Psyllid ID: psy1621

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI
ccccccccccccccccEEccccccccEEEEEEccccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccEEEEccccccccccccccEEEEccccccccccEEccccccccccccEEEEEccHHHHHHHHHHHHHHccccEEccccccccc
cccHHHHccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccccEEEEEHHHHcccccccEEEEEEEcccccHHHHEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHc
meelqmvcyppghgacadVHVNVGArigagfnadinvEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVInydlpsnrenyihrigrggrfgrkgvainfvtaedkrtlKDTEQFYNTRIeempmnvadli
MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRrvlivgdsmtrIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLlargidvqqVSLVinydlpsnrenYIHRigrggrfgrkGVAInfvtaedkrtlkdteqfyntrieempmnvadli
MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHrigrggrfgrkgVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI
*****MVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYN**************
****QMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNV**LI
MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI
MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNV****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEELQMVCYPPGHGACADVHVNVGARIGAGFNADINVEACADVDVNAAELRRRVLIVGDSMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query224 2.2.26 [Sep-21-2011]
A4QU31401 ATP-dependent RNA helicas N/A N/A 0.767 0.428 0.735 3e-72
Q9P735400 ATP-dependent RNA helicas N/A N/A 0.767 0.43 0.729 3e-72
Q4IAA0401 ATP-dependent RNA helicas yes N/A 0.767 0.428 0.729 5e-72
P27639402 Eukaryotic initiation fac yes N/A 0.767 0.427 0.724 2e-71
Q10I26404 DEAD-box ATP-dependent RN yes N/A 0.767 0.425 0.724 3e-71
Q5VNM3404 DEAD-box ATP-dependent RN yes N/A 0.767 0.425 0.724 3e-71
P0CQ72396 ATP-dependent RNA helicas yes N/A 0.763 0.431 0.716 5e-71
P0CQ73396 ATP-dependent RNA helicas N/A N/A 0.763 0.431 0.716 5e-71
Q6Z2Z4414 Eukaryotic initiation fac no N/A 0.767 0.415 0.724 7e-71
Q1DTB3399 ATP-dependent RNA helicas N/A N/A 0.767 0.431 0.712 9e-71
>sp|A4QU31|FAL1_MAGO7 ATP-dependent RNA helicase FAL1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=FAL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 150/174 (86%), Gaps = 2/174 (1%)

Query: 53  RVLIVGDSMTR--IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM 110
           R+L+  D +T   ++Q++I IE+EDWKFDTLCDLY TL+ITQAVIFCNTRRKVDWLT+ M
Sbjct: 227 RILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKM 286

Query: 111 LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 170
            +  FTVS+MHGDM Q  RD IM+ FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPSN
Sbjct: 287 REANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSN 346

Query: 171 RENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           RENYIHRIGR GRFGRKGVAINFVT+ED R L+D E +Y+T+I+EMPMNVADLI
Sbjct: 347 RENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLI 400
ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA.
Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fal-1 PE=3 SV=2 Back     alignment and function description
>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FAL1 PE=3 SV=1 Back     alignment and function description
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1 Back     alignment and function description
>sp|Q10I26|RH34_ORYSJ DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1 Back     alignment and function description
>sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1 Back     alignment and function description
>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=FAL1 PE=3 SV=1 Back     alignment and function description
>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=FAL1 PE=3 SV=1 Back     alignment and function description
>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1 Back     alignment and function description
>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis (strain RS) GN=FAL1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
2370593 413 translation initiation factor eIF4A II [ 0.767 0.416 0.798 6e-76
348690313 573 hypothetical protein PHYSODRAFT_358814 [ 0.767 0.300 0.781 7e-76
325188273 465 predicted protein putative [Albugo laiba 0.767 0.369 0.781 9e-76
325188274 414 predicted protein putative [Albugo laiba 0.767 0.415 0.781 1e-75
325188272 470 predicted protein putative [Albugo laiba 0.767 0.365 0.781 1e-75
323453007306 hypothetical protein AURANDRAFT_70153 [A 0.767 0.562 0.775 1e-75
301093191 411 ATP-dependent RNA helicase eIF4A, putati 0.767 0.418 0.781 1e-75
242007840 449 eukaryotic initiation factor 4A-II, puta 0.763 0.380 0.803 9e-75
428178789 406 hypothetical protein GUITHDRAFT_159541 [ 0.767 0.423 0.775 2e-74
193664366 411 PREDICTED: eukaryotic initiation factor 0.812 0.442 0.736 4e-74
>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis] Back     alignment and taxonomy information
 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 153/174 (87%), Gaps = 2/174 (1%)

