Psyllid ID: psy16215
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y253 | 713 | DNA polymerase eta OS=Hom | yes | N/A | 0.403 | 0.589 | 0.477 | 1e-111 | |
| Q9JJN0 | 694 | DNA polymerase eta OS=Mus | yes | N/A | 0.398 | 0.597 | 0.479 | 1e-106 | |
| O42917 | 872 | N-acetyltransferase eso1 | yes | N/A | 0.330 | 0.394 | 0.266 | 2e-33 | |
| Q9UNA4 | 740 | DNA polymerase iota OS=Ho | no | N/A | 0.256 | 0.360 | 0.318 | 7e-33 | |
| Q6R3M4 | 717 | DNA polymerase iota OS=Mu | no | N/A | 0.344 | 0.500 | 0.278 | 2e-32 | |
| Q4L7K8 | 358 | DNA polymerase IV OS=Stap | yes | N/A | 0.265 | 0.770 | 0.279 | 7e-24 | |
| Q6MA55 | 350 | DNA polymerase IV OS=Prot | yes | N/A | 0.226 | 0.674 | 0.284 | 5e-22 | |
| B9DMT3 | 356 | DNA polymerase IV OS=Stap | yes | N/A | 0.264 | 0.772 | 0.272 | 3e-21 | |
| Q8EQ56 | 419 | DNA polymerase IV OS=Ocea | yes | N/A | 0.127 | 0.317 | 0.391 | 2e-20 | |
| B0KTK6 | 354 | DNA polymerase IV OS=Pseu | yes | N/A | 0.221 | 0.652 | 0.275 | 2e-20 |
| >sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1 | Back alignment and function desciption |
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Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/438 (47%), Positives = 281/438 (64%), Gaps = 18/438 (4%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAV 125
Query: 124 HERMKSIGH--IAASQLSNTFVVGF--GPDNNDEDA-----RKAGVMEWLGQVYSDTDTS 174
ER++ + I+A L +T++ G GP +E RK G+ +WL + D TS
Sbjct: 126 QERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTS 185
Query: 175 LMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILP 234
D Q L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q+++
Sbjct: 186 -----PDLQ-LTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 239
Query: 235 QSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLY 294
SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SWLY
Sbjct: 240 HGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLY 299
Query: 295 YIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLN 354
+ RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D N
Sbjct: 300 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDN 359
Query: 355 KRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPL 414
R A L VS + D +++S R AL Y + + VI N++ ++ +PPL
Sbjct: 360 DRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPL 419
Query: 415 LFLGLSASKFSPLGSHPS 432
L L A+KFS S PS
Sbjct: 420 TMLFLCATKFS--ASAPS 435
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DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Plays an important role in the repair of UV-induced pyrimidine dimers. Depending on the context, it inserts the correct base, but causes frequent base transitions and transversions. May play a role in hypermutation at immunoglobulin genes. Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but does not have lyase activity. Targets POLI to replication foci. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1 | Back alignment and function description |
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| >sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eso1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4L7K8|DPO4_STAHJ DNA polymerase IV OS=Staphylococcus haemolyticus (strain JCSC1435) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6MA55|DPO4_PARUW DNA polymerase IV OS=Protochlamydia amoebophila (strain UWE25) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|B9DMT3|DPO4_STACT DNA polymerase IV OS=Staphylococcus carnosus (strain TM300) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8EQ56|DPO4_OCEIH DNA polymerase IV OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|B0KTK6|DPO4_PSEPG DNA polymerase IV OS=Pseudomonas putida (strain GB-1) GN=dinB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| 350412770 | 818 | PREDICTED: DNA polymerase eta-like [Bomb | 0.416 | 0.530 | 0.542 | 1e-138 | |
| 340710696 | 820 | PREDICTED: DNA polymerase eta-like [Bomb | 0.416 | 0.529 | 0.533 | 1e-136 | |
| 380014904 | 700 | PREDICTED: DNA polymerase eta-like [Apis | 0.404 | 0.601 | 0.538 | 1e-135 | |
| 197245419 | 753 | DNA-directed DNA polymerase eta [Nasonia | 0.405 | 0.560 | 0.540 | 1e-132 | |
| 307200513 | 827 | DNA polymerase eta [Harpegnathos saltato | 0.403 | 0.507 | 0.525 | 1e-132 | |
| 328786259 | 689 | PREDICTED: DNA polymerase eta [Apis mell | 0.404 | 0.611 | 0.531 | 1e-132 | |
| 383850772 | 774 | PREDICTED: DNA polymerase eta-like [Mega | 0.403 | 0.542 | 0.524 | 1e-131 | |
| 322796130 | 818 | hypothetical protein SINV_03879 [Solenop | 0.404 | 0.514 | 0.517 | 1e-130 | |
| 347965825 | 929 | AGAP001404-PA [Anopheles gambiae str. PE | 0.415 | 0.466 | 0.508 | 1e-124 | |
| 157106621 | 852 | DNA polymerase eta [Aedes aegypti] gi|10 | 0.393 | 0.481 | 0.504 | 1e-123 |
| >gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens] | Back alignment and taxonomy information |
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Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/463 (54%), Positives = 317/463 (68%), Gaps = 29/463 (6%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++ LIDMDCF+CQVE KL P GKPLAVVQYN WK GGIIAVNYEAR GVTRHMRG+
Sbjct: 8 RVVVLIDMDCFFCQVETKLQPEYAGKPLAVVQYNQWKLGGIIAVNYEAREYGVTRHMRGE 67
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
EAK+ CP+I L VP +RGKAD S+YR+AGREVI V+ + NI+ERAS+DEAY+D+TD+V
Sbjct: 68 EAKEKCPDIVLASVPCLRGKADTSRYRSAGREVINVIKKHCNIIERASVDEAYLDITDLV 127
Query: 124 HERMK----SIGHIAASQLSNTFVVGFGP-DNNDEDARKAGVMEWLGQVYSDTDTSLMEN 178
+RM S+ H+ +QLSNTFVVG+ NDE+ R G W+ V+ EN
Sbjct: 128 CKRMSTYSISLNHLV-TQLSNTFVVGYSEVGKNDEEERSKGTETWIMNVF--------EN 178
Query: 179 TEDF--QELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
ED Q+LAIAG+IVEEIRA + KT F CSAGIA NK+LAKL CGLHKP +Q+ILP +
Sbjct: 179 LEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTILPAA 238
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
+VS LY+ L IKKVR+LGGK GD VVE+L C+ M +L ++SL+ LQ F+EKT SWLY I
Sbjct: 239 AVSTLYSTLPIKKVRNLGGKFGDVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWLYNI 298
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
ARGID+EPVN RLVSKSIG CK+FPGK + + + HW EL+ EVCERLE DL N+R
Sbjct: 299 ARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENER 358
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLF 416
RA L+T+ + + S SRS L SYK ++ +Q+I+K+ P+ +
Sbjct: 359 RATLMTICYQYYQNKATVSQSRSCTLNSYKPGNMAIRCVQIISKSTQC--------PIAY 410
Query: 417 LGLSASKFSPLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTN 459
LG+SA KF P + + FFK + EP H + Q+ N
Sbjct: 411 LGISAGKFIPAKGSGNFRNFFK-SNESEP----HKKIDAQTEN 448
