| ++||++|....|.+.++.+++++ .+.++.|+.|.                            +.++++
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   67 (106)
T 3die_A           18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEG-KADILKLDVDE----------------------------NPSTAA   67 (106)
T ss_dssp             CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEECCc----------------------------CHHHHH
Confidence            7889999999 99999999999999999999985 38888887643                            235677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+.++++ +|+++....+.    ...+++.+.++.
T Consensus        68 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~  104 (106)
T 3die_A           68 KYEVM------SIPTLIVFK-DGQPVDKVVGF----QPKENLAEVLDK  104 (106)
T ss_dssp             HTTCC------SBSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHT
T ss_pred             hCCCc------ccCEEEEEe-CCeEEEEEeCC----CCHHHHHHHHHH
Confidence            88885      468888885 99998876332    355677776654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.01  E-value=3.9e-09  Score=80.10  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| +.|||+|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~   73 (115)
T 1thx_A           24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------NPTTVK   73 (115)
T ss_dssp             CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------CHHHHH
T ss_pred             CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999999875 48888888753                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    .+.+++.+.++.+
T Consensus        74 ~~~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~  111 (115)
T 1thx_A           74 KYKVE------GVPALRLV-KGEQILDSTEGV----ISKDKLLSFLDTH  111 (115)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HcCCC------ceeEEEEE-cCCEEEEEecCC----CCHHHHHHHHHHH
Confidence            88885      46899999 899999876432    2456777766654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.00  E-value=2.3e-09  Score=81.23  Aligned_cols=88  Identities=16%  Similarity=0.300  Sum_probs=66.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .||+++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   71 (112)
T 1t00_A           22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAA   71 (112)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999999875 48888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        72 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  109 (112)
T 1t00_A           72 KYGVM------SIPTLNVY-QGGEVAKTIVGA----KPKAAIVRDLEDF  109 (112)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTHHH
T ss_pred             hCCCC------cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence            88885      45776665 899998876432    2456666666543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.00  E-value=3.5e-09  Score=79.45  Aligned_cols=88  Identities=10%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   67 (107)
T 1dby_A           18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998875 48888887653                            236777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .||+.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        68 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  105 (107)
T 1dby_A           68 EYGIR------SIPTIMVF-KGGKKCETIIGA----VPKATIVQTVEKY  105 (107)
T ss_dssp             HHTCC------SSCEEEEE-SSSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HCCCC------cCCEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence            88885      45886666 899998876432    2455666666544

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.99  E-value=2.7e-09  Score=82.28  Aligned_cols=88  Identities=11%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .||++||+|| +.||+.|....|.|.++.+++.+ ++.++.|+.|.                            +.++++
T Consensus        30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~   79 (119)
T 1w4v_A           30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI   79 (119)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998875 58888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    .+.+++.+.++.+
T Consensus        80 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  117 (119)
T 1w4v_A           80 EYEVS------AVPTVLAM-KNGDVVDKFVGI----KDEDQLEAFLKKL  117 (119)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HcCCC------cccEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence            88886      46898888 899998876432    2456666666543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.99  E-value=1.1e-09  Score=86.63  Aligned_cols=91  Identities=13%  Similarity=0.179  Sum_probs=67.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .+|++||+|| +.||++|....|.|.++++++++.+  +.++.|..+.                            +..+
T Consensus        33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~   83 (140)
T 2dj1_A           33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS----------------------------ASML   83 (140)
T ss_dssp             TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT----------------------------CHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc----------------------------cHHH
Confidence            5789999998 9999999999999999999998764  5555554321                            2568


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      ++.|++.      ..|+++++ ++|+ +..+.    .....+++.+.++.+..+
T Consensus        84 ~~~~~v~------~~Pt~~~~-~~G~-~~~~~----g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           84 ASKFDVS------GYPTIKIL-KKGQ-AVDYD----GSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             HHHTTCC------SSSEEEEE-ETTE-EEECC----SCCCHHHHHHHHHHHHSS
T ss_pred             HHHCCCC------ccCeEEEE-ECCc-EEEcC----CCCCHHHHHHHHHHhcCC
Confidence            8889986      46899999 7898 43331    234567777777766543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.99  E-value=2.5e-09  Score=81.02  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +|++||+|| ++||++|....|.|.++.+++++ ++.++.|+.|.                            +.++++.
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~   73 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAEA   73 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHHH
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHHH
Confidence            889999999 89999999999999999999875 78888887753                            3467778


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |++.      ..|+.++ .++|+++..+.+.     +.+++.+.++.+
T Consensus        74 ~~v~------~~Pt~~~-~~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (112)
T 1ep7_A           74 AGIT------AMPTFHV-YKDGVKADDLVGA-----SQDKLKALVAKH  109 (112)
T ss_dssp             HTCC------BSSEEEE-EETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             cCCC------cccEEEE-EECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence            8885      4577555 4899998876332     456676666654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.98  E-value=2e-09  Score=83.28  Aligned_cols=88  Identities=13%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| ++||+.|....|.|.++.++++++++.++.|+.|.                            +.++++
T Consensus        32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~----------------------------~~~~~~   82 (121)
T 2j23_A           32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE----------------------------QSQIAQ   82 (121)
T ss_dssp             SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------CHHHHH
Confidence            5789999999 99999999999999999999887678888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++....+.     ..+++.+.++.+
T Consensus        83 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  119 (121)
T 2j23_A           83 EVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH  119 (121)
T ss_dssp             HHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             HcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence            88885      46887777 699998876332     466777776654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.98  E-value=5.2e-09  Score=84.50  Aligned_cols=88  Identities=14%  Similarity=0.177  Sum_probs=70.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ++|++||+|| +.||++|....|.+.++.+++.  ++.++.|..|.                            +..+++
T Consensus        31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~l~~   79 (153)
T 2wz9_A           31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG----------------------------VPEVSE   79 (153)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC----------------------------CHHHHH
Confidence            5899999999 9999999999999999998873  68888887653                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|++++++ +|+++....+     ...+++.+.++.+..
T Consensus        80 ~~~v~------~~Pt~~~~~-~G~~~~~~~G-----~~~~~l~~~i~~~l~  118 (153)
T 2wz9_A           80 KYEIS------SVPTFLFFK-NSQKIDRLDG-----AHAPELTKKVQRHAS  118 (153)
T ss_dssp             HTTCC------SSSEEEEEE-TTEEEEEEES-----SCHHHHHHHHHHHSC
T ss_pred             HcCCC------CCCEEEEEE-CCEEEEEEeC-----CCHHHHHHHHHHHhc
Confidence            88886      569999999 9999887633     245677777777654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.97  E-value=4.4e-09  Score=78.70  Aligned_cols=88  Identities=15%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| +.||++|....|.+.++.+++++ ++.++.|+.+.                            +..+++
T Consensus        19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   68 (107)
T 2i4a_A           19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPN   68 (107)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999999875 68888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  106 (107)
T 2i4a_A           69 AYQVR------SIPTLMLV-RDGKVIDKKVGA----LPKSQLKAWVESA  106 (107)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHT
T ss_pred             hcCCC------ccCEEEEE-eCCEEEEEecCC----CCHHHHHHHHHhc
Confidence            88885      46899999 899998876332    2466777766653

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.97  E-value=4.5e-09  Score=78.82  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=68.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| +.||++|....|.+.++.+++++ .+.++.|+.|.                            +.++++
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   69 (109)
T 3tco_A           20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDE----------------------------NQKIAD   69 (109)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEcccc----------------------------CHHHHH
Confidence            5889999999 99999999999999999999875 57777776642                            345777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    .+.+++.+.++.+
T Consensus        70 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  107 (109)
T 3tco_A           70 KYSVL------NIPTTLIF-VNGQLVDSLVGA----VDEDTLESTVNKY  107 (109)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             hcCcc------cCCEEEEE-cCCcEEEeeecc----CCHHHHHHHHHHH
Confidence            88885      56899999 899999886432    2566777776654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.96  E-value=2.8e-09  Score=79.64  Aligned_cols=89  Identities=18%  Similarity=0.307  Sum_probs=66.8

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++.++++++|+|| +.||++|....|.+.++.++++ .++.++.|+.|.                            +.+
T Consensus        16 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~----------------------------~~~   65 (106)
T 1xwb_A           16 TKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE----------------------------CED   65 (106)
T ss_dssp             HHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc----------------------------hHH
Confidence            3447889999999 8999999999999999999886 368888887652                            245


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++.|++.      ..|+.+++ ++|+++..+.+     .+.+++.+.++.
T Consensus        66 ~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~i~~  104 (106)
T 1xwb_A           66 IAMEYNIS------SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIKA  104 (106)
T ss_dssp             HHHHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred             HHHHcCCC------cccEEEEE-cCCcEEEEEcC-----CCHHHHHHHHHH
Confidence            77788885      45775555 79999887633     245666666654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.96  E-value=2.7e-09  Score=82.33  Aligned_cols=100  Identities=13%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             CCceEEcC-cc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccc
Q psy16151         83 QLKEIKLS-DY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK  159 (299)
Q Consensus        83 ~G~~v~Ls-d~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~  159 (299)
                      +|...++. .+  .|+++||+|| ++||++|....|.|.++.+++  .++.++.|+.|.                     
T Consensus         9 ~g~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------   64 (118)
T 2f51_A            9 NGTHEALLNRIKEAPGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK---------------------   64 (118)
T ss_dssp             CSCHHHHHHHHHHCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT---------------------
T ss_pred             cCCHHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC---------------------
Confidence            34444454 23  4789999999 999999999999999999988  578898887753                     


Q ss_pred             eeeeecCchHHHHHhCCcccCCCCceeEEEEEeC---CCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        160 IPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDR---NGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       160 ~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~---dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                             +.++++.|++.      ..|++++++.   +|+++.+..+     ....++.+.+.....+
T Consensus        65 -------~~~~~~~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G-----~~~~~l~~~~~~~~~~  114 (118)
T 2f51_A           65 -------NGNAADAYGVS------SIPALFFVKKEGNEIKTLDQFVG-----ADVSRIKADIEKFKHH  114 (118)
T ss_dssp             -------CHHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEES-----CCHHHHHHHHHHHC--
T ss_pred             -------CHHHHHhcCCC------CCCEEEEEeCCCCcceEEEeecC-----CCHHHHHHHHHHhhhc
Confidence                   13577788886      4689999976   4899887743     3456677777766543

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.95  E-value=4.1e-09  Score=78.50  Aligned_cols=88  Identities=14%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++..|++++|+|| +.|||+|....|.+.++.++++  ++.++.|+.|.                            ..+
T Consensus        15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~   63 (104)
T 2vim_A           15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ----------------------------NEE   63 (104)
T ss_dssp             HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC----------------------------CHH
Confidence            3457889999999 9999999999999999998885  78888887753                            235


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++.|++.      ..|+.+++ ++|+++....+     .+.+++.+.++.
T Consensus        64 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~l~~~l~~  102 (104)
T 2vim_A           64 AAAKYSVT------AMPTFVFI-KDGKEVDRFSG-----ANETKLRETITR  102 (104)
T ss_dssp             HHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred             HHHHcCCc------cccEEEEE-eCCcEEEEEeC-----CCHHHHHHHHHh
Confidence            67788875      46886666 59999887633     245666666654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.95  E-value=4.5e-09  Score=78.97  Aligned_cols=88  Identities=14%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   68 (108)
T 2trx_A           19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP   68 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CTTHHH
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence            5789999998 99999999999999999998875 57788777653                            124677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    .+.+++.+.++.+
T Consensus        69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  106 (108)
T 2trx_A           69 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  106 (108)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HcCCc------ccCEEEEE-eCCEEEEEEecC----CCHHHHHHHHHHh
Confidence            88886      46899999 899998876432    2456666666543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.95  E-value=2.7e-09  Score=94.88  Aligned_cols=91  Identities=10%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ...+||+|||+|| ++||++|....|.+.++.+++++ ++.++.|++|..                            .+
T Consensus        22 ~~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~   71 (287)
T 3qou_A           22 EQSMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE----------------------------QM   71 (287)
T ss_dssp             TTTTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC----------------------------HH
T ss_pred             HhcCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC----------------------------HH
Confidence            3345899999999 99999999999999999999985 588888877531                            26


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++.|+|.      ..|+++++ ++|+++..+.+.    ...+.+...+...
T Consensus        72 ~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~  112 (287)
T 3qou_A           72 IAAQFGLR------AIPTVYLF-QNGQPVDGFQGP----QPEEAIRALLDXV  112 (287)
T ss_dssp             HHHTTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HHHHcCCC------CCCeEEEE-ECCEEEEEeeCC----CCHHHHHHHHHHH
Confidence            77788886      56898888 799998876432    2345566665554

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.95  E-value=4.4e-11  Score=98.26  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=72.4

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  164 (299)
                      +.++++..+||+|||+|| ++||++|....|.|.++.+.++. ++.++.|++|.....                      
T Consensus        37 ~~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~----------------------   92 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEP----------------------   92 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSC----------------------
T ss_pred             HHHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchH----------------------
Confidence            456677778999999999 99999999999999997665543 577888887643210                      


Q ss_pred             cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC------CCCHHHHHHHHhhc
Q psy16151        165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV------GRSVDETLRLVQAF  221 (299)
Q Consensus       165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~------g~~~~evl~~l~~L  221 (299)
                           +...|++.    +...|+++++|++|+++....+....      ....+++++.++.+
T Consensus        93 -----~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~  146 (164)
T 1sen_A           93 -----KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA  146 (164)
T ss_dssp             -----SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred             -----HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence                 01123331    12469999999999998765432211      25677777777655

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.95  E-value=1.9e-09  Score=82.60  Aligned_cols=88  Identities=18%  Similarity=0.292  Sum_probs=66.2

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      +++.+||+++|+|| ++||++|....|.+.++.+++   ++.++.|+.|.                            +.
T Consensus        28 l~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~~   75 (117)
T 2xc2_A           28 LEQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------LE   75 (117)
T ss_dssp             HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------SH
T ss_pred             HHhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------cH
Confidence            34457899999999 999999999999999988776   68888887652                            24


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++++.|++.      ..|+.+++ ++|+++..+.+     ...+++.+.++.
T Consensus        76 ~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~  115 (117)
T 2xc2_A           76 ETARKYNIS------AMPTFIAI-KNGEKVGDVVG-----ASIAKVEDMIKK  115 (117)
T ss_dssp             HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred             HHHHHcCCC------ccceEEEE-eCCcEEEEEeC-----CCHHHHHHHHHH
Confidence            577788885      46775555 89999887633     245666666654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.95  E-value=4.6e-09  Score=80.94  Aligned_cols=110  Identities=14%  Similarity=0.207  Sum_probs=72.2

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCcc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      ..|...|.+.+.+.   +.-.-.+.+.  .+|++||+|| ++||++|....|.|.++.+++++  +.++.|+.|.     
T Consensus         7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~-----   75 (122)
T 2vlu_A            7 AAAVAAEVISVHSL---EQWTMQIEEANTAKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE-----   75 (122)
T ss_dssp             -----CCCEEECSH---HHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-----
T ss_pred             ccCCCCcceeccCH---HHHHHHHHHhhccCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC-----
Confidence            34666676665421   1111112222  5889999999 99999999999999999998874  8888887753     


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                                             +.++++.|++.      ..|+.+++ ++|+++..+.+..     .+++.+.++.+
T Consensus        76 -----------------------~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~  118 (122)
T 2vlu_A           76 -----------------------LKPIAEQFSVE------AMPTFLFM-KEGDVKDRVVGAI-----KEELTAKVGLH  118 (122)
T ss_dssp             -----------------------CHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred             -----------------------CHHHHHHcCCC------cccEEEEE-eCCEEEEEEeCcC-----HHHHHHHHHHH
Confidence                                   23577788885      45775555 8999988763321     55666666554

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=4.6e-09  Score=81.98  Aligned_cols=89  Identities=12%  Similarity=0.168  Sum_probs=67.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh---cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~---~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .++++||+|| +.||++|....|.+.++++++++   .++.++.|..+.                            +..
T Consensus        24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~   74 (133)
T 1x5d_A           24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQV   74 (133)
T ss_dssp             SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHH
Confidence            4689999999 99999999999999999999973   357777776542                            246


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++.|++.      ..|+++++++ |+++..+.+    ....+++.+.+..+
T Consensus        75 l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G----~~~~~~l~~~l~~~  115 (133)
T 1x5d_A           75 LASRYGIR------GFPTIKIFQK-GESPVDYDG----GRTRSDIVSRALDL  115 (133)
T ss_dssp             HHHHHTCC------SSSEEEEEET-TEEEEEECS----CCSHHHHHHHHHHH
T ss_pred             HHHhCCCC------eeCeEEEEeC-CCceEEecC----CCCHHHHHHHHHHH
Confidence            78889986      5699999987 887766633    23456666666544

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.94  E-value=3.5e-09  Score=79.07  Aligned_cols=88  Identities=11%  Similarity=0.111  Sum_probs=67.8

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++.++|+++|+|| ++||++|....|.+.++.+++++  +.++.|+.|.                            ..+
T Consensus        16 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~----------------------------~~~   64 (105)
T 3m9j_A           16 DAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQD   64 (105)
T ss_dssp             HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTT----------------------------CHH
T ss_pred             HhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhh----------------------------hHH
Confidence            3446899999999 99999999999999999998864  8888887652                            235


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++.|++.      ..|+.+++ ++|+++..+.+.     ..+++.+.++.
T Consensus        65 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~  103 (105)
T 3m9j_A           65 VASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE  103 (105)
T ss_dssp             HHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred             HHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHH
Confidence            67788885      56899999 789988776322     45666666654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.94  E-value=2.7e-09  Score=80.24  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| ++||++|....|.+.++.+++.  ++.++.|+.|..                            .++++
T Consensus        17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~----------------------------~~l~~   65 (105)
T 4euy_A           17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDM----------------------------QEIAG   65 (105)
T ss_dssp             CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------------------------------
T ss_pred             cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCC----------------------------HHHHH
Confidence            5789999999 9999999999999999999884  688888776532                            24566


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|++++++ +|+++....+.    .+.+++.+.++.+
T Consensus        66 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~~  103 (105)
T 4euy_A           66 RYAVF------TGPTVLLFY-NGKEILRESRF----ISLENLERTIQLF  103 (105)
T ss_dssp             ----C------CCCEEEEEE-TTEEEEEEESS----CCHHHHHHHHHTT
T ss_pred             hcCCC------CCCEEEEEe-CCeEEEEEeCC----cCHHHHHHHHHHh
Confidence            77875      568998884 99998776432    2567777777654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.93  E-value=2.6e-09  Score=84.41  Aligned_cols=96  Identities=10%  Similarity=0.022  Sum_probs=68.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ++ ++||+|| ++||++|....|.+.+++++++   +.++.|++++.... .                  ..|...++++
T Consensus        31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~-~------------------~~d~~~~l~~   86 (135)
T 3emx_A           31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGE-R------------------ELSAARLEMN   86 (135)
T ss_dssp             TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCH-H------------------HHHHHHHHHH
T ss_pred             CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhh-h------------------hhhhhHHHHH
Confidence            44 8999999 9999999999999999988775   88999988654321 1                  1133467899


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+.++++ +|+++..+.+.    ...+.+.+.++.+..
T Consensus        87 ~~~v~------~~Pt~~~~~-~G~~v~~~~G~----~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           87 KAGVE------GTPTLVFYK-EGRIVDKLVGA----TPWSLKVEKAREIYG  126 (135)
T ss_dssp             HHTCC------SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHHC-
T ss_pred             HcCCc------eeCeEEEEc-CCEEEEEEeCC----CCHHHHHHHHHHHhC
Confidence            99996      568666665 99999887433    244555555665543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.93  E-value=7.1e-09  Score=76.83  Aligned_cols=87  Identities=15%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ++++++|+|| +.|||+|....|.+.++.+++++  +.++.|+.|.                            +.++++
T Consensus        15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~~   63 (104)
T 2e0q_A           15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIAA   63 (104)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999988875  8888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        64 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  101 (104)
T 2e0q_A           64 RYGVM------SLPTVIFF-KDGEPVDEIIGA----VPREEIEIRIKNL  101 (104)
T ss_dssp             HTTCC------SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             hCCcc------ccCEEEEE-ECCeEhhhccCC----CCHHHHHHHHHHH
Confidence            88885      46898888 899998876432    2456666666544

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.93  E-value=5.1e-09  Score=78.81  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=64.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+++|+|| ++||++|....|.+.++.+++.  ++.++.|+.|..                            .++++
T Consensus        20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~----------------------------~~~~~   68 (107)
T 1gh2_A           20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQC----------------------------QGTAA   68 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS----------------------------HHHHH
T ss_pred             CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccC----------------------------HHHHH
Confidence            5789999999 9999999999999999999883  688888876531                            35677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+.+++ ++|+++..+.+     ...+++.+.++.
T Consensus        69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~  104 (107)
T 1gh2_A           69 TNNIS------ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQ  104 (107)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred             hcCCC------cccEEEEE-ECCeEEEEEeC-----CCHHHHHHHHHH
Confidence            88885      46887777 79999887643     233455555544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.92  E-value=6.8e-09  Score=79.58  Aligned_cols=85  Identities=14%  Similarity=0.212  Sum_probs=64.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +||++||+|| ++||++|....|.|.++.+++++  +.++.|+.|.                            +.++++
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~----------------------------~~~l~~   77 (114)
T 2oe3_A           29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE----------------------------SPDIAK   77 (114)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHHHHH
Confidence            5789999999 99999999999999999998864  8888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+.+++ ++|+++....+.     ..+++.+.++.
T Consensus        78 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~  113 (114)
T 2oe3_A           78 ECEVT------AMPTFVLG-KDGQLIGKIIGA-----NPTALEKGIKD  113 (114)
T ss_dssp             HTTCC------SBSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHT
T ss_pred             HCCCC------cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHh
Confidence            88885      46786655 899998876332     15566666553

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.92  E-value=8.3e-09  Score=80.37  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| +.||++|....|.+.++.+++++ .+.++.|..|.                            +.++++
T Consensus        34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~   83 (130)
T 2dml_A           34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNADK----------------------------HQSLGG   83 (130)
T ss_dssp             CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCC----------------------------CHHHHH
Confidence            4689999999 99999999999999999999875 47777776532                            346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|++++++++|+++..+.+    ....+++.+.+..
T Consensus        84 ~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~  121 (130)
T 2dml_A           84 QYGVQ------GFPTIKIFGANKNKPEDYQG----GRTGEAIVDAALS  121 (130)
T ss_dssp             HHTCC------SSSEEEEESSCTTSCEECCS----CCSHHHHHHHHHH
T ss_pred             HcCCC------ccCEEEEEeCCCCeEEEeec----CCCHHHHHHHHHH
Confidence            88886      56999999998885555422    2345666666544

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.92  E-value=2.5e-09  Score=86.33  Aligned_cols=92  Identities=15%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+|||+|| ++||++|..+.|.|.++++++++ .+.++.|++|.                            ..++++
T Consensus        22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~----------------------------~~~l~~   71 (149)
T 3gix_A           22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQ----------------------------TAVYTQ   71 (149)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTT-TEEEEEEETTT----------------------------CCHHHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCc----------------------------CHHHHH
Confidence            4789999999 99999999999999999988865 37777776542                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC----C--CCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP----V--GRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~----~--g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++ ++++|+++....+...    .  ..+.+++.+.++.+
T Consensus        72 ~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           72 YFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             HTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             HcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            88886      468888 6789999854432111    1  22445666666554

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.92  E-value=2.3e-09  Score=84.05  Aligned_cols=88  Identities=13%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| ++||++|....|.+.++.+++++ ++.++.|+.|..                            .++++
T Consensus        39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~   88 (128)
T 2o8v_B           39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   88 (128)
T ss_dssp             CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------CTTSG
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHH
Confidence            5789999998 99999999999999999999875 588888887632                            13455


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        89 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  126 (128)
T 2o8v_B           89 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  126 (128)
T ss_dssp             GGTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HcCCC------ccCEEEEE-eCCEEEEEEcCC----CCHHHHHHHHHHh
Confidence            67775      46899999 899998876432    2456676666543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.92  E-value=2.8e-09  Score=83.44  Aligned_cols=93  Identities=9%  Similarity=0.148  Sum_probs=63.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      .++++||+|| ++||++|....|.|.++++++++. ++.++.|..+..                            ..++
T Consensus        24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~   74 (133)
T 2dj3_A           24 PKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN----------------------------DITN   74 (133)
T ss_dssp             TTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS----------------------------CCCC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC----------------------------HHHH
Confidence            4789999999 999999999999999999999853 466666654321                            0122


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +.|++.      ..|+++++++.|++......+  ...+.+++.+.++.+.
T Consensus        75 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~g--g~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           75 DQYKVE------GFPTIYFAPSGDKKNPIKFEG--GNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             SSCCCS------SSSEEEEECTTCTTSCEECCS--SCCSTTHHHHHHHHHS
T ss_pred             hhcCCC------cCCEEEEEeCCCcccceEecC--CCcCHHHHHHHHHHhc
Confidence            356775      468999998877654332211  1134566777766554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.91  E-value=9.9e-09  Score=88.13  Aligned_cols=90  Identities=13%  Similarity=0.252  Sum_probs=69.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| ++||++|+...|.+.++++++++ .+.++.|+.|..                            ..+++
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~l~~   78 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP   78 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC----------------------------TTTGG
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCC----------------------------HHHHH
Confidence            5789999999 99999999999999999999985 488888887532                            12445


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+++++ ++|+++....+.    ...+++.+.++.+..
T Consensus        79 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           79 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDANLA  118 (222)
T ss_dssp             GGTCC------SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHSC
T ss_pred             HcCCC------cCCEEEEE-ECCeEEEEeccc----cChHHHHHHHHhhcc
Confidence            67875      46888777 589998876432    356788888777654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.91  E-value=7.3e-09  Score=79.03  Aligned_cols=86  Identities=16%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .||++||+|| +.||++|....|.+.++.++++  ++.++.|+.|.                            ...+++
T Consensus        27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~~~~   75 (118)
T 2vm1_A           27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE----------------------------LKDVAE   75 (118)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------CHHHHH
Confidence            4889999999 8999999999999999998886  68888887642                            245677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++....+     ...+++.+.++.+
T Consensus        76 ~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~~  112 (118)
T 2vm1_A           76 AYNVE------AMPTFLFI-KDGEKVDSVVG-----GRKDDIHTKIVAL  112 (118)
T ss_dssp             HTTCC------SBSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred             HcCCC------cCcEEEEE-eCCeEEEEecC-----CCHHHHHHHHHHH
Confidence            88885      46887666 79999887633     2456777776654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.90  E-value=8.3e-09  Score=78.46  Aligned_cols=86  Identities=8%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .||++||+|| +.||++|....|.+.++.++++  ++.++.|+.|..                            ..+++
T Consensus        25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~----------------------------~~~~~   73 (112)
T 1syr_A           25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEV----------------------------SEVTE   73 (112)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTT----------------------------HHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCC----------------------------HHHHH
Confidence            6789999999 9999999999999999998876  588888876532                            25677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.     +.+++.+.++.+
T Consensus        74 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  110 (112)
T 1syr_A           74 KENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEKY  110 (112)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred             HcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence            88875      45775554 799998876321     467777777654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.90  E-value=8e-09  Score=83.80  Aligned_cols=88  Identities=9%  Similarity=0.113  Sum_probs=69.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| +.||++|....|.|.++++++++ ++.++.|+.|.                            +.++++
T Consensus        63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~  112 (155)
T 2ppt_A           63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAG  112 (155)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHH
Confidence            5789999999 99999999999999999999975 48888887752                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    .+.+++.+.++.+
T Consensus       113 ~~~i~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  150 (155)
T 2ppt_A          113 RHRIQ------GIPAFILF-HKGRELARAAGA----RPASELVGFVRGK  150 (155)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HcCCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHHH
Confidence            89986      56898888 799998876432    2466777776654

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.90  E-value=1.2e-08  Score=76.38  Aligned_cols=88  Identities=11%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| +.||+.|....|.+.++.+++.+ ++.++.|+.|.                            +.++++
T Consensus        17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   66 (109)
T 2yzu_A           17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE----------------------------NPKTAM   66 (109)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------CHhHHH
Confidence            4789999999 99999999999999999998875 58888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        67 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  104 (109)
T 2yzu_A           67 RYRVM------SIPTVILF-KDGQPVEVLVGA----QPKRNYQAKIEKH  104 (109)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred             hCCCC------cCCEEEEE-eCCcEeeeEeCC----CCHHHHHHHHHHH
Confidence            88885      46899998 899998876432    2467777777655

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.90  E-value=7.1e-09  Score=80.97  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.|.++.+++.  ++.++.|.+|.                            +.++++
T Consensus        36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~   84 (125)
T 1r26_A           36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVS   84 (125)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence            6789999999 9999999999999999999884  68888888753                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+     ...+++.+.++.+
T Consensus        85 ~~~v~------~~Pt~~i~-~~G~~~~~~~G-----~~~~~l~~~l~~~  121 (125)
T 1r26_A           85 KCRVL------QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRDI  121 (125)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred             HcCCC------cccEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHHH
Confidence            88886      46886555 89999887633     2456666666554

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.89  E-value=4.6e-09  Score=79.53  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=64.3

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ..|+++||+|| ++||++|....+.+.++.+++.  ++.++.|+.|.                            ...++
T Consensus        24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~   72 (113)
T 1ti3_A           24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE----------------------------LKAVA   72 (113)
T ss_dssp             TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------CHHHH
T ss_pred             hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc----------------------------cHHHH
Confidence            35889999999 8999999999999999998885  68888887643                            23566


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +.|++.      ..|+.+++ ++|+++..+.+ .    +.+++.+.++.
T Consensus        73 ~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~l~~  109 (113)
T 1ti3_A           73 EEWNVE------AMPTFIFL-KDGKLVDKTVG-A----DKDGLPTLVAK  109 (113)
T ss_dssp             HHHHCS------STTEEEEE-ETTEEEEEEEC-C----CTTHHHHHHHH
T ss_pred             HhCCCC------cccEEEEE-eCCEEEEEEec-C----CHHHHHHHHHH
Confidence            778875      45787777 79999887743 2    23455555544

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.89  E-value=1e-08  Score=77.95  Aligned_cols=87  Identities=11%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.+.++.+++.  ++.++.|..+.                            +.++++
T Consensus        18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~~   66 (110)
T 2l6c_A           18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA----------------------------RPELMK   66 (110)
T ss_dssp             TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG----------------------------CHHHHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC----------------------------CHHHHH
Confidence            4678999998 9999999999999999887764  57777665532                            345778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++....+.    .+.+++.+.+...
T Consensus        67 ~~~v~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~~~~~  104 (110)
T 2l6c_A           67 ELGFE------RVPTLVFI-RDGKVAKVFSGI----MNPRELQALYASI  104 (110)
T ss_dssp             HTTCC------SSCEEEEE-ESSSEEEEEESC----CCHHHHHHHHHTC
T ss_pred             HcCCc------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHH
Confidence            88886      56899999 899998876432    2567777777655

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.40  E-value=1.9e-10  Score=89.97  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce
Q psy16151         84 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI  160 (299)
Q Consensus        84 G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~  160 (299)
                      .+.++++...||++||+|| ++||++|....|.+   .++.+.+++ ++.++.|..|+.                     
T Consensus         9 ~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------   65 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------   65 (130)
Confidence            5678888889999999999 99999999999998   777776654 566666665432                     


Q ss_pred             eeeecCchHHHHHhCCcccCCCCceeEEEEEeC-CCcE--EEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        161 PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDR-NGVL--RQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       161 p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~-dG~I--~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                           ....+++.|++.      ..|+++++|+ +|++  +....+..    ..+++.+.++.+
T Consensus        66 -----~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~~----~~~~l~~~l~~~  114 (130)
T 2lst_A           66 -----EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGSR----PRAEFLKELRQV  114 (130)
Confidence                 124567778875      5699999996 5998  66553322    234555555544

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.88  E-value=1.5e-08  Score=76.35  Aligned_cols=88  Identities=11%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|.|| +.||++|....|.+.++.+++++ ++.++.|..|.                            +..+++
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   70 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE----------------------------EKTLFQ   70 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------ChhHHH
Confidence            4689999999 99999999999999999999875 58888887653                            236777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        71 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  108 (111)
T 3gnj_A           71 RFSLK------GVPQILYF-KDGEYKGKMAGD----VEDDEVEQMIADV  108 (111)
T ss_dssp             HTTCC------SSCEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHH
T ss_pred             hcCCC------cCCEEEEE-ECCEEEEEEecc----CCHHHHHHHHHHH
Confidence            88885      56899888 799988776432    3456666666543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.86  E-value=1.8e-08  Score=75.03  Aligned_cols=87  Identities=10%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| ++||++|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   66 (105)
T 1fb6_A           17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIAT   66 (105)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHH
Confidence            4689999999 99999999999999999998875 47887777653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.
T Consensus        67 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~~  103 (105)
T 1fb6_A           67 QYNIR------SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEK  103 (105)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHH
T ss_pred             hCCCC------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHh
Confidence            88875      45786666 799998876433    235566666654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=9.3e-09  Score=79.78  Aligned_cols=87  Identities=10%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  174 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~  174 (299)
                      +.+||+|| ++||++|....|.+.++++++++.++.++.|..|.                            +..+++.|
T Consensus        23 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~~~~~   73 (126)
T 1x5e_A           23 GDWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------QPGLSGRF   73 (126)
T ss_dssp             SEEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------CHHHHHHT
T ss_pred             CCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------CHHHHHHc
Confidence            34888888 99999999999999999999987788888887652                            23477888