Query: 53  RVLIVGDSMTR--IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM 110
           R+L+  + +T   IRQFYI +ERE+WK DTLCDLY TL+ITQAVIF NTRRKVDWLTE M
Sbjct: 240 RILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 299

Query: 111 LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 170
             ++FTVSA+HGDMDQ  RDVIMR+FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+N
Sbjct: 300 HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 359

Query: 171 RENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           RENYIHRIGRGGRFG KGVAIN VT +DKRTLKD E FYNT +EEMPMNVADLI
Sbjct: 360 RENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKDIETFYNTTVEEMPMNVADLI 413

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|348690313|gb|EGZ30127.1| hypothetical protein PHYSODRAFT_358814 [Phytophthora sojae] Back     alignment and taxonomy information
>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14] Back     alignment and taxonomy information
>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14] Back     alignment and taxonomy information
>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14] Back     alignment and taxonomy information
>gi|323453007|gb|EGB08879.1| hypothetical protein AURANDRAFT_70153 [Aureococcus anophagefferens] Back     alignment and taxonomy information
>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] Back     alignment and taxonomy information
>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|428178789|gb|EKX47663.1| hypothetical protein GUITHDRAFT_159541 [Guillardia theta CCMP2712] Back     alignment and taxonomy information
>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
UNIPROTKB|Q3SZ54406 EIF4A1 "Eukaryotic initiation 0.767 0.423 0.741 2e-63
UNIPROTKB|F1P895406 EIF4A1 "Uncharacterized protei 0.767 0.423 0.741 2e-63
UNIPROTKB|J9NU36423 EIF4A1 "Uncharacterized protei 0.767 0.406 0.741 2e-63
UNIPROTKB|J9NY67406 EIF4A1 "Uncharacterized protei 0.767 0.423 0.741 2e-63
UNIPROTKB|P60842406 EIF4A1 "Eukaryotic initiation 0.767 0.423 0.741 2e-63
UNIPROTKB|A6M928406 EIF4A1 "Uncharacterized protei 0.767 0.423 0.741 2e-63
MGI|MGI:95303406 Eif4a1 "eukaryotic translation 0.767 0.423 0.741 2e-63
UNIPROTKB|Q6P3V8406 Eif4a1 "Protein Eif4a1" [Rattu 0.767 0.423 0.741 2e-63
ZFIN|ZDB-GENE-040426-2802411 eif4a2 "eukaryotic translation 0.821 0.447 0.693 3.3e-63
UNIPROTKB|Q8JFP1407 EIF4A2 "Eukaryotic initiation 0.767 0.422 0.729 5.4e-63
UNIPROTKB|Q3SZ54 EIF4A1 "Eukaryotic initiation factor 4A-I" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 129/174 (74%), Positives = 142/174 (81%)

Query:    53 RVLIVGDSMTR--IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM 110
             R+L+  + +T   IRQFYI +ERE+WK DTLCDLY TL+ITQAVIF NTRRKVDWLTE M
Sbjct:   233 RILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 292

Query:   111 LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 170
               ++FTVSAMHGDMDQ  RDVIMR+FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+N
Sbjct:   293 HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352