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Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST] gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti] gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| ZFIN|ZDB-GENE-060421-4949 | 749 | polh "polymerase (DNA directed | 0.577 | 0.802 | 0.395 | 2.8e-113 | |
| FB|FBgn0037141 | 885 | DNApol-eta "DNApol-eta" [Droso | 0.557 | 0.655 | 0.384 | 4e-110 | |
| RGD|1309893 | 689 | Polh "polymerase (DNA directed | 0.397 | 0.600 | 0.487 | 3.5e-109 | |
| UNIPROTKB|E2RC81 | 712 | POLH "Uncharacterized protein" | 0.429 | 0.627 | 0.468 | 1.2e-108 | |
| UNIPROTKB|F1RRJ6 | 698 | POLH "Uncharacterized protein" | 0.445 | 0.664 | 0.440 | 2.2e-105 | |
| MGI|MGI:1891457 | 694 | Polh "polymerase (DNA directed | 0.399 | 0.599 | 0.480 | 2.8e-105 | |
| UNIPROTKB|Q9Y253 | 713 | POLH "DNA polymerase eta" [Hom | 0.428 | 0.625 | 0.463 | 5.8e-105 | |
| UNIPROTKB|F1MZ79 | 710 | POLH "Uncharacterized protein" | 0.445 | 0.653 | 0.435 | 2.8e-103 | |
| UNIPROTKB|F1NAG6 | 686 | POLH "Uncharacterized protein" | 0.390 | 0.593 | 0.467 | 3e-98 | |
| UNIPROTKB|F1NCM3 | 657 | POLH "Uncharacterized protein" | 0.390 | 0.619 | 0.467 | 3e-98 |
| ZFIN|ZDB-GENE-060421-4949 polh "polymerase (DNA directed), eta" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 1034 (369.0 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 249/630 (39%), Positives = 352/630 (55%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
R++AL+DMDCFY QVE +L P L KP V QY TWKGGGIIAV+YEAR GV R+M D
Sbjct: 7 RVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGRNMFAD 66
Query: 64 EAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVV 123
+A++ CP++++ RVP GKAD++ YR A EVI V+S F+ ++ERASIDEAY+DLT V
Sbjct: 67 DARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFA-VIERASIDEAYMDLTASV 125
Query: 124 HERMK--SIGHIAASQLSNTFVVGFGP--DNN--DEDA-RKAGVMEWLGQVYSDTDTSLM 176
ER+K S+ I A QL NT + GF +N D DA R AG+ +WL + S T++S
Sbjct: 126 QERLKNTSVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSSSTESS-- 183
Query: 177 ENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQS 236
D + LA+ +IVE++RAAV T F CSAGI+HNKVLAKL CGL+KP +Q++LP S
Sbjct: 184 --PADLR-LAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLS 240
Query: 237 SVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYI 296
SV L++ L I K+R+LGGKLG + ETL M +L +FS QL+ HF +KT WLY +
Sbjct: 241 SVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDL 300
Query: 297 ARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKR 356
RGI+ EPV R + KSIGC K F GKTCL T+Q V +W+ +LA E+ ERL D +N R
Sbjct: 301 CRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGR 360
Query: 357 RAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDL-TPPLL 415
A+ LTV Q + S SR AL Y + S+ +I N+A + +P L
Sbjct: 361 VARQLTVGVRQAGGQRSGSFSRCCALVRYDAMKMTNDSLTIIKSLNTAGAHQEAWSPALT 420
Query: 416 FLGLSASKFS--PLGSHPSIQQFFKPQDHPEPMTSEHSSLPEQSTNHDSKKRDKTLLNFN 473
L LSASKFS P S I F P S+ SS ++KR +
Sbjct: 421 LLHLSASKFSDAPSSSSAGITGFLSSDAASSP--SQSSSSQRSPMERPAQKRKRQQDQRQ 478
Query: 474 QQTPFQLALNRIERKLIDKFKSHIESKL---DSCNANVDKLVIGDISEQIKNIAAENVRK 530
++ ++ +RK ++K I++ L D + + GD + Q + +++
Sbjct: 479 RENTTSISAF-FQRKSLEK--QEIQNSLCPGDQSTSASGEHACGDTAAQKTTAISTFLQR 535
Query: 531 YLRTHSKDSNASDEDEESFNDKLVSIEREVEESVGKDIEESLKNVSDVLFNEKVENLTME 590
+ N S +DE+ + + E I SL+ S L +++N
Sbjct: 536 ESLEKQEIQNVSLDDEDQ---SVCAPEENTCREKPAGISTSLQMKS--LEKHQIQNSLCV 590
Query: 591 NKKSIKNECLSPVSSKSKDLTNENLGHTFE 620
+S++ +P ++ D + + F+
Sbjct: 591 GDQSVRAPGENPPREQTSDESPAGISSFFQ 620
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| FB|FBgn0037141 DNApol-eta "DNApol-eta" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| RGD|1309893 Polh "polymerase (DNA directed), eta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RC81 POLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RRJ6 POLH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1891457 Polh "polymerase (DNA directed), eta (RAD 30 related)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y253 POLH "DNA polymerase eta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MZ79 POLH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NAG6 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NCM3 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.691 |
| 4th Layer | 2.7.7.7 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1041 | |||
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 2e-68 | |
| COG0389 | 354 | COG0389, DinP, Nucleotidyltransferase/DNA polymera | 4e-47 | |
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 2e-44 | |
| cd00424 | 343 | cd00424, PolY, Y-family of DNA polymerases | 2e-43 | |
| cd03586 | 334 | cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp | 3e-42 | |
| pfam00817 | 148 | pfam00817, IMS, impB/mucB/samB family | 5e-40 | |
| cd01701 | 404 | cd01701, PolY_Rev1, DNA polymerase Rev1 | 1e-30 | |
| PRK03348 | 454 | PRK03348, PRK03348, DNA polymerase IV; Provisional | 5e-28 | |
| PRK03103 | 409 | PRK03103, PRK03103, DNA polymerase IV; Reviewed | 5e-26 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 2e-25 | |
| PRK01216 | 351 | PRK01216, PRK01216, DNA polymerase IV; Validated | 2e-23 | |
| PRK02794 | 419 | PRK02794, PRK02794, DNA polymerase IV; Provisional | 5e-21 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 1e-19 | |
| PRK03858 | 396 | PRK03858, PRK03858, DNA polymerase IV; Validated | 7e-19 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 1e-18 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 2e-18 | |
| cd01700 | 344 | cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly | 1e-14 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 3e-14 | |
| pfam11799 | 136 | pfam11799, IMS_C, impB/mucB/samB family C-terminal | 7e-14 | |
| PRK03352 | 346 | PRK03352, PRK03352, DNA polymerase IV; Validated | 8e-14 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 3e-11 | |
| cd01700 | 344 | cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly | 5e-09 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 4e-08 | |
| PRK03609 | 422 | PRK03609, umuC, DNA polymerase V subunit UmuC; Rev | 4e-07 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 1e-06 | |
| cd03468 | 335 | cd03468, PolY_like, DNA Polymerase Y-family | 8e-04 |
| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 2e-68
Identities = 107/241 (44%), Positives = 139/241 (57%), Gaps = 5/241 (2%)
Query: 185 LAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLYAN 244
L + IVEEIR V + + CSAGIAHNK+LAKL G++KP Q+IL +V+ ++