Q ss_pred             CCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        175 GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       175 gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.      ..|+++++ ++|++ ..+ .   .....+++.+.++.+.
T Consensus        74 ~v~------~~Pt~~~~-~~G~~-~~~-~---G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           74 IIN------ALPTIYHC-KDGEF-RRY-Q---GPRTKKDFINFISDKE  109 (126)
T ss_dssp             TCC------SSSEEEEE-ETTEE-EEC-C---SCCCHHHHHHHHHTCG
T ss_pred             CCc------ccCEEEEE-eCCeE-EEe-e---cCCCHHHHHHHHHHHh
Confidence            885      56899999 89996 333 1   1345677777777653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.84  E-value=2.1e-08  Score=76.92  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .|++++|+|| ++|||+|+...|.+.++.++++   ..++.+.++...+.                      +....+++
T Consensus        28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~   81 (118)
T 1zma_A           28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS   81 (118)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred             CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence            5789999999 9999999999999999988764   45677776643211                      11246778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      .||+.      ..|+++++ ++|+++.+..+    ....+++.+.+
T Consensus        82 ~~~i~------~~Pt~~~~-~~G~~~~~~~G----~~~~~~l~~~l  116 (118)
T 1zma_A           82 RYGIP------TVPGFVHI-TDGQINVRCDS----SMSAQEIKDFA  116 (118)
T ss_dssp             HHTCC------SSCEEEEE-ETTEEEEECCT----TCCHHHHHHHH
T ss_pred             HcCCC------CCCeEEEE-ECCEEEEEecC----CCCHHHHHHHh
Confidence            89986      56898888 58998866532    22455665554

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.82  E-value=9.5e-09  Score=82.17  Aligned_cols=92  Identities=10%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.|.++++++++ ++.++.|++|..                            .++++
T Consensus        22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~~~~   71 (142)
T 1qgv_A           22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV----------------------------PDFNK   71 (142)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC----------------------------HHHHH
Confidence            4789999999 99999999999999999999865 588888887632                            12455


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC----CC-C-CHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP----VG-R-SVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~----~g-~-~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++....+...    .+ . +.+++.+.++.+
T Consensus        72 ~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           72 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             HcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            67775      46898888 58998876543211    11 1 356666666554

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.82  E-value=2.3e-08  Score=79.37  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| +.||++|....|.+.++.+++++ .+.++.|..|.                            +.++++
T Consensus        23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   72 (140)
T 3hz4_A           23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT----------------------------NPWTAE   72 (140)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc----------------------------CHhHHH
Confidence            3789999999 99999999999999999999976 48888887542                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        73 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  110 (140)
T 3hz4_A           73 KYGVQ------GTPTFKFF-CHGRPVWEQVGQ----IYPSILKNAVRDM  110 (140)
T ss_dssp             HHTCC------EESEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHH
T ss_pred             HCCCC------cCCEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence            88886      56877777 899998776433    2456666666554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.81  E-value=8.3e-09  Score=79.45  Aligned_cols=92  Identities=10%  Similarity=0.043  Sum_probs=67.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.+.++++++++ ++.++.|..+..                            .++++
T Consensus        20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~   69 (122)
T 3aps_A           20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAY----------------------------PQTCQ   69 (122)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC----------------------------HHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCC----------------------------HHHHH
Confidence            4678999999 99999999999999999999875 688888877531                            25677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|++++++++|++.... +......+.+++.+.++.+
T Consensus        70 ~~~v~------~~Pt~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~l~~~  111 (122)
T 3aps_A           70 KAGIK------AYPSVKLYQYERAKKSIW-EEQINSRDAKTIAALIYGK  111 (122)
T ss_dssp             HTTCC------SSSEEEEEEEEGGGTEEE-EEEECCSCHHHHHHHHHHH
T ss_pred             HcCCC------ccceEEEEeCCCccceee-ccccCcCCHHHHHHHHHHH
Confidence            88886      568999998888753222 2111123566666666554

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.79  E-value=4.3e-08  Score=75.07  Aligned_cols=88  Identities=14%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| +.||++|....|.+.++.+++++ ++.++.|+.+.                            +..+++
T Consensus        29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   78 (121)
T 2i1u_A           29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT----------------------------NPETAR   78 (121)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHH
Confidence            4789999999 99999999999999999998875 58888887653                            235677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        79 ~~~i~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~~~  116 (121)
T 2i1u_A           79 NFQVV------SIPTLILF-KDGQPVKRIVGA----KGKAALLRELSDV  116 (121)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTCSC
T ss_pred             hcCCC------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHHHH
Confidence            88885      46887777 599998776332    2456777777654

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=2.6e-08  Score=78.61  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=60.1

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      +-+++++||+|| ++||++|....|.+.++++++++.++.++.|..+..                            .++
T Consensus        23 ~~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~----------------------------~~~   73 (137)
T 2dj0_A           23 RDKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY----------------------------TDV   73 (137)
T ss_dssp             HSTTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC----------------------------HHH
T ss_pred             cCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC----------------------------HHH
Confidence            335668999999 999999999999999999999866788887776542                            123


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      ++.|++.....-...|+++++ ++|+++..+.+.
T Consensus        74 ~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~  106 (137)
T 2dj0_A           74 STRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQI  106 (137)
T ss_dssp             HHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCB
T ss_pred             HHHccCcccCCcCCCCEEEEE-ECCEEEEEecCc
Confidence            444554210000146888888 799998877543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.76  E-value=7.7e-09  Score=87.95  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=71.5

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  164 (299)
                      +.+......|+++||+|| ++||++|....|.+.++.+++++ .+.++.|..+.                          
T Consensus       105 ~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~--------------------------  156 (210)
T 3apq_A          105 REFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD--------------------------  156 (210)
T ss_dssp             HHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT--------------------------
T ss_pred             HHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc--------------------------
Confidence            333333347899999999 99999999999999999999865 58888877543                          


Q ss_pred             cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                        +..+++.|++.      ..|+++++ ++|+++..+.+    ..+.+++.+.+..+
T Consensus       157 --~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G----~~~~~~l~~~i~~~  200 (210)
T 3apq_A          157 --DRMLCRMKGVN------SYPSLFIF-RSGMAAVKYNG----DRSKESLVAFAMQH  200 (210)
T ss_dssp             --CHHHHHHTTCC------SSSEEEEE-CTTSCCEECCS----CCCHHHHHHHHHHH
T ss_pred             --cHHHHHHcCCC------cCCeEEEE-ECCCceeEecC----CCCHHHHHHHHHHh
Confidence              23567778885      46898888 99998776532    23566777777654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.76  E-value=2.7e-08  Score=74.84  Aligned_cols=87  Identities=17%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ++++||+|| ++||++|....|.+.++.+++.+.  ++.++.|..+.                            +.+++
T Consensus        21 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~l~   71 (111)
T 3uvt_A           21 EGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA----------------------------ERNIC   71 (111)
T ss_dssp             SSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT----------------------------CHHHH
T ss_pred             CCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc----------------------------cHhHH
Confidence            789999998 999999999999999998877643  56666665542                            23577


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +.|++.      ..|+.+++ ++|+++..+.+    ..+.+++.+.++.
T Consensus        72 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~l~~  109 (111)
T 3uvt_A           72 SKYSVR------GYPTLLLF-RGGKKVSEHSG----GRDLDSLHRFVLS  109 (111)
T ss_dssp             HHTTCC------SSSEEEEE-ETTEEEEEECS----CCSHHHHHHHHHH
T ss_pred             HhcCCC------cccEEEEE-eCCcEEEeccC----CcCHHHHHHHHHh
Confidence            788885      46887777 79998877633    2356777777654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.76  E-value=1.1e-08  Score=77.91  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .+|+++|+|| +.||++|....|.+.++.+++++.+  +.++.|..+.                            +..+
T Consensus        23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~   73 (120)
T 1mek_A           23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE----------------------------ESDL   73 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT----------------------------CCSS
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC----------------------------CHHH
Confidence            5789999999 9999999999999999999987643  4454444331                            2256


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEE--EEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLR--QITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~--~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.|++.      ..|+++++ ++|+++  ..+.+    ....+++.+.++.+.
T Consensus        74 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g----~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           74 AQQYGVR------GYPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKRT  116 (120)
T ss_dssp             HHHHTCC------SSSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTTS
T ss_pred             HHHCCCC------cccEEEEE-eCCCcCCcccccC----ccCHHHHHHHHHhcc
Confidence            7788885      46899999 688865  44322    346778888887654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.73  E-value=6.7e-08  Score=75.10  Aligned_cols=91  Identities=9%  Similarity=-0.001  Sum_probs=65.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh----cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~----~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      .++++||+|| ++||++|....|.+.++.+++..    .++.++.|..|                            .+.
T Consensus        32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~----------------------------~~~   82 (127)
T 3h79_A           32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE----------------------------KYP   82 (127)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT----------------------------TCH
T ss_pred             CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc----------------------------ccH
Confidence            4789999999 99999999999999999988863    23555555443                            235


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++++.|++.      ..|+++++++.+++....+   ....+.+++.+.+..+
T Consensus        83 ~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~---~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           83 DVIERMRVS------GFPTMRYYTRIDKQEPFEY---SGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HHHHHTTCC------SSSEEEEECSSCSSSCEEC---CSCCCHHHHHHHHHHH
T ss_pred             hHHHhcCCc------cCCEEEEEeCCCCCCceEe---cCCccHHHHHHHHHhc
Confidence            678889986      5689999987776531221   1235677888777653

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.71  E-value=9.5e-08  Score=75.52  Aligned_cols=88  Identities=14%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++.+||+|| +.||++|....|.|.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        49 ~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~   98 (140)
T 1v98_A           49 GAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE----------------------------HPGLAA   98 (140)
T ss_dssp             CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHHH
Confidence            3444888888 99999999999999999999875 58888887653                            235777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.+
T Consensus        99 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~  136 (140)
T 1v98_A           99 RYGVR------SVPTLVLF-RRGAPVATWVGA----SPRRVLEERLRPY  136 (140)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HCCCC------ccCEEEEE-eCCcEEEEEeCC----CCHHHHHHHHHHH
Confidence            88885      46888888 799998876432    2456666666654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.70  E-value=2.8e-08  Score=76.23  Aligned_cols=87  Identities=7%  Similarity=0.086  Sum_probs=63.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh----cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~----~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      ++++++|+|| ++||++|....|.+.++++++++    .++.++.|..+..                 .     +.    
T Consensus        24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------~-----~~----   76 (121)
T 2djj_A           24 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-----------------D-----VP----   76 (121)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-----------------C-----CS----
T ss_pred             CCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-----------------c-----cc----
Confidence            6789999999 99999999999999999999986    2677877776531                 1     11    


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                         +  ++.      ..|++++++++|++ +..+.    ...+.+++.+.++.+
T Consensus        77 ---~--~v~------~~Pt~~~~~~~~~~~~~~~~----G~~~~~~l~~~i~~~  115 (121)
T 2djj_A           77 ---D--EIQ------GFPTIKLYPAGAKGQPVTYS----GSRTVEDLIKFIAEN  115 (121)
T ss_dssp             ---S--CCS------SSSEEEEECSSCTTSCCCCC----CCSCHHHHHHHHHHT
T ss_pred             ---c--ccC------cCCeEEEEeCcCCCCceEec----CCCCHHHHHHHHHhc
Confidence               1  443      46899999988884 33321    134677888877765

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.70  E-value=3.6e-08  Score=76.61  Aligned_cols=88  Identities=14%  Similarity=0.266  Sum_probs=62.9

Q ss_pred             CCCeEEEEEEeCCCCC--------------CchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcc
Q psy16151         93 YGKYLVFFFYPLDFTF--------------VCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKL  158 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp--------------~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~  158 (299)
                      .||++||+|| ++||+              +|....|.+.++.+++++ ++.++.|+.|..                   
T Consensus        20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~-------------------   78 (123)
T 1oaz_A           20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-------------------   78 (123)
T ss_dssp             CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSC-------------------
T ss_pred             CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCC-------------------
Confidence            5789999999 99999              999999999999888875 588888876531                   


Q ss_pred             ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        159 KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       159 ~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                               .++++.||+.      ..|+++++ ++|+++....+.    ...+++.+.++.+
T Consensus        79 ---------~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  121 (123)
T 1oaz_A           79 ---------PGTAPKYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  121 (123)
T ss_dssp             ---------TTTGGGGTCC------BSSEEEEE-ESSSEEEEEESC----CCHHHHHHHHTTT
T ss_pred             ---------HHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHH
Confidence                     2456678885      56899999 899998876432    2466777777654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.68  E-value=7.7e-08  Score=75.98  Aligned_cols=89  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +||++||+|| ++||++|....|.|.++.+++.  ++.++.|.++..                 .              +
T Consensus        29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~-----------------~--------------~   74 (135)
T 2dbc_A           29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSC-----------------I--------------E   74 (135)
T ss_dssp             SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSS-----------------C--------------S
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcC-----------------c--------------c
Confidence            4579999999 9999999999999999998874  577777766531                 0              2


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCC---CCHHHHHHHHhhcc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVG---RSVDETLRLVQAFH  222 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g---~~~~evl~~l~~L~  222 (299)
                      .|++.      ..|++++++ +|+++....+....+   ...+++.+.+....
T Consensus        75 ~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           75 HYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             cCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            46664      468988885 999988876543222   25677777776654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.67  E-value=2.4e-08  Score=77.45  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=61.8

Q ss_pred             CccCCCeEEEEEEeCC-------CCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151         90 SDYYGKYLVFFFYPLD-------FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  162 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~-------~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  162 (299)
                      .+..|++++|+|| ++       ||++|....|.|.++++++++ ++.++.|.+++..   .|.                
T Consensus        20 ~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~~----------------   78 (123)
T 1wou_A           20 EQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YWK----------------   78 (123)
T ss_dssp             HTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HHH----------------
T ss_pred             HHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hhh----------------
Confidence            3345899999999 88       999999999999999888864 7899999887642   232                


Q ss_pred             eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151        163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVL  197 (299)
Q Consensus       163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I  197 (299)
                        |.+..+++.|++.      ..|+++++++.+++
T Consensus        79 --d~~~~~~~~~~i~------~~Pt~~~~~~~~~~  105 (123)
T 1wou_A           79 --DPNNDFRKNLKVT------AVPTLLKYGTPQKL  105 (123)
T ss_dssp             --CTTCHHHHHHCCC------SSSEEEETTSSCEE
T ss_pred             --chhHHHHHHCCCC------eeCEEEEEcCCceE
Confidence              3456788889986      57899999873333

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.67  E-value=6.3e-08  Score=83.27  Aligned_cols=92  Identities=12%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .+|++++|+|| ++||++|+...|.+.++++++++.+  +.++.|..+                            .+.+
T Consensus        30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~   80 (241)
T 3idv_A           30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT----------------------------SASV   80 (241)
T ss_dssp             TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT----------------------------TCHH
T ss_pred             hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc----------------------------CCHH
Confidence            36899999999 9999999999999999999998765  666666553                            2346


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      +++.|++.      ..|++++++ +|+++. +    ......+++.+.+.....+
T Consensus        81 l~~~~~v~------~~Pt~~~~~-~g~~~~-~----~g~~~~~~l~~~i~~~~~~  123 (241)
T 3idv_A           81 LASRFDVS------GYPTIKILK-KGQAVD-Y----EGSRTQEEIVAKVREVSQP  123 (241)
T ss_dssp             HHHHTTCC------SSSEEEEEE-TTEEEE-C----CSCSCHHHHHHHHHHHHST
T ss_pred             HHHhcCCC------cCCEEEEEc-CCCccc-c----cCcccHHHHHHHHhhccCc
Confidence            78889986      568988885 677662 2    1234567777777665443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.66  E-value=1e-07  Score=78.84  Aligned_cols=107  Identities=5%  Similarity=-0.124  Sum_probs=65.8

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHH---HHHHHHHHhhcCcEEEEEeCCCHHhH-HHHhhcccccCCCCccce
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILA---FNDRLEEFHQINTEVVAASVDSHFTH-LAWVNTPRKEGGLGKLKI  160 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~---l~~l~~~~~~~gv~vi~Vs~d~~~~~-~~~~~~~~~~~~~~~~~~  160 (299)
                      +.+..+...||+|+|+|| ++||++|+...+.   ..++.+.+.+ ++.++-|..|...+. ..+.+             
T Consensus        30 ea~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~-------------   94 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT-------------   94 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH-------------
T ss_pred             HHHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH-------------
Confidence            445566668999999999 9999999987662   2344454543 566666666532222 12111             


Q ss_pred             eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC----CCCHHHHHHHHhh
Q psy16151        161 PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV----GRSVDETLRLVQA  220 (299)
Q Consensus       161 p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~----g~~~~evl~~l~~  220 (299)
                              .+...+|+.      ..|+++++|++|++++...+-...    .....++++.+..
T Consensus        95 --------~~q~~~gv~------g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~  144 (173)
T 3ira_A           95 --------VCQIILGRG------GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKE  144 (173)
T ss_dssp             --------HHHHHHSCC------CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred             --------HHHHHcCCC------CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence                    112224664      469999999999999875332221    1345666665544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.64  E-value=7.9e-09  Score=80.31  Aligned_cols=87  Identities=15%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         92 YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      ..+|++||+|| +.||++|....|.|.++.++++  ++.++.|+.|.                            +.+++
T Consensus        34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~   82 (130)
T 1wmj_A           34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE----------------------------LKEVA   82 (130)
T ss_dssp             TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT----------------------------SGGGH
T ss_pred             hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc----------------------------hHHHH
Confidence            46899999999 9999999999999999998886  67777776542                            23566


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.|++.      ..|+.+++ ++|+++....+     ...+++.+.++.+
T Consensus        83 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~~  120 (130)
T 1wmj_A           83 EKYNVE------AMPTFLFI-KDGAEADKVVG-----ARKDDLQNTIVKH  120 (130)
T ss_dssp             HHHTCC------SSCCCCBC-TTTTCCBCCCT-----TCTTTHHHHHHHH
T ss_pred             HHcCCC------ccceEEEE-eCCeEEEEEeC-----CCHHHHHHHHHHH
Confidence            788885      45776555 89998866532     2234455555444

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.64  E-value=1.2e-07  Score=76.84  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|||.|| ++||++|+...|.|.++.+++.+ .+.|+-|.+|.                            ..+++.
T Consensus        40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe----------------------------~~e~a~   89 (160)
T 2av4_A           40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE----------------------------VPDFNT   89 (160)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence            3579999999 99999999999999999999864 46777777653                            234566


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      .|+|.      ..|+.+++ ++|+.+.+
T Consensus        90 ~y~V~------siPT~~fF-k~G~~v~v  110 (160)
T 2av4_A           90 MYELY------DPVSVMFF-YRNKHMMI  110 (160)
T ss_dssp             TTTCC------SSEEEEEE-ETTEEEEE
T ss_pred             HcCCC------CCCEEEEE-ECCEEEEE
Confidence            78886      56888777 78988753

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.61  E-value=8.2e-08  Score=76.48  Aligned_cols=89  Identities=16%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             CCCeEEEEEEeCCC--CCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~--cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .+++|||+|| +.|  |++|+...|.|.++.++|.++.+.|+-|++|                            .+.++
T Consensus        33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD----------------------------e~~~l   83 (140)
T 2qgv_A           33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE----------------------------QSEAI   83 (140)
T ss_dssp             TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH----------------------------HHHHH
T ss_pred             CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC----------------------------CCHHH
Confidence            4567888888 777  9999999999999999987533666655443                            24578


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+|||.      ..|+.+++ +||+++.+..+.    ..-+++.+.++++
T Consensus        84 A~~ygV~------sIPTlilF-k~G~~v~~~~G~----~~k~~l~~~i~~~  123 (140)
T 2qgv_A           84 GDRFGAF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGL  123 (140)
T ss_dssp             HHHHTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             HHHcCCc------cCCEEEEE-ECCEEEEEEecC----CCHHHHHHHHHHH
Confidence            8899996      67999888 899999887442    2345566666544

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.60  E-value=8.4e-09  Score=83.61  Aligned_cols=99  Identities=10%  Similarity=0.040  Sum_probs=60.8

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      ..+.-.||+|+|+|| ++||++|....|.+.+.. ++.+ .+..++.|.+|..        ..       .         
T Consensus        38 ~~A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~-~~~~~~~~~fv~V~vD~e--------~~-------~---------   91 (151)
T 3ph9_A           38 FYAQKSKKPLMVIHH-LEDCQYSQALKKVFAQNE-EIQEMAQNKFIMLNLMHE--------TT-------D---------   91 (151)
T ss_dssp             HHHHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCH-HHHHHHHHTCEEEEESSC--------CS-------C---------
T ss_pred             HHHHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCH-HHHHHhhcCeEEEEecCC--------ch-------h---------
Confidence            333346899999999 999999999999887642 2211 1234566666521        00       0         


Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC------CCCCHHHHHHHHhhc
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP------VGRSVDETLRLVQAF  221 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~------~g~~~~evl~~l~~L  221 (299)
                         .+..|++.      ..|+++++|++|+++....+...      ...+..++++.++..
T Consensus        92 ---~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A           92 ---KNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             ---GGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred             ---hHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence               01234442      46899999999999887644311      112456666666543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.60  E-value=1.8e-07  Score=90.31  Aligned_cols=93  Identities=5%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .++++||+|| ++||++|+...|.+.++++++++  .++.++.|+++.                          |.+.++
T Consensus        29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~l   81 (519)
T 3t58_A           29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSAV   81 (519)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHHH
Confidence            3589999999 99999999999999999999986  368888887763                          224578


Q ss_pred             HHHhCCcccCCCCceeEEEEEeC---CCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDR---NGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~---dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.|+|.      ..|+++++++   +|+++....+    +.+.+++.+.+..+.
T Consensus        82 ~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g----~~~~~~L~~~l~~~l  126 (519)
T 3t58_A           82 CREFNIA------GFPTVRFFQAFTKNGSGATLPGA----GANVQTLRMRLIDAL  126 (519)
T ss_dssp             HHHTTCC------SBSEEEEECTTCCSCCCEEECCS----SCCHHHHHHHHHHHH
T ss_pred             HHHcCCc------ccCEEEEEcCcccCCCceeEecC----CCCHHHHHHHHHHHH
Confidence            8899996      5799999997   7876665432    246667766665543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.59  E-value=1.6e-07  Score=81.52  Aligned_cols=92  Identities=8%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .++++||+|| ++||++|....|.+.++++++++  .++.++.|+++.                          |.+.++
T Consensus        29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--------------------------~~~~~l   81 (244)
T 3q6o_A           29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE--------------------------ETNSAV   81 (244)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------TTTHHH
T ss_pred             CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------hhhHHH
Confidence            3589999999 99999999999999999999986  468888887643                          224578


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcE---EEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVL---RQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I---~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++.|++.      ..|+++++++.+++   ....    ..+.+.+++.+.+..+
T Consensus        82 ~~~~~v~------~~Pt~~~~~~g~~~~~g~~~~----~~g~~~~~l~~~i~~~  125 (244)
T 3q6o_A           82 CRDFNIP------GFPTVRFFXAFTXNGSGAVFP----VAGADVQTLRERLIDA  125 (244)
T ss_dssp             HHHTTCC------SSSEEEEECTTCCSSSCEECC----CTTCCHHHHHHHHHHH
T ss_pred             HHHcCCC------ccCEEEEEeCCCcCCCCeeEe----cCCCCHHHHHHHHHHH
Confidence            8899986      56999999863332   1111    1234667777666554

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.59  E-value=2.3e-07  Score=73.65  Aligned_cols=84  Identities=12%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CeEEEEEEeCCCC--CCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         95 KYLVFFFYPLDFT--FVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        95 k~vlL~F~~~~~c--p~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ++|||+|| +.||  ++|+...|.|.++.++|.+ .+.++-|++|                            .+.+++.
T Consensus        34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvD----------------------------e~~~la~   83 (137)
T 2qsi_A           34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAE----------------------------AERGLMA   83 (137)
T ss_dssp             SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGG----------------------------GHHHHHH
T ss_pred             CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECC----------------------------CCHHHHH
Confidence            48999999 8899  9999999999999999864 4666655543                            3457888


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      .|||.      ..|+.+++ +||+++.+..+..    .-+++.+.++
T Consensus        84 ~ygV~------siPTlilF-kdG~~v~~~vG~~----~k~~l~~~l~  119 (137)
T 2qsi_A           84 RFGVA------VCPSLAVV-QPERTLGVIAKIQ----DWSSYLAQIG  119 (137)
T ss_dssp             HHTCC------SSSEEEEE-ECCEEEEEEESCC----CHHHHHHHHH
T ss_pred             HcCCc------cCCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHH
Confidence            99996      67999999 8999999874432    2334444444

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.57  E-value=1.8e-07  Score=66.81  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCC
Q psy16151         97 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV  176 (299)
Q Consensus        97 vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv  176 (299)
                      +|++|| ++|||+|....|.+.++.+++.+ ++.++.|..|..                            .++++.||+
T Consensus         4 ~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~~~~v   53 (85)
T 1nho_A            4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD----------------------------REKAIEYGL   53 (85)
T ss_dssp             CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC----------------------------GGGGGGTCS
T ss_pred             EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHHhCCc
Confidence            577787 99999999999999999998874 688888877521                            245567887


Q ss_pred             cccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        177 YLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       177 ~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .      ..|++++   +|++  ...+.    .+.+++.+.++.+
T Consensus        54 ~------~~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~~   83 (85)
T 1nho_A           54 M------AVPAIAI---NGVV--RFVGA----PSREELFEAINDE   83 (85)
T ss_dssp             S------CSSEEEE---TTTE--EEECS----SCCHHHHHHHHHH
T ss_pred             e------eeCEEEE---CCEE--EEccC----CCHHHHHHHHHHH
Confidence            5      4688777   8998  33221    2445666666543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.93  E-value=1.1e-08  Score=76.16  Aligned_cols=73  Identities=18%  Similarity=0.334  Sum_probs=55.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+++|.|| +.|||.|....|.+.++.+++++ ++.++.|+.|.                            +.++++
T Consensus        18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~   67 (106)
T 2yj7_A           18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE----------------------------NPNTAA   67 (106)
Confidence            4678999998 99999999999999999888874 56666665532                            224556


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      .|++.      ..|+.+++ ++|+++..+.
T Consensus        68 ~~~v~------~~Pt~~~~-~~g~~~~~~~   90 (106)
T 2yj7_A           68 QYGIR------SIPTLLLF-KNGQVVDRLV   90 (106)
Confidence            77775      46898888 8999887653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.52  E-value=7.1e-07  Score=76.05  Aligned_cols=87  Identities=13%  Similarity=-0.001  Sum_probs=62.9

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh---cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~---~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ++.++|+|| ++||++|+...|.+.++++++++   .++.++.|..+.                            +.++
T Consensus       134 ~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l  184 (226)
T 1a8l_A          134 QDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE----------------------------YPEW  184 (226)
T ss_dssp             SCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------CHHH
T ss_pred             CCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc----------------------------CHHH
Confidence            344488898 99999999999999999999974   367777765531                            3457


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++.|++.      ..|+++++ ++|+++..+.+.    ...+++.+.++.
T Consensus       185 ~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~  223 (226)
T 1a8l_A          185 ADQYNVM------AVPKIVIQ-VNGEDRVEFEGA----YPEKMFLEKLLS  223 (226)
T ss_dssp             HHHTTCC------SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             HHhCCCc------ccCeEEEE-eCCceeEEEcCC----CCHHHHHHHHHH
Confidence            7889986      46886665 699988766332    245566666654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.52  E-value=2e-07  Score=66.58  Aligned_cols=81  Identities=16%  Similarity=0.281  Sum_probs=56.9

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  174 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~  174 (299)
                      .++|++|| ++|||+|....|.+.++.+++++ ++.++.|+.|..                            .++++.|
T Consensus         3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~~~   52 (85)
T 1fo5_A            3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMEN----------------------------PQKAMEY   52 (85)
T ss_dssp             CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSS----------------------------CCTTTST
T ss_pred             ceEEEEEe-CCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCC----------------------------HHHHHHC
Confidence            46788888 99999999999999999988873 688888887531                            1234567


Q ss_pred             CCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        175 GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       175 gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |+.      ..|++++   +|++  ...+    ..+.+++.+.++.
T Consensus        53 ~v~------~~Pt~~~---~G~~--~~~G----~~~~~~l~~~l~~   83 (85)
T 1fo5_A           53 GIM------AVPTIVI---NGDV--EFIG----APTKEALVEAIKK   83 (85)
T ss_dssp             TTC------CSSEEEE---TTEE--ECCS----SSSSHHHHHHHHH
T ss_pred             CCc------ccCEEEE---CCEE--eeec----CCCHHHHHHHHHH
Confidence            775      4578777   8988  3212    1245566666554

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.51  E-value=6.1e-07  Score=80.58  Aligned_cols=95  Identities=12%  Similarity=0.120  Sum_probs=69.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.+.++++++++ .+.++.|.+|..                          .+.++++
T Consensus        34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~--------------------------~~~~l~~   85 (298)
T 3ed3_A           34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLN--------------------------KNKALCA   85 (298)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTST--------------------------TTHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCc--------------------------cCHHHHH
Confidence            4678999999 99999999999999999999975 488888888732                          1457888


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEe-------------ccCCCCCCHHHHHHHHhhcc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM-------------NDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~-------------~~~~~g~~~~evl~~l~~L~  222 (299)
                      .|++.      ..|+.+++++ |+++....             ......+..+.+++.+....
T Consensus        86 ~~~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           86 KYDVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             HTTCC------BSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             hCCCC------ccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            99986      5689999975 55322111             11223467888888887654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.48  E-value=3.5e-07  Score=79.84  Aligned_cols=92  Identities=10%  Similarity=0.031  Sum_probs=66.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +|++|||+|| ++||++|....|.|.+++++|.  ++.++.|.++.        ..                     ++.
T Consensus       132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~--------~~---------------------l~~  179 (245)
T 1a0r_P          132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN--------TG---------------------AGD  179 (245)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH--------HC---------------------CTT
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc--------HH---------------------HHH
Confidence            4789999999 9999999999999999999986  48888886532        00                     123


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC-C--CCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV-G--RSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~-g--~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+++++ ++|+++..+.+.... +  ...+.+...|.....
T Consensus       180 ~~~I~------~~PTll~~-~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          180 RFSSD------VLPTLLVY-KGGELLSNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             SSCTT------TCSEEEEE-ETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             HCCCC------CCCEEEEE-ECCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence            46664      46888777 599999887654322 2  346677777776543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.44  E-value=3.2e-07  Score=73.35  Aligned_cols=86  Identities=19%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             CeEEEEEEeCCC--CCCchhhHHHHHHHHHHHhhcCcE--EEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         95 KYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTE--VVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        95 k~vlL~F~~~~~--cp~C~~~~~~l~~l~~~~~~~gv~--vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      +.+||+|| +.|  |++|....|.|.++++++ + ++.  ++.|++|.                            +.++
T Consensus        35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~----------------------------~~~l   83 (142)
T 2es7_A           35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ----------------------------SEAI   83 (142)
T ss_dssp             CSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH----------------------------HHHH
T ss_pred             CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC----------------------------CHHH
Confidence            35777776 665  999999999999999988 3 577  77775541                            2457


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.|+|.      ..|+++++ ++|+++.++.+.    .+.+++.+.++.+.
T Consensus        84 a~~~~V~------~iPT~~~f-k~G~~v~~~~G~----~~~~~l~~~i~~~l  124 (142)
T 2es7_A           84 GDRFNVR------RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSIV  124 (142)
T ss_dssp             HHTTTCC------SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHHH
T ss_pred             HHhcCCC------cCCeEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence            7889986      57999999 999998776432    24567777776653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.41  E-value=6.2e-07  Score=68.51  Aligned_cols=75  Identities=19%  Similarity=0.094  Sum_probs=58.3

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|+|+ ++||++|....|.|.++.++   .++.++-|.+|...                        |....++..
T Consensus        24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r------------------------~~Sn~IA~~   75 (112)
T 3iv4_A           24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQER------------------------DLSDYIAKK   75 (112)
T ss_dssp             CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGH------------------------HHHHHHHHH
T ss_pred             CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCc------------------------hhhHHHHHH
Confidence            678888888 99999999999999998873   36777777665321                        113568999


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                      |||..     ..|+.+|+ +||++++...
T Consensus        76 ~~V~h-----~sPq~il~-k~G~~v~~~S   98 (112)
T 3iv4_A           76 TNVKH-----ESPQAFYF-VNGEMVWNRD   98 (112)
T ss_dssp             HTCCC-----CSSEEEEE-ETTEEEEEEE
T ss_pred             hCCcc-----CCCeEEEE-ECCEEEEEee
Confidence            99962     26899999 8999998864

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.40  E-value=1.2e-06  Score=76.18  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh---cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ---INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~---~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      ++.|++++++|| +.|||+|+...|.+.+++.+++.   .++.+..|..+.                            +
T Consensus       135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~----------------------------~  185 (243)
T 2hls_A          135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE----------------------------N  185 (243)
T ss_dssp             HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT----------------------------C
T ss_pred             HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc----------------------------C
Confidence            467888888998 99999999999999999999852   466666665431                            2


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .++++.|++.      ..|++++   +|++++.  +    ....+++++.+....
T Consensus       186 ~~~~~~~~V~------~vPt~~i---~G~~~~~--G----~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          186 PDIADKYGVM------SVPSIAI---NGYLVFV--G----VPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHHTTCC------SSSEEEE---TTEEEEE--S----CCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCe------eeCeEEE---CCEEEEe--C----CCCHHHHHHHHHHHh
Confidence            3577788886      5688877   8987622  2    235677777776654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.40  E-value=2e-06  Score=60.24  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCC
Q psy16151         97 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV  176 (299)
Q Consensus        97 vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv  176 (299)
                      ..|.|| ++||++|....|.+.++.+++.. ++.++.|.                               +.++++.||+
T Consensus         2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------~~~~~~~~~v   48 (77)
T 1ilo_A            2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------EMDQILEAGL   48 (77)
T ss_dssp             EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------SHHHHHHHTC
T ss_pred             cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------CHHHHHHCCC
Confidence            357888 78999999999999999888763 45555442                               2356778888