Query:   171 RENYIHXXXXXXXXXXXXVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
             RENYIH            VAIN VT EDKRTL+D E FYNT IEEMP+NVADLI
Sbjct:   353 RENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406
GO:0005524 "ATP binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
UNIPROTKB|F1P895 EIF4A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NU36 EIF4A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NY67 EIF4A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P60842 EIF4A1 "Eukaryotic initiation factor 4A-I" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6M928 EIF4A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:95303 Eif4a1 "eukaryotic translation initiation factor 4A1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P3V8 Eif4a1 "Protein Eif4a1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2802 eif4a2 "eukaryotic translation initiation factor 4A, isoform 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8JFP1 EIF4A2 "Eukaryotic initiation factor 4A-II" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41377IF4A2_ARATH3, ., 6, ., 4, ., 1, 30.70680.76780.4174yesN/A
P0CQ72FAL1_CRYNJ3, ., 6, ., 4, ., 1, 30.71670.76330.4318yesN/A
Q4IAA0FAL1_GIBZE3, ., 6, ., 4, ., 1, 30.72980.76780.4289yesN/A
Q4WEB4FAL1_ASPFU3, ., 6, ., 4, ., 1, 30.71260.76780.4321yesN/A
Q5VNM3RH2_ORYSJ3, ., 6, ., 4, ., 1, 30.72410.76780.4257yesN/A
B5FZY7IF4A3_TAEGU3, ., 6, ., 4, ., 1, 30.69540.76780.4195yesN/A
Q5AUL4FAL1_EMENI3, ., 6, ., 4, ., 1, 30.71260.76780.4310yesN/A
A6M931IF4A3_PIG3, ., 6, ., 4, ., 1, 30.69540.76780.4184yesN/A
Q2UAK1FAL1_ASPOR3, ., 6, ., 4, ., 1, 30.71260.76780.4321yesN/A
Q2NL22IF4A3_BOVIN3, ., 6, ., 4, ., 1, 30.69540.76780.4184yesN/A
P41376IF4A1_ARATH3, ., 6, ., 4, ., 1, 30.70110.76780.4174yesN/A
Q91VC3IF4A3_MOUSE3, ., 6, ., 4, ., 1, 30.69540.76780.4184yesN/A
A5AAE5FAL1_ASPNC3, ., 6, ., 4, ., 1, 30.71260.76780.4310yesN/A
Q7ZVA6IF4A3_DANRE3, ., 6, ., 4, ., 1, 30.69540.76780.4236yesN/A
P38919IF4A3_HUMAN3, ., 6, ., 4, ., 1, 30.69540.76780.4184yesN/A
Q5ZM36IF4A3_CHICK3, ., 6, ., 4, ., 1, 30.69540.76780.4174yesN/A
B7ZTW1IF4A3_XENTR3, ., 6, ., 4, ., 1, 30.69540.76780.4144yesN/A
P27639IF4A_CAEEL3, ., 6, ., 4, ., 1, 30.72410.76780.4278yesN/A
Q3B8Q2IF4A3_RAT3, ., 6, ., 4, ., 1, 30.69540.76780.4184yesN/A
Q10I26RH34_ORYSJ3, ., 6, ., 4, ., 1, 30.72410.76780.4257yesN/A
Q5R5F5IF4A1_PONAB3, ., 6, ., 4, ., 1, 30.81030.76780.4236yesN/A
Q10055FAL1_SCHPO3, ., 6, ., 4, ., 1, 30.68960.76780.4365yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 1e-101
COG0513 513 COG0513, SrmB, Superfamily II DNA and RNA helicase 8e-56
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 5e-44
PRK11776460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 2e-39
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 8e-35
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-29
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-28
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 3e-28
PRK11634 629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 1e-26
PRK10590456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 6e-26
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 3e-25
PRK04537 572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 1e-23
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 4e-22
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 6e-19
COG0514 590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 7e-17
TIGR00614 470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 6e-14
TIGR01389 591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 3e-12
PRK11057 607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 8e-11
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 1e-07
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 1e-07
COG1205 851 COG1205, COG1205, Distinct helicase family with a 2e-07
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 3e-06
COG1202 830 COG1202, COG1202, Superfamily II helicase, archaea 5e-06
COG0556663 COG0556, UvrB, Helicase subunit of the DNA excisio 5e-06
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 1e-05
PLN03137 1195 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 2e-05
TIGR00631655 TIGR00631, uvrb, excinuclease ABC, B subunit 3e-04
cd09639353 cd09639, Cas3_I, CRISPR/Cas system-associated prot 6e-04
TIGR01587358 TIGR01587, cas3_core, CRISPR-associated helicase C 7e-04
TIGR00643630 TIGR00643, recG, ATP-dependent DNA helicase RecG 0.001
COG1200677 COG1200, RecG, RecG-like helicase [DNA replication 0.001
TIGR00595505 TIGR00595, priA, primosomal protein N' 0.002
PRK13766 773 PRK13766, PRK13766, Hef nuclease; Provisional 0.004
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information 
 Score =  299 bits (768), Expect = e-101
 Identities = 126/175 (72%), Positives = 152/175 (86%), Gaps = 2/175 (1%)

Query: 52  RRVLIVGDSMTR--IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTES 109
           +R+L+  D +T   IRQFY+ +E+E+WKFDTLCDLY TL+ITQA+I+CNTRRKVD+LT+ 
Sbjct: 227 KRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKK 286

Query: 110 MLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPS 169
           M +++FTVS MHGDMDQ  RD+IMR+FRSGS+RVLITTDLLARGIDVQQVSLVINYDLP+
Sbjct: 287 MHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346

Query: 170 NRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           + ENYIHRIGR GRFGRKGVAINFVT +D   LK+ E+ YNT+IEEMPM VAD +
Sbjct: 347 SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADYL 401