Sbjct: 122 LDLGSRIVEEIRQQVYDELGYTCSAGIAHNKMLAKLASGMNKPNAQTILRNDAVASFLSS 181
Query: 245 LSIKKVRHLGGKLGDEVVETLQCSTMLELEKF--SLKQLQSHFEEKTASWLYYIARGIDH 302
L I +R LGGKLG+E+++ L T ++ F S LQ HF EK WLY + RGIDH
Sbjct: 182 LPITSIRGLGGKLGEEIIDLLGLPTEGDVAGFRSSESDLQEHFGEKLGEWLYNLLRGIDH 241
Query: 303 EPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLT 362
EPV R + KS+G K FPGKT L+T +DV HW+ LA E+ RLEDD N RR + L
Sbjct: 242 EPVKPRPLPKSMGSSKNFPGKTALST-EDVQHWLLVLASELNSRLEDDRYENNRRPKTLV 300
Query: 363 VSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSAS 422
+S Q G SRS AL Y Q IV+ + ++I N PL L LS +
Sbjct: 301 LSLRQ--RGDGVRRSRSCALPRYDAQKIVKDAFKLIKAINEEGLGLAWNYPLTLLSLSFT 358
Query: 423 K 423
K
Sbjct: 359 K 359
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Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA. Length = 359 |
| >gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
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| >gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases | Back alignment and domain information |
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| >gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa | Back alignment and domain information |
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| >gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family | Back alignment and domain information |
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| >gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 | Back alignment and domain information |
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| >gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional | Back alignment and domain information |
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| >gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed | Back alignment and domain information |
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| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional | Back alignment and domain information |
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| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
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| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V | Back alignment and domain information |
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| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
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| >gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal | Back alignment and domain information |
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| >gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
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| >gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V | Back alignment and domain information |
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| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
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| >gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
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| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
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| >gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| KOG2095|consensus | 656 | 100.0 | ||
| PRK01810 | 407 | DNA polymerase IV; Validated | 100.0 | |
| PRK02794 | 419 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03103 | 409 | DNA polymerase IV; Reviewed | 100.0 | |
| PRK03858 | 396 | DNA polymerase IV; Validated | 100.0 | |
| cd01701 | 404 | PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi | 100.0 | |
| PRK14133 | 347 | DNA polymerase IV; Provisional | 100.0 | |
| PTZ00205 | 571 | DNA polymerase kappa; Provisional | 100.0 | |
| cd01702 | 359 | PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal | 100.0 | |
| PRK01216 | 351 | DNA polymerase IV; Validated | 100.0 | |
| PRK03348 | 454 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03609 | 422 | umuC DNA polymerase V subunit UmuC; Reviewed | 100.0 | |
| PRK03352 | 346 | DNA polymerase IV; Validated | 100.0 | |
| cd00424 | 343 | PolY Y-family of DNA polymerases. Y-family DNA pol | 100.0 | |
| cd01703 | 379 | PolY_Pol_iota DNA Polymerase iota. Pol iota, also | 100.0 | |
| cd03586 | 334 | PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, | 100.0 | |
| PRK02406 | 343 | DNA polymerase IV; Validated | 100.0 | |
| cd01700 | 344 | PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. | 100.0 | |
| COG0389 | 354 | DinP Nucleotidyltransferase/DNA polymerase involve | 100.0 | |
| KOG2094|consensus | 490 | 100.0 | ||
| cd03468 | 335 | PolY_like DNA Polymerase Y-family. Y-family DNA po | 100.0 | |
| KOG2093|consensus | 1016 | 100.0 | ||
| PF00817 | 149 | IMS: impB/mucB/samB family; InterPro: IPR001126 In | 100.0 | |
| PF11799 | 127 | IMS_C: impB/mucB/samB family C-terminal domain; In | 99.38 | |
| PF11798 | 32 | IMS_HHH: IMS family HHH motif; InterPro: IPR024728 | 98.18 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 97.54 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 96.79 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.24 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 94.99 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 92.26 | |
| PF03118 | 66 | RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha | 90.25 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 90.2 | |
| PF08827 | 59 | DUF1805: Domain of unknown function (DUF1805); Int | 89.92 | |
| COG3743 | 133 | Uncharacterized conserved protein [Function unknow | 89.46 | |
| PF04994 | 81 | TfoX_C: TfoX C-terminal domain; InterPro: IPR00707 | 89.28 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 89.14 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 88.44 | |
| PF14229 | 122 | DUF4332: Domain of unknown function (DUF4332) | 87.33 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 85.07 | |
| COG2251 | 474 | Predicted nuclease (RecB family) [General function | 82.3 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 81.64 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 81.1 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 80.53 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 80.13 |
| >KOG2095|consensus | Back alignment and domain information |
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Probab=100.00 E-value=1.6e-73 Score=657.80 Aligned_cols=403 Identities=42% Similarity=0.636 Sum_probs=343.6
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
..|||+||||||||||||++++|+|+++||||+||+ +||||||+||++||+++|++.||+++||+|+++|||...