Q ss_pred             cccCCCCceeEEEEEeCCCcEEEE
Q psy16151        177 YLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       177 ~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      .      ..|++++   +|+++..
T Consensus        49 ~------~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           49 T------ALPGLAV---DGELKIM   63 (77)
T ss_dssp             S------SSSCEEE---TTEEEEC
T ss_pred             C------cCCEEEE---CCEEEEc
Confidence            6      4678777   8988754

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.38  E-value=1.5e-08  Score=77.00  Aligned_cols=74  Identities=9%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee
Q psy16151         85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus        85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  164 (299)
                      ..++|+++.||.+||.|| ++|||+|....|.|.++.++++       .|.++..                 +.     .
T Consensus         3 ~~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~-----------------~~-----~   52 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-------YVECSPN-----------------GP-----G   52 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-------EEESCTT-----------------CT-----T
T ss_pred             HhhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-------EEEEecc-----------------cc-----c
Confidence            456788888999999999 9999999999999988875543       1222210                 00     0


Q ss_pred             cCchHHHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151        165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVL  197 (299)
Q Consensus       165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I  197 (299)
                      |.+.++++.|||.      ..|+.++   +|++
T Consensus        53 ~~~~~l~~~~~V~------~~PT~~i---~G~~   76 (106)
T 3kp8_A           53 TPQAQECTEAGIT------SYPTWII---NGRT   76 (106)
T ss_dssp             SCCCHHHHHTTCC------SSSEEEE---TTEE
T ss_pred             chhHHHHHHcCCe------EeCEEEE---CCEE
Confidence            2356889999996      5678555   7874

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.37  E-value=4.1e-06  Score=71.77  Aligned_cols=89  Identities=10%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .+++++|+|| +.||++|....|.+.++++++++++  +.++.|..+.                            +.++
T Consensus       146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  196 (241)
T 3idv_A          146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA----------------------------ETDL  196 (241)
T ss_dssp             HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT----------------------------CHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------CHHH
Confidence            4678999998 9999999999999999999998644  6666665542                            3457


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      ++.|++.      ..|+.++++ +|+.+. +    ......+++++.+....
T Consensus       197 ~~~~~v~------~~Pt~~~~~-~g~~~~-~----~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          197 AKRFDVS------GYPTLKIFR-KGRPYD-Y----NGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             HHHTTCC------SSSEEEEEE-TTEEEE-C----CSCCSHHHHHHHHHHHT
T ss_pred             HHHcCCc------ccCEEEEEE-CCeEEE-e----cCCCCHHHHHHHHHhhh
Confidence            8889986      468888886 687654 2    22456788888887654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.30  E-value=5.9e-07  Score=85.57  Aligned_cols=91  Identities=14%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      .||+|+|+|| ++||++|+...|.+.++++++++. ++.++.|..+..                             +++
T Consensus       369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----------------------------~~~  418 (481)
T 3f8u_A          369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----------------------------DVP  418 (481)
T ss_dssp             TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----------------------------CCC
T ss_pred             CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----------------------------hhH
Confidence            4889999999 999999999999999999999864 566666655431                             122


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +.|++.      ..|+.+++++.|++ ...+ .   ..+..+++++.++....
T Consensus       419 ~~~~v~------~~Pt~~~~~~~~~~~~~~~-~---G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          419 SPYEVR------GFPTIYFSPANKKLNPKKY-E---GGRELSDFISYLQREAT  461 (481)
T ss_dssp             TTCCCC------SSSEEEEECTTCTTSCEEC-C---SCCSHHHHHHHHHHHCS
T ss_pred             hhCCCc------ccCEEEEEeCCCeEeeeEe-C---CCCCHHHHHHHHHHhcC
Confidence            356664      46899999888874 3332 1   23568888888877643

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.29  E-value=3.1e-06  Score=65.40  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++|||+|| +.||++|+...|.|.++.+++.  ++.++-|.+|..                               +..
T Consensus        23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~-------------------------------~~~   68 (118)
T 3evi_A           23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC-------------------------------IQH   68 (118)
T ss_dssp             TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT-------------------------------STT
T ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------HHH
Confidence            458999999 9999999999999999999886  578887766521                               124


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC---CCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV---GRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~---g~~~~evl~~l~~  220 (299)
                      |++.      ..|+.+++ ++|+.+....+....   ....+++...|..
T Consensus        69 ~~v~------~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           69 YHDN------CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             CCGG------GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             CCCC------CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            5664      56888888 799999988754432   2355666666654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.26  E-value=4.2e-06  Score=77.51  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-----cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-----INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT  167 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-----~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~  167 (299)
                      .+++++|.|| +.||++|....|.+.++++++++     .++.++.|..+                            .+
T Consensus        21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~----------------------------~~   71 (382)
T 2r2j_A           21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD----------------------------QH   71 (382)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT----------------------------TC
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC----------------------------cc
Confidence            4689999998 99999999999999999999963     23666666543                            23


Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .++++.|+|.      ..|+.+++ ++|+++.+.+.+   .+..+.+.+.+.....
T Consensus        72 ~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G---~~~~~~l~~~i~~~~~  117 (382)
T 2r2j_A           72 SDIAQRYRIS------KYPTLKLF-RNGMMMKREYRG---QRSVKALADYIRQQKS  117 (382)
T ss_dssp             HHHHHHTTCC------EESEEEEE-ETTEEEEEECCS---CCSHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCC------cCCEEEEE-eCCcEeeeeecC---cchHHHHHHHHHHhcc
Confidence            5788889986      56887776 689987653222   3467777777766543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.24  E-value=1.9e-06  Score=73.77  Aligned_cols=90  Identities=10%  Similarity=0.058  Sum_probs=63.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      +|++|||+|| +.||++|....|.|.+++++|.  ++.++.|.++ .       .                     .++.
T Consensus       119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~-------~---------------------~l~~  166 (217)
T 2trc_P          119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-N-------T---------------------GAGD  166 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-H-------H---------------------TCST
T ss_pred             CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-c-------H---------------------HHHH
Confidence            4689999999 9999999999999999998884  6888887654 1       0                     1223


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC---CCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV---GRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~---g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+++..+.+....   ....+++.+.|...
T Consensus       167 ~~~i~------~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          167 RFSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             TSCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             HCCCC------CCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            45664      46898888 599998877543321   22346666666654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.23  E-value=7.2e-06  Score=74.91  Aligned_cols=89  Identities=7%  Similarity=0.057  Sum_probs=65.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHH-------HHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILA-------FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~-------l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      .+++++|.|| ++||+ |....|.       +.++++++++.++.+..|..+.                           
T Consensus        27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~---------------------------   77 (350)
T 1sji_A           27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK---------------------------   77 (350)
T ss_dssp             TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------------
T ss_pred             hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------------
Confidence            4689999999 99999 9888888       7888888876677777776542                           


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                       +.++++.|||.      ..|+.+++ ++|++. .+ .   ..+..+.+.+.+.....
T Consensus        78 -~~~l~~~~~v~------~~Pt~~~~-~~g~~~-~~-~---G~~~~~~l~~~i~~~~~  122 (350)
T 1sji_A           78 -EAKLAKKLGFD------EEGSLYVL-KGDRTI-EF-D---GEFAADVLVEFLLDLIE  122 (350)
T ss_dssp             -THHHHHHHTCC------STTEEEEE-ETTEEE-EE-C---SCCCHHHHHHHHHTTSS
T ss_pred             -CHHHHHhcCCC------ccceEEEE-ECCcEE-Ee-c---CCCCHHHHHHHHHHhcC
Confidence             24678889986      46899888 788843 33 1   23567788887776543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.21  E-value=9.6e-06  Score=65.58  Aligned_cols=91  Identities=15%  Similarity=0.029  Sum_probs=59.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .||+|+|+|+ +.||+.|...-...   .++.+.++ .++.++-+.+|+++                          ...
T Consensus        41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~--------------------------~~~   92 (153)
T 2dlx_A           41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEE--------------------------GQR   92 (153)
T ss_dssp             HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHH--------------------------HHH
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHh--------------------------HHH
Confidence            4899999999 99999997654332   22223332 25666666655421                          134


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +.+.|++.      ..|+++++|++ |+.+... .    +.+.+++++.|+.+.
T Consensus        93 l~~~y~v~------~~P~~~fld~~~G~~l~~~-~----g~~~~~fl~~L~~~l  135 (153)
T 2dlx_A           93 YIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSSFLDQVTGFL  135 (153)
T ss_dssp             HHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHHHHHHHHHHH
T ss_pred             HHHHcCCC------CCCEEEEEeCCCCcEeeec-C----CCCHHHHHHHHHHHH
Confidence            55678875      46899999999 8766554 2    257788887776553

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.18  E-value=5.9e-06  Score=79.13  Aligned_cols=91  Identities=9%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|.|| +.||++|....|.+.++.+++++.++.++.|..+.                            +..+++
T Consensus        30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~----------------------------~~~l~~   80 (504)
T 2b5e_A           30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCM   80 (504)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------CHHHHH
Confidence            4789999998 99999999999999999999987678888886542                            245788


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcE--EEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVL--RQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I--~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .||+.      ..|+.+++. +|++  ...+.    ..+..+.+.+.+.....
T Consensus        81 ~~~v~------~~Pt~~~~~-~g~~~~~~~~~----G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           81 EHNIP------GFPSLKIFK-NSDVNNSIDYE----GPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             HTTCC------SSSEEEEEE-TTCTTCEEECC----SCCSHHHHHHHHHHHTS
T ss_pred             hcCCC------cCCEEEEEe-CCccccceeec----CCCCHHHHHHHHHHhcC
Confidence            89986      468988885 6775  44431    23567888888776543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.14  E-value=5.6e-06  Score=67.70  Aligned_cols=48  Identities=13%  Similarity=0.064  Sum_probs=37.7

Q ss_pred             CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         84 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        84 G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      +..+.+.+-.++++|+.|| ..|||+|....|.|.++.+++.+  +.++.+
T Consensus        12 ~~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~   59 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYR   59 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEE
T ss_pred             CCCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEE
Confidence            3445666677888899888 99999999999999999888764  454444

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.10  E-value=1.2e-05  Score=76.52  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .|++++|.|| +.||++|....|.+.++++++++. +.++.|..+.                            +..+++
T Consensus        20 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------~~~l~~   69 (481)
T 3f8u_A           20 SAGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------NTNTCN   69 (481)
T ss_dssp             SSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------CHHHHH
Confidence            3478999998 999999999999999999999864 6677666542                            346788


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .||+.      ..|+.+++ ++|+++..+.    ..+..+.+.+.+.....
T Consensus        70 ~~~v~------~~Ptl~~~-~~g~~~~~~~----G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           70 KYGVS------GYPTLKIF-RDGEEAGAYD----GPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             HTTCC------EESEEEEE-ETTEEEEECC----SCSSHHHHHHHHHHHTS
T ss_pred             hcCCC------CCCEEEEE-eCCceeeeec----CccCHHHHHHHHHhhcc
Confidence            89986      56877777 7897765542    23567888888876643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.10  E-value=8.8e-06  Score=82.11  Aligned_cols=93  Identities=6%  Similarity=0.100  Sum_probs=68.8

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      +.++.|++++|.|| ++||++|...+|.|.++++++++ ++.++.|..+..                            .
T Consensus       450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~  499 (780)
T 3apo_A          450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIH----------------------------E  499 (780)
T ss_dssp             SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC----------------------------H
T ss_pred             HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCC----------------------------H
Confidence            44557899999999 99999999999999999999975 588888876531                            2


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .+++.||+.      ..|++++++ +|++ +.+. +   ....+++.+.+..+..
T Consensus       500 ~~~~~~~v~------~~Pt~~~~~-~g~~-~~~~-g---~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          500 GLCNMYNIQ------AYPTTVVFN-QSSI-HEYE-G---HHSAEQILEFIEDLRN  542 (780)
T ss_dssp             HHHHHTTCC------SSSEEEEEE-TTEE-EEEC-S---CSCHHHHHHHHHHHHS
T ss_pred             HHHHHcCCC------cCCeEEEEc-CCce-eeec-C---cccHHHHHHHHHhhcc
Confidence            377788885      468999994 6876 4432 2   2356677776666543

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.10  E-value=3.8e-06  Score=79.69  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-C------cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N------TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-g------v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      .+|++||+|| ++||++|+...|.+.++++++++. +      +.++.|.+|.                           
T Consensus        41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---------------------------   92 (470)
T 3qcp_A           41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---------------------------   92 (470)
T ss_dssp             GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------------------------
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------------------------
Confidence            4578999999 999999999999999999998743 2      6777776542                           


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGV  196 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~  196 (299)
                       +.++++.|+|.      ..|+++++++.|.
T Consensus        93 -~~~la~~y~V~------~~PTlilf~~gg~  116 (470)
T 3qcp_A           93 -EVDLCRKYDIN------FVPRLFFFYPRDS  116 (470)
T ss_dssp             -CHHHHHHTTCC------SSCEEEEEEESSC
T ss_pred             -CHHHHHHcCCC------ccCeEEEEECCCc
Confidence             24677888886      5689999976654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.08  E-value=1.7e-05  Score=67.67  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      ++.++++|| +.||++|+...|.+.++..++.  ++.++.|..+.                            +.++++.
T Consensus       136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~----------------------------~~~l~~~  184 (229)
T 2ywm_A          136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDASE----------------------------NQDLAEQ  184 (229)
T ss_dssp             SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG----------------------------CHHHHHH
T ss_pred             CCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC----------------------------CHHHHHH
Confidence            444577888 9999999999999999998873  67777775431                            3457788


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |++.      ..|++++   +|++ ..+.+    ....+++.+.+..+
T Consensus       185 ~~v~------~~Pt~~~---~G~~-~~~~G----~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          185 FQVV------GVPKIVI---NKGV-AEFVG----AQPENAFLGYIMAV  218 (229)
T ss_dssp             TTCC------SSSEEEE---GGGT-EEEES----CCCHHHHHHHHHHH
T ss_pred             cCCc------ccCEEEE---CCEE-EEeeC----CCCHHHHHHHHHHH
Confidence            9986      4688777   7885 33322    23455666665543

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*

Probab=98.06  E-value=3.2e-07  Score=78.73  Aligned_cols=62  Identities=35%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEEEccccccc
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKF  285 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~~~~~~~~~  285 (299)
                      ..+|++||+|    +...+|+|++|+++++.|...+|.|+.+|.+.+|||+.+.|||+.++....+
T Consensus       148 ~v~Gd~VN~AaRle~~a~~g~I~vS~~~~~~l~~~~~~~~~~g~~~lKG~~~~~~~~~~~~~~~~~  213 (220)
T 1ab8_A          148 DIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSL  213 (220)
T ss_dssp             EEESHHHHHHHHHHHTCCTTCEEECHHHHHHHHHHTCCCCC---------------CCC-------
T ss_pred             EEECcHHHHHHHHHhcCCCCeEEECHHHHHHhhcCceEEEEeccEEecCCCceEEEEEecccCCCC
Confidence            3348888888    5777899999999999998877999999999999999999999988766543

>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*

Probab=98.03  E-value=8e-07  Score=83.05  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhc----CceEEecceeeeccc-ceeEEEEEEcccc
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDH----GVTCELRGRTFIKGK-GLITTYFIRQQEI  282 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~----~~~~~~rg~~~~k~~-~~~~t~~~~~~~~  282 (299)
                      ..+|++||+|    +++.+|+|++|++|++.|...    +|.|+.+|.+.+||| |.+.||||.+...
T Consensus       312 dv~GdtVN~AsRLes~a~~g~I~vS~~t~~~l~~~~~~~~f~~~~~G~v~lKGk~~~v~~y~l~~~~~  379 (407)
T 1y10_A          312 DWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDVRLFRVRRGAT  379 (407)
T ss_dssp             EEEEHHHHHHHHHHHHCCTTCEEEEHHHHHSCCCC---CCCEEEEEEEECCTTCCSCEEEEEEEC---
T ss_pred             ccCCCHHHHHHHHHhcCCCCeEEECHHHHHHHhcccccCceEEEEeceEEeCCCCCceEEEEEcccCC
Confidence            3579999999    788999999999999999884    799999999999998 9999999987644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.02  E-value=5.7e-06  Score=83.47  Aligned_cols=93  Identities=8%  Similarity=-0.009  Sum_probs=69.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .|+++||+|| ++||++|+...|.+.++++++++ ++.++.|..+.                            ...+++
T Consensus       674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~----------------------------~~~~~~  723 (780)
T 3apo_A          674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQ  723 (780)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC----------------------------CHHHHH
Confidence            4689999999 99999999999999999999975 67888776642                            235677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .||+.      ..|+++++ ++|+++....+......+.+++.+.+..+.
T Consensus       724 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l  766 (780)
T 3apo_A          724 KAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL  766 (780)
T ss_dssp             HTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             hcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence            88885      56899888 788876544321101346778888777664

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.01  E-value=1.1e-05  Score=73.70  Aligned_cols=88  Identities=11%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      .+|+++|.|| +.||++|+...|.+.++++++++. ++.++.|..+..                 .             +
T Consensus       266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~-----------------~-------------~  314 (361)
T 3uem_A          266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN-----------------E-------------V  314 (361)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTC-----------------B-------------C
T ss_pred             CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCcc-----------------c-------------h
Confidence            5789999999 999999999999999999999864 355554433221                 0             2


Q ss_pred             HHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.|++.      ..|+.++++++ |+....+.    ..+..+++.+.++..
T Consensus       315 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~----G~~~~~~l~~~l~~~  355 (361)
T 3uem_A          315 EAVKVH------SFPTLKFFPASADRTVIDYN----GERTLDGFKKFLESG  355 (361)
T ss_dssp             SSCCCC------SSSEEEEECSSSSCCCEECC----SCSSHHHHHHHHTTT
T ss_pred             hhcCCc------ccCeEEEEECCCCcceeEec----CCCCHHHHHHHHHhc
Confidence            245664      46899999665 55544442    245778888888754

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B

Probab=98.01  E-value=8.2e-07  Score=74.19  Aligned_cols=56  Identities=25%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhc-CceEEecceeeecccceeEEEEEEccc
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDH-GVTCELRGRTFIKGKGLITTYFIRQQE  281 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~-~~~~~~rg~~~~k~~~~~~t~~~~~~~  281 (299)
                      .|++||.|    +...+|+|++|+++++.|... .|.++.+|++.+||||.+.||||...+
T Consensus       128 ~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~l~~~~  188 (190)
T 3et6_A          128 FGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLLSPLE  188 (190)
T ss_dssp             ESHHHHHHHHHHHTSCTTSEEEEHHHHHHCSCGGGTCCCCEEEECCSSSSCEEEEEECCC-
T ss_pred             cCcchhHHHHHHhcCCCCeEEECHHHHHHhCcCCceEEEEcCCEEecCCCeEEEEEEeccc
Confidence            47778877    566789999999999999753 599999999999999999999998754

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.94  E-value=2.1e-05  Score=65.57  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+.++
T Consensus        24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            5788999998 99999999999999999988876 6888887765

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.92  E-value=1.4e-05  Score=68.04  Aligned_cols=45  Identities=13%  Similarity=-0.042  Sum_probs=35.5

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      +.+.+..||++|+.|| ..|||+|....+.|.++.+    .++.|+.+..
T Consensus        79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~  123 (216)
T 1eej_A           79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAF  123 (216)
T ss_dssp             EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            4455557889999999 9999999999999988754    3788776643

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.84  E-value=9.1e-06  Score=62.55  Aligned_cols=90  Identities=8%  Similarity=-0.030  Sum_probs=53.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      +...+||+|| +.||++|...-+.+...++... .+.+.++-|.++...                          ...++
T Consensus        17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~--------------------------~~~la   69 (116)
T 3dml_A           17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPL--------------------------PPGLE   69 (116)
T ss_dssp             --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCC--------------------------CTTCB
T ss_pred             cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCC--------------------------chhHH
Confidence            4457999999 9999999877654443322111 112455555554320                          12333


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ..|+|.      ..|+.++++ +|+.+.+..+..    ..+++.+.|+.
T Consensus        70 ~~~~V~------g~PT~i~f~-~G~ev~Ri~G~~----~~~~f~~~L~~  107 (116)
T 3dml_A           70 LARPVT------FTPTFVLMA-GDVESGRLEGYP----GEDFFWPMLAR  107 (116)
T ss_dssp             CSSCCC------SSSEEEEEE-TTEEEEEEECCC----CHHHHHHHHHH
T ss_pred             HHCCCC------CCCEEEEEE-CCEEEeeecCCC----CHHHHHHHHHH
Confidence            456664      468999998 999998874432    34555555544

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.84  E-value=9.9e-05  Score=61.05  Aligned_cols=95  Identities=6%  Similarity=0.023  Sum_probs=60.8

Q ss_pred             CCCeEEEEEEeC------CCCCCchhhHHHHHHHHHHHhhc----CcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151         93 YGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQI----NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  162 (299)
Q Consensus        93 ~Gk~vlL~F~~~------~~cp~C~~~~~~l~~l~~~~~~~----gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  162 (299)
                      ++.+|||+||..      .||++|+...|.+.++.+++...    .+.+.-|.+                          
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~--------------------------   89 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDV--------------------------   89 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------------------------
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEEC--------------------------
Confidence            456899999941      59999999999999999998631    233333322                          


Q ss_pred             eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEE---------EEEeccCC--CCCCHHHHHHHHhhc
Q psy16151        163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLR---------QITMNDLP--VGRSVDETLRLVQAF  221 (299)
Q Consensus       163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~---------~~~~~~~~--~g~~~~evl~~l~~L  221 (299)
                        |.+.+++.+|||.      ..|+.+++-+.+...         ....+...  .++..+.+.+.|...
T Consensus        90 --d~~~~la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~  151 (178)
T 3ga4_A           90 --NEVPQLVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI  151 (178)
T ss_dssp             --TTCHHHHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred             --ccCHHHHHHcCCC------CCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence              3356788889986      578888884433222         00111111  356777777777543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.77  E-value=1.4e-05  Score=76.44  Aligned_cols=90  Identities=8%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      .+|++||+|| ++||++|....|.+.++.++++..  ++.++.|..+..                 .            +
T Consensus       375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-----------------~------------~  424 (504)
T 2b5e_A          375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN-----------------D------------V  424 (504)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC-----------------C------------C
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc-----------------c------------c
Confidence            4789999999 999999999999999999999733  455554443210                 0            0


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .. |++.      ..|+.+++ ++|+......  ....+..+++.+.+....
T Consensus       425 ~~-~~v~------~~Pt~~~~-~~G~~~~~~~--~~G~~~~~~l~~~i~~~~  466 (504)
T 2b5e_A          425 RG-VVIE------GYPTIVLY-PGGKKSESVV--YQGSRSLDSLFDFIKENG  466 (504)
T ss_dssp             SS-CCCS------SSSEEEEE-CCTTSCCCCB--CCSCCCHHHHHHHHHHHC
T ss_pred             cc-CCce------ecCeEEEE-eCCceecceE--ecCCCCHHHHHHHHHhcC
Confidence            11 4554      46888888 7887622111  112357788888887763

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}

Probab=97.77  E-value=3.1e-06  Score=71.66  Aligned_cols=60  Identities=25%  Similarity=0.396  Sum_probs=52.2

Q ss_pred             CCCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEEEccccc
Q psy16151        223 DPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIE  283 (299)
Q Consensus       223 ~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~~~~~~~  283 (299)
                      ....|++||.|    +...+|+|++|+++++.|.+ .|.|+.+|.+.+|||+.+.||||.+....
T Consensus       125 ~~v~G~~Vn~AaRle~~a~~g~I~vs~~~~~~l~~-~~~~~~~g~~~lkG~~~~~~y~l~~~~~~  188 (204)
T 1yk9_A          125 YCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYLIGRKVA  188 (204)
T ss_dssp             CCEEEHHHHHTTHHHHSCSTTCEEBCHHHHHCCTT-CEEEEECCCCCCSSSSSCCCCEEEEEECC
T ss_pred             EEEEChHHHHHHHHHhcCCCCeEEECHHHHHHhhc-CeeEEEcceEEecCCCccEEEEEEeccCC
Confidence            44458999999    56678999999999999986 69999999999999999999999986553

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.69  E-value=9e-05  Score=61.44  Aligned_cols=42  Identities=14%  Similarity=0.005  Sum_probs=35.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .++++|+.|| ..|||+|....|.|.++.+++.+ ++.+.-+.+
T Consensus        24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            6788888888 99999999999999999888876 677665654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.63  E-value=0.00033  Score=64.37  Aligned_cols=89  Identities=6%  Similarity=-0.002  Sum_probs=61.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhH------HHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEI------LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL  166 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~------~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~  166 (299)
                      .++++||.|| +.||++|...-      |.+.++.+.++..++.+..|.++.                            
T Consensus        29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~----------------------------   79 (367)
T 3us3_A           29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK----------------------------   79 (367)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT----------------------------
T ss_pred             hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc----------------------------
Confidence            3578999998 99999874322      567777777776567776665542                            


Q ss_pred             chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +.++++.|||.      ..|+.+++. +|+++ .+    ...+..+.+++.+....
T Consensus        80 ~~~l~~~~~V~------~~PTl~~f~-~G~~~-~y----~G~~~~~~i~~~i~~~~  123 (367)
T 3us3_A           80 DAAVAKKLGLT------EEDSIYVFK-EDEVI-EY----DGEFSADTLVEFLLDVL  123 (367)
T ss_dssp             THHHHHHHTCC------STTEEEEEE-TTEEE-EC----CSCCSHHHHHHHHHHHH
T ss_pred             cHHHHHHcCCC------cCceEEEEE-CCcEE-Ee----CCCCCHHHHHHHHHHhc
Confidence            34688889986      568998885 78764 22    23456778888776654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.63  E-value=0.00021  Score=60.47  Aligned_cols=69  Identities=10%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             cCCCeEEEEEEeCC-CCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         92 YYGKYLVFFFYPLD-FTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        92 ~~Gk~vlL~F~~~~-~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ..++.+|++|| +. ||++|....|.+.++.+.  ..++.++.|..|.++                          +.++
T Consensus        20 ~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~--------------------------~~~~   70 (226)
T 1a8l_A           20 MVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPE--------------------------GKEL   70 (226)
T ss_dssp             CCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHH--------------------------HHHH
T ss_pred             cCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCcc--------------------------cHHH
Confidence            34555667776 88 999999999999987643  235777766665421                          2456


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGV  196 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~  196 (299)
                      ++.||+.      ..|+.+++ ++|+
T Consensus        71 ~~~~~v~------~~Pt~~~~-~~g~   89 (226)
T 1a8l_A           71 AKRYRID------RAPATTIT-QDGK   89 (226)
T ss_dssp             HHHTTCC------SSSEEEEE-ETTB
T ss_pred             HHHcCCC------cCceEEEE-cCCc
Confidence            7788886      46888777 5664

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.55  E-value=0.00026  Score=58.64  Aligned_cols=42  Identities=17%  Similarity=0.107  Sum_probs=35.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .++++|+.|| ..|||+|....+.|.++.+++.. ++.+..+.+
T Consensus        21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            5678888888 89999999999999999988864 677777765

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.54  E-value=0.00046  Score=59.68  Aligned_cols=123  Identities=11%  Similarity=0.037  Sum_probs=68.1

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC---C--HH-hHHHH--------hhcccc
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD---S--HF-THLAW--------VNTPRK  151 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d---~--~~-~~~~~--------~~~~~~  151 (299)
                      .+.+..-.++.+|+.|+ ..|||+|....+.+.++.++   .++.|+.+.+.   +  .. ....|        .+.+..
T Consensus        89 ~i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~  164 (241)
T 1v58_A           89 WLLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA  164 (241)
T ss_dssp             CEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred             CceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence            34555556788888888 99999999999998876553   25776655431   1  11 11111        111111


Q ss_pred             cCCCCccc--------eeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        152 EGGLGKLK--------IPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       152 ~~~~~~~~--------~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .+...++.        .....+.+.++++.+|+.      ..|++++.|.+|++. +..+    ..+.+++.+.++....
T Consensus       165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~------gtPt~vi~~~~G~~~-~~~G----~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQ-QAVG----LPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEE-EEES----SCCHHHHHHHTTC---
T ss_pred             HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEE-EecC----CCCHHHHHHHHHHHHH
Confidence            11000111        000112346788899986      458999998899762 3212    1356777777766543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.49  E-value=8.3e-05  Score=56.20  Aligned_cols=27  Identities=11%  Similarity=0.029  Sum_probs=21.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRL  121 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~  121 (299)
                      .++++++ || ++|||+|....+.|.++.
T Consensus        18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~   44 (116)
T 2e7p_A           18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVG   44 (116)
T ss_dssp             TSSSEEE-EE-CTTCHHHHHHHHHHHHHT
T ss_pred             cCCCEEE-EE-CCCChhHHHHHHHHHHcC
Confidence            4566666 87 999999999999888763

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.43  E-value=0.00027  Score=59.83  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-----CH---HhHHH---------HhhcccccCCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-----SH---FTHLA---------WVNTPRKEGGL  155 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-----~~---~~~~~---------~~~~~~~~~~~  155 (299)
                      .++++|+.|| ..|||+|....+.|.++.+    .++.|..+...     +.   .....         |.+.+...   
T Consensus        85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~---  156 (211)
T 1t3b_A           85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGN---  156 (211)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTC---
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCC---
Confidence            4678888998 9999999999999888533    36777655321     11   11112         22111100   


Q ss_pred             Cccce---eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        156 GKLKI---PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       156 ~~~~~---p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       .++.   ....+.+.++++.||+.      ..|++++  .||+.+    .   ...+.+++.+.++..
T Consensus       157 -~~~~~~~~~~v~~~~~l~~~~gV~------gTPt~vi--~nG~~~----~---G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          157 -LPKEVKTPNIVKKHYELGIQFGVR------GTPSIVT--STGELI----G---GYLKPADLLRALEET  209 (211)
T ss_dssp             -CCSSCCCSSHHHHHHHHHHHHTCC------SSCEEEC--TTSCCC----C---SCCCHHHHHHHHHHC
T ss_pred             -CCChHHHHHHHHHHHHHHHHcCCC------cCCEEEE--eCCEEe----c---CCCCHHHHHHHHHhc
Confidence             1111   11123346788999996      3577666  578621    1   123567777777654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.39  E-value=0.00066  Score=55.98  Aligned_cols=42  Identities=10%  Similarity=-0.058  Sum_probs=33.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .++.+|+.|| ..+||+|....+.+.++.+++.. ++.+..+.+
T Consensus        24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            5677788877 89999999999999999888764 577766654

>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}

Probab=97.29  E-value=8.1e-05  Score=61.91  Aligned_cols=60  Identities=15%  Similarity=0.066  Sum_probs=50.6

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhc-CceEEecceeeecccce-eEEEEEEccccc
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDH-GVTCELRGRTFIKGKGL-ITTYFIRQQEIE  283 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~-~~~~~~rg~~~~k~~~~-~~t~~~~~~~~~  283 (299)
                      ...|++||.|    +...+|.|.+|+++++.|... .|.++.+|.+.+||++. +.+|++......
T Consensus       111 ~~~G~~Vn~AaRl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~lkG~~~~v~vy~~~~~~~~  176 (189)
T 3mr7_A          111 DIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDADR  176 (189)
T ss_dssp             CEESHHHHHHHHHHHHSCTTCEEEEHHHHHHHTTTCCSCCEEEEEEEETTEEEEEEEEEECCCC--
T ss_pred             eEEChHHHHHHHHHhhCCCCeEEECHHHHHhhccccCceEEECCCEEeCCcCCcEEEEEEcccccc
Confidence            4469999999    677889999999999999875 59999999999999987 889999876553

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.26  E-value=0.0027  Score=51.44  Aligned_cols=50  Identities=8%  Similarity=-0.007  Sum_probs=38.4

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeC
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASV  136 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~  136 (299)
                      .+.+.+-.++.+|+.|+ ..+||+|....+.+.++.+++.+. ++.++....
T Consensus        19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            45566667787787777 889999999999999998888432 477776654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.24  E-value=0.001  Score=46.82  Aligned_cols=66  Identities=18%  Similarity=0.204  Sum_probs=43.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCc
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY  177 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~  177 (299)
                      +..|| +.|||+|....+.+.++.++   .++.+..+.+|..                         ..+.++++.||+.
T Consensus         4 ~~~f~-~~~C~~C~~~~~~l~~~~~~---~~~~~~~~~v~~~-------------------------~~~~~~~~~~gv~   54 (80)
T 2k8s_A            4 KAIFY-HAGCPVCVSAEQAVANAIDP---SKYTVEIVHLGTD-------------------------KARIAEAEKAGVK   54 (80)
T ss_dssp             EEEEE-ECSCHHHHHHHHHHHHHSCT---TTEEEEEEETTTC-------------------------SSTHHHHHHHTCC
T ss_pred             eEEEe-CCCCCchHHHHHHHHHHHHh---cCCeEEEEEecCC-------------------------hhhHHHHHHcCCC
Confidence            45566 89999999999988876433   3455555555421                         0124566778875


Q ss_pred             ccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        178 LSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       178 ~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                            ..|+.++   +|+++...
T Consensus        55 ------~vPt~~i---~g~~~~~G   69 (80)
T 2k8s_A           55 ------SVPALVI---DGAAFHIN   69 (80)
T ss_dssp             ------EEEEEEE---TTEEEEEE
T ss_pred             ------cCCEEEE---CCEEEEec
Confidence                  5687665   78877543

>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A

Probab=97.21  E-value=0.0001  Score=63.48  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=53.6