Length = 401
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit Back     alignment and domain information
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 Back     alignment and domain information
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 Back     alignment and domain information
>gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG Back     alignment and domain information
>gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>gnl|CDD|233040 TIGR00595, priA, primosomal protein N' Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 224
KOG0328|consensus400 100.0
KOG0330|consensus476 100.0
KOG0326|consensus459 100.0
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0333|consensus673 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0331|consensus519 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0332|consensus477 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0340|consensus442 100.0
KOG0342|consensus543 100.0
KOG0345|consensus 567 99.97
KOG0327|consensus397 99.97
KOG0336|consensus629 99.97
KOG0341|consensus610 99.97
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.97
KOG0335|consensus482 99.97
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.97
KOG0343|consensus 758 99.97
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.96
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.96
KOG0338|consensus 691 99.96
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.96
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.96
KOG0339|consensus 731 99.95
KOG0344|consensus593 99.95
KOG0346|consensus 569 99.95
KOG0348|consensus 708 99.93
PRK10689 1147 transcription-repair coupling factor; Provisional 99.93
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.92
KOG4284|consensus 980 99.92
KOG0347|consensus 731 99.92
KOG0334|consensus 997 99.92
PHA02653 675 RNA helicase NPH-II; Provisional 99.91
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.91
PRK13767 876 ATP-dependent helicase; Provisional 99.9
KOG0337|consensus 529 99.9
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.9
KOG0350|consensus620 99.9
PRK02362 737 ski2-like helicase; Provisional 99.9
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.9
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.9
PRK04914 956 ATP-dependent helicase HepA; Validated 99.9
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.89
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.89
KOG0351|consensus 941 99.89
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.89
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.89
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.88
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.87
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.87
COG1202 830 Superfamily II helicase, archaea-specific [General 99.87
PRK00254 720 ski2-like helicase; Provisional 99.87
PRK01172 674 ski2-like helicase; Provisional 99.86
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.84
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.84
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.84
PRK05298652 excinuclease ABC subunit B; Provisional 99.83
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.83
KOG0352|consensus 641 99.83
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.82
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.82
PRK13766 773 Hef nuclease; Provisional 99.82
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.81
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.79
KOG0329|consensus387 99.78
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.78
PRK09401 1176 reverse gyrase; Reviewed 99.77
PRK14701 1638 reverse gyrase; Provisional 99.77
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.76
PHA02558501 uvsW UvsW helicase; Provisional 99.76
smart0049082 HELICc helicase superfamily c-terminal domain. 99.76
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.76
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.75
KOG0354|consensus 746 99.75
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 99.74
KOG0353|consensus 695 99.74
PRK09694 878 helicase Cas3; Provisional 99.7
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.7
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.69
KOG0349|consensus725 99.69
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.68
COG1204 766 Superfamily II helicase [General function predicti 99.68
KOG0953|consensus 700 99.66
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.64
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.64
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.63
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.62
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.61
COG1205 851 Distinct helicase family with a unique C-terminal 99.6
PRK05580 679 primosome assembly protein PriA; Validated 99.58
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 99.56
KOG0950|consensus 1008 99.56
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.55
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.55
KOG0951|consensus 1674 99.51
KOG0384|consensus 1373 99.48
KOG4150|consensus 1034 99.46
KOG0387|consensus 923 99.46
KOG0922|consensus 674 99.46
KOG0385|consensus 971 99.46
KOG0390|consensus776 99.43
KOG0952|consensus 1230 99.43
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.42
KOG0923|consensus 902 99.35
KOG0947|consensus 1248 99.35
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.31
PRK12326 764 preprotein translocase subunit SecA; Reviewed 99.3
KOG0392|consensus1549 99.28