T Consensus 14 ~~RVIahVDMDcFyaQVEq~r~P~lr~~PlaVvQ~n-----gIIAVsYeARa~GV~R~M~v~EAK~kCPqLvlv~v~~~~ 88 (656)
T KOG2095|consen 14 SLRVIAHVDMDCFYAQVEQRRNPELRSKPLAVVQYN-----GIIAVSYEARAFGVKRLMTVDEAKKKCPQLVLVHVPVAR 88 (656)
T ss_pred ccceEEEecchhhHHHHHhhcCchhccCceEEEEee-----eEEEEehhhhhhCCchhhhHHHHHhhCCceEEeeccccc
Confidence 469999999999999999999999999999999997 699999999999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhh----ccccccccccccccccCCCCCCc-----
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS----IGHIAASQLSNTFVVGFGPDNND----- 152 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~----~~~~~~~~L~~~~~~g~~~~~~~----- 152 (1041)
+++|...||.++.+|+++|..|.|+||++++||+|||+|.++.+++.+ .++.....+..+++.++++...-
T Consensus 89 ~ka~~~~YR~as~ev~~~L~~y~~viek~~~dea~ld~tasvder~q~L~s~~~~~~~~~~p~~~~~~~~s~~~~~~~~~ 168 (656)
T KOG2095|consen 89 EKADLPKYREASEEVKESLEPYRPVIEKASKDEAFLDLTASVDERLQDLQSDEFNMLLEEPPYGLIYGLPSALPNTREAT 168 (656)
T ss_pred ccchhhhhhhhHHHHHHHHhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhccchhcccCCccccchhhhhh
Confidence 999999999999999999999999999999999999999999988765 34556666666777777763311
Q ss_pred ----hhhhhhcchhhcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCC
Q psy16215 153 ----EDARKAGVMEWLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQ 228 (1041)
Q Consensus 153 ----e~~r~~g~~~W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPn 228 (1041)
+..+-+.+..|+... ..+|++++|++|+.||++||++|+.+||||||+|||+||+|||||+.++|||
T Consensus 169 ~~e~~~~~ee~~~~~~~~~---------d~~~~d~~L~iGa~Iv~EiR~~i~~elg~tCSAGIa~NKmLAKLvsg~nKPn 239 (656)
T KOG2095|consen 169 NSENPLMREEIVSLWIEND---------DFDWDDVRLLIGAQIVKEIRDAIKLELGYTCSAGIAHNKMLAKLVSGRNKPN 239 (656)
T ss_pred hhccccchhhHhhhhhhcc---------ccCchhhhhHHHHHHHHHHHHHHHHHhCceeeccccccHHHHHHHhccCCCC
Confidence 111223334454221 1248999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccchHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccc
Q psy16215 229 KQSILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNAR 308 (1041)
Q Consensus 229 Gqtvl~p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~ 308 (1041)
.||||+...+++||..|||.++|++|+++++.+++.|||.++|||++++...|++.||.+.|.|||..++|+|.++|.++
T Consensus 240 qQTil~~~~v~~ll~slpi~k~~~lGGk~G~~lie~LGi~~vgdl~~fse~~L~~~fg~~~g~~l~~la~Gid~s~V~pr 319 (656)
T KOG2095|consen 240 QQTILPNTYVQDLLDSLPITKIRTLGGKLGEELIEVLGIDSVGDLQQFSETQLQKKFGEKNGTWLRNLARGIDNSPVRPR 319 (656)
T ss_pred cceecchHHHHHHHHhCCCceeeeccchHHHHHHHHhCCchHHHHHhcCHHHHHHhhCcchhHHHHHHhcccCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEE--EEEcCCCCceeEEEEEeCCCCc
Q psy16215 309 LVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVS--FTQETDGKVNSCSRSIALASYK 386 (1041)
Q Consensus 309 ~ppKSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLk--LR~sd~g~~~s~SRSl~LpT~D 386 (1041)
..||||+++++|++...+.+.+++..||.+++.++..||-.++.++.+.+.++.++ +... -++...+..++
T Consensus 320 ~~pkSig~~K~Fpg~~~~~~~~~l~~wl~~la~el~~Rl~~d~~en~r~as~l~~~~~~~~~-------ss~~~~~~~~d 392 (656)
T KOG2095|consen 320 GLPKSIGSEKNFPGKRSRKSLEELQRWLNQLAEELAERLGKDRNENKRRASTLVVSRSLFKL-------SSQITGLVDYD 392 (656)
T ss_pred CCCcchhhhhcCCCccccccHHHHHHHHHHHHHHHHHHHHhhhhhhccccceEEeecccccc-------ccccccccchh
Confidence 99999999999998667899999999999999999999999988999999999998 2211 12333333455
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCCCCC
Q psy16215 387 LQDIVEVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSPLGS 429 (1041)
Q Consensus 387 ae~L~~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp~~~ 429 (1041)
...++.....++..+. +..+...+..+++.+..|.....