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhh---cCceEEecceeeecccc-eeEEEEEEccccccccccC
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILED---HGVTCELRGRTFIKGKG-LITTYFIRQQEIEKFQKIN  289 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~---~~~~~~~rg~~~~k~~~-~~~t~~~~~~~~~~~~~~~  289 (299)
                      ...|++||.|    +...+|+|++|+++++.|..   ..|.++.+|.+.+||++ .+.+|.|....+..|....
T Consensus       155 ~v~Gd~VN~AaRle~~a~~g~IlvS~~~~~~l~~~~~~~~~~~~~g~~~lkG~~~~v~vy~l~~~~~~~~~~~~  228 (235)
T 1fx2_A          155 DYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNTVPSRNFAALR  228 (235)
T ss_dssp             EEESHHHHHHHHHHHTCCTTCEEEEHHHHHTSCHHHHHTCCEEEEEEECCTTCSSCEEEEEECCSTTCCCCSCC
T ss_pred             EEECHHHHHHHHHHhhcCCCEEEECHHHHHHHhhhcccCceeEecccEEecccCCceEEEEEeccCCCcCcccc
Confidence            3459999999    56779999999999999954   46999999999999998 5788888776665555443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.12  E-value=0.0025  Score=61.24  Aligned_cols=42  Identities=17%  Similarity=0.087  Sum_probs=32.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++..+.+|| +.|||+|+...|.|.++..++.  ++.+.-|.+|
T Consensus       116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~  157 (521)
T 1hyu_A          116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG  157 (521)
T ss_dssp             CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT
T ss_pred             CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech
Confidence            3566677777 9999999999999999877764  5666666554

>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*

Probab=97.09  E-value=0.00015  Score=60.11  Aligned_cols=58  Identities=17%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeeccc-ceeEEEEEEccc
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGK-GLITTYFIRQQE  281 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~-~~~~t~~~~~~~  281 (299)
                      ...|++||.|    +...+|+|.+|+++++.|....|.++.+|.+.+||+ +.+.+|.|.+..
T Consensus       117 ~~~G~~Vn~AaRl~~~a~~g~IlvS~~~~~~l~~~~~~~~~~g~~~lkG~~~~~~vy~l~~~~  179 (184)
T 1ybt_A          117 DVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVLMRDD  179 (184)
T ss_dssp             EEESHHHHHHHHHHHHSCTTCEEEEHHHHHHTTTSSCCEEEEEEECCTTSSSCEEEEEECCCC
T ss_pred             eEECcHHHHHHHHHhcCCCCEEEECHHHHHhhcccCceEEEcCCEEecCCCCcEEEEEEecCC
Confidence            3458888888    567789999999999999766799999999999997 478899888754

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B

Probab=97.04  E-value=0.00022  Score=60.91  Aligned_cols=57  Identities=25%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CCCCccccc----cceeccceechHHHHHHHh-----hcCceEEecceeeecccceeEEEEEEccc
Q psy16151        225 LRTGAINGL----SLLVIGLFQVTEKTCDILE-----DHGVTCELRGRTFIKGKGLITTYFIRQQE  281 (299)
Q Consensus       225 ~~g~~vn~a----st~~~~~i~~s~~~~~~L~-----~~~~~~~~rg~~~~k~~~~~~t~~~~~~~  281 (299)
                      ..|++||.|    +...+|+|.+|+++++.|.     ...|.|+.+|.+.+|||+...++|.....
T Consensus       135 v~Gd~VN~AaRLe~~a~~~~IlvS~~~~~~l~~~~~~~~~~~~~~~g~~~lKG~~~~~~vy~l~~~  200 (219)
T 2wz1_A          135 LFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRK  200 (219)
T ss_dssp             EESHHHHHHHHHHHTSCTTSEEEEHHHHHHTTSTTTCCTTEEEEEEEEECCTTCSSCEEEEEEEES
T ss_pred             EECHHHHHHHHHHhcCCCCeEEECHHHHHHHhhhcccCCceEEEEeCCEEecCCCccEEEEEEecc
Confidence            348888888    5667999999999999996     24699999999999999996666655433

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.01  E-value=0.0022  Score=54.26  Aligned_cols=87  Identities=10%  Similarity=0.026  Sum_probs=52.6

Q ss_pred             CeEEEEEEe----CCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         95 KYLVFFFYP----LDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        95 k~vlL~F~~----~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      ++|+|.||.    +.||++|...+|.+.++++++.+ ..+.+..|..                            |.+.+
T Consensus        21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~----------------------------~~~~~   72 (229)
T 2ywm_A           21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP----------------------------FTHKE   72 (229)
T ss_dssp             SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT----------------------------TTCHH
T ss_pred             CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecC----------------------------cccHH
Confidence            456666663    55666777888888888877743 2355544422                            33567


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      +++.|||.      ..|+.++++ +|.....+. +.+.+..+..++..
T Consensus        73 l~~~~~v~------~~Ptl~~~~-~~~~~~~~~-G~~~~~~l~~~~~~  112 (229)
T 2ywm_A           73 ETEKYGVD------RVPTIVIEG-DKDYGIRYI-GLPAGLEFTTLING  112 (229)
T ss_dssp             HHHHTTCC------BSSEEEEES-SSCCCEEEE-SCCCTTHHHHHHHH
T ss_pred             HHHHcCCC------cCcEEEEEC-CCcccceec-CCccHHHHHHHHHH
Confidence            88999996      568888885 555544442 33344444444433

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=96.89  E-value=0.0062  Score=52.62  Aligned_cols=93  Identities=13%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             CCCeEEEEEEeC--CCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYPL--DFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~~--~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .+++|||.|| +  .||+    ..|.+.++.+++++ .++.|.-|.+|+.                 +      ++.+.+
T Consensus        21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~-----------------g------~~~~~~   72 (240)
T 2qc7_A           21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDY-----------------G------DKLNME   72 (240)
T ss_dssp             GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCS-----------------S------SCCSHH
T ss_pred             CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcc-----------------c------chhhHH
Confidence            3578999998 7  8887    88899999888874 3566666665431                 0      112457


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCc--EEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGV--LRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~--I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +++.|+|...    ..|+.+++ ++|+  ....+    ...+..+.+.+.+....
T Consensus        73 l~~~~~V~~~----~~PTl~~f-~~G~~~~~~~y----~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           73 LSEKYKLDKE----SYPVFYLF-RDGDFENPVPY----TGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             HHHHTTCCGG----GCSEEEEE-ETTCSSCCEEC----CSCSCHHHHHHHHHHTT
T ss_pred             HHHHcCCCCC----CCCEEEEE-eCCCcCcceee----cCCCCHHHHHHHHHHhc
Confidence            8888998411    36898888 6777  23232    12446788888887653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=96.83  E-value=0.0025  Score=46.06  Aligned_cols=74  Identities=12%  Similarity=0.058  Sum_probs=46.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCc
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY  177 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~  177 (299)
                      |+.|| +.||++|....|.|.++..++      +.-|.+|                            .+.+++.+||+.
T Consensus         3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdid----------------------------~~~~l~~~~g~~   47 (87)
T 1ttz_A            3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFID----------------------------DDAALESAYGLR   47 (87)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEECT----------------------------TCHHHHHHHTTT
T ss_pred             EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEECC----------------------------CCHHHHHHhCCC
Confidence            56677 999999998888776652211      2222222                            234567778872


Q ss_pred             ccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        178 LSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       178 ~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                             .|+.++  .||+.+.       ...+.+++.+.+....
T Consensus        48 -------vPtl~~--~~G~~v~-------g~~~~~~L~~~l~~~~   76 (87)
T 1ttz_A           48 -------VPVLRD--PMGRELD-------WPFDAPRLRAWLDAAP   76 (87)
T ss_dssp             -------CSEEEC--TTCCEEE-------SCCCHHHHHHHHHTCC
T ss_pred             -------cCeEEE--ECCEEEe-------CCCCHHHHHHHHHHHH
Confidence                   577666  7899873       1235667777776543

>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}

Probab=96.70  E-value=0.00037  Score=59.67  Aligned_cols=58  Identities=19%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             CCCCccccc----cceeccceechHHHHHHHhhc-CceEEecceeeecccc----eeEEEEEEcccc
Q psy16151        225 LRTGAINGL----SLLVIGLFQVTEKTCDILEDH-GVTCELRGRTFIKGKG----LITTYFIRQQEI  282 (299)
Q Consensus       225 ~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~-~~~~~~rg~~~~k~~~----~~~t~~~~~~~~  282 (299)
                      .+|++||.|    +...+|+|++|+++++.|.+. .|.|+.+|.+.+|++.    .+.+|+|.....
T Consensus       131 ~~Gd~VN~AaRle~~a~~~~I~vS~~~~~~l~~~~~~~~~~~g~~~lk~~~~~~~~~~~y~l~~~~~  197 (225)
T 3uvj_A          131 LFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQ  197 (225)
T ss_dssp             EESHHHHHHHHHHHTSCTTCEEECHHHHHHHTTSTTEEEEECCSTTSCTTSCTTSCCCCEEEEEEC-
T ss_pred             EECcHHHHHHHHHhcCCCCeEEECHHHHHhhcCCCceEEEEcCcEEecCCCCCCCceEEEEEecccc
Confidence            348888888    567899999999999999876 6999999999997543    778999987543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=96.69  E-value=0.0026  Score=49.33  Aligned_cols=70  Identities=7%  Similarity=-0.073  Sum_probs=48.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|+++|| +. |.+|....|.|.++.++|++ .+.++-|.+|.                            ...++.
T Consensus        22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~----------------------------~~~~a~   70 (133)
T 2djk_A           22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKA----------------------------FGAHAG   70 (133)
T ss_dssp             TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTT----------------------------TGGGTT
T ss_pred             CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHH----------------------------hHHHHH
Confidence            3568999999 77 67899999999999998875 36666665542                            123445


Q ss_pred             HhCCcccCCCCceeEEEEEeC-CCcE
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDR-NGVL  197 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~-dG~I  197 (299)
                      .||+...    ..|+.++++. +|+.
T Consensus        71 ~~gi~~~----~iPtl~i~~~~~g~~   92 (133)
T 2djk_A           71 NLNLKTD----KFPAFAIQEVAKNQK   92 (133)
T ss_dssp             TTTCCSS----SSSEEEEECTTTCCB
T ss_pred             HcCCCcc----cCCEEEEEecCcCcc
Confidence            6777521    2688888864 5776

>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*

Probab=96.60  E-value=8.8e-05  Score=63.50  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhcCceEEecc----eeeecccceeEEEEEEcccc
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRG----RTFIKGKGLITTYFIRQQEI  282 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg----~~~~k~~~~~~t~~~~~~~~  282 (299)
                      ..+|++||.|    +...+|+|++|+++++.|.+ .|.|+..+    .+.+|||| ++||||.+...
T Consensus       150 ~v~Gd~VN~AaRLe~~a~~g~IlvS~~t~~~l~~-~f~~~~~~~~~r~~~lKg~~-v~~Y~l~~~~~  214 (220)
T 1azs_A          150 DVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG-DYEVEPGCGGERNAYLKEHS-IETFLILRCTQ  214 (220)
T ss_dssp             EEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTT-CSCEEECCGGGTCHHHHHTT-CCCEEEC----
T ss_pred             EEEchHHHHHHHHHhcCCCCeEEECHHHHHhhcC-ceEEEECcCccccceecCCc-eEEEEEecccc
Confidence            4458889988    56778999999999999976 58888742    45899998 79999988644

>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}

Probab=96.59  E-value=0.0009  Score=56.39  Aligned_cols=56  Identities=14%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccc-eeEEEEEEcccc
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKG-LITTYFIRQQEI  282 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~-~~~t~~~~~~~~  282 (299)
                      .|++||.|    +...+|+|.+|+++++.|.. .|.++..|.+.+||++ .+.+|++.+...
T Consensus       137 ~G~~Vn~AaRl~~~a~~~~I~vs~~~~~~l~~-~~~~~~~~~~~lkG~~~~~~vy~v~~~~~  197 (208)
T 2w01_A          137 VGAQVNLTYRIESYTTGGQIFISSTTLEAAGD-RVHVNGNRTVQPKGVKDPVVIWDVAGVGE  197 (208)
T ss_dssp             ESHHHHHHHHHHHTCCTTCEEEEHHHHHHHCT-TEEEEEEEEECCTTCSSCEEEEEEEEECT
T ss_pred             ECHHHHHHHHHHccCCCCeEEECHHHHHhhhc-ceEecccceEeecCCCCcEEEEEEccCCc
Confidence            36667666    45678999999999999987 5899999999999985 688999987644

>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*

Probab=96.51  E-value=0.00043  Score=58.97  Aligned_cols=53  Identities=15%  Similarity=0.056  Sum_probs=43.6

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccc-eeEEEEEEcc
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKG-LITTYFIRQQ  280 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~-~~~t~~~~~~  280 (299)
                      .|++||.|    +...+|+|.+|+++++.|...  .++.+|.+.+||++ .+.+|++...
T Consensus       158 ~Gd~VN~AaRLe~~a~~g~IlvS~~~~~~l~~~--~~~~~g~~~lKG~~~~v~vy~v~~~  215 (219)
T 1wc3_A          158 IGPSVNIAARLQEATAPNSIMVSAMVAQYVPDE--EIIKREFLELKGIDEPVMTCVINPN  215 (219)
T ss_dssp             ESHHHHHHHHHHHHSCTTEEEEEHHHHTTSCGG--GEEEEEEECCTTCSSCEEEEEECSC
T ss_pred             ECHHHHHHHHHHhcCCCCeEEECHHHHHhhccc--ceeEeeeEEecccCCcEEEEEEcCc
Confidence            47777777    456689999999999998764  68899999999998 5888888764

>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0

Probab=96.50  E-value=0.00093  Score=55.66  Aligned_cols=55  Identities=18%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccce-eEEEEEEccc
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGL-ITTYFIRQQE  281 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~-~~t~~~~~~~  281 (299)
                      .|++||.|    +...+|+|.+|+++++.|.+ .|.|+.+|++.+||++. ++.|-|.+.+
T Consensus       135 ~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~-~~~~~~~g~~~lkG~~~p~~vy~v~~~~  194 (198)
T 3r5g_A          135 IGREVNLASRLESASEAGEILISHETYSLIKD-VIMCRDKGQIAVKGFSRPVQIYQVVDSR  194 (198)
T ss_dssp             ESHHHHHHHHHHHHCCTTCEEEEHHHHHHHTT-TSCEEEEEEECCTTCSSCEEEEEECCCT
T ss_pred             ECcHHHHHHHHHhhCCCCcEEECHHHHHHhhc-CceEEEcccEEeecCCCcEEEEEEeeec
Confidence            36667776    45667999999999999986 58899999999999986 7777776543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.44  E-value=0.001  Score=49.28  Aligned_cols=47  Identities=9%  Similarity=-0.041  Sum_probs=30.6

Q ss_pred             ceEEcCccC-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         85 KEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        85 ~~v~Lsd~~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      ..-.|..-. .+++|++|+ +.|||+|....+.|.++.     .++.+.-|.+|
T Consensus         5 ~~~~l~~~~~~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~   52 (100)
T 1wjk_A            5 SSGNLSASNRALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDIT   52 (100)
T ss_dssp             CCCCCCCSCCCCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETT
T ss_pred             cchhhhhccCCCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECC
Confidence            333444433 346777777 999999998887776542     34677667665

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=96.41  E-value=0.002  Score=48.57  Aligned_cols=38  Identities=11%  Similarity=0.085  Sum_probs=29.6

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .+|+.|| +.||++|....+.|.++.+++   ++.+.-|.+|
T Consensus        30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId   67 (107)
T 2fgx_A           30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINID   67 (107)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETT
T ss_pred             cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence            4577777 999999999999999887664   4666666665

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=96.38  E-value=0.0015  Score=46.16  Aligned_cols=37  Identities=8%  Similarity=-0.080  Sum_probs=29.0

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      |+.|+ ++|||.|....+.|.++..+++  ++.+..+.++
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~   39 (85)
T 1ego_A            3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEecc
Confidence            45566 8999999999999999877653  6787777654

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.04  E-value=0.03  Score=50.65  Aligned_cols=92  Identities=11%  Similarity=0.106  Sum_probs=59.3

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY  174 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~  174 (299)
                      +.++|.|+ +.||+.|....+.+.+++++|+++ +.++.|..+..                          ....+++.|
T Consensus       136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~--------------------------~~~~~~~~f  187 (361)
T 3uem_A          136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT--------------------------DNQRILEFF  187 (361)
T ss_dssp             CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG--------------------------GGHHHHHHT
T ss_pred             CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH--------------------------HHHHHHHHc
Confidence            35566676 899999999999999999999863 55555544321                          124677788


Q ss_pred             CCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        175 GVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       175 gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |+..    ...|+..+++..+.. .+..   .......+.+.+.+...
T Consensus       188 gi~~----~~~P~~~~~~~~~~~~ky~~---~~~~~~~~~l~~fi~~~  228 (361)
T 3uem_A          188 GLKK----EECPAVRLITLEEEMTKYKP---ESEELTAERITEFCHRF  228 (361)
T ss_dssp             TCCT----TTCSEEEEEECC--CCEECC---SSCCCCHHHHHHHHHHH
T ss_pred             CCCc----cCCccEEEEEcCCcccccCC---CccccCHHHHHHHHHHH
Confidence            8852    136898888874433 3221   12344666777666554

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.55  E-value=0.014  Score=40.65  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=24.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      |+.|+ +.|||+|....+.|.+       .++.+..+.++.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   35 (81)
T 1h75_A            3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR   35 (81)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence            45566 8999999988776654       367777777764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.54  E-value=0.037  Score=47.50  Aligned_cols=30  Identities=13%  Similarity=0.040  Sum_probs=25.0

Q ss_pred             CCeEEEEEEeCCC--CCCchhhHHHHHHHHHHH
Q psy16151         94 GKYLVFFFYPLDF--TFVCPTEILAFNDRLEEF  124 (299)
Q Consensus        94 Gk~vlL~F~~~~~--cp~C~~~~~~l~~l~~~~  124 (299)
                      +++|+|.|| +.|  |+.|....+.+.++.+.+
T Consensus        25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~   56 (243)
T 2hls_A           25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEES   56 (243)
T ss_dssp             CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhc
Confidence            468999998 777  999999988888887664

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=95.53  E-value=0.0082  Score=49.72  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+.++
T Consensus        23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            4788888888 99999999999999999888876 6777766654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=95.34  E-value=0.0091  Score=53.02  Aligned_cols=37  Identities=8%  Similarity=0.095  Sum_probs=27.2

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHH
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE  123 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~  123 (299)
                      .+.+++...+..+++|| +.|||+|+...|.+.++.++
T Consensus       189 ~~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~  225 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQ  225 (291)
T ss_dssp             HHHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHH
Confidence            45565554444578888 99999999999988877533

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.21  E-value=0.0038  Score=52.23  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=35.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++++|+.|| +.|||+|....|.+   .++.+++.+ ++.+.-+.++
T Consensus       112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~  157 (197)
T 1un2_A          112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (197)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence            4788999999 89999999999988   888877764 6777777664

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=94.92  E-value=0.04  Score=47.70  Aligned_cols=95  Identities=16%  Similarity=0.073  Sum_probs=60.5

Q ss_pred             CCCeEEEEEEe-CCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151         93 YGKYLVFFFYP-LDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK  169 (299)
Q Consensus        93 ~Gk~vlL~F~~-~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~  169 (299)
                      .+++|||.||. +.||+    ..|.+.++.+++..  .++.|.-|.+|....                       ..+.+
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~-----------------------~~n~~   84 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------------LENKA   84 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------------CTTHH
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc-----------------------cccHH
Confidence            45688898885 77887    88889999888864  356666666543100                       00356


Q ss_pred             HHHHhCCcccCCCCceeEEEEEeCCCcE--EEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        170 ISLDYGVYLSDQGHTLRGLFIIDRNGVL--RQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I--~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      +++.|+|..    ...|+.+++ + |++  ...+  ....++..+.+.+.+....
T Consensus        85 la~~~~V~~----~~~PTl~~F-~-G~~~~~~~y--~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           85 LGDRYKVDD----KNFPSIFLF-K-GNADEYVQL--PSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             HHHHTTCCT----TSCCEEEEE-S-SSSSSEEEC--CTTSCCCHHHHHHHHHHHS
T ss_pred             HHHHhCCCc----CCCCeEEEE-e-CCcCcceee--cccCCCCHHHHHHHHHHhh
Confidence            888899841    136898888 4 873  2221  0123467788888887653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.70  E-value=0.03  Score=38.01  Aligned_cols=33  Identities=6%  Similarity=0.113  Sum_probs=23.4

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ++.|+ +.|||.|....+.|.+       .|+.+..+.++.
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~-------~~i~~~~~di~~   35 (75)
T 1r7h_A            3 ITLYT-KPACVQCTATKKALDR-------AGLAYNTVDISL   35 (75)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             EEEEe-CCCChHHHHHHHHHHH-------cCCCcEEEECCC
Confidence            34455 8999999988777664       367766677664

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=93.86  E-value=0.081  Score=38.78  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      ++.|+ +.|||.|....+.|.++       |+.+-.+.+|
T Consensus        24 v~ly~-~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~   55 (103)
T 3nzn_A           24 VIMYG-LSTCVWCKKTKKLLTDL-------GVDFDYVYVD   55 (103)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHH-------TBCEEEEEGG
T ss_pred             EEEEc-CCCCchHHHHHHHHHHc-------CCCcEEEEee
Confidence            44566 89999999888777654       4554445554

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=93.10  E-value=0.026  Score=46.48  Aligned_cols=43  Identities=14%  Similarity=0.069  Sum_probs=32.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++++|+.|| ..|||+|....|.+   .++.+++.+ ++.++-+.++
T Consensus        13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            4578899998 99999999998886   466666654 6777776543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=93.02  E-value=0.16  Score=40.07  Aligned_cols=33  Identities=24%  Similarity=0.086  Sum_probs=24.0

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHH
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDR  120 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l  120 (299)
                      +.+..-.++.+|+.|. -.+||.|....+.+.++
T Consensus         7 i~~~~~~a~~~vv~f~-D~~Cp~C~~~~~~l~~l   39 (147)
T 3gv1_A            7 IKEVRGNGKLKVAVFS-DPDCPFCKRLEHEFEKM   39 (147)
T ss_dssp             EEEEETTCCEEEEEEE-CTTCHHHHHHHHHHTTC
T ss_pred             eeeecCCCCEEEEEEE-CCCChhHHHHHHHHhhc
Confidence            3343335677777777 88999999988887654

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=93.00  E-value=0.038  Score=45.32  Aligned_cols=39  Identities=13%  Similarity=-0.061  Sum_probs=31.7

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~  136 (299)
                      ++++|+.|| ..|||+|....|.+.++.+++   ++.+.-+.+
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence            678899998 899999999999999998888   455555544

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.85  E-value=0.094  Score=40.35  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .|+| |+ +.|||+|....+.|.++       ++.+..+.+|
T Consensus        28 ~vvv-f~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid   60 (130)
T 2cq9_A           28 CVVI-FS-KTSCSYCTMAKKLFHDM-------NVNYKVVELD   60 (130)
T ss_dssp             SEEE-EE-CSSCSHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             cEEE-EE-cCCChHHHHHHHHHHHc-------CCCcEEEECc
Confidence            3444 66 89999999888777654       4555555554

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=92.23  E-value=0.074  Score=38.81  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=16.9

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDR  120 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l  120 (299)
                      |+.|+ +.|||+|....+.|.++
T Consensus        14 v~~f~-~~~C~~C~~~~~~L~~~   35 (105)
T 1kte_A           14 VVVFI-KPTCPFCRKTQELLSQL   35 (105)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHS
T ss_pred             EEEEE-cCCCHhHHHHHHHHHHc
Confidence            55566 89999999887777654

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=91.71  E-value=0.33  Score=34.14  Aligned_cols=32  Identities=3%  Similarity=0.095  Sum_probs=22.0

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      ++.|+ +.|||.|....+.|.+.       ++.+..+.++
T Consensus         8 v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~   39 (89)
T 2klx_A            8 IILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS   39 (89)
T ss_dssp             EEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred             EEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence            44454 89999999877666543       5666666666

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=91.26  E-value=0.43  Score=40.36  Aligned_cols=39  Identities=13%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             ccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151        157 KLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT  201 (299)
Q Consensus       157 ~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~  201 (299)
                      .+.++...|.+.++++.|||.      ..|+.+|++++|++....
T Consensus       184 ~i~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~  222 (244)
T 3q6o_A          184 GVAVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVP  222 (244)
T ss_dssp             TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECC
T ss_pred             ceEEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeec
Confidence            566777788779999999996      469999999999998775

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=91.17  E-value=0.12  Score=39.01  Aligned_cols=32  Identities=13%  Similarity=0.343  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCCchhh-HHHHHHHHHHHhhcC---cEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTE-ILAFNDRLEEFHQIN---TEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~g---v~vi~Vs~d  137 (299)
                      |+.|+ ++|||+|... .+.|       ++.+   +.+..+.+|
T Consensus        27 Vvvf~-~~~Cp~C~~alk~~L-------~~~~~~~i~~~~vdid   62 (118)
T 3c1r_A           27 IFVAS-KTYCPYCHAALNTLF-------EKLKVPRSKVLVLQLN   62 (118)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHH-------TTSCCCGGGEEEEEGG
T ss_pred             EEEEE-cCCCcCHHHHHHHHH-------HHcCCCCCCeEEEECc
Confidence            44466 8999999876 4433       3344   556555554

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=90.99  E-value=0.12  Score=40.83  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=17.2

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHH
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDR  120 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l  120 (299)
                      .|+| |+ +.|||+|....+.|.++
T Consensus        50 ~Vvv-f~-~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           50 CVVI-FS-KTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             SEEE-EE-CTTCHHHHHHHHHHHHH
T ss_pred             CEEE-EE-CCCChhHHHHHHHHHHc
Confidence            3444 66 89999999888777654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.90  E-value=2.5  Score=34.31  Aligned_cols=124  Identities=10%  Similarity=0.041  Sum_probs=72.2

Q ss_pred             CCCCCCcEEeeeeCCCCceEEcC----ccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         68 SKPAPFWQGTAVVDGQLKEIKLS----DYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        68 G~~aPdF~L~~~~~~~G~~v~Ls----d~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      |..-|.|---+    -.+.+..+    .-.+|+++|++. ..||+.|..-....   .++.+-++ .++.+.+.++++.+
T Consensus        29 g~~~p~F~~gs----~~~Al~~A~~~~k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~e  102 (178)
T 2ec4_A           29 GDCHPVFFIGS----LEAAFQEAFYVKARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKDS  102 (178)
T ss_dssp             CSCCCCCCCSC----HHHHHHTTTSSCTTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSHH
T ss_pred             CCCCCCeeeCC----HHHHHHHHHhhhhhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCch
Confidence            67778875211    11244555    446788888888 88999876543222   12222233 37888888888876


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHH---HHhCCcccCCCCceeEEEEEeCCC---cEEEEEeccCCCCCCHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKIS---LDYGVYLSDQGHTLRGLFIIDRNG---VLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~---~~~gv~~~~~g~~~p~~~lID~dG---~I~~~~~~~~~~g~~~~ev  214 (299)
                      ....+.....+     ..        ...++   +.|++.      ..|...+|+++|   +|+.+..+.    .+.+++
T Consensus       103 ~~~~~~~~~~~-----~~--------g~~~a~~~~~~~~~------~~P~l~ii~~~~~~~~vl~~~~G~----~~~~~l  159 (178)
T 2ec4_A          103 NRARFLTMCNR-----HF--------GSVVAQTIRTQKTD------QFPLFLIIMGKRSSNEVLNVIQGN----TTVDEL  159 (178)
T ss_dssp             HHHHHHHHHHH-----HT--------CHHHHHHHHHSCST------TCSEEEEECCCSSCCCEEEEECSC----CCHHHH
T ss_pred             hhhhhhhhhhh-----hh--------HHHHHHHHhhcCCC------CCCeEEEEEcCCCceEEEEEEeCC----CCHHHH
Confidence            54444433210     00        12233   447764      568999998774   666666332    356777


Q ss_pred             HHHHhh
Q psy16151        215 LRLVQA  220 (299)
Q Consensus       215 l~~l~~  220 (299)
                      +..+..
T Consensus       160 l~~L~~  165 (178)
T 2ec4_A          160 MMRLMA  165 (178)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=90.73  E-value=0.06  Score=40.30  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=16.0

Q ss_pred             EEEEEEeCCCCCCchhhHHHHHH
Q psy16151         97 LVFFFYPLDFTFVCPTEILAFND  119 (299)
Q Consensus        97 vlL~F~~~~~cp~C~~~~~~l~~  119 (299)
                      .|+.|+ ++|||+|....+.|.+
T Consensus        20 ~vv~f~-~~~Cp~C~~~~~~L~~   41 (114)
T 2hze_A           20 KVTIFV-KYTCPFCRNALDILNK   41 (114)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHTT
T ss_pred             CEEEEE-eCCChhHHHHHHHHHH
Confidence            455666 8999999877665543

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=90.33  E-value=0.23  Score=36.23  Aligned_cols=35  Identities=9%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         97 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        97 vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      -|+.|+ ..|||.|......|.++       |+.+..+.++..
T Consensus        17 ~v~vy~-~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~   51 (99)
T 3qmx_A           17 KIEIYT-WSTCPFCMRALALLKRK-------GVEFQEYCIDGD   51 (99)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEECTTC
T ss_pred             CEEEEE-cCCChhHHHHHHHHHHC-------CCCCEEEEcCCC
Confidence            344455 89999999888777654       566666666553

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=89.41  E-value=0.42  Score=32.68  Aligned_cols=32  Identities=9%  Similarity=0.155  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      ++.|+ ..|||.|....+.|.+.       |+.+..+.++
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~~i~   34 (82)
T 1fov_A            3 VEIYT-KETCPYCHRAKALLSSK-------GVSFQELPID   34 (82)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             EEEEE-CCCChhHHHHHHHHHHC-------CCCcEEEECC
Confidence            34455 88999999877666543       5555556655

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=88.89  E-value=0.6  Score=33.66  Aligned_cols=31  Identities=6%  Similarity=0.010  Sum_probs=21.3

Q ss_pred             eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151        103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus       103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ..+|||.|...-..|.       ++|+.+.-+.++...
T Consensus        10 s~~~Cp~C~~aK~~L~-------~~gi~y~~idi~~d~   40 (92)
T 2lqo_A           10 TTSWCGYCLRLKTALT-------ANRIAYDEVDIEHNR   40 (92)
T ss_dssp             ECTTCSSHHHHHHHHH-------HTTCCCEEEETTTCH
T ss_pred             cCCCCHhHHHHHHHHH-------hcCCceEEEEcCCCH
Confidence            3899999987654443       457777777776533

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=88.13  E-value=0.3  Score=36.16  Aligned_cols=32  Identities=13%  Similarity=0.305  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      |+.|+ .+|||+|....+.|.+       .|+..-.+.+|
T Consensus        21 v~vy~-~~~Cp~C~~~~~~L~~-------~~i~~~~~di~   52 (113)
T 3rhb_A           21 VVIYS-KTWCSYCTEVKTLFKR-------LGVQPLVVELD   52 (113)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCCeEEEee
Confidence            44455 8999999977766654       35554445444

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=87.73  E-value=0.24  Score=40.67  Aligned_cols=42  Identities=14%  Similarity=0.156  Sum_probs=32.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASV  136 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~  136 (299)
                      .++++|+.|+ ..+||+|....+.+   .++.+++.+ ++.++-+..
T Consensus        20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~   64 (191)
T 3l9s_A           20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV   64 (191)
T ss_dssp             CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred             CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence            4578888888 88999999998886   578787765 566666653

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=87.69  E-value=10  Score=31.34  Aligned_cols=94  Identities=10%  Similarity=0.004  Sum_probs=56.1

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +.+.++.+|...||+.|....+.+.++.++++++ +.++.+..+...                          .+.+.+.
T Consensus       130 ~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~--------------------------~~~~l~~  182 (227)
T 4f9z_D          130 VIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKE--------------------------NGKVISF  182 (227)
T ss_dssp             SCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGG--------------------------GHHHHHH
T ss_pred             CCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHh--------------------------HHHHHHH
Confidence            4445544444678988988889999998888763 555555443211                          1234455


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ||+...    ..|+..+++..+...+....   .....+.+.+.++.+
T Consensus       183 fgl~~~----~~P~~~i~~~~~~~ky~~~~---~~~t~~~i~~Fv~~~  223 (227)
T 4f9z_D          183 FKLKES----QLPALAIYQTLDDEWDTLPT---AEVSVEHVQNFCDGF  223 (227)
T ss_dssp             TTCCGG----GCSEEEEEESSSCCEEEETT---CCCCHHHHHHHHHHH
T ss_pred             cCCCcc----cCCEEEEEECCCCccccCCc---CCCCHHHHHHHHHHH
Confidence            676421    35888888876654554421   123566666666554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=87.33  E-value=7.4  Score=38.13  Aligned_cols=141  Identities=11%  Similarity=0.011  Sum_probs=79.4

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc-C--CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh----------h----
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-Y--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH----------Q----  126 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~--Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~----------~----  126 (299)
                      .+.+|..+|++.+..  ..+|++++|.|+ .  |+++||.|- +.-.  .......+.++.+.+.          .    
T Consensus       478 ~~~~G~r~p~~~~~~--~~~g~~~~l~~~l~~~g~~~ll~~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  552 (665)
T 1pn0_A          478 NCVVGTRFKSQPVVR--HSEGLWMHFGDRLVTDGRFRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTPKGAD  552 (665)
T ss_dssp             TSCTTSBCCCCEEEE--TTTTEEEEGGGGCCCSSCEEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSBTTSC
T ss_pred             CCCCcCCCCCCeEEe--cCCCcEEEHhHhhccCCCEEEEEec-CCcc--cchhHHHHHHHHHHhhccccHHhhcCCcccC
Confidence            467899999999752  347889999984 3  689999985 3211  1222334444444442          1    