KOG0948|consensus 1041 99.27
KOG0389|consensus941 99.25
KOG0391|consensus 1958 99.22
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 99.19
KOG0924|consensus 1042 99.18
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.17
KOG0388|consensus1185 99.15
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.13
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.1
KOG1123|consensus776 99.09
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 99.03
KOG0926|consensus 1172 98.96
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 98.96
KOG1000|consensus689 98.92
CHL00122 870 secA preprotein translocase subunit SecA; Validate 98.91
KOG0920|consensus 924 98.86
KOG1002|consensus791 98.86
KOG0386|consensus 1157 98.84
KOG1015|consensus 1567 98.79
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 98.78
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.76
KOG0949|consensus 1330 98.71
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.71
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.71
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.7
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.68
COG4096 875 HsdR Type I site-specific restriction-modification 98.61
KOG4439|consensus901 98.59
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.57
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 98.51
KOG0925|consensus 699 98.51
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.44
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.41
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 98.4
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.29
smart00492141 HELICc3 helicase superfamily c-terminal domain. 98.02
smart00491142 HELICc2 helicase superfamily c-terminal domain. 97.99
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 97.98
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.81
COG4889 1518 Predicted helicase [General function prediction on 97.76
KOG1016|consensus 1387 97.74
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.73
KOG1001|consensus674 97.59
PF13871 278 Helicase_C_4: Helicase_C-like 97.5
PRK05580 679 primosome assembly protein PriA; Validated 97.12
KOG0951|consensus 1674 97.07
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 97.05
TIGR00595 505 priA primosomal protein N'. All proteins in this f 96.9
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 96.8
PRK14873 665 primosome assembly protein PriA; Provisional 96.68
TIGR00643 630 recG ATP-dependent DNA helicase RecG. 96.62
COG1198 730 PriA Primosomal protein N' (replication factor Y) 96.58
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 96.54
KOG2340|consensus698 96.49
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 96.34
PF10593239 Z1: Z1 domain; InterPro: IPR018310 This entry repr 96.23
PRK14873665 primosome assembly protein PriA; Provisional 96.16
PRK14701 1638 reverse gyrase; Provisional 95.72
PRK10689 1147 transcription-repair coupling factor; Provisional 95.7
KOG0921|consensus 1282 95.32
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 95.29
COG1200 677 RecG RecG-like helicase [DNA replication, recombin 95.24
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 94.97
KOG0701|consensus 1606 94.87
KOG1133|consensus821 94.7
KOG0298|consensus1394 94.69
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 94.63
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 94.07
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 94.01
KOG0347|consensus 731 93.73
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 93.47
PRK11776 460 ATP-dependent RNA helicase DbpA; Provisional 93.44
KOG0338|consensus 691 93.35
KOG0331|consensus 519 93.16
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 93.1
COG1111 542 MPH1 ERCC4-like helicases [DNA replication, recomb 92.86
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 91.77
PRK11192 434 ATP-dependent RNA helicase SrmB; Provisional 91.53
KOG0339|consensus 731 91.44
KOG1513|consensus 1300 91.25
KOG0383|consensus696 91.0
KOG0330|consensus 476 91.0
PRK09401 1176 reverse gyrase; Reviewed 90.91
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 90.58
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 90.09
PRK04837 423 ATP-dependent RNA helicase RhlB; Provisional 89.94
PRK01297 475 ATP-dependent RNA helicase RhlB; Provisional 89.63
PRK10590 456 ATP-dependent RNA helicase RhlE; Provisional 89.24
KOG0350|consensus 620 88.69
cd0152490 RHOD_Pyr_redox Member of the Rhodanese Homology Do 88.29
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 88.26
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 87.96
smart00450100 RHOD Rhodanese Homology Domain. An alpha beta fold 86.67
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 86.58
PRK13766 773 Hef nuclease; Provisional 86.45
KOG0329|consensus 387 86.18
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 84.61
PTZ00110 545 helicase; Provisional 84.6
cd0152996 4RHOD_Repeats Member of the Rhodanese Homology Dom 84.13
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 83.79
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 83.71
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 83.46
KOG0389|consensus 941 80.69
cd01518101 RHOD_YceA Member of the Rhodanese Homology Domain 80.35
PF04364137 DNA_pol3_chi: DNA polymerase III chi subunit, HolC 80.34
cd0153495 4RHOD_Repeat_3 Member of the Rhodanese Homology Do 80.07
>KOG0328|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-40  Score=259.87  Aligned_cols=221  Identities=58%  Similarity=0.883  Sum_probs=203.6