T Consensus 393 ~~~~~~~~~~~ir~~~----~~~~~~~~~~l~~~~~sf~~~~~ 431 (656)
T KOG2095|consen 393 DHKKVYDKLVKIRNIV----DVSFSFKLTLLSVYFKSFQAKNE 431 (656)
T ss_pred hhhhhhhhhhhcccch----hcccchhHHHHHHHHhccccccc
Confidence 5555555555444111 12245556667777777765443
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| >PRK01810 DNA polymerase IV; Validated | Back alignment and domain information |
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| >PRK02794 DNA polymerase IV; Provisional | Back alignment and domain information |
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| >PRK03103 DNA polymerase IV; Reviewed | Back alignment and domain information |
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| >PRK03858 DNA polymerase IV; Validated | Back alignment and domain information |
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| >cd01701 PolY_Rev1 DNA polymerase Rev1 | Back alignment and domain information |
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| >PRK14133 DNA polymerase IV; Provisional | Back alignment and domain information |
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| >PTZ00205 DNA polymerase kappa; Provisional | Back alignment and domain information |
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| >cd01702 PolY_Pol_eta DNA Polymerase eta | Back alignment and domain information |
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| >PRK01216 DNA polymerase IV; Validated | Back alignment and domain information |
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| >PRK03348 DNA polymerase IV; Provisional | Back alignment and domain information |
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| >PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
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| >PRK03352 DNA polymerase IV; Validated | Back alignment and domain information |
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| >cd00424 PolY Y-family of DNA polymerases | Back alignment and domain information |
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| >cd01703 PolY_Pol_iota DNA Polymerase iota | Back alignment and domain information |
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| >cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa | Back alignment and domain information |
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| >PRK02406 DNA polymerase IV; Validated | Back alignment and domain information |
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| >cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V | Back alignment and domain information |
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| >COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >KOG2094|consensus | Back alignment and domain information |
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| >cd03468 PolY_like DNA Polymerase Y-family | Back alignment and domain information |
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| >KOG2093|consensus | Back alignment and domain information |
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| >PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA | Back alignment and domain information |
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| >PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases | Back alignment and domain information |
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| >PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] | Back alignment and domain information |
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| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
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| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
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| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
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| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
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| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
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| >PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals | Back alignment and domain information |
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| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
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| >PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets | Back alignment and domain information |
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| >COG3743 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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| >PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae | Back alignment and domain information |
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| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
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| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
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| >PF14229 DUF4332: Domain of unknown function (DUF4332) | Back alignment and domain information |
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| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
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| >COG2251 Predicted nuclease (RecB family) [General function prediction only] | Back alignment and domain information |
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| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
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| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
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| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
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| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1041 | ||||
| 3mr6_A | 435 | Human Dna Polymerase Eta - Dna Ternary Complex With | 1e-110 | ||
| 3mr2_A | 435 | Human Dna Polymerase Eta In Complex With Normal Dna | 1e-110 | ||
| 2dpi_A | 420 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 1e-32 | ||
| 3h40_A | 389 | Binary Complex Of Human Dna Polymerase Iota With Te | 1e-32 | ||
| 2alz_A | 390 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 1e-32 | ||
| 1t3n_A | 388 | Structure Of The Catalytic Core Of Dna Polymerase I | 2e-32 | ||
| 3gv5_B | 420 | Human Dna Polymerase Iota In Complex With T Templat | 3e-31 | ||
| 3pzp_A | 517 | Human Dna Polymerase Kappa Extending Opposite A Cis | 2e-18 | ||
| 1t94_A | 459 | Crystal Structure Of The Catalytic Core Of Human Dn | 4e-18 | ||
| 2oh2_A | 508 | Ternary Complex Of Human Dna Polymerase Length = 50 | 4e-18 | ||
| 3mfh_A | 520 | Dna Polymerase Eta In Complex With Undamaged Dna Le | 7e-16 | ||
| 2r8j_A | 554 | Structure Of The Eukaryotic Dna Polymerase Eta In C | 2e-15 | ||
| 1jih_A | 513 | Yeast Dna Polymerase Eta Length = 513 | 3e-15 | ||
| 2wtf_A | 536 | Dna Polymerase Eta In Complex With The Cis-Diammine | 3e-15 | ||
| 4f4y_A | 362 | Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length | 3e-15 | ||
| 4f4w_A | 361 | Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Le | 7e-15 | ||
| 3bq0_A | 354 | Pre-insertion Binary Complex Of Dbh Dna Polymerase | 2e-13 | ||
| 1k1q_A | 354 | Crystal Structure Of A Dinb Family Error Prone Dna | 2e-13 | ||
| 4f50_A | 361 | Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length | 2e-13 | ||
| 2uvr_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 3e-13 | ||
| 2uvr_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 3e-06 | ||
| 2bq3_A | 358 | Dna Adduct Bypass Polymerization By Sulfolobus Solf | 4e-13 | ||
| 2bq3_A | 358 | Dna Adduct Bypass Polymerization By Sulfolobus Solf | 3e-06 | ||
| 1jxl_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 4e-13 | ||
| 1jxl_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 3e-06 | ||
| 4gc7_A | 359 | Crystal Structure Of Dpo4 In Complex With S-mc-dadp | 4e-13 | ||
| 4gc7_A | 359 | Crystal Structure Of Dpo4 In Complex With S-mc-dadp | 3e-06 | ||
| 2uvv_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 4e-13 | ||
| 2uvv_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 4e-06 | ||
| 2w9b_A | 358 | Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo | 4e-13 | ||
| 2w9b_A | 358 | Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo | 3e-06 | ||
| 3qz7_A | 360 | T-3 Ternary Complex Of Dpo4 Length = 360 | 4e-13 | ||
| 3qz7_A | 360 | T-3 Ternary Complex Of Dpo4 Length = 360 | 3e-06 | ||
| 2asd_A | 360 | Oxog-Modified Insertion Ternary Complex Length = 36 | 4e-13 | ||
| 2asd_A | 360 | Oxog-Modified Insertion Ternary Complex Length = 36 | 4e-06 | ||
| 3v6h_A | 348 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 4e-13 | ||
| 3v6h_A | 348 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 4e-06 | ||
| 3pvx_A | 347 | Binary Complex Of Aflatoxin B1 Adduct Modified Dna | 4e-13 | ||
| 3pvx_A | 347 | Binary Complex Of Aflatoxin B1 Adduct Modified Dna | 4e-06 | ||
| 2imw_P | 348 | Mechanism Of Template-Independent Nucleotide Incorp | 4e-13 | ||
| 2imw_P | 348 | Mechanism Of Template-Independent Nucleotide Incorp | 4e-06 | ||
| 4f4z_B | 361 | Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt | 5e-13 | ||
| 4f4z_B | 361 | Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt | 1e-06 | ||
| 3v6k_A | 347 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 6e-13 | ||
| 3v6k_A | 347 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 5e-06 | ||
| 1jx4_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 7e-13 | ||
| 1jx4_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 8e-06 | ||
| 3gii_A | 341 | Dpo4 Extension Ternary Complex With Disordered A Op | 1e-11 | ||
| 3gii_A | 341 | Dpo4 Extension Ternary Complex With Disordered A Op | 6e-06 | ||
| 2ago_A | 341 | Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide | 1e-11 | ||
| 2ago_A | 341 | Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide | 6e-06 | ||
| 2rdi_A | 342 | Snapshots Of A Y-family Dna Polymerase In Replicati | 1e-11 | ||
| 2rdi_A | 342 | Snapshots Of A Y-family Dna Polymerase In Replicati | 6e-06 | ||
| 1im4_A | 221 | Crystal Structure Of A Dinb Homolog (Dbh) Lesion By | 2e-11 | ||
| 3pr4_A | 341 | Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa | 1e-10 | ||
| 3pr4_A | 341 | Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa | 6e-06 | ||
| 3gqc_A | 504 | Structure Of Human Rev1-Dna-Dntp Ternary Complex Le | 6e-07 | ||
| 4dez_A | 356 | Structure Of Msdpo4 Length = 356 | 2e-06 | ||