Q ss_pred             --cCcEEEEEeCCCHHhHHHHhhcccc-cCCCCccc-eeeeec------CchHHHHHhCCcccCCCCceeEEEEEeCCCc
Q psy16151        127 --INTEVVAASVDSHFTHLAWVNTPRK-EGGLGKLK-IPLLSD------LTHKISLDYGVYLSDQGHTLRGLFIIDRNGV  196 (299)
Q Consensus       127 --~gv~vi~Vs~d~~~~~~~~~~~~~~-~~~~~~~~-~p~l~D------~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~  196 (299)
                        .-+.++.|...+.... ++.. +.. ...+ +.. +.++.|      ..+.+++.||+...     ....+||-|||-
T Consensus       553 ~~~~~~~~~i~~~~~~~~-~~~~-~p~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~-----~g~~vlvRPD~y  624 (665)
T 1pn0_A          553 RNSRIDVITIHSCHRDDI-EMHD-FPAPALHP-KWQYDFIYADCDSWHHPHPKSYQAWGVDET-----KGAVVVVRPDGY  624 (665)
T ss_dssp             TTSSEEEEEEESSCTTSC-CGGG-SCTTTTSC-TTCCSSEEECSCCSSSCCCCHHHHHTBCTT-----TCEEEEECTTSB
T ss_pred             ccceeEEEEEecCCCCcc-chhh-CCHHHcCc-ccchheEeecCcccccccccHHHHcCCCCC-----CceEEEECCCCc
Confidence              1266776743321110 1111 000 0000 011 234556      34679999998421     236789999999


Q ss_pred             EEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        197 LRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       197 I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      |-++..     ..+.+++.+.+..+-
T Consensus       625 V~~~~~-----~~~~~~l~~~~~~~~  645 (665)
T 1pn0_A          625 TSLVTD-----LEGTAEIDRYFSGIL  645 (665)
T ss_dssp             EEEEEC-----TTTHHHHHHHHHTTB
T ss_pred             EEEEec-----cccHHHHHHHHHHHh
Confidence            998862     224667777776654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=87.22  E-value=0.43  Score=34.87  Aligned_cols=26  Identities=8%  Similarity=-0.102  Sum_probs=18.5

Q ss_pred             CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151        105 DFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus       105 ~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .|||+|....+.|.++       ++.+.-+.++
T Consensus        30 ~~C~~C~~~~~~L~~~-------~i~~~~vdi~   55 (105)
T 2yan_A           30 AKCGFSKQILEILNST-------GVEYETFDIL   55 (105)
T ss_dssp             BCTTHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred             CCCccHHHHHHHHHHC-------CCCeEEEECC
Confidence            8999999877766654       5666556554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=87.08  E-value=0.39  Score=35.83  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=22.0

Q ss_pred             eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      .|+| |. .+|||.|....+.|.+       .|+..-.+.+|.
T Consensus        18 ~v~v-y~-~~~Cp~C~~ak~~L~~-------~~i~~~~~dvd~   51 (114)
T 3h8q_A           18 RVVI-FS-KSYCPHSTRVKELFSS-------LGVECNVLELDQ   51 (114)
T ss_dssp             SEEE-EE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             CEEE-EE-cCCCCcHHHHHHHHHH-------cCCCcEEEEecC
Confidence            3444 55 8999999877766654       356655566653

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=86.81  E-value=0.39  Score=36.86  Aligned_cols=19  Identities=21%  Similarity=0.312  Sum_probs=13.1

Q ss_pred             EEEEEeCCCCCCchhh-HHHH
Q psy16151         98 VFFFYPLDFTFVCPTE-ILAF  117 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~-~~~l  117 (299)
                      |+.|+ .+|||.|... .+.|
T Consensus        39 Vvvy~-~~~Cp~C~~a~k~~L   58 (129)
T 3ctg_A           39 VFVAA-KTYCPYCKATLSTLF   58 (129)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHH
T ss_pred             EEEEE-CCCCCchHHHHHHHH
Confidence            44555 8999999876 4433

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=86.66  E-value=0.49  Score=33.35  Aligned_cols=33  Identities=9%  Similarity=0.057  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ++.|+ ..|||.|....+.|.+       .|+.+..+.++.
T Consensus         8 v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~~   40 (92)
T 2khp_A            8 VIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDASA   40 (92)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEESTT
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence            44555 8899999877665554       366666666653

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=86.62  E-value=1.1  Score=32.81  Aligned_cols=36  Identities=8%  Similarity=-0.027  Sum_probs=24.1

Q ss_pred             CeEEEEEEeC----CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         95 KYLVFFFYPL----DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        95 k~vlL~F~~~----~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      ..|+|++. +    .|||.|......|.+       .|+.+..+.++.
T Consensus        15 ~~vvvy~~-g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vdi~~   54 (109)
T 1wik_A           15 ASVMLFMK-GNKQEAKCGFSKQILEILNS-------TGVEYETFDILE   54 (109)
T ss_dssp             SSEEEEES-STTTCCCSSTHHHHHHHHHH-------TCSCEEEEESSS
T ss_pred             CCEEEEEe-cCCCCCCCchHHHHHHHHHH-------cCCCeEEEECCC
Confidence            34555443 3    899999977766654       477777777764

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=85.41  E-value=14  Score=35.79  Aligned_cols=141  Identities=13%  Similarity=0.052  Sum_probs=77.0

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCch-hhHHHHHHHH--------HHHhhc----
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCP-TEILAFNDRL--------EEFHQI----  127 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~--------~~~~~~----  127 (299)
                      .+.+|..+|++.+..  ..+|++++|.|+   .|+++||.|- +.-.+.+. ..+..+.+..        ..|...    
T Consensus       466 ~~~~G~r~p~~~~~~--~~~g~~~~l~~~~~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  542 (639)
T 2dkh_A          466 GFTVGMRFHSAPVVR--VCDAKPVQLGHCGKADGRWRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDI  542 (639)
T ss_dssp             TSCTTSBCCCCEEEE--TTTCCEEEGGGGCCSSSCEEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCT
T ss_pred             CCCCcCCCCCCeEEe--cCCCCEEEHHHhhccCCCEEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCc
Confidence            467899999998752  347889999984   3689999985 33233333 3333333322        233211    


Q ss_pred             --CcEEEEEeCCCHHh-----HHHHhhcccccCCCCcc-c-eeeeecC---c-hHHHHHhCCcccCCCCceeEEEEEeCC
Q psy16151        128 --NTEVVAASVDSHFT-----HLAWVNTPRKEGGLGKL-K-IPLLSDL---T-HKISLDYGVYLSDQGHTLRGLFIIDRN  194 (299)
Q Consensus       128 --gv~vi~Vs~d~~~~-----~~~~~~~~~~~~~~~~~-~-~p~l~D~---~-~~~~~~~gv~~~~~g~~~p~~~lID~d  194 (299)
                        =++++.|...+..+     ....+.......   ++ . ..++.|.   . +.+.+.||+...     ....+||-||
T Consensus       543 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~g~~~~-----~g~~v~vRPD  614 (639)
T 2dkh_A          543 DSIFDLRAVFPQAYTEVALETLPALLLPPKGQL---GMIDYEKVFSPDLKNAGQDIFELRGIDRQ-----QGALVVVRPD  614 (639)
T ss_dssp             TSSEEEEEECSSCGGGCCGGGSCGGGSCEETTT---TEECCCSEEECCCSSTTCCHHHHTTBCTT-----TCEEEEECTT
T ss_pred             CceEEEEEEecCCCCccchhhCcHhhCCccccc---ccccceeEEeCCCcccccchHHHhCCCCC-----ceEEEEECCC
Confidence              15666664332111     111111110000   11 1 2456663   1 569999998421     2467899999


Q ss_pred             CcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        195 GVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       195 G~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |-|-++..     ..+.+.+.+.+..
T Consensus       615 ~yv~~~~~-----~~~~~~l~~~~~~  635 (639)
T 2dkh_A          615 QYVAQVLP-----LGDHAALSAYFES  635 (639)
T ss_dssp             SBEEEEEC-----TTCHHHHHHHHHT
T ss_pred             CceEEeec-----hhhHHHHHHHHHH
Confidence            99988762     1234555555544

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=85.01  E-value=1.2  Score=35.90  Aligned_cols=43  Identities=7%  Similarity=-0.048  Sum_probs=33.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHH-HHHHHHHhhcCcEEEEEeCC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAF-NDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l-~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      .++++++.|| ...||.|....+.+ .++.+++.. .+.+..+..+
T Consensus        16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred             CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence            3667888888 68999999999998 888877763 5777766654

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=84.94  E-value=1.2  Score=30.77  Aligned_cols=21  Identities=14%  Similarity=0.053  Sum_probs=14.4

Q ss_pred             EEEEEeCCCCCCchhhHHHHHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFND  119 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~  119 (299)
                      ++.|+ ..|||.|......|.+
T Consensus         6 v~ly~-~~~Cp~C~~~~~~L~~   26 (89)
T 3msz_A            6 VKIYT-RNGCPYCVWAKQWFEE   26 (89)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH
T ss_pred             EEEEE-cCCChhHHHHHHHHHH
Confidence            44444 8899999887655543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=84.84  E-value=0.69  Score=32.52  Aligned_cols=22  Identities=14%  Similarity=0.233  Sum_probs=15.7

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHH
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDR  120 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l  120 (299)
                      +..|+ ..|||.|......|.++
T Consensus        14 v~ly~-~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYG-LSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SEEEE-CTTCHHHHHHHHHHHHH
T ss_pred             EEEEE-CCCChHHHHHHHHHHHc
Confidence            34454 88999999877666654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=82.50  E-value=1.1  Score=35.57  Aligned_cols=40  Identities=10%  Similarity=0.045  Sum_probs=30.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      .++++|+.|+ ...||+|..--+.+.++.+++.+ ++.++-+
T Consensus        20 ~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~   59 (184)
T 4dvc_A           20 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPE-GAKFQKN   59 (184)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred             CCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCC-ceEEEEE
Confidence            4678888888 67799999988999988888765 4455444

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=82.13  E-value=9.4  Score=33.10  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=25.5

Q ss_pred             EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         97 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        97 vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      +.|..|.+.+||.|+.--..|.++..+   .++..+.+.++
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v~   81 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   81 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhcc---CCeeeEEEEEE
Confidence            445555599999999888888777554   35544555544

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=80.36  E-value=13  Score=34.93  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      ...+|..+|+.-|.   . +|+.+++-|+-|. ++||.+- .     -..-.....+..   ...|+.+-.+.+.+    
T Consensus       419 ~~~pG~r~p~~~l~---~-~~~~~~~~dl~g~~f~ll~~~-~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~----  481 (535)
T 3ihg_A          419 SGRPGFRGPHVLVS---R-HGERLSTVDLFGDGWTLLAGE-L-----GADWVAAAEAVS---AELGVPVRAYRVGA----  481 (535)
T ss_dssp             CCCTTSBCCCCEEE---E-TTEEEEGGGGCSSSEEEEECT-T-----CHHHHHHHHHHH---HHHTCCEEEEEBTT----
T ss_pred             CCCCCCcCCCceee---c-CCceeeHHHhcCCceEEEecC-C-----ccHHHHHHHHHH---HhcCCceEEEEeCC----
Confidence            46789999999874   2 6788999998776 7777631 1     111111111122   22354444443322    


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM  202 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~  202 (299)
                                    .     +.|..+.+++.||+.       ....+||-|||-|-++..
T Consensus       482 --------------~-----~~d~~~~~~~~~~~~-------~~~~~lvRPD~~va~r~~  515 (535)
T 3ihg_A          482 --------------G-----LTDPESAVSERYGIG-------KAGASLVRPDGIVAWRTD  515 (535)
T ss_dssp             --------------T-----BBCSSCCHHHHHTCT-------TTCEEEECTTSBEEEEES
T ss_pred             --------------c-----cccCcchHHHHhCCC-------CCceEeeCCCceeEEecC
Confidence                          1     346778899999985       246899999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	8e-47
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	1e-46
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	2e-44
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	4e-39
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	2e-36
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	3e-36
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	5e-36
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	6e-34
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	3e-31
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	2e-29
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	1e-28
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	9e-25
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	9e-16
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	5e-14
d1psqa_	163	c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str	8e-14
d1xvwa1	153	c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c	2e-13
d1qxha_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c	5e-13
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	1e-12
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	8e-12
d1nm3a2	163	c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr	3e-11
d2a4va1	156	c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y	3e-08
d1tp9a1	162	c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b	2e-07
d1azsb_	199	d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {	1e-06
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-06
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	7e-05
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	0.003
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	0.004

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (389), Expect = 8e-47
 Identities = 109/156 (69%), Positives = 129/156 (82%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           + KPAP ++ TAVVDG  KE+KLSDY GKY+V FFYPLDFTFVCPTEI+AF++R E+F +
Sbjct: 7   IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK 66

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
           +  EV+  SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV  +D+G   R
Sbjct: 67  LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYR 126

Query: 187 GLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           GLFIID  GVLRQIT+NDLPVGRSVDE LRLVQAF 
Sbjct: 127 GLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ 162

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  152 bits (385), Expect = 1e-46
 Identities = 106/153 (69%), Positives = 127/153 (83%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
           + AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+  EFH +N
Sbjct: 1   QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60

Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
            EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L   G  LRGL
Sbjct: 61  CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGL 120

Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           FIID NGV++ +++NDLPVGRSV+ETLRLV+AF
Sbjct: 121 FIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 153

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  147 bits (372), Expect = 2e-44
 Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 1/155 (0%)

Query: 69  KPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127
            PAP +  TA++ +G  K++ L+ Y GK+LV FFYP+DFTFVCPTEI  F+DR++EF  I
Sbjct: 7   HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 66

Query: 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG 187
             EV+A S+DS ++HLAW +  RK GGLG++ IP+L+D T  I   YGV   + G   RG
Sbjct: 67  GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 126

Query: 188 LFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           LFIID    LRQIT+NDLPVGR VDE LRLV+AF 
Sbjct: 127 LFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 161

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score =  133 bits (334), Expect = 4e-39
 Identities = 81/156 (51%), Positives = 113/156 (72%), Gaps = 1/156 (0%)

Query: 67  VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           ++ PAP +   A++ +G  K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D  + F 
Sbjct: 5   LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFA 64

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           +INTEV++ S DS ++HL W +  RK+GGLG + IP+L+D T  I+  YGV   D G   
Sbjct: 65  EINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAY 124

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           RG+FIID NG LRQI +ND+P+GR+V+E +RLV+A 
Sbjct: 125 RGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 160

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  126 bits (316), Expect = 2e-36
 Identities = 70/153 (45%), Positives = 102/153 (66%), Gaps = 3/153 (1%)

Query: 71  APFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
           AP ++  AV  D    E+ LSD+ G KY++ +FYPLDFTFVCP+EI+A +  L+ F + N
Sbjct: 2   APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61

Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
            E++  SVDS FTHLAW  TP  +GG+G +K  L+SD++  I+  Y V   ++   LR  
Sbjct: 62  VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL-FNESVALRAF 120

Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            +ID+ GV++ + +N+L +GRSVDE LRL+ A 
Sbjct: 121 VLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 153

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score =  126 bits (316), Expect = 3e-36
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           L++     ++  A  +G+  E+   D  G++ VFFFYP DFTFV PTE+    D  EE  
Sbjct: 2   LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           ++  +V + S D+HFTH AW         + K+K  ++ D T  ++ ++     D+G   
Sbjct: 62  KLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLAD 118

Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
           R  F++D  G+++ I +    +GR   + LR ++A  
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score =  125 bits (314), Expect = 5e-36
 Identities = 69/159 (43%), Positives = 104/159 (65%), Gaps = 4/159 (2%)

Query: 66  LVSKPAPFWQGTAVVDGQ--LKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLE 122
           +V+K AP ++  AV+      +  +LS   GK  ++ FF+P DFTFVCPTEI+AF+ R++
Sbjct: 2   VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +FH+    V+  S+DS   H AW NTP ++GG+G++  P+++D+T  IS DY V   +  
Sbjct: 62  DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAI 121

Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             LRG F+ID+N  +R   +NDLP+GR+ DE LR+V A 
Sbjct: 122 -ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score =  120 bits (300), Expect = 6e-34
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 66  LVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           L+      ++  A   G+   E+  +D  GK+ +  FYP DF+FVCPTE+        E 
Sbjct: 2   LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            ++  EV + S D+HF H AW         +G ++  ++ D +  IS  + V   + G  
Sbjct: 62  KKLGVEVYSVSTDTHFVHKAW---HENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
            RG FIID +GV++ I +N   +GR     +  V+A 
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score =  114 bits (286), Expect = 3e-31
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLE 122
           L+ +  P  +    V      IKL D+Y   GK+ V F +P DFT VC TE ++F  R E
Sbjct: 2   LIGERFPEME----VTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYE 57

Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
           +F ++  +++  SVDS F+H+ W     +  G  ++  P+++D    ++   G+  ++  
Sbjct: 58  DFQRLGVDLIGLSVDSVFSHIKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAESA 116

Query: 183 H-TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             T+RG+FI+D  GV+R +    + +GR VDE LR+V+A 
Sbjct: 117 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 156

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 67  VSKPAP-FWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           +    P F   TA   G   + +L  Y    + + F +P DFT VC TE+       E+F
Sbjct: 4   LGATFPNF---TAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 60

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--- 181
            ++N +++  S +S  +H  W+   +  G L K +IP++ D + +++    +    +   
Sbjct: 61  LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 120

Query: 182 ---GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
                T R LF I     ++   +     GR+  E LR++++ 
Sbjct: 121 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 163

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 14/167 (8%)

Query: 66  LVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           L+   AP ++        +  I+  D+ G  + + F +P DFT VC TE+        EF
Sbjct: 2   LLGDVAPNFEANT----TVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 57

Query: 125 HQINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
            + N +++A S+DS   HLAW    N    E    KL  P++ D   ++++  G+    +
Sbjct: 58  AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 117

Query: 182 G------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222
                   T R +F+   +  L+   +     GR+ DE LR+V +  
Sbjct: 118 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ 164

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 95.5 bits (236), Expect = 9e-25
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 67  VSKPAPFWQGTAVVDGQ------------LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEI 114
           +    P +Q TA++ G                I   ++ GK+ V FF+P DFTFVCPTEI
Sbjct: 5   IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEI 64

Query: 115 LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174
            AF+   +EF   + +++  S+DS F H  W            L  P+LSD+  ++S   
Sbjct: 65  AAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLK---TLPFPMLSDIKRELSQAA 121

Query: 175 GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           GV  +D G   R  FI+D N  ++ ++     VGR+VDE LR++ A 
Sbjct: 122 GVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 167

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 71.4 bits (174), Expect = 9e-16
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 13/135 (9%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           V +    +    +V   L ++ L+D+  K  V   +P   T VC T +  FN +  +   
Sbjct: 18  VGEIVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN 74

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG---H 183
             T V+  S D  F    +      E               H +    GV +        
Sbjct: 75  --TIVLCISADLPFAQARFCGAEGIENAKTVSTFR-----NHALHSQLGVDIQTGPLAGL 127

Query: 184 TLRGLFIIDRNGVLR 198
           T R + ++D    + 
Sbjct: 128 TSRAVIVLDEQNNVL 142

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           + + AP +    + +   + + L +    G+  V  F+P  F+ VC  E+  F D++ + 
Sbjct: 4   LGEKAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 60

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---- 180
            + N EV+A SVDS +    + +         +L   LLSD   ++   Y VY  D    
Sbjct: 61  EKANAEVLAISVDSPWCLKKFKDE-------NRLAFNLLSDYNREVIKLYNVYHEDLKGL 113

Query: 181 QGHTLRGLFIIDRNGVLRQITMNDLPVGR-SVDETLRLVQA 220
           +    R +FI+  +G +    + D P+     DE +R    
Sbjct: 114 KMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANK 154

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 66.1 bits (160), Expect = 8e-14
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           V   A  +    +    L +  L+D+ GK  V    P   T +C T+   FN+ L     
Sbjct: 18  VGDKALDFS---LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN 74

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR 186
                +  S+D  F    W      EG    + +       H    DY + +++     R
Sbjct: 75  TVV--LTVSMDLPFAQKRWC---GAEGLDNAIMLS--DYFDHSFGRDYALLINEWHLLAR 127

Query: 187 GLFIIDRNGVLRQITM-NDLPVGRSVDETLRLVQA 220
            +F++D +  +R +   +++    + +  +   +A
Sbjct: 128 AVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.4 bits (155), Expect = 2e-13
 Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           V   AP +    + D   + + L  Y G K ++  F+PL FT +C  E+    D L EF 
Sbjct: 4   VGATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 60

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGH 183
             ++  +A SV    TH  W               PLLSD      +S  YGV+    G 
Sbjct: 61  NDDSAALAISVGPPPTHKIWATQSG-------FTFPLLSDFWPHGAVSQAYGVFNEQAGI 113

Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
             RG F++DR+G++R   M      R        + A
Sbjct: 114 ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 150

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 5e-13
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 14/155 (9%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
               A  +    +V   L ++ L  + GK  V   +P   T VC   +  FN    E   
Sbjct: 20  AGSKAQTFT---LVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN 76

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGH 183
                +  S D  F    +              I L +    +    YGV ++D   +G 
Sbjct: 77  TVVLCI--SADLPFAQSRFCGAEGLNN-----VITLSTFRNAEFLQAYGVAIADGPLKGL 129

Query: 184 TLRGLFIIDRNGVLRQI-TMNDLPVGRSVDETLRL 217
             R + +ID N  +     ++++      +  L +
Sbjct: 130 AARAVVVIDENDNVIFSQLVDEITTEPDYEAALAV 164

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 12/161 (7%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
           V    P             ++ L++ + GK  V F  P  FT  C    L       E  
Sbjct: 5   VGDAIP--AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62

Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
           +     V A       + A+V          + K+ LL+D T     +  + L D   ++
Sbjct: 63  KAKGVQVVAC---LSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSI 119

Query: 186 ------RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
                 +   ++ ++G+++ + +     G +      ++  
Sbjct: 120 FGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 160

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 60.3 bits (145), Expect = 8e-12
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
           V  PAP +    +  G L  I    + GK ++   +P   T VC T +  F++R      
Sbjct: 19  VGSPAPAFT---LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASGA 75

Query: 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL---SDQGH 183
               V   S D  F    +       G  G   +   S        DYGV +      G 
Sbjct: 76  TVLCV---SKDLPFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGL 126

Query: 184 TLRGLFIIDRNGVLRQI-TMNDLPVGRSVDETLRLVQA 220
             R + +I  +G +     + ++    + +  L  + A
Sbjct: 127 LARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA 164

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 7/150 (4%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEE---F 124
           K  P          +  ++  S+ +  K ++ F  P  FT  C +  L   + L      
Sbjct: 5   KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK 64

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
           + ++  +V +  D+   +    +   +             + T  + +  G      G  
Sbjct: 65  YGVDDILVVSVNDTFVMNAWKEDEKSEN---ISFIPDGNGEFTEGMGMLVGKEDLGFGKR 121

Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDET 214
                ++ +NGV+ ++ +     G     +
Sbjct: 122 SWRYSMLVKNGVVEKMFIEPNEPGDPFKVS 151

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 67  VSKPAPFWQGTAVVDGQLKEIKLSDYYG--KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
           +  P P      +++     I L       + +VFF YP   T     +   F D  +E 
Sbjct: 7   IGDPIPDLS---LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQEL 63

Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
            +         V           + +K      L   LLSD   +     G   +    +
Sbjct: 64  KEYAA------VFGLSADSVT--SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGS 115

Query: 185 LRGLFII-DRNGVLRQITMN-DLPVGRSVDETLRLVQAF 221
           +R  FI  D     +++ ++ ++ V  +  E L + + F
Sbjct: 116 IRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 81  DGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVD 137
             QL+E+ +     GK ++ F  P  FT  C  + +          +    TE++  SV+
Sbjct: 21  QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN 80

Query: 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
             F   AW  +  +   +  L     +                   + R   ++D +  +
Sbjct: 81  DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKV 139

Query: 198 RQITMND 204
           +   +  
Sbjct: 140 KAANIEG 146

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 242 QVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFI 277
           QVTE+T  IL+  G TC  RG   +KGKG + TYF+
Sbjct: 162 QVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 197

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 69  KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
              P        DG  K  KLSD+ GK L+   +   +   C  E+ A ++   +    N
Sbjct: 34  LKLPDLAFEDA-DG--KPKKLSDFRGKTLLVNLWA-TWCVPCRKEMPALDELQGKLSGPN 89

Query: 129 TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL 188
            EVVA ++D+                    ++   +D   K+  D        G  +   
Sbjct: 90  FEVVAINIDTRDPEKPKTFLKEA----NLTRLGYFNDQKAKVFQDLKAIGRALG--MPTS 143

Query: 189 FIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
            ++D  G          P   + ++ L+L++A
Sbjct: 144 VLVDPQGCEIATIAG--PAEWASEDALKLIRA 173

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 13/150 (8%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH-- 142
            E    +  GK+ + +F   +   +CP E+      L          +     +      
Sbjct: 17  NEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARD 76

Query: 143 -LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT----------LRGLFII 191
             A +     +     L +    D        Y VY S   +               +++
Sbjct: 77  SPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLM 136

Query: 192 DRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
           D  G        +      VD+ +  V+++
Sbjct: 137 DPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 13/150 (8%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH-- 142
           +     DY G++L+ +F       VCP E+      ++E   I T      +        
Sbjct: 11  ERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER 70

Query: 143 --LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRG---------LFII 191
                +    KE     + +    +   +++  Y VY S                 +++I
Sbjct: 71  DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLI 130

Query: 192 DRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
             +G        +   G         ++ +
Sbjct: 131 GPDGEFLDYFGQNKRKGEIAASIATHMRPY 160

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 13/122 (10%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 85  KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
           +   +     K  +  F+   +  +C +E+       ++    +  ++  +         
Sbjct: 14  RPASVYLKKDKPTLIKFWA-SWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKK 72

Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204
             +  +   GL   K+P+++D    I+    +             +I ++G +++I    
Sbjct: 73  DGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNIS------VYPSWALIGKDGDVQRIVKGS 126

Query: 205 LP 206
           + 
Sbjct: 127 IN 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	100.0
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	100.0
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	100.0
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	100.0
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	100.0
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	100.0
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	100.0
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	100.0
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	100.0
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.98
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.98
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.97
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.97
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.97
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.96
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.96
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.96
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.95
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.95
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.95
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.94
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.93
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.91
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.91
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.91
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.9
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.88
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.88
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.87
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.86
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.86
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.85
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.84
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.83
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.83
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.73
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.73
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.73
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.69
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.01
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.98
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.95
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.88
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.87
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.87
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.86
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.85
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.84
d1azsb_	199	Adenylyl cyclase IIC1, domain C2a {Rat (Rattus nor	98.8
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.8
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.8
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.79
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.77
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.76
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.76
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.73
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.7
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.68
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.6
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.55
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.55
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.52
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.5
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.42
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.39
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.36
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.31
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.23
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.09
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.9
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.39
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.39
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.01
d1wjka_	100	Thioredoxin-like structure containing protein C330	96.73
d1wc1a_	197	Adenylate cyclase CyaC {Spirulina platensis [TaxId	95.9
d1fx2a_	235	Receptor-type monomeric adenylyl cyclase {Trypanos	95.87
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	95.48
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.48
d1azsa_	190	Adenylyl cyclase VC1, domain C1a {Dog (Canis famil	94.34
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	94.33
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	92.92
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	86.06
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	85.33
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	84.54
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	83.17
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	83.0
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	80.63

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=253.44  Aligned_cols=164  Identities=66%  Similarity=1.100  Sum_probs=155.0

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      ..+++|++||+|+|+++.|++|+.++|+||+||++||+||++.|||+|+.|+..|++++++|++.|++|++||.|+.+.+
T Consensus         3 ~~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             TTBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHH
Confidence            46899999999999988788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+|.+..++..+..+++||+++|++++++++||+.....|.+.|++||||++|+|+++..+....+++.+++++.+++||
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            99999988887777899999999999999999999887788899999999999999999999999999999999999998


Q ss_pred             CCCC
Q psy16151        223 DPLR  226 (299)
Q Consensus       223 ~~~~  226 (299)
                      ....
T Consensus       163 ~~~~  166 (197)
T d1qmva_         163 YTDE  166 (197)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6543

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.6e-35  Score=250.03  Aligned_cols=160  Identities=54%  Similarity=0.933  Sum_probs=149.4

Q ss_pred             cCCCCCCCCcEEeee-eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~-~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      ...|.+||||+++++ .|.+|++++|+||+||+|||+||+++|||+|+.|++.|++++++|+++|++|++||.|+.+.++
T Consensus         3 ae~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~   82 (194)
T d1uula_           3 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL   82 (194)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             cccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhh
Confidence            356899999998763 3778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +|.+..+...+..+++||+++|++++++++||++....|.+.|++||||++|+|++++.+....+++.+++++.+++||.
T Consensus        83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ~  162 (194)
T d1uula_          83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQF  162 (194)
T ss_dssp             HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhhh
Confidence            99999877777778999999999999999999998877888999999999999999999999999999999999999985


Q ss_pred             C
Q psy16151        224 P  224 (299)
Q Consensus       224 ~  224 (299)
                      .
T Consensus       163 ~  163 (194)
T d1uula_         163 V  163 (194)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=100.00  E-value=4e-35  Score=242.02  Aligned_cols=158  Identities=30%  Similarity=0.543  Sum_probs=142.9

Q ss_pred             CCCCCCCCcEEeeeeC-CCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151         66 LVSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA  144 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~-~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~  144 (299)
                      .+|+++|+|++++..+ .++++++|+||+||++||+||++.|||+|+.+++.|++++++|+++|++|++||.|+++++++
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~   81 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKA   81 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHH
Confidence            3799999999997643 456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      |.+.+....   +++||+++|++++++++||+.....|.+.|++||||++|+|+++..+....+++.+++++.|++|+..
T Consensus        82 ~~~~~~~~~---~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~~~  158 (166)
T d1we0a1          82 WHENSPAVG---SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYV  158 (166)
T ss_dssp             HHHSCHHHH---TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHH
T ss_pred             Hhhhhhhhc---ccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcchh
Confidence            998864332   68999999999999999999877777888999999999999999988888889999999999999865


Q ss_pred             CC
Q psy16151        225 LR  226 (299)
Q Consensus       225 ~~  226 (299)
                      .+
T Consensus       159 ~~  160 (166)
T d1we0a1         159 RE  160 (166)
T ss_dssp             HT
T ss_pred             hh
Confidence            44

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-34  Score=236.49  Aligned_cols=155  Identities=68%  Similarity=1.185  Sum_probs=144.6

Q ss_pred             CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151         69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      +.||+|+|+++.|++|++++|+||+||+|||+|||++|||+|+.+++.|++++++|.+.|++|++||.|+.+.+++|.+.
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            47999999988788999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .+.....++++||+++|+++++++.||+.....|.+.|++||||++|+|++++.++...+++.+++++.|++||.
T Consensus        81 ~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq~  155 (158)
T d1zyea1          81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF  155 (158)
T ss_dssp             CGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             hHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence            766555558899999999999999999998777888999999999999999998888889999999999999875

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=100.00  E-value=1.4e-34  Score=238.96  Aligned_cols=160  Identities=51%  Similarity=0.940  Sum_probs=147.0

Q ss_pred             ccCCCCCCCCcEEeee-eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~-~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+++|++||||+++++ .|++|++++|+||+||+|||+||+++|||+|..+++.|++++++|+++|++|++||.|+.+++
T Consensus         2 ~~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~   81 (167)
T d1e2ya_           2 AAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSH   81 (167)
T ss_dssp             CCCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhH
Confidence            3789999999997643 488999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .+|.+..+........+|++++|+++.+++.||+.....|.+.|++||||++|+|++++.++...+++.+++++.|++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq  161 (167)
T d1e2ya_          82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQ  161 (167)
T ss_dssp             HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence            99998887666666789999999999999999998777788889999999999999999888888889999999999987


Q ss_pred             C
Q psy16151        223 D  223 (299)
Q Consensus       223 ~  223 (299)
                      .
T Consensus       162 ~  162 (167)
T d1e2ya_         162 F  162 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.7e-34  Score=239.11  Aligned_cols=154  Identities=31%  Similarity=0.584  Sum_probs=143.9

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  146 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~  146 (299)
                      +|+++|+|+++++.|++.+.++|+||+||++||+||+++|||.|..|++.|++.+++|++.|++|++||+|+.+++++|.
T Consensus         3 Ig~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~   82 (186)
T d1n8ja_           3 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWH   82 (186)
T ss_dssp             TTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHh
Confidence            69999999999877777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        147 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       147 ~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      +.+...   ..++||+++|++++++++||+..+..|.+.|++||||++|+|++++.++...+++++++++.|++||.
T Consensus        83 ~~~~~~---~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~  156 (186)
T d1n8ja_          83 SSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             HHCTTG---GGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             cccccc---ccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHHH
Confidence            876332   36899999999999999999998877888899999999999999999999999999999999999995

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.1e-33  Score=232.33  Aligned_cols=155  Identities=35%  Similarity=0.622  Sum_probs=138.4

Q ss_pred             ccCCCCCCCCcEEeeeeCC------------CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE
Q psy16151         64 FKLVSKPAPFWQGTAVVDG------------QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV  131 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~------------~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v  131 (299)
                      ++++|++||+|+|++..+.            .|+.++|+||+||++||+||+++|||+|..+++.|.+++++|+++|+++
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v   81 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   81 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcce
Confidence            5889999999999965221            2278999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCH
Q psy16151        132 VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSV  211 (299)
Q Consensus       132 i~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~  211 (299)
                      ++||.|+.+...+|.+.+...   ..++||+++|++++++++||++.. .+...|++||||++|+|++++.+....+++.
T Consensus        82 v~is~d~~~~~~~~~~~~~~~---~~~~f~ll~D~~~~v~~~ygv~~~-~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~  157 (169)
T d2bmxa1          82 LGVSIDSEFAHFQWRAQHNDL---KTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNV  157 (169)
T ss_dssp             EEEESSCHHHHHHHHHHCTTG---GGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred             eeccccchhhhhhhccccccc---ccceEEEEeccHHHHHHHcCCCcc-CCccceeEEEEcCCCEEEEEEEcCCCCCCCH
Confidence            999999999999999876332   268999999999999999999754 3667899999999999999998877788899