Q ss_pred             CcccceeecCCCCccccccccC-ccCcccccccccccHhhhhhhhhhHHHhhhhhhh----ccCcccceeEEEEEecCCc
Q psy1621           1 MEELQMVCYPPGHGACADVHVN-VGARIGAGFNADINVEACADVDVNAAELRRRVLI----VGDSMTRIRQFYIYIERED   75 (224)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sATi~~~~~~~~~~~~~~l~~~~~i----~~~~~~~i~~~~~~~~~~~   75 (224)
                      .||++-++-.....++.++... |...|..++|||+|.++.+   +...++.+|+.+    .+-+.+.++++|+.++.++
T Consensus       175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eile---mt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee  251 (400)
T KOG0328|consen  175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILE---MTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE  251 (400)
T ss_pred             eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHH---HHHHhcCCceeEEEecCCCchhhhhhheeeechhh
Confidence            4788888888777788887753 6688999999999999864   444777788765    2346678999999999999


Q ss_pred             cHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCcccCCC
Q psy1621          76 WKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGID  155 (224)
Q Consensus        76 ~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ilv~t~~~~~Gvd  155 (224)
                      ||.+.|.+++..+.-.+++|||||++.++++.+.++..++.+..+||+|+++||.++..+|++|+.+||++|++.++|+|
T Consensus       252 wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD  331 (400)
T KOG0328|consen  252 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID  331 (400)
T ss_pred             hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q psy1621         156 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI  224 (224)
Q Consensus       156 i~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  224 (224)
                      +|.++.||+||.|-+.+.|.||+||.||.|+.|.++.|+..+|...++.+++++...+.++|+++.+++
T Consensus       332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i  400 (400)
T KOG0328|consen  332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI  400 (400)
T ss_pred             cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999998875

>KOG0330|consensus Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>KOG0385|consensus Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0925|consensus Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2340|consensus Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0921|consensus Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>KOG1133|consensus Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG1513|consensus Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>smart00450 RHOD Rhodanese Homology Domain Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2 Back     alignment and domain information
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
3eiq_A414 Crystal Structure Of Pdcd4-eif4a Length = 414 8e-71
2zu6_A388 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 1e-70
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 3e-62
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 4e-62
2hyi_C413 Structure Of The Human Exon Junction Complex With A 4e-62
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 6e-62
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 7e-62
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 7e-62
2vso_A395 Crystal Structure Of A Translation Initiation Compl 2e-54
1fuu_A394 Yeast Initiation Factor 4a Length = 394 2e-53
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 4e-53
3fmp_B479 Crystal Structure Of The Nucleoporin Nup214 In Comp 2e-28
2rb4_A175 Crystal Structure Of The Helicase Domain Of Human D 2e-28
3fht_A412 Crystal Structure Of Human Dbp5 In Complex With Amp 2e-28
3ews_A445 Human Dead-Box Rna-Helicase Ddx19 In Complex With A 2e-28
3g0h_A424 Human Dead-box Rna Helicase Ddx19, In Complex With 2e-28
3fho_B508 Structure Of S. Pombe Dbp5 Length = 508 6e-25
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 3e-24
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 1e-23
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 1e-23
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 6e-23
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 8e-23
2kbf_A187 Solution Structure Of Carboxyl-Terminal Domain Of D 1e-22
3peu_A188 S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To 8e-22
3gfp_A189 Structure Of The C-Terminal Domain Of The Dead-Box 1e-21
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 8e-18
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 9e-18
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 1e-17
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 1e-17
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 1e-17
3i32_A 300 Dimeric Structure Of A Hera Helicase Fragment Inclu 2e-17
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 6e-17
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 6e-17
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 7e-17
2jgn_A185 Ddx3 Helicase Domain Length = 185 4e-16
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 2e-13
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 4e-12
4db4_A256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 2e-09
4db2_C257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 2e-09
4db2_A257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 2e-09
3sqx_A512 Structure Of Mss116p (Nte And C-Tail Double Deletio 2e-09
3i5x_A563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 3e-09
3sqw_A 579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 4e-09
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 4e-08
1oyy_A 523 Structure Of The Recq Catalytic Core Bound To Atp-G 7e-08
1oyw_A 523 Structure Of The Recq Catalytic Core Length = 523 1e-07
4gl2_A 699 Structural Basis For Dsrna Duplex Backbone Recognit 2e-05
1gm5_A780 Structure Of Recg Bound To Three-Way Dna Junction L 1e-04
2v1x_A 591 Crystal Structure Of Human Recq-Like Dna Helicase L 6e-04
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 Back     alignment and structure 
Iteration: 1

 Score =  263 bits (671), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 142/174 (81%), Gaps = 2/174 (1%)
Query: 53  RVLIVGDSMT--RIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESM 110
           R+L+  + +T   IRQFYI +ERE+WK DTLCDLY TL+ITQAVIF NTRRKVDWLTE M
Sbjct: 241 RILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 300
Query: 111 LKKEFTVSAMHGDMDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSN 170
             ++FTVSAMHGDMDQ  RDVIMR+FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+N
Sbjct: 301 HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 360
Query: 171 RENYIHXXXXXXXXXXXXVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           RENYIH            VAIN VT EDKRTL+D E FYNT IEEMP+NVADLI
Sbjct: 361 RENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 Back     alignment and structure
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 Back     alignment and structure
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 Back     alignment and structure
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 Back     alignment and structure
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Back     alignment and structure
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 Back     alignment and structure
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 Back     alignment and structure
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 Back     alignment and structure
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 1e-112
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 1e-110
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 1e-110
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 1e-110
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 1e-109
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 1e-105
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 1e-103
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 1e-101
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 2e-99
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 5e-98
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 4e-97
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 2e-96
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 9e-93
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 1e-59
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 1e-58
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 2e-57
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 2e-56
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 8e-51
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 2e-49
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 5e-49
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 3e-48
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 3e-48
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 1e-47
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 8e-46
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 1e-32
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 4e-22
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-16
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 6e-12
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 3e-11
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 4e-11
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-11
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 8e-11
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 1e-10
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-10
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 1e-08
3o8b_A 666 HCV NS3 protease/helicase; ntpase, RNA, translocat 6e-07
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 1e-06
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 1e-04
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
 Score =  317 bits (814), Expect = e-112
 Identities = 106/161 (65%), Positives = 138/161 (85%)