| 4dez_A | 356 | Structure Of Msdpo4 Length = 356 | 6e-05 |
| >pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 | Back alignment and structure |
|
| >pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 | Back alignment and structure |
| >pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 420 | Back alignment and structure |
| >pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template UT Length = 389 | Back alignment and structure |
| >pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 390 | Back alignment and structure |
| >pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In Complex With Dna And Dttp Length = 388 | Back alignment and structure |
| >pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna And Incoming Ddadp Length = 420 | Back alignment and structure |
| >pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 | Back alignment and structure |
| >pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna Polymerase Kappa Length = 459 | Back alignment and structure |
| >pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 | Back alignment and structure |
| >pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna Length = 520 | Back alignment and structure |
| >pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex With 1,2- D(gpg)-cisplatin Containing Dna Length = 554 | Back alignment and structure |
| >pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta Length = 513 | Back alignment and structure |
| >pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link Length = 536 | Back alignment and structure |
| >pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length = 362 | Back alignment and structure |
| >pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Length = 361 | Back alignment and structure |
| >pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase Length = 354 | Back alignment and structure |
| >pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna Polymerase From Sulfolobus Solfataricus Length = 354 | Back alignment and structure |
| >pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length = 361 | Back alignment and structure |
| >pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 | Back alignment and structure |
| >pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 | Back alignment and structure |
| >pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 | Back alignment and structure |
| >pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 | Back alignment and structure |
| >pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 | Back alignment and structure |
| >pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 | Back alignment and structure |
| >pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 | Back alignment and structure |
| >pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 | Back alignment and structure |
| >pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 | Back alignment and structure |
| >pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 | Back alignment and structure |
| >pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 | Back alignment and structure |
| >pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 | Back alignment and structure |
| >pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 | Back alignment and structure |
| >pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 | Back alignment and structure |
| >pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 | Back alignment and structure |
| >pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 | Back alignment and structure |
| >pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 | Back alignment and structure |
| >pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 | Back alignment and structure |
| >pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 | Back alignment and structure |
| >pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 | Back alignment and structure |
| >pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 | Back alignment and structure |
| >pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 | Back alignment and structure |
| >pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 | Back alignment and structure |
| >pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 | Back alignment and structure |
| >pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 | Back alignment and structure |
| >pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 | Back alignment and structure |
| >pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus Length = 221 | Back alignment and structure |
| >pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 | Back alignment and structure |
| >pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 | Back alignment and structure |
| >pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex Length = 504 | Back alignment and structure |
| >pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 | Back alignment and structure |
| >pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-134
Identities = 201/434 (46%), Positives = 273/434 (62%), Gaps = 16/434 (3%)
Query: 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMR 61
R++AL+DMDCF+ QVE + NP L KP AVVQY +WKGGGIIAV+YEAR GVTR M
Sbjct: 8 QDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMW 67
Query: 62 GDEAKQHCPEIELCRVPSVRGKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTD 121
D+AK+ CP++ L +V RGKA+++KYR A EV+ ++S F+ ++ERASIDEAY+DLT
Sbjct: 68 ADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTS 126
Query: 122 VVHERMKSI--GHIAASQLSNTFVVGFGPD-------NNDEDARKAGVMEWLGQVYSDTD 172
V ER++ + I+A L +T++ G E RK G+ +WL + D
Sbjct: 127 AVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQID-- 184
Query: 173 TSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSI 232
T +L + VIVEE+RAA+ +T F CSAGI+HNKVLAKL CGL+KP +Q++
Sbjct: 185 ----NLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL 240
Query: 233 LPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASW 292
+ SV L++ + I+K+R LGGKLG V+E L M EL +F+ QLQSHF EK SW
Sbjct: 241 VSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSW 300
Query: 293 LYYIARGIDHEPVNARLVSKSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLT 352
LY + RGI+H+PV R + K+IGC K FPGKT LATR+ V W+ +LA E+ ERL D
Sbjct: 301 LYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRN 360
Query: 353 LNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIVEVSMQVINKTNSAPPISDLTP 412
N R A L VS + D +++S R AL Y + + VI N++ ++ +P
Sbjct: 361 DNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSP 420
Query: 413 PLLFLGLSASKFSP 426
PL L L A+KFS
Sbjct: 421 PLTMLFLCATKFSA 434
|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens} Length = 39 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| 4ecq_A | 435 | DNA polymerase ETA; transferase-DNA complex; HET: | 100.0 | |
| 3osn_A | 420 | DNA polymerase IOTA; hoogsteen base PAIR, protein- | 100.0 | |
| 1jx4_A | 352 | DNA polymerase IV (family Y); protein-DNA complex, | 100.0 | |
| 4dez_A | 356 | POL IV 1, DNA polymerase IV 1; Y-family, transfera | 100.0 | |
| 3bq0_A | 354 | POL IV, DBH, DNA polymerase IV; Y-family, lesion b | 100.0 | |
| 4f4y_A | 362 | POL IV, DNA polymerase IV; Y-family polymerase, tr | 100.0 | |
| 3gqc_A | 504 | DNA repair protein REV1; protein-DNA complex, DNA | 100.0 | |
| 3mfi_A | 520 | DNA polymerase ETA; DNA damage, DNA repair, DNA re | 100.0 | |
| 3pzp_A | 517 | DNA polymerase kappa; DNA nucleotidyltransferase, | 100.0 | |
| 1t94_A | 459 | Polymerase (DNA directed) kappa; replication, DNA | 100.0 | |
| 2aq4_A | 434 | DNA repair protein REV1; polymerase, PAD, N-digit, | 100.0 | |
| 1im4_A | 221 | DBH; DNA polymerase PALM, thumb, fingers, helix-ha | 100.0 | |
| 2i5o_A | 39 | DNA polymerase ETA; zinc finger, DNA polymerase,PO | 99.39 | |
| 1unn_C | 115 | POL IV, DNA polymerase IV; beta-clamp, translesion | 99.19 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 96.27 | |
| 2zvk_U | 26 | DNA polymerase ETA, proliferating cell nuclear ant | 96.01 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 95.29 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 94.9 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 91.78 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 91.77 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 91.64 | |
| 3bqs_A | 93 | Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s | 90.09 | |
| 3mab_A | 93 | Uncharacterized protein; NYSGXRC, PSI-2, structura | 89.96 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 89.63 | |
| 1z3e_B | 73 | DNA-directed RNA polymerase alpha chain; bacterial | 89.13 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 87.58 | |
| 2nrt_A | 220 | Uvrabc system protein C; UVRC, endonuclease, RNAse | 87.24 | |
| 3gfk_B | 79 | DNA-directed RNA polymerase subunit alpha; protein | 85.88 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 85.19 | |
| 3k4g_A | 86 | DNA-directed RNA polymerase subunit alpha; bacteri | 84.07 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 82.91 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 82.25 | |
| 1qw2_A | 102 | Conserved hypothetical protein TA1206; structural | 81.89 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 81.83 |
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-79 Score=699.48 Aligned_cols=417 Identities=48% Similarity=0.808 Sum_probs=364.4
Q ss_pred CCcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCC
Q psy16215 2 TSRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVR 81 (1041)
Q Consensus 2 ~~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~ 81 (1041)
..|+|+||||||||||||++++|+|+++||||++++.+.+|+|+||||+||++||++||++++|+++||++++++++..+
T Consensus 8 ~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~~ 87 (435)
T 4ecq_A 8 QDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESR 87 (435)
T ss_dssp CSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEET
T ss_pred CCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEecccccc
Confidence 46899999999999999999999999999999998655678999999999999999999999999999999999887777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhh--ccccccccccccccccCCCCCC-------c
Q psy16215 82 GKADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKS--IGHIAASQLSNTFVVGFGPDNN-------D 152 (1041)
Q Consensus 82 ~k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~--~~~~~~~~L~~~~~~g~~~~~~-------~ 152 (1041)
+++||+.|+++|++|+++|.+|+ .||++||||+|||||+++..++.+ ..+.....+.++++.|++.... .