Q ss_pred             HHHHHHHhhcc
Q psy16151        212 DETLRLVQAFH  222 (299)
Q Consensus       212 ~evl~~l~~L~  222 (299)
                      +++++.|++|+
T Consensus       158 ~evl~~l~alq  168 (169)
T d2bmxa1         158 DEVLRVLDALQ  168 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999886

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=2.9e-33  Score=231.72  Aligned_cols=163  Identities=44%  Similarity=0.810  Sum_probs=145.5

Q ss_pred             CCCCCCCCcEEeeeeCCC---CceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         66 LVSKPAPFWQGTAVVDGQ---LKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~---G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      .+|++||||+|+++ +++   ++.++|+|++|| +|||+|||++|||.|+.|++.|++.+++|+++|++|++||.|+.+.
T Consensus         2 lVG~~APdF~l~~~-~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~   80 (170)
T d1zofa1           2 VVTKLAPDFKAPAV-LGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (170)
T ss_dssp             CTTSBCCCCEEEEE-CTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCCcCcccc-cCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhh
Confidence            57999999999976 332   257999999997 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +.+|.+..+....+.+++||+++|++.+++++||+.... +.+.|++||||++|+|++.+.++...+++.+++++.|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~-~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1          81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccc-cceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            999999887776667899999999999999999997653 6678999999999999999888888889999999999999


Q ss_pred             cCCCCCCcc
Q psy16151        222 HDPLRTGAI  230 (299)
Q Consensus       222 ~~~~~g~~v  230 (299)
                      +....++.+
T Consensus       160 q~~~~~~~~  168 (170)
T d1zofa1         160 LHFEEHGEV  168 (170)
T ss_dssp             HHHHSSCCC
T ss_pred             hhHHhcCCc
Confidence            876555544

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-33  Score=238.65  Aligned_cols=188  Identities=27%  Similarity=0.361  Sum_probs=157.7

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      |.+|++||+|+|+   +.+|+ ++|+|++| ||+||+||+++|||+|+.|++.|++.+++|+++|++|++||+|+.+++.
T Consensus         1 L~VGd~APdF~l~---~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~   76 (220)
T d1prxa_           1 LLLGDVAPNFEAN---TTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL   76 (220)
T ss_dssp             CCTTCBCCCCEEE---ETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             CCCCCCCCCcEee---cCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchh
Confidence            5789999999998   44775 99999988 7999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccc---cCCCCccceeeeecCchHHHHHhCCcccCC------CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151        144 AWVNTPRK---EGGLGKLKIPLLSDLTHKISLDYGVYLSDQ------GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       144 ~~~~~~~~---~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~------g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~ev  214 (299)
                      +|.+..+.   ..+..+++||+++|++++++++||+..+..      +.+.|++||||++|+|++...++...+++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEi  156 (220)
T d1prxa_          77 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEI  156 (220)
T ss_dssp             HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHH
T ss_pred             hhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHH
Confidence            99876532   333457999999999999999999987653      246799999999999999999999999999999


Q ss_pred             HHHHhhccCCCC----CCccccccceeccceechHHHHHHHhhcCc
Q psy16151        215 LRLVQAFHDPLR----TGAINGLSLLVIGLFQVTEKTCDILEDHGV  256 (299)
Q Consensus       215 l~~l~~L~~~~~----g~~vn~ast~~~~~i~~s~~~~~~L~~~~~  256 (299)
                      ++.+++||....    ..+.|.|+..+.-...++.+-++.....|+
T Consensus       157 Lr~l~alq~~~~~~~~~PanW~pGd~~~~~p~~~~~~~~~~~~~~~  202 (220)
T d1prxa_         157 LRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGV  202 (220)
T ss_dssp             HHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCTTCC
T ss_pred             HHHHHHHhhhhcCCcCcCCCCCCCCceecCCCCCHHHHHHhccCCC
Confidence            999999997544    333344466555444556666666665554

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.98  E-value=1.2e-32  Score=238.15  Aligned_cols=185  Identities=31%  Similarity=0.495  Sum_probs=151.1

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      .+|++||+|+++   +.+| .++++|+   +|||+||+||+++|||+|+.|++.|++++++|+++|++||+||+|+.+++
T Consensus         2 lIGd~aPdF~l~---t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh   77 (237)
T d2zcta1           2 LIGERFPEMEVT---TDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH   77 (237)
T ss_dssp             CTTSBCCCEEEE---ETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEE---cCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHH
Confidence            489999999998   4577 4788876   89999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC-CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g-~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+|.+..+...+ ..++||+++|++++++++|||.....+ ...|++||||++|+|+++..++...+++.+++++.|++|
T Consensus        78 ~~w~~~~~~~~~-~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1          78 IKWKEWIERHIG-VRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHHHHHHHHHHC-CCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHhhhhhhhcc-cccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            999987543322 378999999999999999999765443 577999999999999999999999999999999999999


Q ss_pred             cCCCCC---Ccccc-c----cceeccceechHHHHHHHhhcC
Q psy16151        222 HDPLRT---GAING-L----SLLVIGLFQVTEKTCDILEDHG  255 (299)
Q Consensus       222 ~~~~~g---~~vn~-a----st~~~~~i~~s~~~~~~L~~~~  255 (299)
                      |.....   .++|| +    +..+.-...++.+-++.+.+.|
T Consensus       157 Q~~~~~~~~~Pa~W~~~~~~g~~~~~~~~~~~~~~~~~~~~~  198 (237)
T d2zcta1         157 KLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMESG  198 (237)
T ss_dssp             HHHHHHTCBBCTTTTSBTTTBTCEECCCCCSHHHHHHHHHHT
T ss_pred             hhhccCCcCCcCCCCCCCCCCCCEEeCCCCCHHHHHHhccCC
Confidence            965442   22333 2    3344444456777777766644

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.98  E-value=6.3e-33  Score=237.24  Aligned_cols=183  Identities=20%  Similarity=0.315  Sum_probs=153.2

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL  143 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~  143 (299)
                      +.+|++||+|++++. +.+| .++|+|+ +|||+||+|||+.|||+|++|+..|++.+++|+++|++|+|||.|+.+++.
T Consensus         2 i~iGd~aPdF~l~~~-~~~g-~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~   79 (219)
T d1xcca_           2 YHLGATFPNFTAKAS-GIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHD   79 (219)
T ss_dssp             CCTTCBCCCCEECBT-TCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             CcCCCCCCCcEeecc-CCCC-cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHh
Confidence            578999999999843 3334 5899997 789999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      +|.+..++..+..+++||+++|++++++++||+..+..+      .+.|++||||++|+|++...++...+++.+++++.
T Consensus        80 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~  159 (219)
T d1xcca_          80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRV  159 (219)
T ss_dssp             HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHH
Confidence            999998777666689999999999999999999876422      35689999999999999998999999999999999


Q ss_pred             HhhccCCCCCCc----cccccceeccceechHHHHH
Q psy16151        218 VQAFHDPLRTGA----INGLSLLVIGLFQVTEKTCD  249 (299)
Q Consensus       218 l~~L~~~~~g~~----vn~ast~~~~~i~~s~~~~~  249 (299)
                      |++||.....+.    .|.++..+.....++.+-++
T Consensus       160 l~aLQ~~~~~~~~~PanW~~G~~~~~~p~~~~~~~~  195 (219)
T d1xcca_         160 LKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEIS  195 (219)
T ss_dssp             HHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHH
T ss_pred             HHHHHHHHhCCCCcCCCCCCCCceeeCCCCChHHHH
Confidence            999997665433    33335444433334433333

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.8e-31  Score=216.87  Aligned_cols=149  Identities=30%  Similarity=0.483  Sum_probs=135.9

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH  142 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~  142 (299)
                      +|++|+++|+|+|+   |.+|++++|+|++|| ++||+||+++|||+|+.+++.|++++++++++|++|++||.|+++.+
T Consensus         1 ml~vG~~aPdF~l~---d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~   77 (153)
T d1xvwa1           1 MLNVGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTH   77 (153)
T ss_dssp             CCCTTSBCCCCEEE---CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHH
T ss_pred             CCCCcCCCcCeEEE---CCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHH
Confidence            47899999999998   779999999999995 88888888999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCCCCccceeeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ++|.+.+       +++||+++|.  ++.++++||+.....|.+.|++||||++|+|++.+.......++..++.+.+++
T Consensus        78 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~a  150 (153)
T d1xvwa1          78 KIWATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  150 (153)
T ss_dssp             HHHHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHhhhh-------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHh
Confidence            9999887       8899999875  588999999987777778899999999999999988777777888899999888


Q ss_pred             cc
Q psy16151        221 FH  222 (299)
Q Consensus       221 L~  222 (299)
                      |+
T Consensus       151 L~  152 (153)
T d1xvwa1         151 LT  152 (153)
T ss_dssp             TC
T ss_pred             hc
Confidence            75

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=1.5e-30  Score=215.10  Aligned_cols=155  Identities=45%  Similarity=0.885  Sum_probs=139.9

Q ss_pred             CCCCcEEeeee-CCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151         70 PAPFWQGTAVV-DGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN  147 (299)
Q Consensus        70 ~aPdF~L~~~~-~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~  147 (299)
                      +||||+|+++. |.++++++|+|++| |+|||+|||++|||.|..|++.|++.+++|++.|++||+||.|+.+.+++|.+
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~   80 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK   80 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence            58999999764 45678999999998 69999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCC
Q psy16151        148 TPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPL  225 (299)
Q Consensus       148 ~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~  225 (299)
                      ..+....+.+++||+++|+++.++++||+.... +.+.|++||||++|+|++.+.+....+++.+++++.|++|+...
T Consensus        81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~-~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~  157 (170)
T d2h01a1          81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHE  157 (170)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT-TEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccccCCceeEcCccHHHHHhCCcccc-ccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhhh
Confidence            876666666899999999999999999997543 56779999999999999999888888899999999999997543

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=6.2e-31  Score=214.91  Aligned_cols=149  Identities=26%  Similarity=0.449  Sum_probs=132.7

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ++++|++||+|+|+   |.+|+.++|+|+  +||++||+||+++|||+|+.+++.++++++++++.++.|++||.|+++.
T Consensus         1 mi~vG~~aPdF~L~---~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~   77 (160)
T d2cx4a1           1 LVELGEKAPDFTLP---NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC   77 (160)
T ss_dssp             CCCTTSBCCCCEEC---CTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHH
T ss_pred             CCcCCCCCcCeEeE---CCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhh
Confidence            37899999999998   779999999998  7999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----CCceeEEEEEeCCCcEEEEEeccCCC-CCCHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----GHTLRGLFIIDRNGVLRQITMNDLPV-GRSVDETLR  216 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g~~~p~~~lID~dG~I~~~~~~~~~~-g~~~~evl~  216 (299)
                      +++|.+..       +++|++++|++.+++++||+.....    ..+.|++||||++|+|++++.+.... ..+.+++++
T Consensus        78 ~~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~  150 (160)
T d2cx4a1          78 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVR  150 (160)
T ss_dssp             HHHHHHHH-------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHH
T ss_pred             hhhhcccc-------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence            99999876       8999999999999999999976432    13468899999999999998765444 347899999


Q ss_pred             HHhhcc
Q psy16151        217 LVQAFH  222 (299)
Q Consensus       217 ~l~~L~  222 (299)
                      .++++.
T Consensus       151 ~l~~l~  156 (160)
T d2cx4a1         151 EANKIA  156 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            988764

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.1e-28  Score=207.05  Aligned_cols=156  Identities=14%  Similarity=0.093  Sum_probs=125.2

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------  137 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------  137 (299)
                      .+++|+++|||+|+   |.+|+.++|+||+||+|||+|| ++|||+|+.++|.|.+++++|++ ++.+++|+++      
T Consensus         5 ~l~vG~~aPdF~l~---d~~G~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~   79 (187)
T d2cvba1           5 ELPLESPLIDAELP---DPRGGRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYP   79 (187)
T ss_dssp             CCCTTCBCCCCEEE---CTTSCEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCG
T ss_pred             CCCCCCccCccEee---cCCCCEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeecccccccc
Confidence            57899999999998   6699999999999999999999 99999999999999999999986 6899998753      


Q ss_pred             --CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCC----CCH
Q psy16151        138 --SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVG----RSV  211 (299)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g----~~~  211 (299)
                        +.+..+++.+..       +++||++.|+++.+++.||+.      ..|++||||++|+|+|+...+...+    ...
T Consensus        80 ~~~~e~~~~~~~~~-------~~~~p~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~  146 (187)
T d2cvba1          80 EDAPEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS  146 (187)
T ss_dssp             GGSHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred             ccchHHHHHHHHHh-------CCcceeeechhhhhccccccc------ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCH
Confidence              245566666655       899999999999999999996      5799999999999999876332221    223


Q ss_pred             HHHHHHHhhccCCCCCCccccccceeccc
Q psy16151        212 DETLRLVQAFHDPLRTGAINGLSLLVIGL  240 (299)
Q Consensus       212 ~evl~~l~~L~~~~~g~~vn~ast~~~~~  240 (299)
                      .++.++|+++..   |.++..+.|...||
T Consensus       147 ~~L~~Ai~~ll~---g~~~~~~~t~~~GC  172 (187)
T d2cvba1         147 HDLEAAIEALLR---GEEPPLKEAPAIGC  172 (187)
T ss_dssp             CHHHHHHHHHHT---TCCCCSSCCCCCSE
T ss_pred             HHHHHHHHHHHc---CCCCCccccCCCCc
Confidence            457777776654   55555554444444

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8.9e-29  Score=203.30  Aligned_cols=143  Identities=22%  Similarity=0.292  Sum_probs=120.3

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+++|++||+|+|+   +.+|+.++|+||+||++||+||++.|||+|..+++.|++++.+++  ++++++||.|+++
T Consensus        14 ~g~~~~vG~~APdF~L~---~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~   88 (164)
T d1qxha_          14 ANSIPQAGSKAQTFTLV---AKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISADLPF   88 (164)
T ss_dssp             CSCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESSCHH
T ss_pred             CCCcCCCCCCCCCeEEE---CCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcCCHH
Confidence            34468999999999998   779999999999999999999999999999999999999988764  7999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeee--ecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLL--SDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDET  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l--~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~ev  214 (299)
                      .+++|.+..       ++.|+++  .|++.+++++||+....   .|...|++||||++|+|++.++.. ....++.+++
T Consensus        89 ~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd~d~~  161 (164)
T d1qxha_          89 AQSRFCGAE-------GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAA  161 (164)
T ss_dssp             HHTTCCSST-------TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHH
T ss_pred             HHHHHHHHh-------CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCCHHHh
Confidence            998888775       6777766  46679999999997543   355679999999999999998744 3344566555


Q ss_pred             H
Q psy16151        215 L  215 (299)
Q Consensus       215 l  215 (299)
                      +
T Consensus       162 l  162 (164)
T d1qxha_         162 L  162 (164)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=1.8e-28  Score=201.33  Aligned_cols=148  Identities=24%  Similarity=0.354  Sum_probs=126.3

Q ss_pred             ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151         62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT  141 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~  141 (299)
                      ...+++|++||+|+|+   +.+|++++|+||+||++||.||++.|||.|..+++.|.+.+++++  ++.+++||.|+++.
T Consensus        13 g~~l~vG~~aPdF~L~---~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~   87 (163)
T d1psqa_          13 GKQLQVGDKALDFSLT---TTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDLPFA   87 (163)
T ss_dssp             SCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSCHHH
T ss_pred             CCCCCCCCCCCCeEEE---CCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEeccHHH
Confidence            4578999999999998   779999999999999999999999999999999999999888885  78999999999999


Q ss_pred             HHHHhhcccccCCCCccce-eeeec-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHHHHH
Q psy16151        142 HLAWVNTPRKEGGLGKLKI-PLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETLRLV  218 (299)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~-p~l~D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~~l  218 (299)
                      +.+|.+..       +..+ +++.| .+..+++.||+.....+...|++||||++|+|++.+... ....++.+++++.+
T Consensus        88 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~al  160 (163)
T d1psqa_          88 QKRWCGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAA  160 (163)
T ss_dssp             HHHHHHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             HHHHHHHc-------CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHH
Confidence            99999876       3333 33434 568999999998776666778999999999999998644 34455789999988


Q ss_pred             hhc
Q psy16151        219 QAF  221 (299)
Q Consensus       219 ~~L  221 (299)
                      ++|
T Consensus       161 k~L  163 (163)
T d1psqa_         161 KAL  163 (163)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            765

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=6e-28  Score=198.71  Aligned_cols=148  Identities=22%  Similarity=0.323  Sum_probs=120.0

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ....+++|++||+|+|+   +.+|++++|+||+||++||+||++.|||+|..+++.|++   ++++.|++|++||.|+++
T Consensus        13 ~g~~p~iG~~aP~F~L~---~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~Is~d~~~   86 (166)
T d1xvqa_          13 VGELPAVGSPAPAFTLT---GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPF   86 (166)
T ss_dssp             SSCCCCTTSBCCCCEEE---CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEEEESSCHH
T ss_pred             CCCCCCCcCCCCCeEEE---CCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccccccchHH
Confidence            34568999999999998   779999999999999999999999999999999988765   456679999999999999


Q ss_pred             hHHHHhhcccccCCCCccceeee-ecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLL-SDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETL  215 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l-~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl  215 (299)
                      ++.+|.+..       +..++.+ .|....+++.||+....   .|...|++||||++|+|++.+... .....+.++++
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il  159 (166)
T d1xvqa_          87 AQKRFCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAAL  159 (166)
T ss_dssp             HHTTCC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHH
T ss_pred             HHHHHHHHh-------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHH
Confidence            988888765       6666665 45668899999997654   245678999999999999987643 44556899999


Q ss_pred             HHHhhc
Q psy16151        216 RLVQAF  221 (299)
Q Consensus       216 ~~l~~L  221 (299)
                      +.|++.
T Consensus       160 ~aL~a~  165 (166)
T d1xvqa_         160 AALGAT  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998864

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.3e-29  Score=201.85  Aligned_cols=148  Identities=22%  Similarity=0.278  Sum_probs=123.9

Q ss_pred             cccCCCCCCCCcEEeeeeCCCCceEEcCcc--CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151         63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDY--YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF  140 (299)
Q Consensus        63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~--~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~  140 (299)
                      ..|++|++||+|+|+   |.+|+.++|+++  +|++||++||+++|||+|..+++.|++.+++|++ ++.+++||.|+++
T Consensus         3 ~~L~vG~~aP~f~L~---~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~   78 (156)
T d2a4va1           3 NELEIGDPIPDLSLL---NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVT   78 (156)
T ss_dssp             TCCCTTCBCCSCEEE---CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHH
T ss_pred             ccCCCCCCCCCeEEE---CCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhh
Confidence            468999999999998   779999999999  5668888889999999999999999999999975 6779999999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC---CCCCHHHHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP---VGRSVDETLRL  217 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~---~g~~~~evl~~  217 (299)
                      .+++|.+++       +++||+++|++++++++||+.....+...|++||+ +||+|++++....+   ...+.+++++.
T Consensus        79 ~~~~f~~~~-------~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~-~dg~i~~~~~~~~~~~~~~~~~~evl~~  150 (156)
T d2a4va1          79 SQKKFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEV  150 (156)
T ss_dssp             HHHHHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred             hHHhhhccc-------CccceeccchHHHHHHHcCCCccccCCeeEEEEEE-ECCeEEEEEEEeCCCCCcchHHHHHHHH
Confidence            999999987       89999999999999999999765543333455555 79999999864322   23346778888


Q ss_pred             Hhhcc
Q psy16151        218 VQAFH  222 (299)
Q Consensus       218 l~~L~  222 (299)
                      +++|+
T Consensus       151 lk~l~  155 (156)
T d2a4va1         151 AEKFK  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            88775

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=7.5e-28  Score=197.74  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=122.8

Q ss_pred             ccccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151         60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH  139 (299)
Q Consensus        60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~  139 (299)
                      .....+++|++||+|+|+   |.+|++++|+||+||++||+||++.|||.|..|++.|++.+++|+  |+.|++||.|++
T Consensus        11 ~~g~~p~vG~~APdF~L~---d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~   85 (164)
T d1q98a_          11 VGGHFPQVGEIVENFILV---GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLP   85 (164)
T ss_dssp             EESCCCCTTCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCH
T ss_pred             cCCCCCCCCCCCCCcEEE---CCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcH
Confidence            345578999999999997   779999999999999999999999999999999999999999996  799999999999


Q ss_pred             HhHHHHhhcccccCCCCccc-eeeeec-CchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccC-CCCCCHHH
Q psy16151        140 FTHLAWVNTPRKEGGLGKLK-IPLLSD-LTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDL-PVGRSVDE  213 (299)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~p~l~D-~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~-~~g~~~~e  213 (299)
                      +.+++|.+..       ++. ++.+.| .+..+++.||+....   .|...|++||||++|+|+++++... ...++.++
T Consensus        86 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd~~~  158 (164)
T d1q98a_          86 FAQARFCGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEA  158 (164)
T ss_dssp             HHHTTCTTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHH
T ss_pred             HHHHHHHHHh-------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCCCHHH
Confidence            9999998876       554 445554 357899999997654   2556799999999999999987543 33456777


Q ss_pred             HHHHH
Q psy16151        214 TLRLV  218 (299)
Q Consensus       214 vl~~l  218 (299)
                      +++.|
T Consensus       159 ~l~~L  163 (164)
T d1q98a_         159 ALAVL  163 (164)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            77654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=3.7e-26  Score=181.13  Aligned_cols=133  Identities=16%  Similarity=0.117  Sum_probs=115.1

Q ss_pred             CCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CHHhHHHHh
Q psy16151         68 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAWV  146 (299)
Q Consensus        68 G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~~~~~~~~  146 (299)
                      |+.+|+|+++   +.+|+++++++++||++||+|| ++|||+|..++|.|.++++++  .++.+++|+.+ +.+..++|.
T Consensus         1 ~d~~~~f~~~---~~~G~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~   74 (134)
T d1lu4a_           1 ADERLQFTAT---TLSGAPFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFV   74 (134)
T ss_dssp             CGGGGCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHH
T ss_pred             CCCCCcceeE---CCCCCEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhh
Confidence            6889999998   5699999999999999999999 999999999999999999876  47999999975 567778888


Q ss_pred             hcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        147 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       147 ~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +++       ++.||++.|+++.+++.||+.      ..|++||||++|+|++++.  .......+++.+.|.+|
T Consensus        75 ~~~-------~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~v~~--~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          75 SKY-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTSTFVNN--PTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HHH-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEEEECC--SSSCCCHHHHHHHHHHC
T ss_pred             hhh-------ccccceeeCchHHHHHHcCCC------cCCEEEEEeCCCeEEEEec--cCCCCCHHHHHHHHHcC
Confidence            876       889999999999999999986      5799999999999998752  22334678888888764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.4e-26  Score=182.75  Aligned_cols=122  Identities=22%  Similarity=0.351  Sum_probs=110.8

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CHHhHHHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTHLAW  145 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~~~~~~~  145 (299)
                      .|+++|+|++.   +.+|+.+++++++||++||+|| ++|||+|..+++.++++++++.++++.+++|+.+ +.+..++|
T Consensus         1 ~G~~~P~f~l~---~~~G~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~   76 (137)
T d1st9a_           1 EGSDAPNFVLE---DTNGKRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF   76 (137)
T ss_dssp             CCEECCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred             CcCcCCCeEEE---CCCcCEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHH
Confidence            38999999998   6699999999999999999999 8999999999999999999999999999999975 57788888


Q ss_pred             hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC
Q psy16151        146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~  205 (299)
                      .+++       +++||++.|.++++++.||+.      ..|++||||++|+|++++.+..
T Consensus        77 ~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~  123 (137)
T d1st9a_          77 MKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTM  123 (137)
T ss_dssp             HHHT-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCC
T ss_pred             HHHc-------CCCccccccccchhhhhhhcc------ccceEEEECCCCEEEEEEECCC
Confidence            8876       889999999999999999996      4699999999999999985543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.91  E-value=2.7e-24  Score=178.01  Aligned_cols=142  Identities=20%  Similarity=0.232  Sum_probs=117.7

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--CHHhH
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTH  142 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--~~~~~  142 (299)
                      ...+.++|+|+|+   |.+|+.++|++++||++||+|| ++|||.|..+++.++++++++.+.++.|++|++|  +++..
T Consensus        30 ~~~~~~~Pdf~l~---d~~G~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~  105 (176)
T d1jfua_          30 ASAPLKLPDLAFE---DADGKPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKP  105 (176)
T ss_dssp             CCSCCBCCCCEEE---CTTSCEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHH
T ss_pred             cCCCCcCCCeEEE---CCCcCEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhh
Confidence            4457789999998   7799999999999999999999 9999999999999999999999999999999976  46677


Q ss_pred             HHHhhcccccCCCCccce-eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        143 LAWVNTPRKEGGLGKLKI-PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++|.+++       ++.+ +++.|.+..+.+.|+......  ..|++||||++|+|++++.+...  .+.+++++.|++|
T Consensus       106 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~v~--~~P~~~lID~~G~I~~~~~G~~~--~~~~e~~~~l~al  174 (176)
T d1jfua_         106 KTFLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRAL--GMPTSVLVDPQGCEIATIAGPAE--WASEDALKLIRAA  174 (176)
T ss_dssp             HHHHHHT-------TCCTTCCEECTTCHHHHHHHTTTCCS--SSSEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHHH
T ss_pred             hhhHhhh-------CCcceeeeecchhHHHHHHhhhccCC--CCCeEEEEcCCCEEEEEEECCCC--CChHHHHHHHHHh
Confidence            8888775       5665 578888888888877654322  35899999999999999865443  2447888888876

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.9e-24  Score=172.99  Aligned_cols=136  Identities=13%  Similarity=0.163  Sum_probs=112.6

Q ss_pred             cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC------
Q psy16151         65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------  138 (299)
Q Consensus        65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~------  138 (299)
                      +++|+++|+|++.+. ..+|+.+++++++||++||+|| ++|||+|..++|.|+++++++++ ++.+|+|+.+.      
T Consensus         1 ~k~g~~aP~~~~~~~-~~ng~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~   77 (143)
T d2b5xa1           1 MKLRQPMPELTGEKA-WLNGEVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLD   77 (143)
T ss_dssp             CCTTCBCCCCCCCSE-EESCCCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSS
T ss_pred             CCCCCcCCCCcCCcc-CcCCeEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccc
Confidence            478999999997642 2368899999999999999999 99999999999999999999986 79999998753      


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV  218 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l  218 (299)
                      .+..++|.+.+       +++||++.|.++.+++.|++.      ..|++||||++|+|++++.+..    ..+++.+.+
T Consensus        78 ~~~~~~~~~~~-------~~~~p~~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l  140 (143)
T d2b5xa1          78 PGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKRV  140 (143)
T ss_dssp             HHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHHHHHHH
T ss_pred             hhhhhhHHHhh-------ccCccccccCccchHHHcCCC------cCCEEEEECCCCEEEEEEECCC----CHHHHHHHH
Confidence            44466777765       889999999999999999986      5699999999999999986532    334555555


Q ss_pred             hh
Q psy16151        219 QA  220 (299)
Q Consensus       219 ~~  220 (299)
                      ++
T Consensus       141 ~~  142 (143)
T d2b5xa1         141 NR  142 (143)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.9e-24  Score=174.15  Aligned_cols=148  Identities=20%  Similarity=0.285  Sum_probs=118.5

Q ss_pred             ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCch-hhHHHHHHHHHHHhhcCcE-EEEEeCCCHH
Q psy16151         64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCP-TEILAFNDRLEEFHQINTE-VVAASVDSHF  140 (299)
Q Consensus        64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~-~~~~~l~~l~~~~~~~gv~-vi~Vs~d~~~  140 (299)
                      ++++|+.+|+|+|.+  +.+|+.++|+|+ +||+|||+|+|+.|||.|. .+++.+.+.+++|+++|+. |+++|+|++.
T Consensus         2 pikVGd~aP~f~l~~--~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~   79 (161)
T d1hd2a_           2 PIKVGDAIPAVEVFE--GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF   79 (161)
T ss_dssp             CCCTTCBCCCCEEEC--SSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred             CCCCCCcCCCeEEEe--cCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchh
Confidence            588999999999962  456899999996 8999999999999999996 4788899999999999875 6789999999


Q ss_pred             hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151        141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDET  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~ev  214 (299)
                      .+.+|.+... .    ...|++++|++++++++||+..+..+      ...+++++|++||+|++++......+.+....
T Consensus        80 ~~~~~~~~~~-~----~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~a  154 (161)
T d1hd2a_          80 VTGEWGRAHK-A----EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLA  154 (161)
T ss_dssp             HHHHHHHHTT-C----TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSH
T ss_pred             hhhhhhhhcc-c----ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCcH
Confidence            9999998752 1    45789999999999999999876543      12344556666999999987666565554333


Q ss_pred             HHHH
Q psy16151        215 LRLV  218 (299)
Q Consensus       215 l~~l  218 (299)
                      .+.|
T Consensus       155 ~~vL  158 (161)
T d1hd2a_         155 PNII  158 (161)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=2.4e-23  Score=164.49  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=105.8

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-CCHHhHHHHhhccc
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWVNTPR  150 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-d~~~~~~~~~~~~~  150 (299)
                      +||+++   |.+|+++++++++||++||+|| ++|||+|+.++|.|.+++++++  ++.+++|+. |+.+...+|.+.+ 
T Consensus         6 ~df~~~---~~~G~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~-   78 (134)
T d1zzoa1           6 LQFSAK---TLDGHDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKY-   78 (134)
T ss_dssp             GCCEEE---BTTSCEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHT-
T ss_pred             cceeEE---cCCCCEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhc-
Confidence            479998   5689999999999999999999 9999999999999999999886  467777776 4677777888765 


Q ss_pred             ccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        151 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       151 ~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                            +. .||++.|+++++++.||+.      ..|++||||++|+|++.. +    ..+.+++.+.|+.|
T Consensus        79 ------~~~~~~~l~D~~~~~~~~~~v~------~~P~~~iiD~~G~i~~~~-g----~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          79 ------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVDVVR-G----RMSQDELTRRVTAL  133 (134)
T ss_dssp             ------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEE-S----CCCHHHHHHHHHHH
T ss_pred             ------CCcceeEEeeccchHHHhcCCC------ccCeEEEECCCCeEEEEE-C----CCCHHHHHHHHHhh
Confidence                  44 5899999999999999986      568999999999998753 2    23567788877765

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.88  E-value=3.4e-23  Score=165.33  Aligned_cols=126  Identities=11%  Similarity=0.191  Sum_probs=105.9

Q ss_pred             CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC------HHhHHHHhhcccccCC
Q psy16151         81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS------HFTHLAWVNTPRKEGG  154 (299)
Q Consensus        81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~------~~~~~~~~~~~~~~~~  154 (299)
                      +.+|++++|++++||++||+|| ++|||+|+.++|.|++++++++..++.+++|+.+.      .....+|....     
T Consensus        10 ~~~~~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~-----   83 (143)
T d2fy6a1          10 TADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL-----   83 (143)
T ss_dssp             ETTSCBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS-----
T ss_pred             CCCCCEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhc-----
Confidence            6699999999999999999999 99999999999999999999999999999998753      22234444432     


Q ss_pred             CCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        155 LGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       155 ~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                       +...||++.|+++.+++.||+.      ..|++||||++|+|+++..+..    +.+++.+.++.+.+
T Consensus        84 -~~~~~~~~~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~----~~~~~~~~l~~~~a  141 (143)
T d2fy6a1          84 -NYPKLPVVTDNGGTIAQSLNIS------VYPSWALIGKDGDVQRIVKGSI----NEAQALALIRDPNA  141 (143)
T ss_dssp             -CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTTS
T ss_pred             -CCcccccccccchHHHHHcCCC------ccCEEEEECCCCEEEEEEECCC----CHHHHHHHHHHHhc
Confidence             2568999999999999999996      5699999999999999985543    46788888877654

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.88  E-value=2.6e-22  Score=163.98  Aligned_cols=149  Identities=20%  Similarity=0.285  Sum_probs=118.8

Q ss_pred             ccccCCCCCCCCcEEeeee-CCCCceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCc-EEEEEeCC
Q psy16151         62 ICFKLVSKPAPFWQGTAVV-DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINT-EVVAASVD  137 (299)
Q Consensus        62 ~~~l~~G~~aPdF~L~~~~-~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv-~vi~Vs~d  137 (299)
                      |+++++|+++|+|+|..+. +.++++++|+|+ +||+|||+|+|+.|+|.|.. +++...+..++++++|. +|++||+|
T Consensus         1 M~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd   80 (162)
T d1tp9a1           1 MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             CCCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc
Confidence            4579999999999997552 445678999985 99999999999999999975 56777777888887775 79999999


Q ss_pred             CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC-----CceeEEEEEeCCCcEEEEEeccCCC-C-CC
Q psy16151        138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-----HTLRGLFIIDRNGVLRQITMNDLPV-G-RS  210 (299)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g-----~~~p~~~lID~dG~I~~~~~~~~~~-g-~~  210 (299)
                      ++..+.+|..... .    ...+++++|++++++++||+.....+     .+.|.+|||| ||+|++++...... . .+
T Consensus        81 ~~~~~~~~~~~~~-~----~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s~  154 (162)
T d1tp9a1          81 DPFVMKAWAKSYP-E----NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSS  154 (162)
T ss_dssp             CHHHHHHHHHTCT-T----CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSCS
T ss_pred             chhhhhhhhhhcc-c----ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccCC
Confidence            9999999998862 1    45699999999999999998765432     2468999999 99999998644322 1 24