Query: 64  IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
           I+QFY+ +E E++K++ L DLY ++S+TQAVIFCNTRRKV+ LT  +   +FTVSA++ D
Sbjct: 4   IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 63

Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
           + Q  RD IM++FRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP+N+ENYIHRIGRGGR
Sbjct: 64  LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 123

Query: 184 FGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           FGRKGVAINFVT ED   +++ E+FY+T+IEE+P ++A L+
Sbjct: 124 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 164
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 100.0
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.98
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.98
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 99.97
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.97
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 99.97
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.97
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.94
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.97
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.97
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.96
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.96
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.96
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.96
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.94
1yks_A 440 Genome polyprotein [contains: flavivirin protease 99.92
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.91
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.91
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.91
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.9
2whx_A 618 Serine protease/ntpase/helicase NS3; transcription 99.9
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.9
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.9
4gl2_A 699 Interferon-induced helicase C domain-containing P; 99.9
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.9
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.9
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.89
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.89
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.89
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.89
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.89
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.89
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.89
2jlq_A 451 Serine protease subunit NS3; ribonucleoprotein, nu 99.89
2wv9_A 673 Flavivirin protease NS2B regulatory subunit, FLAV 99.88
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.88
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.88
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.88
2v6i_A 431 RNA helicase; membrane, hydrolase, transmembrane, 99.88
2z83_A 459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.88
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.87
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.87
3o8b_A 666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.87
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.87
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.87
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.87
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.87
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 99.86
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.85
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.83
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.83
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.83
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.82
3h1t_A590 Type I site-specific restriction-modification syst 99.82
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.82
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.8
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.78
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.36
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.02
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 98.77
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 98.66
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 98.46
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.2
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 96.6
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 96.17
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 95.29
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 95.14
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 94.65
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 94.42
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 94.09
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 94.04
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 94.0
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 93.94
1xti_A 391 Probable ATP-dependent RNA helicase P47; alpha-bet 92.84
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 92.45
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 91.77
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 91.72
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 91.56
3bor_A237 Human initiation factor 4A-II; translation initiat 90.79
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 90.73
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 90.57
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 90.25
1wp9_A 494 ATP-dependent RNA helicase, putative; ATPase, DNA 89.59
1fuu_A 394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 89.18
1hv8_A 367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 89.11
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 88.92
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 88.84
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 88.64
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 88.23
2db3_A 434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 88.12
2i4i_A 417 ATP-dependent RNA helicase DDX3X; DEAD, structural 87.64
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 87.45
3foj_A100 Uncharacterized protein; protein SSP1007, structur 87.41
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 87.36
3eme_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 86.43
3tbk_A 555 RIG-I helicase domain; DECH helicase, ATP binding, 86.29
4a2p_A 556 RIG-I, retinoic acid inducible protein I; hydrolas 86.27
4a2q_A 797 RIG-I, retinoic acid inducible protein I; hydrolas 86.24
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 86.23
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 85.96
1wv9_A94 Rhodanese homolog TT1651; CDC25, phosphatase, sulf 85.36
3iwh_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 84.86
3eiq_A 414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 84.78
3flh_A124 Uncharacterized protein LP_1913; alpha-beta protei 84.71
1s2m_A 400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 84.65
2l82_A162 Designed protein OR32; structural genomics, northe 84.62
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 84.14
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 83.67
3hix_A106 ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q 83.51
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 83.03
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 82.89
2j0s_A 410 ATP-dependent RNA helicase DDX48; mRNA processing, 82.61
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 82.55
2q5c_A196 NTRC family transcriptional regulator; structural 82.18
1gmx_A108 GLPE protein; transferase, rhodanese, sulfurtransf 81.3
2z0m_A 337 337AA long hypothetical ATP-dependent RNA helicase 81.15
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 80.83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=3.2e-34  Score=215.40  Aligned_cols=163  Identities=65%  Similarity=1.078  Sum_probs=149.4