T Consensus 88 ~~~~~~~Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 166 (435)
T 4ecq_A 88 GKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQK 166 (435)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHHHHHHHTTCCCCGGGCTTEEETTCSCCCC-----CSH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC-ceeecccceEEEECccchhhcchhccccccccccccccccccCCCcccccccccch
Confidence 78999999999999999999999 999999999999999998766533 1122223344556666654321 2
Q ss_pred hhhhhhcchhhcccc-cCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceE
Q psy16215 153 EDARKAGVMEWLGQV-YSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQS 231 (1041)
Q Consensus 153 e~~r~~g~~~W~~~L-Fg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqt 231 (1041)
++.+..++..|...+ ++ ..+|++++|++|..+|++||++|++++|||||||||+||++||||++++||+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~ 239 (435)
T 4ecq_A 167 EGMRKQGLFQWLDSLQID-------NLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQT 239 (435)
T ss_dssp HHHHHHHHHHHHHHCCTT-------CTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEE
T ss_pred hhhhcccccccccccccc-------cccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceE
Confidence 444555556664321 11 2357889999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHhhhcCCccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCC
Q psy16215 232 ILPQSSVSMLYANLSIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS 311 (1041)
Q Consensus 232 vl~p~~v~~fL~~LPI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~pp 311 (1041)
+++++++.+||+++||++|||||+++++++|+.+||+|++||+++|+..|+++||.+.|.+||+.|+|+|.++|.+..++
T Consensus 240 vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ 319 (435)
T 4ecq_A 240 LVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLP 319 (435)
T ss_dssp ECCGGGHHHHHHTCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSC
T ss_pred EEehhHHHHHHhhCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCC
Confidence 99999999999999999999999999887789999999999999999999999997799999999999999999998899
Q ss_pred cceeeEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhchhccCceeeEEEEEEEEcCCCCceeEEEEEeCCCCcHHHHH
Q psy16215 312 KSIGCCKRFPGKTCLATRQDVSHWIQELADEVCERLEDDLTLNKRRAQLLTVSFTQETDGKVNSCSRSIALASYKLQDIV 391 (1041)
Q Consensus 312 KSIssErTF~~r~dLtd~eeL~~~L~~LaeELaeRLRr~~~~ngr~artLTLkLR~sd~g~~~s~SRSl~LpT~Dae~L~ 391 (1041)
|||+++++|+.+.++.+.+++..+|..|+++|+.||+++..++++.|++|+|++++.++....+++|+++++.+++..|+
T Consensus 320 ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~~~~~R~~~l~~~~~~~i~ 399 (435)
T 4ecq_A 320 KTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMS 399 (435)
T ss_dssp SCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSSCSEEEEEECCSCCHHHHH
T ss_pred CeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCCceeEEeccCCCCCHHHHH
Confidence 99999999996324789999999999999999999998755568999999999999875445678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCEEEEEEEEcCCCC
Q psy16215 392 EVSMQVINKTNSAPPISDLTPPLLFLGLSASKFSP 426 (1041)
Q Consensus 392 ~~A~~LL~rL~~~~~~~a~~~pVRlIGVsLSdLvp 426 (1041)
..|+.||++++..+.+..|..|||.|||++++|++
T Consensus 400 ~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 400 HDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp HHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhccccccCCCCeeEEEEEEeeccc
Confidence 99999999998532234567799999999999975
|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ... | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... | Back alignment and structure |
|---|
| >4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 | Back alignment and structure |
|---|
| >2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B | Back alignment and structure |
|---|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
| >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A | Back alignment and structure |
|---|
| >3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1 | Back alignment and structure |
|---|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1041 | ||||
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 3e-59 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 5e-56 | |
| d1zeta2 | 273 | e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom | 7e-55 | |
| d1jx4a2 | 240 | e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul | 2e-34 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 2e-23 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 1e-06 | |
| d1jiha1 | 120 | d.240.1.1 (A:390-509) DNA polymerase eta {Baker's | 5e-16 |
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 206 bits (525), Expect = 3e-59
Identities = 75/371 (20%), Positives = 131/371 (35%), Gaps = 71/371 (19%)
Query: 4 RIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGD 63
IA IDM+ F+ QVE P+ VQ+N IIAV+Y AR G++R
Sbjct: 24 ACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWN-----SIIAVSYAARKYGISRMDTIQ 78
Query: 64 EAKQHCPEIELCRVPSVRG---------------------------KADISKYRNAGREV 96
EA + C + + K + YR R+
Sbjct: 79 EALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKA 138
Query: 97 IAVLSEFSNIVERASIDEAYIDLTDVVHERMKS------IGHIAASQLSNTFVVGFGPDN 150
+ + ++VERASIDE ++DL + + G + + F N
Sbjct: 139 LKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGN 198
Query: 151 NDEDARKAGVMEWLGQVYSDTDTSLMENTEDFQE-----LAIAGVIVEEIRAAVLSKTQF 205
D ++ + E + + + D E + + LA+ + + IR ++ +
Sbjct: 199 YDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGY 258
Query: 206 HCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVS--MLYANLSIKKVRHLGGKLGDEVVE 263
S G++ K + KL KP Q+I+ + + I LGG LG E+++
Sbjct: 259 TTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELID 318
Query: 264 TLQCSTMLELEKF------SLKQLQSHF--------------------EEKTASWLYYIA 297
L ++ + QL+ A L+ ++
Sbjct: 319 VLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLS 378
Query: 298 RGIDHEPVNAR 308
RG P+++R
Sbjct: 379 RGRYGLPLSSR 389
|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1t94a2 | 333 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1jx4a2 | 240 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1im4a_ | 209 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1unnc_ | 111 | DNA polymerase IV {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1t94a1 | 105 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 99.27 | |
| d1jx4a1 | 101 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.21 | |
| d1jiha1 | 120 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 99.19 | |
| d1k1sa1 | 105 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.15 | |
| d1zeta1 | 115 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 98.85 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.98 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.34 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.32 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 96.01 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 95.14 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 94.69 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 94.09 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 93.62 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 92.88 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 91.11 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 90.76 | |
| d1doqa_ | 69 | C-terminal domain of RNA polymerase alpha subunit | 89.88 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 89.11 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 88.28 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 88.1 | |
| d1lb2b_ | 72 | C-terminal domain of RNA polymerase alpha subunit | 85.84 | |
| d1z3eb1 | 67 | C-terminal domain of RNA polymerase alpha subunit | 84.84 | |
| d1qw2a_ | 102 | Hypothetical protein Ta1206 {Archaeon Thermoplasma | 80.18 |
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase iota species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-63 Score=537.82 Aligned_cols=272 Identities=35% Similarity=0.546 Sum_probs=237.4
Q ss_pred CcEEEEEeCCchhHHhHhhhCCCCCCCcEEEEecCCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEeeccCCCC
Q psy16215 3 SRIIALIDMDCFYCQVECKLNPSLHGKPLAVVQYNTWKGGGIIAVNYEARHKGVTRHMRGDEAKQHCPEIELCRVPSVRG 82 (1041)
Q Consensus 3 ~RvI~HIDmD~FYASVE~~~~PeLrgkPVaV~q~n~~~~g~VIAvNYeARa~GVK~GMpl~eArkLCPdLvvV~VP~~~~ 82 (1041)
+|+|+||||||||||||++++|+|+++||||.++ |+|+||||+||++||++||++++|+++||++++++
T Consensus 1 sRvI~hiD~d~FyasvE~~~~p~l~~~PvaV~~~-----g~v~a~sy~AR~~GVk~gm~~~~A~~~cP~l~v~~------ 69 (273)
T d1zeta2 1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQK-----YLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN------ 69 (273)
T ss_dssp CCCEEEEEETTHHHHHHHHHCGGGTTSCCEEESS-----SBEEEECHHHHTTTCCSCBCHHHHHHTCTTCCCEE------
T ss_pred CcEEEEEcCChHHHHHHhHhCccccCCcEEEcCC-----cEEEEeCHHHHHhCCCCCCCHHHHHHhCccccccc------
Confidence 6999999999999999999999999999999764 68999999999999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEeccceEEEEcchhHHHHHhhccccccccccccccccCCCCCCchhhhhhcchh
Q psy16215 83 KADISKYRNAGREVIAVLSEFSNIVERASIDEAYIDLTDVVHERMKSIGHIAASQLSNTFVVGFGPDNNDEDARKAGVME 162 (1041)
Q Consensus 83 k~Dld~Yr~aS~kI~eIL~~fSP~VE~aSIDEafLDLT~~v~~~L~~~~~~~~~~L~~~~~~g~~~~~~~e~~r~~g~~~ 162 (1041)
++|++.|+++|++|+++|.+|+|.||++||||+|||+|+.+..++.+... ..+......
T Consensus 70 ~~~~~~Y~~~S~~i~~~l~~~~~~ve~~SiDE~flDlt~~~~~~~~~~~~---~~~~~~~~~------------------ 128 (273)
T d1zeta2 70 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQS---DELSAVTVS------------------ 128 (273)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCS---SGGGGCCCC------------------
T ss_pred cccHHHHHHHHHHHHHHHHHhCCeeEEEcCcceEEecccccccccccccc---chhhccccc------------------
Confidence 26999999999999999999999999999999999999998765532110 000000000
Q ss_pred hcccccCCCcccccccchhHHhhhHHHHHHHHHHHHHHhhhCCceeEEEeCCHHHHHHhccCCCCCceEEeccchHHHhh
Q psy16215 163 WLGQVYSDTDTSLMENTEDFQELAIAGVIVEEIRAAVLSKTQFHCSAGIAHNKVLAKLVCGLHKPQKQSILPQSSVSMLY 242 (1041)
Q Consensus 163 W~~~LFg~~d~p~v~~~~~~~~L~~g~~IA~~IR~~I~~elGlt~SVGIA~NKlLAKLAS~~aKPnGqtvl~p~~v~~fL 242 (1041)
+.+|+..+.. ..++.+..+..|..+|+.||++|++++||+||+|||+||+|||||++++||+||+++.++.+..||
T Consensus 129 --~~~~~~~~~~--~~d~~~~~~~~~~~~a~~ir~~I~~~~g~~~svGIa~nk~lAKlAs~~~KP~g~~vi~~~~~~~~l 204 (273)
T d1zeta2 129 --GHVYNNQSIN--LLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLI 204 (273)
T ss_dssp --SEEGGGCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHH
T ss_pred --cccccccccc--chhhhhhhcccHHHHHHHHHHHHHHHhCCCeEeeecCcHHHHHHHhhccccccccchhhhhHHHHH
Confidence 0123222111 125667778889999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CccccccCCHHHHHHHHHhCCCccchhhhhCCHHHHHHHhhhhhHHHHHHHHcCCCCcccccccCC
Q psy16215 243 ANL-SIKKVRHLGGKLGDEVVETLQCSTMLELEKFSLKQLQSHFEEKTASWLYYIARGIDHEPVNARLVS 311 (1041)
Q Consensus 243 ~~L-PI~kIpGIG~K~a~rLL~~LGI~TIGDLa~Lp~~~L~krFG~k~G~~L~~~aRGiD~epV~p~~pp 311 (1041)
+++ ||++|||||++++++ |+.+||+|++||++++...|+++||...|.+||++++|+|.+||.+..+|
T Consensus 205 ~~l~pv~~l~GiG~~~~~~-L~~~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~a~G~D~~pV~~~~~P 273 (273)
T d1zeta2 205 HSLNHIKEIPGIGYKTAKC-LEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPP 273 (273)
T ss_dssp TTCSSGGGSTTCCHHHHHH-HHTTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSC
T ss_pred hcCcchHHhcCCCHHHHHH-HHHhCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHHHcCcCCCCCCCCCCC
Confidence 998 899999999999998 79999999999999999999999997789999999999999999987665
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| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
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| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
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| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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