Q ss_pred             HHHHHH
Q psy16151        211 VDETLR  216 (299)
Q Consensus       211 ~~evl~  216 (299)
                      .+++++
T Consensus       155 ae~vLk  160 (162)
T d1tp9a1         155 AEDILK  160 (162)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            555554

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1e-21  Score=161.77  Aligned_cols=148  Identities=11%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCC-CchhhHHHHHHHHHHHhhc--CcEEEEEeCCC----
Q psy16151         66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF-VCPTEILAFNDRLEEFHQI--NTEVVAASVDS----  138 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp-~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~----  138 (299)
                      .++.++|+|+|.   |.+|++++|++|+||++||+|| .+||| .|+.+++.|.++++++++.  .+.+++||+|+    
T Consensus         6 p~~~~~p~F~l~---d~~G~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dt   81 (172)
T d1xzoa1           6 PLNYEVEPFTFQ---NQDGKNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK   81 (172)
T ss_dssp             CCCEECCCCEEE---CTTSCEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             CCCCcCCCeEEE---cCCCCEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccch
Confidence            467889999998   7799999999999999999999 55565 8999999999999999764  48899999864    


Q ss_pred             HHhHHHHhhcccccCCCCccceeeeecCchH-----HHHHhCCcccCC-C----CceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151        139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-----ISLDYGVYLSDQ-G----HTLRGLFIIDRNGVLRQITMNDLPVG  208 (299)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~-----~~~~~gv~~~~~-g----~~~p~~~lID~dG~I~~~~~~~~~~g  208 (299)
                      ++.+++|.+.+    ++....|.++.+.+.+     ..+.|++..... +    .+.+.+||||++|+|+..+.+  ...
T Consensus        82 p~~l~~y~~~~----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g--~~~  155 (172)
T d1xzoa1          82 PKQLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNG--VEN  155 (172)
T ss_dssp             HHHHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEES--SSS
T ss_pred             HHHHHHHHHHh----ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcC--CCC
Confidence            66677777665    2224567888876533     345566653321 1    134689999999999987643  233


Q ss_pred             CCHHHHHHHHhhccC
Q psy16151        209 RSVDETLRLVQAFHD  223 (299)
Q Consensus       209 ~~~~evl~~l~~L~~  223 (299)
                      ...+++++.|+++..
T Consensus       156 ~~~~~l~~dik~~~~  170 (172)
T d1xzoa1         156 TPYDDIISDVKSAST  170 (172)
T ss_dssp             CCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            457899999988753

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.86  E-value=1.8e-22  Score=161.42  Aligned_cols=118  Identities=14%  Similarity=0.228  Sum_probs=94.5

Q ss_pred             CCCCcEEeeee-----CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhHH
Q psy16151         70 PAPFWQGTAVV-----DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHL  143 (299)
Q Consensus        70 ~aPdF~L~~~~-----~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~~  143 (299)
                      +||+|+|+.+.     +.++..+++++++||++||+|| ++||++|+.++|.+.+++++   .++++++|+.+. .....
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~~~~~~~   77 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDAADNAR   77 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCCHHHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeeechHHHH
Confidence            57777776431     2234779999999999999999 99999999999999887544   478999998754 55566


Q ss_pred             HHhhcccccCCCCccce-eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151        144 AWVNTPRKEGGLGKLKI-PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND  204 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~  204 (299)
                      +|.+.+       +..| +++.|+++++++.||+.      ..|+++|||++|+|++++.+.
T Consensus        78 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~  126 (144)
T d1knga_          78 RFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGP  126 (144)
T ss_dssp             HHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESC
T ss_pred             HHHHHc-------CCccccccccccchhhhhcCcc------ccceEEEEcCCCeEEEEEeCC
Confidence            777665       4455 47889999999999986      579999999999999997543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.86  E-value=7.1e-22  Score=158.07  Aligned_cols=117  Identities=20%  Similarity=0.245  Sum_probs=93.0

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCC-HHhHHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDS-HFTHLA  144 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~-~~~~~~  144 (299)
                      +|+.+|+|++.   ..+|+.++|++|+||+|||+|| ++||++|+.++|.|+++++++. +.+++|++|+.|. .+...+
T Consensus         4 ~~k~~P~~~~~---~~~~~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~   79 (144)
T d1o73a_           4 LAKYLPGATNL---LSKSGEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHD   79 (144)
T ss_dssp             GGGTSCTTCCB---BCTTSCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHH
T ss_pred             cccCCCCceee---ccCCCEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHH
Confidence            57899999976   5577889999999999999999 9999999999999999999995 5689999999985 344455


Q ss_pred             HhhcccccCCCCccceeeeecC---chHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEE
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQIT  201 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~  201 (299)
                      +.+..       .. +.+..|.   ..++++.||+.      ..|++||||+| |+|+...
T Consensus        80 ~~~~~-------~~-~~~~~~~~~~~~~l~~~y~v~------~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          80 YYGKM-------PW-LALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHTTC-------SS-EECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred             HHHhc-------cc-cceeeeccchHHHHHHHcCCC------cCCEEEEEECCCCEEEeec
Confidence            55442       21 2222333   25689999996      57999999998 8998653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.7e-22  Score=156.98  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=91.4

Q ss_pred             EeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHhHHHHhhcccccC
Q psy16151         76 GTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFTHLAWVNTPRKEG  153 (299)
Q Consensus        76 L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~~~~~  153 (299)
                      |+++ |.+|+.++++++ +||+|||+|| ++||++|+.++|.|.+++    ++++.+++++.+. ......+..+.    
T Consensus         2 l~~l-d~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~----   71 (136)
T d1z5ye1           2 LESL-DNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKEL----   71 (136)
T ss_dssp             EEBS-SSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHH----
T ss_pred             Cccc-cCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHc----
Confidence            4545 778999999998 8999999999 999999999999998764    4689999999865 44455555543    


Q ss_pred             CCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC
Q psy16151        154 GLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL  205 (299)
Q Consensus       154 ~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~  205 (299)
                        +...++++.|+++.+++.||+.      ..|++||||++|+|++++.+..
T Consensus        72 --~~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~  115 (136)
T d1z5ye1          72 --GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL  115 (136)
T ss_dssp             --CCCCSEEEEESSCHHHHHHTCC------SBSEEEEECTTSCEEEEEESCC
T ss_pred             --CCccceeecccchhHHHhcccC------CcceEEEEcCCCEEEEEEEcCC
Confidence              1344567889999999999996      5799999999999999986543

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.84  E-value=4.1e-21  Score=153.69  Aligned_cols=112  Identities=15%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             cEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCC-HHhHHHHhhcccc
Q psy16151         74 WQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLAWVNTPRK  151 (299)
Q Consensus        74 F~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~-~~~~~~~~~~~~~  151 (299)
                      |+...+ +.+|+.++|++++||+|+|+|| ++||++|+.++|.|.++++++++ .+++|++|+.|. .+...++.+..  
T Consensus         9 ~~~~~l-~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~--   84 (144)
T d1i5ga_           9 YSTNVL-KGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM--   84 (144)
T ss_dssp             SCSEEE-ETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC--
T ss_pred             Cchhhc-cCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC--
Confidence            444433 6689999999999999999999 99999999999999999999986 479999999985 44445555543  


Q ss_pred             cCCCCccceeeeecCc--hHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEE
Q psy16151        152 EGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQI  200 (299)
Q Consensus       152 ~~~~~~~~~p~l~D~~--~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~  200 (299)
                           ++.++.+.|.+  ..+++.||+.      ..|+++|||+| |+|+..
T Consensus        85 -----~~~~~~~~d~~~~~~l~~~y~v~------~iPt~~lid~~~G~vi~~  125 (144)
T d1i5ga_          85 -----PWLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             -----SSEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEES
T ss_pred             -----CCCceeeEChHHHHHHHHHCCCC------CcCEEEEEeCCCCEEEee
Confidence                 55666666654  4588999996      57999999997 899743

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.83  E-value=2.7e-20  Score=151.96  Aligned_cols=146  Identities=19%  Similarity=0.347  Sum_probs=115.6

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHH-HHhhcCc-EEEEEeCCCHHhHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-EFHQINT-EVVAASVDSHFTHL  143 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~-~~~~~gv-~vi~Vs~d~~~~~~  143 (299)
                      .|+.+|||+|+...+.+.+.++|+|+ +||+|||+|+|+.++|.|..++..+...+. .+..+++ .+++++++++..+.
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~   82 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMN   82 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHH
Confidence            59999999999764544578999996 999999999999999999999877666544 3444444 57888888888888


Q ss_pred             HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEeccCCCCC-----CHHH
Q psy16151        144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITMNDLPVGR-----SVDE  213 (299)
Q Consensus       144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~~~~~~g~-----~~~e  213 (299)
                      +|.+...      ...+++++|+.+.++++||+.....  |   .+.|.+|||| ||+|++++......+.     +.++
T Consensus        83 a~~~~~~------~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae~  155 (163)
T d1nm3a2          83 AWKEDEK------SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDADT  155 (163)
T ss_dssp             HHHHHTT------CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHHH
T ss_pred             HHhhhhc------cCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCccccCHHH
Confidence            8887641      5679999999999999999976543  2   3678899999 9999999986554443     4677


Q ss_pred             HHHHHh
Q psy16151        214 TLRLVQ  219 (299)
Q Consensus       214 vl~~l~  219 (299)
                      +++.|.
T Consensus       156 vL~~L~  161 (163)
T d1nm3a2         156 MLKYLA  161 (163)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            777664

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.83  E-value=5.2e-21  Score=152.60  Aligned_cols=119  Identities=19%  Similarity=0.246  Sum_probs=95.0

Q ss_pred             CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCC-HHhHHH
Q psy16151         67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDS-HFTHLA  144 (299)
Q Consensus        67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~-~~~~~~  144 (299)
                      +|+.+|+|++.   +.+|++++|++++||+|||+|| ++|||+|..+++.|.++++++.. .++.+++|+.|+ .+....
T Consensus         2 ~~k~~P~~~~~---~~~g~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~   77 (144)
T d1o8xa_           2 LDKYLPGIEKL---RRGDGEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   77 (144)
T ss_dssp             GGGTSTTCCEE---EETTEEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             CCCCCCCcEeE---cCCCCEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence            36789999987   5589999999999999999999 99999999999999999999965 479999999986 344444


Q ss_pred             HhhcccccCCCCccceeee-ecCchHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEE
Q psy16151        145 WVNTPRKEGGLGKLKIPLL-SDLTHKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQIT  201 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l-~D~~~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~  201 (299)
                      +....  .    ...+++. .|...++++.|++.      ..|++||||++ |+|+...
T Consensus        78 ~~~~~--~----~~~~~~~~~d~~~~l~~~y~v~------~~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_          78 YFAKM--P----WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             HHTTC--S----SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred             HHhhc--c----ccceeeecccchhhHHHHcCCC------cCCEEEEEeCCCCEEEEEe
Confidence            44332  1    3344443 34557899999996      56999999998 7987543

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.1e-17  Score=134.84  Aligned_cols=145  Identities=15%  Similarity=0.175  Sum_probs=97.1

Q ss_pred             CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc---CcEEEEEeCCCHHhHHHHhhc
Q psy16151         72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI---NTEVVAASVDSHFTHLAWVNT  148 (299)
Q Consensus        72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~---gv~vi~Vs~d~~~~~~~~~~~  148 (299)
                      +||+|+   |.+|+++++++|+||++||+||++.||+.|......+..++..+...   .+.++.++.++.....+....
T Consensus         7 ~dF~l~---d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d2b7ka1           7 GPFHLE---DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKE   83 (169)
T ss_dssp             CCCEEE---ETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHH
T ss_pred             CCeEEE---eCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhh
Confidence            689997   77999999999999999999997777778888888888777777543   456666666543322222222


Q ss_pred             ccccCCCCccceeeeecC---chHHHHHhCCcccCC-------C---CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151        149 PRKEGGLGKLKIPLLSDL---THKISLDYGVYLSDQ-------G---HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL  215 (299)
Q Consensus       149 ~~~~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~~-------g---~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl  215 (299)
                      .....   ...+......   .....+.|++.....       +   .+.|++||||++|+|+.++..........++++
T Consensus        84 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~  160 (169)
T d2b7ka1          84 YLSDF---HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIV  160 (169)
T ss_dssp             HHTTS---CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHH
T ss_pred             hhccc---cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHH
Confidence            21221   3344444333   245666777654321       1   135789999999999999865555555667888


Q ss_pred             HHHhhcc
Q psy16151        216 RLVQAFH  222 (299)
Q Consensus       216 ~~l~~L~  222 (299)
                      +.|++|-
T Consensus       161 e~ik~ll  167 (169)
T d2b7ka1         161 EHVKSYV  167 (169)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            8888774

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.73  E-value=1.9e-17  Score=135.45  Aligned_cols=146  Identities=16%  Similarity=0.232  Sum_probs=113.5

Q ss_pred             CCCCCCCCcEEeeee-------CCCC-----ceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHH-hhcCc-
Q psy16151         66 LVSKPAPFWQGTAVV-------DGQL-----KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEF-HQINT-  129 (299)
Q Consensus        66 ~~G~~aPdF~L~~~~-------~~~G-----~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~-~~~gv-  129 (299)
                      ++|+.+|+.++....       +.+|     ++++++|+ +||+|||+++|++++|.|.. ++|.+.+.+++| +++|+ 
T Consensus         1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd   80 (179)
T d1xiya1           1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   80 (179)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc
Confidence            468889987763211       2222     56788886 99999999999999999976 699999999999 57787 


Q ss_pred             EEEEEeCCCHHhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEec
Q psy16151        130 EVVAASVDSHFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITMN  203 (299)
Q Consensus       130 ~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~~  203 (299)
                      +|++||+|++..+++|.+..       +. ...+++|++++++++||+..+..  |   .+.|.++||| ||+|.+.+..
T Consensus        81 ~I~~iSvnD~fv~~aW~~~~-------~~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE  152 (179)
T d1xiya1          81 DIYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE  152 (179)
T ss_dssp             EEEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred             eEEEEecCCHHHHHHHHhhc-------CcceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEe
Confidence            69999999999999999875       33 34889999999999999976542  2   2568899999 9999999875


Q ss_pred             cCCC---------CCCHHHHHHHHh
Q psy16151        204 DLPV---------GRSVDETLRLVQ  219 (299)
Q Consensus       204 ~~~~---------g~~~~evl~~l~  219 (299)
                      ..+.         ....+.+++.|+
T Consensus       153 ~~~~~~~~~dp~~vSsae~iL~~L~  177 (179)
T d1xiya1         153 KDKQHNIQTDPYDISTVNNVKEFLK  177 (179)
T ss_dssp             SSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHh
Confidence            4322         135677777665

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-17  Score=133.30  Aligned_cols=135  Identities=18%  Similarity=0.225  Sum_probs=98.1

Q ss_pred             CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC----cEEEEEeCCC----HHhHHH
Q psy16151         73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN----TEVVAASVDS----HFTHLA  144 (299)
Q Consensus        73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g----v~vi~Vs~d~----~~~~~~  144 (299)
                      ||+|.   |++|++++|+||+||++||+||++.|+..|+..++.+.++++++...+    +.++.++.++    .+...+
T Consensus         2 dF~L~---d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1wp0a1           2 PFSLT---THTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   78 (160)
T ss_dssp             CCEEE---ETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CeEEE---cCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHH
Confidence            69987   889999999999999999999955544579999999999999987654    4556666654    444555


Q ss_pred             HhhcccccCCCCccceeeeecCc---hHHHHHhCCcccCCC---------CceeEEEEEeCCCcEEEEEeccCCCCCCHH
Q psy16151        145 WVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG---------HTLRGLFIIDRNGVLRQITMNDLPVGRSVD  212 (299)
Q Consensus       145 ~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~~gv~~~~~g---------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~  212 (299)
                      +....       +..|..+.+..   ..+.+.|++......         ...+++|||||+|+|+.++.    ...+.+
T Consensus        79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~----~~~~~~  147 (160)
T d1wp0a1          79 YVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG----QNKRKG  147 (160)
T ss_dssp             HHHTT-------CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEE----TTCCHH
T ss_pred             HHhhc-------CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEEC----CCCCHH
Confidence            55444       66777766553   567888887544321         12367899999999998862    233567


Q ss_pred             HHHHHHhhc
Q psy16151        213 ETLRLVQAF  221 (299)
Q Consensus       213 evl~~l~~L  221 (299)
                      ++.+.|+++
T Consensus       148 ~i~~~I~~~  156 (160)
T d1wp0a1         148 EIAASIATH  156 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777655

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.2e-16  Score=129.62  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=90.6

Q ss_pred             CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--------HHhH
Q psy16151         71 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--------HFTH  142 (299)
Q Consensus        71 aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--------~~~~  142 (299)
                      +-||++.++  .+|++++|++|+||+|||++| |+||+.|..+.+.|++++++|+++|++|+++..|+        .+++
T Consensus         3 iydf~~~~l--~~g~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei   79 (184)
T d2f8aa1           3 VYAFSARPL--AGGEPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEI   79 (184)
T ss_dssp             GGGCEECBT--TCSSCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHH
T ss_pred             eeeeEEEEC--CCCCEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhh
Confidence            458888733  247889999999999999999 99999999999999999999999999999998763        5567


Q ss_pred             HHHhhcccccCCCCccceeeeecCc------hHHHH----HhCCcccCC-C-Ccee-----------------EEEEEeC
Q psy16151        143 LAWVNTPRKEGGLGKLKIPLLSDLT------HKISL----DYGVYLSDQ-G-HTLR-----------------GLFIIDR  193 (299)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~p~l~D~~------~~~~~----~~gv~~~~~-g-~~~p-----------------~~~lID~  193 (299)
                      .+|++..+. ..-.+..||+....+      ..+.+    ..+...... + ...|                 +.||||+
T Consensus        80 ~~f~~~~~~-~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr  158 (184)
T d2f8aa1          80 LNSLKYVRP-GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP  158 (184)
T ss_dssp             HHHHHHTSS-CTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT
T ss_pred             hhhhheecc-ccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECC
Confidence            777764311 111267888875332      23332    222111100 0 0001                 5799999


Q ss_pred             CCcEEEEEe
Q psy16151        194 NGVLRQITM  202 (299)
Q Consensus       194 dG~I~~~~~  202 (299)
                      +|+|+.++.
T Consensus       159 ~G~vv~rf~  167 (184)
T d2f8aa1         159 DGVPLRRYS  167 (184)
T ss_dssp             TSCEEEEEC
T ss_pred             CCCEEEEEC
Confidence            999999884

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=6e-10  Score=83.59  Aligned_cols=89  Identities=18%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      |++..||+|||+|| ++||++|....|.+.++.+++++ .+.++.|..|                            ...
T Consensus        20 l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d----------------------------~~~   69 (111)
T d1xwaa_          20 LTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVD----------------------------ECE   69 (111)
T ss_dssp             HHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT----------------------------TCH
T ss_pred             HHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEee----------------------------cCc
Confidence            55668999999999 99999999999999999998874 3445544443                            234


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      .+++.|+|.      ..|+.+++ ++|+++..+.+     ...+++.+.|+
T Consensus        70 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~I~  108 (111)
T d1xwaa_          70 DIAMEYNIS------SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIK  108 (111)
T ss_dssp             HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHH
T ss_pred             chhhcCCCc------cccEEEEE-ECCEEEEEEeC-----CCHHHHHHHHH
Confidence            567788886      56887777 79999888743     23455555554

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.3e-10  Score=88.62  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             cCccCCCeEEEEEEeC------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151         89 LSDYYGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL  162 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~  162 (299)
                      +++.+||+|+|+||..      +||++|+...|.+.++.+++.+ ++.++.|.+++..   +|                 
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~---~~-----------------   74 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW-----------------   74 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH-----------------
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCc---cc-----------------
Confidence            4456899999999943      4999999999999999888874 5889999987632   23                 


Q ss_pred             eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEE
Q psy16151        163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLR  198 (299)
Q Consensus       163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~  198 (299)
                       .|.+..+++.|+|.      ..|+.++++..+++.
T Consensus        75 -~d~~~~l~~~~~V~------~iPT~i~~~~g~~l~  103 (119)
T d1woua_          75 -KDPNNDFRKNLKVT------AVPTLLKYGTPQKLV  103 (119)
T ss_dssp             -HCTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred             -chhhhhHHHhCCeE------EEEEEEEEECCeEEe
Confidence             35567889999996      578999997555443

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=3.1e-10  Score=85.80  Aligned_cols=97  Identities=13%  Similarity=0.129  Sum_probs=63.9

Q ss_pred             EcCccCCCeEEEEEEeCCCCCCchhhHHHHH---HHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee
Q psy16151         88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS  164 (299)
Q Consensus        88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~---~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~  164 (299)
                      .+++.+||++||+|| ++||++|....|.+.   +..+.+.  ++.++.+..+..                        .
T Consensus        16 ~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~------------------------~   68 (117)
T d2fwha1          16 ALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAN------------------------D   68 (117)
T ss_dssp             HHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTC------------------------C
T ss_pred             HHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhcc--ceEEEecccccc------------------------h
Confidence            456678999999999 999999999888773   3333332  344444433211                        1


Q ss_pred             cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +.+.++++.|++.      ..|+++++|++|+++....  .....+.+++++.|+
T Consensus        69 ~~~~~l~~~~~v~------~~Pt~~~~~~~G~~~~~~~--~~G~~~~~~~~~~l~  115 (117)
T d2fwha1          69 AQDVALLKHLNVL------GLPTILFFDGQGQEHPQAR--VTGFMDAETFSAHLR  115 (117)
T ss_dssp             HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGC--BCSCCCHHHHHHHHH
T ss_pred             hHHHHHHhhhehh------hceEEEEEeCCCcEEeccc--ccccCCHHHHHHHHh
Confidence            1235678889986      5689999999999764321  112246677777765

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.88  E-value=6.4e-09  Score=76.90  Aligned_cols=88  Identities=11%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||+|| +.||++|....|.+.++.+++++ .+.++.|..|                            ....+++
T Consensus        16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~----------------------------~~~~~~~   65 (105)
T d1nw2a_          16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVD----------------------------ENPETTS   65 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETT----------------------------TCHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECC----------------------------CCcccHH
Confidence            4579999999 99999999999999999999875 5777666553                            2345677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|+|.      ..|+.+++ ++|+.+.++.+.    .+.+++.+.++.+
T Consensus        66 ~~~V~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~  103 (105)
T d1nw2a_          66 QFGIM------SIPTLILF-KGGEPVKQLIGY----QPKEQLEAQLADV  103 (105)
T ss_dssp             HTTCC------BSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTTT
T ss_pred             HCCcc------eeeEEEEE-ECCEEEEEEECC----CCHHHHHHHHHHH
Confidence            88886      56888888 689998887432    2456666666543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.87  E-value=1.2e-12  Score=106.15  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      -.+++++|++++|+|| ++|||+|+.++|.|.+++++++  ++.+..|++|.
T Consensus        47 ~~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~   95 (166)
T d1z6na1          47 ERLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGR   95 (166)
T ss_dssp             HHHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH
T ss_pred             HHHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECcc
Confidence            3577889999999999 9999999999999999999886  45666676653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.87  E-value=6.1e-09  Score=78.16  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+|+|+|| +.||++|....|.+.++.+++.+ .+.++.|.+|.                            ...+++
T Consensus        23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~   72 (112)
T d1ep7a_          23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAE   72 (112)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHH
T ss_pred             cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc----------------------------cccccc
Confidence            5789999999 99999999999999999999874 57777776642                            235778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      +|++.      ..|+++++ ++|+.+....+     .+.+++.+.++..
T Consensus        73 ~~~v~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~  109 (112)
T d1ep7a_          73 AAGIT------AMPTFHVY-KDGVKADDLVG-----ASQDKLKALVAKH  109 (112)
T ss_dssp             HHTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred             ccccc------CCCEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHHH
Confidence            89986      56887777 69999988743     3567777777654

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.86  E-value=1.7e-08  Score=74.93  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++++|.|| +.||++|....|.+.++.+++.+ .+.++.|.+|                            .+..++++
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d----------------------------~~~~l~~~   69 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEID----------------------------PNPTTVKK   69 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEEST----------------------------TCHHHHHH
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccc----------------------------ccHHHHHH
Confidence            478999998 99999999999999999888875 4677666553                            23467888


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |+|.      ..|+.+++. +|+++..+.+.    ...+++.+.++.
T Consensus        70 ~~I~------~~Pt~~~~~-~g~~v~~~~G~----~~~~~l~~~i~~  105 (108)
T d1thxa_          70 YKVE------GVPALRLVK-GEQILDSTEGV----ISKDKLLSFLDT  105 (108)
T ss_dssp             TTCC------SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             hccc------CCCEEEEEE-CCEEEEEEeCC----CCHHHHHHHHHH
Confidence            9986      568998885 89988877432    356677776654

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.85  E-value=1.1e-08  Score=75.92  Aligned_cols=87  Identities=10%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+|||.|| +.||++|....|.+.++..++.+ .+.++-|.+|                            ....+++
T Consensus        18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d----------------------------~~~~l~~   67 (107)
T d1dbya_          18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTD----------------------------ESPNVAS   67 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT----------------------------TCHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEecc----------------------------cchhHHH
Confidence            4679999999 99999999999999999888765 4566656543                            2356788


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +|++.      ..|+.+++ ++|+.+.+..+.    .+.+++.+.++.
T Consensus        68 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~  104 (107)
T d1dbya_          68 EYGIR------SIPTIMVF-KGGKKCETIIGA----VPKATIVQTVEK  104 (107)
T ss_dssp             HHTCC------SSCEEEEE-SSSSEEEEEESC----CCHHHHHHHHHH
T ss_pred             Hhccc------ceEEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHH
Confidence            89986      57898888 589999887432    245677776664

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.84  E-value=5.2e-09  Score=78.57  Aligned_cols=86  Identities=13%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      .|+++|+|| +.||++|....|.+.++.+++.  ++.++.|..|.                           ...++++.
T Consensus        25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~l~~~   74 (112)
T d1f9ma_          25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTLAKE   74 (112)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHHHHH
T ss_pred             CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------cchhhHhh
Confidence            468999998 9999999999999999999886  56676665432                           13467788


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      |++.      ..|+.+++ ++|+++..+.+     ...+++++.|++.
T Consensus        75 ~~V~------~~Pt~~~~-k~G~~v~~~~G-----~~~~~l~e~i~~~  110 (112)
T d1f9ma_          75 LGIR------VVPTFKIL-KENSVVGEVTG-----AKYDKLLEAIQAA  110 (112)
T ss_dssp             HCCS------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred             eeec------cCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHc
Confidence            9986      56899888 79999988743     3457777777664

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=6.7e-10  Score=92.19  Aligned_cols=54  Identities=41%  Similarity=0.559  Sum_probs=49.0

Q ss_pred             CCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEEE
Q psy16151        225 LRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIR  278 (299)
Q Consensus       225 ~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~~  278 (299)
                      .+|++||.|    +...+|+|++|++|++.|.+.+|.|+.||++.|||||++.||||+
T Consensus       141 v~Gd~VN~AaRle~~a~~g~I~vS~~t~~~l~~~~~~~~~~g~i~vKGkg~~~ty~l~  198 (199)
T d1azsb_         141 IWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVN  198 (199)
T ss_dssp             EESHHHHHHHHHHHTCCTTEEEEEHHHHHHHHHTTCCEEEEEEEEETTTEEEEEEEEC
T ss_pred             ccchHHHHHHHHHhcCCCCeEEECHHHHHHHhcCCeEEEEeCCEEecCCCeEEEEEEe
Confidence            347888888    567889999999999999887899999999999999999999996

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=1.3e-08  Score=76.44  Aligned_cols=85  Identities=13%  Similarity=0.198  Sum_probs=64.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||+|| ++||++|....|.+.++.++++  ++.++-|..|                            ....+++
T Consensus        27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~----------------------------~~~~l~~   75 (114)
T d1xfla_          27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD----------------------------ELKSVAS   75 (114)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETT----------------------------TSHHHHH
T ss_pred             cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEee----------------------------eceeecc
Confidence            4688999999 9999999999999999988875  4555555443                            2346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +|+|.      ..|+.+++ ++|+++....+     .+.+++.+.+..
T Consensus        76 ~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k  111 (114)
T d1xfla_          76 DWAIQ------AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAK  111 (114)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred             cccee------eeEEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHH
Confidence            89986      56888777 79999988743     245677666654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.80  E-value=1.9e-08  Score=74.10  Aligned_cols=86  Identities=10%  Similarity=0.189  Sum_probs=63.8

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +|+++|+|| +.||++|....|.+.++.+++.+ .+.++.|..                            |.+..+++.
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~----------------------------d~~~~l~~~   66 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNT----------------------------DEAPGIATQ   66 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEET----------------------------TTCHHHHHH
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcC-ccceeEEec----------------------------ccchhhhhh
Confidence            578999999 99999999999999999888865 334444433                            334568889


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |+|.      ..|+.+++ ++|+.+.++.+.    .+.+++.+.++.
T Consensus        67 ~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~  102 (104)
T d1fb6a_          67 YNIR------SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEK  102 (104)
T ss_dssp             TTCC------SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHH
T ss_pred             ccee------eeeEEEEE-EcCeEEEEEeCC----CCHHHHHHHHHH
Confidence            9986      56887777 699999887432    256667666654

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.79  E-value=1.4e-08  Score=76.36  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| ++||++|....|.|.++.+++.  ++.++-|..|.                            ...+++
T Consensus        25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~   73 (113)
T d1r26a_          25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVS   73 (113)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred             CCCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc----------------------------chhhHH
Confidence            4568999999 9999999999999999998885  67777766542                            346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .||+.      ..|+.+++ ++|+.+.++.+     .+.+.+.+.|+.
T Consensus        74 ~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~l~~  109 (113)
T d1r26a_          74 KCRVL------QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRD  109 (113)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred             Hcccc------CCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHH
Confidence            89986      56887777 79999988754     234555555544

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.77  E-value=1.2e-08  Score=75.45  Aligned_cols=93  Identities=13%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH  168 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~  168 (299)
                      .+..++.+|++|| +.||++|+...|.+.++..+... .+..|..+.+|..                          ...
T Consensus        11 ~~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~--------------------------~~~   63 (107)
T d1a8la2          11 RNIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI--------------------------EYP   63 (107)
T ss_dssp             TTCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG--------------------------GCH
T ss_pred             HhcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEeccc--------------------------ccc
Confidence            3444455566677 99999999999999998766543 2222333333321                          124


Q ss_pred             HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +++++|+|.      ..|+ +++.++|+++.++.+.    ...+++++.+..
T Consensus        64 ~l~~~~~V~------~vPT-i~i~~~G~~~~~~~G~----~~~~~~~~~i~~  104 (107)
T d1a8la2          64 EWADQYNVM------AVPK-IVIQVNGEDRVEFEGA----YPEKMFLEKLLS  104 (107)
T ss_dssp             HHHHHTTCC------SSCE-EEEEETTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             ccccccccc------cceE-EEEEeCCeEEEEEECC----CCHHHHHHHHHH
Confidence            678899986      5686 4667899999887433    245666666554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.4e-08  Score=74.07  Aligned_cols=86  Identities=14%  Similarity=0.283  Sum_probs=63.0

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +++|+|+|| +.||++|+...|.+.++..++.. .+.++.+.+|                            .+..+++.
T Consensus        20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d----------------------------~~~~l~~~   69 (108)
T d2trxa_          20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID----------------------------QNPGTAPK   69 (108)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT----------------------------TCTTHHHH
T ss_pred             CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeecccc----------------------------chhhHHHH
Confidence            578999999 99999999999999988877653 4444444432                            24567888


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |++.      ..|+.+++ ++|+.+..+.+.    ...+++.+.+++
T Consensus        70 ~~v~------~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~  105 (108)
T d2trxa_          70 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA  105 (108)
T ss_dssp             TTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             hCCC------cEEEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHH
Confidence            9986      56877777 699998887432    356677777654

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.5e-08  Score=75.36  Aligned_cols=85  Identities=11%  Similarity=0.044  Sum_probs=65.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|.+||+|| ++||++|....|.+.++.+++.  ++.++-|..|.                            ...+++
T Consensus        20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~----------------------------~~~l~~   68 (107)
T d1gh2a_          20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTAA   68 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred             CCCEEEEEEE-CCCCCCccccchhhhccccccc--ccccccccccc----------------------------chhhhh
Confidence            4678899998 9999999999999999998876  46666665442                            345778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|++.      ..|+.+++ ++|+.+.++.+     .+.+++.+.++.
T Consensus        69 ~~~v~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k  104 (107)
T d1gh2a_          69 TNNIS------ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQ  104 (107)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHH
T ss_pred             hcCce------eceEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHH
Confidence            88986      56888887 89999988743     245666666654

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-08  Score=75.18  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=63.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+|||+|| ++||++|....|.+.++.+++.  ++.++-|..|                            ....+++
T Consensus        19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d----------------------------~~~~~~~   67 (105)
T d2ifqa1          19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD----------------------------DCQDVAS   67 (105)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TCHHHHH
T ss_pred             CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeecccc----------------------------cCHhHHH
Confidence            4678999999 9999999999999999988775  3445444433                            2345677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|++.      ..|+.+++ ++|+.+.+..+     .+.+++.+.++.+
T Consensus        68 ~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~~~  104 (105)
T d2ifqa1          68 ECEVK------CMPTFQFF-KKGQKVGEFSG-----ANKEKLEATINEL  104 (105)
T ss_dssp             HTTCC------BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred             HcCce------EEEEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHhh
Confidence            88886      56898888 79999988743     2356666666543

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.73  E-value=2.1e-08  Score=75.21  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|+|||+|| +.||++|....|.|.++.+++.  ++.++-|..|                            ....+++
T Consensus        25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~~l~~   73 (113)
T d1ti3a_          25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD----------------------------ELKAVAE   73 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETT----------------------------TCHHHHH
T ss_pred             CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeeee----------------------------ccccccc
Confidence            4678999999 9999999999999999988774  4555555443                            2346778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      +|+|.      ..|+.+++ ++|+.+....+     .+.+++.+.++.
T Consensus        74 ~~~I~------~~Pt~~~~-k~G~~v~~~~G-----~~~~~l~~~i~k  109 (113)
T d1ti3a_          74 EWNVE------AMPTFIFL-KDGKLVDKTVG-----ADKDGLPTLVAK  109 (113)
T ss_dssp             HHHCS------STTEEEEE-ETTEEEEEEEC-----CCTTHHHHHHHH
T ss_pred             cCeec------ccceEEEE-ECCEEEEEEcC-----CCHHHHHHHHHH
Confidence            88986      46888777 59999988743     234566666654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=9.1e-09  Score=78.12  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      ..++|+|.|| +.|||+|+...|.|.++.++|.+..+.+..|..|                            .+.++++
T Consensus        29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d----------------------------~~~~l~~   79 (119)
T d2es7a1          29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE----------------------------QSEAIGD   79 (119)
T ss_dssp             CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHH----------------------------HHHHHHH
T ss_pred             CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC----------------------------CCHHHHH
Confidence            3456777777 9999999999999999999987655555555332                            2356788


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|||.      ..|+.+++ ++|+.+....+.    .+.+++++.++.+
T Consensus        80 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~l  117 (119)
T d2es7a1          80 RFNVR------RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSI  117 (119)
T ss_dssp             TTTCC------SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHH
T ss_pred             hcCcC------cceEEEEE-EcCeEEEEeeCC----CCHHHHHHHHHHH
Confidence            88986      57888888 799999887332    3567777777654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=6e-09  Score=80.64  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|+|.|| +.|||+|....|.|.++.++|.++.+.+.-|..|                            .+.++++
T Consensus        35 ~~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d----------------------------~~~~la~   85 (132)
T d2hfda1          35 PDGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE----------------------------QSEAIGD   85 (132)
T ss_dssp             SEEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH----------------------------HHHHHHH
T ss_pred             CCcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEec----------------------------CCHHHHH
Confidence            3457778888 9999999999999999999987655444444332                            2357888


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP  224 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~  224 (299)
                      .|+|.      ..|+++++ ++|+.+..+.+    ..+.+++.+.++.+-.+
T Consensus        86 ~~~V~------~~PT~~~~-~~G~~v~~~~G----~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          86 RFGVF------RFPATLVF-TGGNYRGVLNG----IHPWAELINLMRGLVEP  126 (132)
T ss_dssp             HHTCC------SCCEEEEE-ETTEEEEEECC----CSCHHHHHHHHHHHHSC
T ss_pred             hhccC------cceeEEEE-EcCcEeeeecC----CCCHHHHHHHHHHHhCc
Confidence            99996      56888888 89999988732    24677888888776554

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.60  E-value=1.6e-07  Score=68.94  Aligned_cols=85  Identities=8%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++++||.|| +.||++|....|.+.++.+++.  ++.++-+..|.                            ..++++
T Consensus        17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~----------------------------~~~~~~   65 (103)
T d1syra_          17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVTE   65 (103)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHHH
T ss_pred             CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeecccc----------------------------Ccceee
Confidence            4678999999 9999999999999999998875  45555555432                            345778


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      .|+|.      ..|+.+++ ++|+.+.+..+     .+.+++.+.++.
T Consensus        66 ~~~V~------~~Pt~i~~-k~G~~v~~~~G-----~~~~~l~~~i~k  101 (103)
T d1syra_          66 KENIT------SMPTFKVY-KNGSSVDTLLG-----ANDSALKQLIEK  101 (103)
T ss_dssp             HTTCC------SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHT
T ss_pred             eeeee------cceEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHh
Confidence            88986      56877666 79999888743     234666666654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.55  E-value=4.1e-08  Score=69.48  Aligned_cols=82  Identities=13%  Similarity=0.233  Sum_probs=54.3

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +|..|++|| ++||++|+...|.+.++.+++.. .+.++.+..                            |.+.+++++
T Consensus         2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~----------------------------d~~~~la~~   51 (85)
T d1fo5a_           2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINV----------------------------MENPQKAME   51 (85)
T ss_dssp             CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEES----------------------------SSSCCTTTS
T ss_pred             CceEEEEEE-CCCCcChHhhhhhcccccccccc-ccccccccc----------------------------ccccccccc
Confidence            477788888 99999999999999988777653 233333322                            223455668


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                      |||.      ..|+ ++++++|+++    +    ..+.+++.+.++.
T Consensus        52 ~~V~------~~Pt-~~i~~~g~~~----G----~~~~~~l~~~i~~   83 (85)
T d1fo5a_          52 YGIM------AVPT-IVINGDVEFI----G----APTKEALVEAIKK   83 (85)
T ss_dssp             TTTC------CSSE-EEETTEEECC----S----SSSSHHHHHHHHH
T ss_pred             CCce------EeeE-EEEECCcEEE----C----CCCHHHHHHHHHh
Confidence            8886      4577 4677887632    1    2245667776654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.55  E-value=2.4e-07  Score=69.39  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++++|+|| +.|||+|+...|.|.++.++++   ..+..|.++.......                      ...+++
T Consensus        25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~~----------------------~~~~~~   78 (115)
T d1zmaa1          25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLND----------------------LQAFRS   78 (115)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHH----------------------HHHHHH
T ss_pred             cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeeccccccc----------------------cccccc
Confidence            4678999998 8999999999999999987764   3455666664322111                      235677


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL  217 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~  217 (299)
                      .|+|.      ..|+.+++ ++|+++.+..+.    ...+++.+.
T Consensus        79 ~~~V~------~~PTli~~-~~gk~~~~~~G~----~~~~el~~f  112 (115)
T d1zmaa1          79 RYGIP------TVPGFVHI-TDGQINVRCDSS----MSAQEIKDF  112 (115)
T ss_dssp             HHTCC------SSCEEEEE-ETTEEEEECCTT----CCHHHHHHH
T ss_pred             ccccc------cccEEEEE-ECCEEEEEEcCC----CCHHHHHHH
Confidence            88886      46888888 589988776322    244555444

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.3e-07  Score=73.37  Aligned_cols=92  Identities=10%  Similarity=0.084  Sum_probs=64.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|.|||.|| +.||++|....|.|.++.+++++ .+.++-|.+|..                            .++++
T Consensus        21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~----------------------------~~la~   70 (137)
T d1qgva_          21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV----------------------------PDFNK   70 (137)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred             CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeecccc----------------------------chhhh
Confidence            4679999999 99999999999999999999974 467777766532                            24566


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC------CCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV------GRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~------g~~~~evl~~l~~L  221 (299)
                      .|+|.      ..|+.+++ ++|+.+....+....      -.+.+++++.++.+
T Consensus        71 ~~~I~------~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          71 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             hcCee------eEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            78886      56888888 688877665432211      12455566655544

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.8e-07  Score=69.43  Aligned_cols=92  Identities=9%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .++.++|.|| +.||++|....|.+.++.+.+.+.++.|..|.++.                            ..+++.
T Consensus        26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~----------------------------~~~l~~   76 (119)
T d2b5ea4          26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCM   76 (119)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHH
T ss_pred             cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccc----------------------------hHHHHH
Confidence            3567888887 99999999999999999999887677777776542                            346777


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      .|+|.      ..|+.+++ ++|+......+  ......+++++.+....
T Consensus        77 ~~~v~------~~Pti~~f-~~g~~~~~~~y--~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          77 EHNIP------GFPSLKIF-KNSDVNNSIDY--EGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             HTTCC------SSSEEEEE-ETTCTTCEEEC--CSCCSHHHHHHHHHHHT
T ss_pred             Hhccc------cCCeEEEE-ECCEEeeeEEe--cCCCCHHHHHHHHHHhh
Confidence            88885      56898888 77765443322  12347788888887654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.1e-07  Score=70.06  Aligned_cols=95  Identities=20%  Similarity=0.295  Sum_probs=63.8

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+|++||.|| +.||++|+...|.+.++.++++..+..|..+.+|.                          |....+++
T Consensus        23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~--------------------------~~~~~l~~   75 (120)
T d1meka_          23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA--------------------------TEESDLAQ   75 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET--------------------------TTCCSSHH
T ss_pred             cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeecccc--------------------------ccchhHHH
Confidence            4689999998 99999999999999999988876543333332221                          12335667


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      .|++.      ..|+++++ ++|+......+  ...+..+++++.++....
T Consensus        76 ~~~i~------~~Pt~~~~-~~G~~~~~~~~--~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          76 QYGVR------GYPTIKFF-RNGDTASPKEY--TAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             HHTCC------SSSEEEEE-ESSCSSSCEEC--CCCSSHHHHHHHHHTTSC
T ss_pred             HhCCc------cCCeEEEE-ECCeEeeeEEe--cCCCCHHHHHHHHHHhhC
Confidence            88886      46888888 46644322111  123568889988887543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.39  E-value=1.3e-06  Score=63.15  Aligned_cols=83  Identities=17%  Similarity=0.133  Sum_probs=58.1

Q ss_pred             ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      ++.|.+.++.|+ +.|||+|+...|.+.++..++.  ++.+..|..+.                            +.++
T Consensus        12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~----------------------------~~~l   60 (96)
T d1hyua4          12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT----------------------------FQNE   60 (96)
T ss_dssp             HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT----------------------------CHHH
T ss_pred             hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEeccc----------------------------chHH
Confidence            456777788888 9999999999999998876543  35555444332                            3567


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ  219 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~  219 (299)
                      +..|||.      ..|++|+   +|+.++..      ....+++++.|+
T Consensus        61 ~~~~~I~------~vPt~~~---ng~~~~~G------~~~~~~l~~~le   94 (96)
T d1hyua4          61 ITERNVM------GVPAVFV---NGKEFGQG------RMTLTEIVAKVD   94 (96)
T ss_dssp             HHHTTCC------SSSEEEE---TTEEEEES------CCCHHHHHHHHC
T ss_pred             Hhhcccc------cccEEEE---CCEEEEec------CCCHHHHHHHHh
Confidence            7788886      4688654   78876432      246778877664

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.3e-08  Score=76.30  Aligned_cols=47  Identities=13%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151         90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS  138 (299)
Q Consensus        90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~  138 (299)
                      +.-.||+++|+|| ++||++|+...+.+.+..+..+ .+..++.|.+|.
T Consensus        21 A~~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~   67 (135)
T d1sena_          21 AAASGLPLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLED   67 (135)
T ss_dssp             HHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEG
T ss_pred             HHHcCCcEEEEEE-ecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCC
Confidence            3346999999998 9999999999999877654333 334566666664

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.31  E-value=1e-06  Score=62.11  Aligned_cols=78  Identities=19%  Similarity=0.390  Sum_probs=52.7

Q ss_pred             EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCc
Q psy16151         98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY  177 (299)
Q Consensus        98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~  177 (299)
                      |..|| +.||++|+...|.+.++.+++.+ ++.++-|.+|                            .+.+++++|||.
T Consensus         5 v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d----------------------------~~~~l~~~~~V~   54 (85)
T d1nhoa_           5 IEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM----------------------------VDREKAIEYGLM   54 (85)
T ss_dssp             EEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT----------------------------TCGGGGGGTCSS
T ss_pred             EEEEE-CCCCcchHHHHHHHhhhcccccc-cccccccccc----------------------------cchhhHHhcCce
Confidence            44566 99999999999999999999864 4666666544                            233566788886


Q ss_pred             ccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151        178 LSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       178 ~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~  220 (299)
                            ..|+. ++|  |+.++..      ..+.+++.+.++.
T Consensus        55 ------~~Pt~-~~~--~~~~~~G------~~~~~~l~~~i~~   82 (85)
T d1nhoa_          55 ------AVPAI-AIN--GVVRFVG------APSREELFEAIND   82 (85)
T ss_dssp             ------CSSEE-EET--TTEEEEC------SSCCHHHHHHHHH
T ss_pred             ------EeCEE-EEC--CcEEEEc------CCCHHHHHHHHHH
Confidence                  46765 554  4544332      2345677766654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.3e-06  Score=64.69  Aligned_cols=94  Identities=15%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             cCccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         89 LSDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      .+.-.+|+++|+|+ +.||+.|...-...   .++.+.+ +.++.++.|+.++++                         
T Consensus        37 ~Ak~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~e-------------------------   89 (147)
T d2dlxa1          37 CGQMQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEE-------------------------   89 (147)
T ss_dssp             HHHHHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHH-------------------------
T ss_pred             HHHHcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccchh-------------------------
Confidence            33346899999999 99999997543321   1122222 224555555554432                         


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeC-CCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDR-NGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~-dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                       ...+++.|++.      ..|++++||| +|+++..+ +    +...++++..++..
T Consensus        90 -~~~~~~~y~v~------~~Pti~~idp~~ge~v~~~-~----~~~~~~fl~~L~~f  134 (147)
T d2dlxa1          90 -GQRYIQFYKLG------DFPYVSILDPRTGQKLVEW-H----QLDVSSFLDQVTGF  134 (147)
T ss_dssp             -HHHHHHHHTCC------SSSEEEEECTTTCCCCEEE-S----SCCHHHHHHHHHHH
T ss_pred             -hhhhhhheecC------ceeEEEEEeCCCCeEeccc-C----CCCHHHHHHHHHHH
Confidence             24567778885      4689999998 58887665 2    23567777766553

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=9.2e-07  Score=68.32  Aligned_cols=91  Identities=11%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL  172 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  172 (299)
                      .+++|+|.|| +.||++|....|.+.++.+.+++.+..+..+.+|..                            ..+++
T Consensus        29 ~~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~----------------------------~~~~~   79 (140)
T d2b5ea1          29 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT----------------------------ENDVR   79 (140)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG----------------------------GCCCS
T ss_pred             CCCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeecc----------------------------chhcc
Confidence            3578899888 999999999999999999999876655555555421                            11223


Q ss_pred             HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .|+|.      ..|+.+++ ++|+......+  ...+..+.+++.+...
T Consensus        80 ~~~v~------~~Ptl~~f-~~g~~~~~~~y--~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          80 GVVIE------GYPTIVLY-PGGKKSESVVY--QGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             SCCCS------SSSEEEEE-CCTTSCCCCBC--CSCCCHHHHHHHHHHH
T ss_pred             ccccc------cCCeEEEE-ECCEEcceeEe--CCCCCHHHHHHHHHHc
Confidence            46664      46898888 46765433211  1235778888888753

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.90  E-value=8.8e-05  Score=55.42  Aligned_cols=97  Identities=15%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI  170 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  170 (299)
                      +.+++||.|| ++||++|..  |.+.++++++.+..  +.+.-|.+++..                       .+.+.++
T Consensus        18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~-----------------------~~~n~~l   71 (122)
T d2c0ga2          18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG-----------------------ELENKAL   71 (122)
T ss_dssp             TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-----------------------TCTTHHH
T ss_pred             cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-----------------------cccCHHH
Confidence            3478999998 999999994  89999988886533  334444433211                       0224678


Q ss_pred             HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      ++.|++..    ...|+.+++...+......  .....+..+.+++.++.-
T Consensus        72 ~~~~~i~~----~~~PTi~~f~~g~~~~~~~--~~~g~rt~~~l~~fv~~~  116 (122)
T d2c0ga2          72 GDRYKVDD----KNFPSIFLFKGNADEYVQL--PSHVDVTLDNLKAFVSAN  116 (122)
T ss_dssp             HHHTTCCT----TSCCEEEEESSSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred             HHHhhccc----CCCCcEEEEeCCccccccc--ccCCCCCHHHHHHHHHHh
Confidence            88998842    2478999996554443332  233456788888888754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.39  E-value=7.2e-05  Score=55.01  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN  128 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g  128 (299)
                      .+|++||.|| +.||++|....|.+.++.+.+....
T Consensus        19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~   53 (116)
T d2djja1          19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSE   53 (116)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCEEEEEE-ecccccccccchHHHHHHHHHhccc
Confidence            3578999998 9999999999999999999987643

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.39  E-value=0.0012  Score=49.02  Aligned_cols=87  Identities=6%  Similarity=-0.016  Sum_probs=53.3

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-------hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD  165 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-------~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D  165 (299)
                      +.+.++|.|| +.||..| ...|....+...+.       ..++.+..|..                            +
T Consensus        27 ~~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~----------------------------~   76 (124)
T d1a8ya1          27 KYEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDS----------------------------E   76 (124)
T ss_dssp             HCSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEET----------------------------T
T ss_pred             hCCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEe----------------------------e
Confidence            3567888887 9999854 45555554444433       22333333322                            3


Q ss_pred             CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+.++++.|+|.      ..|+.+++. +|+.+. +    ...++.+.+++.+..+
T Consensus        77 ~~~~l~~~~~I~------~yPTi~~f~-~g~~~~-y----~G~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          77 KDAAVAKKLGLT------EEDSIYVFK-EDEVIE-Y----DGEFSADTLVEFLLDV  120 (124)
T ss_dssp             TSHHHHHTTTCC------STTCEEEEE-SSSEEE-C----CSCCSHHHHHHHHHHH
T ss_pred             cccchhhccccc------cCCcEEEec-cCccEE-e----eCCCCHHHHHHHHHHh
Confidence            346788889986      568988885 677652 2    2346778888877543

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=0.00058  Score=56.16  Aligned_cols=89  Identities=10%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      +.+|||.|| +.||+.|....+.|.++..+|.  ++.++-|..+..    ..                         ...
T Consensus       120 ~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~----~~-------------------------~~~  167 (217)
T d2trcp_         120 VTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNT----GA-------------------------GDR  167 (217)
T ss_dssp             TCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHH----TC-------------------------STT
T ss_pred             CCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccccc----hh-------------------------HHh
Confidence            457888888 9999999999999999998886  477777644311    00                         012


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCC---CCCCHHHHHHHHhhc
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP---VGRSVDETLRLVQAF  221 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~---~g~~~~evl~~l~~L  221 (299)
                      |++.      ..|+.+++ ++|.++....+...   .......+-..|...
T Consensus       168 ~~i~------~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         168 FSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCC------CCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            4443      46898888 89999998864322   122445555555443

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.0011  Score=47.46  Aligned_cols=82  Identities=7%  Similarity=0.065  Sum_probs=50.3

Q ss_pred             CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151         94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD  173 (299)
Q Consensus        94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  173 (299)
                      .-++|+.|+ +.||++|....+.|.++..+|.     +..+.+|.                          |.+.++.+.
T Consensus        15 ~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~-----~~~v~vd~--------------------------~~~~~l~~~   62 (100)
T d1wjka_          15 ALPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI-----LQEVDITL--------------------------PENSTWYER   62 (100)
T ss_dssp             CCCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE-----EEEEETTS--------------------------STTHHHHHH
T ss_pred             CCCEEEEEE-CCCCCChHHHHHHHHHhhhhcc-----eEEEeccc--------------------------ccCHHHHHH
Confidence            346777777 9999999988877776643332     22222222                          223567777


Q ss_pred             hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151        174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD  223 (299)
Q Consensus       174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~  223 (299)
                      |++.       .|.. +|  ||+.+..+      ..+.+++.+.|+.+..
T Consensus        63 y~~~-------VPvl-~i--dg~~~~~g------~~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          63 YKFD-------IPVF-HL--NGQFLMMH------RVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SSSS-------CSEE-EE--SSSEEEES------SCCHHHHHHHHHSSSC
T ss_pred             hccc-------CCce-ee--cCceEEeC------CCCHHHHHHHHHHHhc
Confidence            8863       4644 45  67766332      2366788888887654

>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]

Probab=95.90  E-value=0.00061  Score=54.60  Aligned_cols=51  Identities=16%  Similarity=0.036  Sum_probs=40.3

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccce-eEEEEEE
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGL-ITTYFIR  278 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~-~~t~~~~  278 (299)
                      .|++||.|    +...+|+|.+|+++++.|.+  +.+..+|.+.+||++. +.+|.++
T Consensus       138 ~G~~Vn~AaRle~~a~~~~Ilise~~~~~l~~--~~~~~~~~~~lKG~~~pv~~y~i~  193 (197)
T d1wc1a_         138 IGPSVNIAARLQEATAPNSIMVSAMVAQYVPD--EEIIKREFLELKGIDEPVMTCVIN  193 (197)
T ss_dssp             ESHHHHHHHHHHHHSCTTCEEEEHHHHTTSCG--GGEEEEEEECCTTCSSCEEEEEEC
T ss_pred             cccHHHHHHHHHhcCCCCEEEEeHHHHHhcCC--CeeEEecCEEeCCCCcEEEEEEEC
Confidence            36666666    44567899999999999865  5677899999999997 7888764

>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]

Probab=95.87  E-value=0.0013  Score=54.42  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             CCCccccc----cceeccceechHHHHHHHhh---cCceEEecceeeecccce-eEEEEEEccccccc
Q psy16151        226 RTGAINGL----SLLVIGLFQVTEKTCDILED---HGVTCELRGRTFIKGKGL-ITTYFIRQQEIEKF  285 (299)
Q Consensus       226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~---~~~~~~~rg~~~~k~~~~-~~t~~~~~~~~~~~  285 (299)
                      .|++||.|    +...+|+|.+|+++++.+..   ..|.|...|++.+||++. +.+|.|..-.+..|
T Consensus       157 ~G~~Vn~AaRles~a~~g~IliS~~~~~~l~~~~~~~~~~~~lg~~~lKG~~~p~~vy~v~~~~~r~~  224 (235)
T d1fx2a_         157 YGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNTVPSRNF  224 (235)
T ss_dssp             ESHHHHHHHHHHHTCCTTCEEEEHHHHHTSCHHHHHTCCEEEEEEECCTTCSSCEEEEEECCSTTCCC
T ss_pred             ecHHHHHHHHHHhccCCCeEEECHHHHHHHhhhhcCceEEEEeceEEecCCCCCEEEEEEeccCCCCc
Confidence            48999999    57789999999999999854   358999999999999884 89999875444433

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.092  Score=38.04  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEE-EeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVA-ASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS  171 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~-Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  171 (299)
                      +++.++|.|+ +.||..|..  |...++.+++++..-.+++ |.+...                       =.+.+..++
T Consensus        20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~v-----------------------d~~~n~~l~   73 (122)
T d1g7ea_          20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY-----------------------GDKLNMELS   73 (122)
T ss_dssp             GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCT-----------------------TSCHHHHHH
T ss_pred             hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeec-----------------------cccccHHHH
Confidence            4678889887 999977753  7788888888764322221 222110                       012245677


Q ss_pred             HHhCCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHHhh
Q psy16151        172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLVQA  220 (299)
Q Consensus       172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l~~  220 (299)
                      ..|++...    ..|+.+++ ++|.... ..+   ...+..+.+++.++.
T Consensus        74 ~~~~~~I~----~yPTi~~f-~~G~~~~~~~y---~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          74 EKYKLDKE----SYPVFYLF-RDGDFENPVPY---SGAVKVGAIQRWLKG  115 (122)
T ss_dssp             HHHTCSSS----SCEEEEEE-ESSCCCCCEEE---ESCCCHHHHHHHHHT
T ss_pred             Hhhccccc----CCCeEEEE-ecCcccCceec---CCCCCHHHHHHHHHh
Confidence            77765321    46898888 4664321 111   124678888888875

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.047  Score=42.16  Aligned_cols=98  Identities=15%  Similarity=0.141  Sum_probs=53.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--CCHHh----HH--------HHhhcccccCCCCcc
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DSHFT----HL--------AWVNTPRKEGGLGKL  158 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d~~~~----~~--------~~~~~~~~~~~~~~~  158 (299)
                      ..+.+|+.|+ -.-||+|....+.+.++.++.   .+.++.+..  -.+++    ..        ++.+.+...+...+.
T Consensus        35 ~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~  110 (169)
T d1v58a1          35 DAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  110 (169)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence            3345666666 777999999999988776432   366665532  11111    11        111111111110011


Q ss_pred             ceeeee--------cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151        159 KIPLLS--------DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI  200 (299)
Q Consensus       159 ~~p~l~--------D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~  200 (299)
                      ..+...        +.+.++++.+|+.      ..|+.|+.|++|+++.+
T Consensus       111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~------gTPt~i~~~~~g~~~~~  154 (169)
T d1v58a1         111 NVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQQA  154 (169)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEEEE
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCC------CCCEEEEECCCCCEEEe
Confidence            111111        1135678888986      45898998999987654

>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=94.34  E-value=0.00074  Score=54.12  Aligned_cols=53  Identities=17%  Similarity=0.108  Sum_probs=43.0

Q ss_pred             CCCCCccccc----cceeccceechHHHHHHHhhcCceE--Eecceeeeccc-ceeEEEEE
Q psy16151        224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTC--ELRGRTFIKGK-GLITTYFI  277 (299)
Q Consensus       224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~--~~rg~~~~k~~-~~~~t~~~  277 (299)
                      ..+|++||.|    +...+|++.+|+++++.|.. .++|  ..+|++.+||| ..+.||.+
T Consensus       130 ~~~G~~Vn~Aarl~~~a~~~~ilvS~~~~~~l~~-~~~~~~~~~g~~~~~gk~~~i~~y~v  189 (190)
T d1azsa_         130 DVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG-DYEVEPGCGGERNAYLKEHSIETFLI  189 (190)
T ss_dssp             EEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTT-CSCEEECCGGGTCHHHHHTTCCCEEE
T ss_pred             ceeccceehHHHHhccCCCCEEEECHHHHHHhcc-CceEEEccCcEEEEecccCceEEEEE
Confidence            3458888888    67889999999999999965 3445  45999999996 77899986

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.074  Score=40.37  Aligned_cols=37  Identities=14%  Similarity=-0.053  Sum_probs=27.2

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      .+|.+|+.|. -.-||+|+...+.+.++.+    .++.++.+
T Consensus        25 ~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~   61 (156)
T d1eeja1          25 QEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYL   61 (156)
T ss_dssp             TCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEE
T ss_pred             CCCEEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEE
Confidence            5677888876 7779999998888887643    45665554

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.92  E-value=0.038  Score=41.84  Aligned_cols=37  Identities=14%  Similarity=0.031  Sum_probs=27.0

Q ss_pred             CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151         93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA  134 (299)
Q Consensus        93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V  134 (299)
                      .+|.+|+.|. -.-||+|+...+.+.++.+    .+..|+.+
T Consensus        25 ~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~----~~~~v~~~   61 (150)
T d1t3ba1          25 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYL   61 (150)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHHHHHHhHHHHHHhc----cCceEEEE
Confidence            5677777776 7779999999888877753    35555555

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.06  E-value=1.2  Score=35.56  Aligned_cols=40  Identities=15%  Similarity=0.099  Sum_probs=31.5

Q ss_pred             CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151         95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD  137 (299)
Q Consensus        95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d  137 (299)
                      +..||-.|-+.||+.|+.--..|.++.+   ..+|..|++-+|
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~---~~~Vi~La~HVd   44 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQ---KGDVVGLSYHVD   44 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHH---HTSSEEEEEECS
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhC---CCCEEEEEeccc
Confidence            4568888889999999998888888854   346777777776

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.33  E-value=6.8  Score=30.36  Aligned_cols=145  Identities=11%  Similarity=0.042  Sum_probs=85.8

Q ss_pred             cccccCCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh----------c
Q psy16151         61 FICFKLVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ----------I  127 (299)
Q Consensus        61 ~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~----------~  127 (299)
                      ..+.+.+|..+|++.+..  -.|++++.|.+.   -|+|-|++|- +.  ..+..+...|.++.+.+.+          .
T Consensus        13 lA~~~~iG~R~~sa~V~R--~aDa~p~~L~~~~~adGrfrI~vFa-Gd--~~~~~~~~~l~~la~~L~s~~s~~~r~t~~   87 (201)
T d1pn0a2          13 LAKNCVVGTRFKSQPVVR--HSEGLWMHFGDRLVTDGRFRIIVFA-GK--ATDATQMSRIKKFAAYLDSENSVISRYTPK   87 (201)
T ss_dssp             GBTTSCTTSBCCCCEEEE--TTTTEEEEGGGGCCCSSCEEEEEEE-EC--TTSHHHHHHHHHHHHHHHSTTSHHHHHSBT
T ss_pred             HhcCCCCceecCCceEEE--ecCCCEeehhccccCCCcEEEEEEe-cC--CCccchhhHHHHHHHHHhcccchhhhccCC
Confidence            346799999999999764  358899999975   6899999886 43  2234445555555555431          1


Q ss_pred             ------CcEEEEEeCCCHHhHHHHhhcccccCCCCcccee-ee------ecCchHHHHHhCCcccCCCCceeEEEEEeCC
Q psy16151        128 ------NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LL------SDLTHKISLDYGVYLSDQGHTLRGLFIIDRN  194 (299)
Q Consensus       128 ------gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p-~l------~D~~~~~~~~~gv~~~~~g~~~p~~~lID~d  194 (299)
                            -++++.|...+..+. +|..-- ..+......|- +.      .++++.+.+.||+...     .-..+|+-||
T Consensus        88 ~~d~~~~i~~~~V~~~~~~~i-e~~dlP-~~~~~~~~~~~~~~~d~~~~~~~~~~ay~~~GId~~-----~G~vVVVRPD  160 (201)
T d1pn0a2          88 GADRNSRIDVITIHSCHRDDI-EMHDFP-APALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDET-----KGAVVVVRPD  160 (201)
T ss_dssp             TSCTTSSEEEEEEESSCTTSC-CGGGSC-TTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTT-----TCEEEEECTT
T ss_pred             CCCCCCcEEEEEEecCCCCcc-cccccc-ccccCCcceEEeeecccccccCCcccHHHHhCCCCC-----ceEEEEECCC
Confidence                  267888865442211 111110 00000012221 11      2345789999998532     1368899999


Q ss_pred             CcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151        195 GVLRQITMNDLPVGRSVDETLRLVQAFH  222 (299)
Q Consensus       195 G~I~~~~~~~~~~g~~~~evl~~l~~L~  222 (299)
                      |-|-.+..  .   .+.+.+-+-+.+.-
T Consensus       161 gyVg~v~~--L---dd~~~L~~yF~~fl  183 (201)
T d1pn0a2         161 GYTSLVTD--L---EGTAEIDRYFSGIL  183 (201)
T ss_dssp             SBEEEEEC--T---TTHHHHHHHHHTTB
T ss_pred             cceEEEEc--c---ccHHHHHHHHHHhh
Confidence            99988852  2   24566666666554

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=84.54  E-value=0.46  Score=30.74  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=24.7

Q ss_pred             EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151        102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  146 (299)
Q Consensus       102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~  146 (299)
                      |...+||.|...-..|       ++.|+...-+.++...+..++.
T Consensus         6 Yt~~~C~~C~~ak~~L-------~~~~i~~~~~~i~~~~~~~~~~   43 (74)
T d1r7ha_           6 YTKPACVQCTATKKAL-------DRAGLAYNTVDISLDDEARDYV   43 (74)
T ss_dssp             EECTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHHHHHHH
T ss_pred             EeCCCChhHHHHHHHH-------HHcCCceEEEEccCCHHHHHHH
Confidence            3488999998765444       3457887777777644444443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=0.55  Score=30.61  Aligned_cols=39  Identities=13%  Similarity=0.075  Sum_probs=24.4

Q ss_pred             EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151        101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV  146 (299)
Q Consensus       101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~  146 (299)
                      .|..+|||.|...-..|       .++|+...-+.++...+..++.
T Consensus         5 iYs~~~C~~C~~ak~~L-------~~~~i~y~~~~i~~~~~~~~~~   43 (76)
T d1h75a_           5 IYTRNDCVQCHATKRAM-------ENRGFDFEMINVDRVPEAAEAL   43 (76)
T ss_dssp             EEECTTCHHHHHHHHHH-------HHTTCCCEEEETTTCHHHHHHH
T ss_pred             EEeCCCCccHHHHHHHH-------HhcCceeEEEeecCCHHHHHHH
Confidence            34489999998765544       3457777777776543333333

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.00  E-value=5  Score=28.41  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             hHHHHHhCCcccCCCCceeEEEEEeCCCc---EEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151        168 HKISLDYGVYLSDQGHTLRGLFIIDRNGV---LRQITMNDLPVGRSVDETLRLVQAF  221 (299)
Q Consensus       168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~---I~~~~~~~~~~g~~~~evl~~l~~L  221 (299)
                      .+.++.|++.      ..|++.|.+ +|+   |++.   +.+.|.....++..|-.+
T Consensus        68 ~~~~~~~~ve------r~Ps~~i~~-~g~~~gIrF~---GiP~GhEf~SlilaIl~v  114 (119)
T d1a8la1          68 KELAKRYRID------RAPATTITQ-DGKDFGVRYF---GLPAGHEFAAFLEDIVDV  114 (119)
T ss_dssp             HHHHHHTTCC------SSSEEEEEE-TTBCCSEEEE---SCCCTTHHHHHHHHHHHH
T ss_pred             hhHHHhhccc------cCceEEEec-CCcccceEEE---eccCchhHHHHHHHHHHh
Confidence            5778889985      357776665 453   5554   467777777777666543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.63  E-value=1.6  Score=32.34  Aligned_cols=48  Identities=8%  Similarity=0.003  Sum_probs=34.5

Q ss_pred             eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC-cEEEEE
Q psy16151         86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAA  134 (299)
Q Consensus        86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g-v~vi~V  134 (299)
                      .+.+-+-..++.|+.|+ ...||+|..--+.+.++.+++.+.+ +.++.+
T Consensus        16 ~~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~   64 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK   64 (172)
T ss_dssp             SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence            34455555566677776 7779999999999999999888654 444433