Q ss_pred             cceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcCCc
Q psy1621          62 TRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSGSS  141 (224)
Q Consensus        62 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~  141 (224)
                      +++.|+|..++.++.|.+.|.+++...+++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.
T Consensus         2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~   81 (165)
T 1fuk_A            2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS   81 (165)
T ss_dssp             --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred             CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence            46889999998777799999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q psy1621         142 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVA  221 (224)
Q Consensus       142 ~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (224)
                      +|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.++.++.+.+...+..+++.++.+++++|.++.
T Consensus        82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (165)
T 1fuk_A           82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA  161 (165)
T ss_dssp             SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred             EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccC
Q psy1621         222 DLI  224 (224)
Q Consensus       222 ~l~  224 (224)
                      +++
T Consensus       162 ~~~  164 (165)
T 1fuk_A          162 TLL  164 (165)
T ss_dssp             TTT
T ss_pred             hhc
Confidence            664
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 224
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-46
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 1e-41
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 3e-35
d1a1va2 299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 5e-33
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-31
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 2e-28
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 3e-27
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 7e-25
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 1e-23
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-19
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 2e-18
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 2e-18
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 9e-15
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 4e-13
d1c4oa2174 c.37.1.19 (A:410-583) Nucleotide excision repair e 5e-13
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 6e-09
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 2e-05
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 5e-04
d1yksa2 299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 9e-04
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  148 bits (375), Expect = 3e-46
 Identities = 106/161 (65%), Positives = 138/161 (85%)

Query: 64  IRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGD 123
           I+QFY+ +E E++K++ L DLY ++S+TQAVIFCNTRRKV+ LT  +   +FTVSA++ D
Sbjct: 1   IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60

Query: 124 MDQNARDVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGR 183
           + Q  RD IM++FRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP+N+ENYIHRIGRGGR
Sbjct: 61  LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120

Query: 184 FGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMNVADLI 224
           FGRKGVAINFVT ED   +++ E+FY+T+IEE+P ++A L+
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 161
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 100.0
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 100.0
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.96
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.95
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.92
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.91
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.9
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.88
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.86
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.85
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.84
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 99.83
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.78
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.74
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.74
d1yksa2 299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.63
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 99.62
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 99.36
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 97.5
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 97.31
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 94.13
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 94.02
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 91.75
d2eyqa2117 Transcription-repair coupling factor, TRCF {Escher 91.57
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 90.04
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 90.0
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 89.54
d1yt8a4130 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 86.88
d1tq1a_119 Thiosulfate sulfurtransferase/Senescence-associate 86.16
d1gmxa_108 Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 85.35
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 84.98
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 84.52
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 84.35
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 84.21
d1urha2120 3-mercaptopyruvate sulfurtransferase {Escherichia 80.87
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=236.89  Aligned_cols=165  Identities=71%  Similarity=1.198  Sum_probs=159.5

Q ss_pred             cccceeEEEEEecCCccHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHhhcC
Q psy1621          60 SMTRIRQFYIYIEREDWKFDTLCDLYGTLSITQAVIFCNTRRKVDWLTESMLKKEFTVSAMHGDMDQNARDVIMRQFRSG  139 (224)
Q Consensus        60 ~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~  139 (224)
                      +.++++|+|+.++.++.|++.|.++++...+.++||||++++.++.+++.|...++.+..+||+++.++|..+++.|++|
T Consensus         4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g   83 (168)
T d2j0sa2           4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG   83 (168)
T ss_dssp             SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence            45799999999998888999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCcccCCCCCCCCEEEEeCCCCChhHHHHHHhhccCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcc
Q psy1621         140 SSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTAEDKRTLKDTEQFYNTRIEEMPMN  219 (224)
Q Consensus       140 ~~~ilv~t~~~~~Gvdi~~~~~vi~~~~p~s~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (224)
                      +.++||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.++.++.+.+...++.+++.++..++++|.+
T Consensus        84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~~  163 (168)
T d2j0sa2          84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN  163 (168)
T ss_dssp             SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred             CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccC
Q psy1621         220 VADLI  224 (224)
Q Consensus       220 ~~~l~  224 (224)
                      +.|++
T Consensus       164 ~~dii  168 (168)
T d2j0sa2         164 VADLI  168 (168)
T ss_dssp             CTTTC
T ss_pred             hHHhC
Confidence            99875
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure