Psyllid ID: psy16225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MDSPATMGIKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccccccccccEccccccccccccccHHcccccccccccccccccEcccccHcccEcccccccccccccccccccccHHHHHHccccccccccccccccccccccccHEEcccccccccccEcccccccccccccEEEEEccccccccccccccccccccccHEEEEEEEccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEccHHHHHHHHHHccccccEEccccccccEEccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdspatmgikmtpppttsphnhmmplpgnniKMINTFmetptlasmgikmspppptsphqlqsggnhmmplggnnenhhnnhynsypmphmqtgysrdyllrrddyannihhpppvppppvqppgndmffhhpvdplsqhsmlyhhhhrepvysnmdlnaaypstnamqsagthgAFFRYMrqpikqdmtclwidtpgprktcgkMFNNMHEIVTHLTvehvggpectthacfwdgcprngrpfkakYKLVNHIRvhtgekpfpcpfptcgkvfarsenlkihkrthtev
Flexible Loop (DISEMBL)
mdspatmgikmtpppttsphnhMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHtgekpfpcpfptCGKVfarsenlkihkrthtev
Low Complexity Region (SEG)
MDSPATMGIKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSGGNHMMPLGGnnenhhnnhynSYPMPHMQTGYSRDYLLRRDDYANNIHHpppvppppvqppGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV
Disordered region (IsUnstruct)
*************************************************************************************************DYLLR**********************************************************************THGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARS*************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************KQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT**
Disordered Region (DISEMBL)
********IKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKM************SGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKI********
Disordered Region (DISPRO)
*******GIKMTPPPTTSPHNHMMPLPGNNIKMINTFMET*****************PHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSPATMGIKMTPPPTTSPHNHMMPLPGNNIKMINTFMETPTLASMGIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
P39768	609	Pair-rule protein odd-pai	yes	N/A	0.427	0.203	0.741	1e-52
Q8JJC0	444	Zinc finger protein ZIC 1	yes	N/A	0.393	0.256	0.760	1e-51
P46684	447	Zinc finger protein ZIC 1	yes	N/A	0.393	0.255	0.760	4e-51
Q15915	447	Zinc finger protein ZIC 1	yes	N/A	0.393	0.255	0.760	4e-51
O73689	443	Zinc finger protein ZIC 1	N/A	N/A	0.482	0.316	0.643	1e-50
A0JC51	530	Zinc finger protein ZIC 4	N/A	N/A	0.393	0.215	0.765	6e-50
Q91689	503	Zinc finger protein ZIC 2	N/A	N/A	0.393	0.226	0.754	1e-49
Q6DJQ6	441	Zinc finger protein ZIC 3	no	N/A	0.393	0.258	0.726	1e-49
O57311	441	Zinc finger protein ZIC 3	N/A	N/A	0.393	0.258	0.717	3e-49
O95409	532	Zinc finger protein ZIC 2	no	N/A	0.393	0.214	0.745	4e-49

>sp|P39768|OPA_DROME Pair-rule protein odd-paired OS=Drosophila melanogaster GN=opa PE=2 SV=2

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 110/139 (79%), Gaps = 15/139 (10%)

Query: 164 STNAMQSAGTHGAFFRYMR-QP------IKQDMTCLWIDT-------PGPRKTCGKMFNN 209
           + +AM  AG  GAF RYMR QP      +KQ+M CLWID        PG RKTC K+F++
Sbjct: 179 AMSAMHPAGA-GAFLRYMRHQPASSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHS 237

Query: 210 MHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPT 269
           MHEIVTHLTVEHVGGPECTTHACFW GC RNGRPFKAKYKLVNHIRVHTGEKPF CP P 
Sbjct: 238 MHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFACPHPG 297

Query: 270 CGKVFARSENLKIHKRTHT 288
           CGKVFARSENLKIHKRTHT
Sbjct: 298 CGKVFARSENLKIHKRTHT 316

Transcription factor essential for parasegmental subdivision of the embryo. It is involved in the activation of wingless (wg) in odd parasegments. It is also required for the timely activation of wg in the remaining parasegments and for the timely activation of engrailed (en) in all parasegments.
Drosophila melanogaster (taxid: 7227)

>sp|Q8JJC0|ZIC1_CHICK Zinc finger protein ZIC 1 OS=Gallus gallus GN=ZIC1 PE=1 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 100/117 (85%), Gaps = 3/117 (2%)

Query: 175 GAFFRYMRQPIKQDMTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           GAFFRYMRQPIKQ++ C WI+      P+K+C K F+ MHE+VTH+TVEHVGGPE + H 
Sbjct: 208 GAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHI 267

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 268 CFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 324

Acts as a transcriptional activator. Involved in neurogenesis. Plays important roles in the early stage of organogenesis of the CNS, as well as during dorsal spinal cord development and maturation of the cerebellum. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'.

Gallus gallus (taxid: 9031)

>sp|P46684|ZIC1_MOUSE Zinc finger protein ZIC 1 OS=Mus musculus GN=Zic1 PE=1 SV=2

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 100/117 (85%), Gaps = 3/117 (2%)

Query: 175 GAFFRYMRQPIKQDMTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           GAFFRYMRQPIKQ++ C WI+      P+K+C K F+ MHE+VTH+TVEHVGGPE + H 
Sbjct: 211 GAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHI 270

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 271 CFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 327

Acts as a transcriptional activator. Involved in neurogenesis. Plays important roles in the early stage of organogenesis of the CNS, as well as during dorsal spinal cord development and maturation of the cerebellum. Involved in the spatial distribution of mossy fiber (MF) neurons within the pontine gray nucleus (PGN). Plays a role in the regulation of MF axon pathway choice. Promotes MF migration towards ipsilaterally-located cerebellar territories. May have a role in shear flow mechanotransduction in osteocytes. Retains nuclear GLI1 and GLI3 in the cytoplasm. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'.

Mus musculus (taxid: 10090)

>sp|Q15915|ZIC1_HUMAN Zinc finger protein ZIC 1 OS=Homo sapiens GN=ZIC1 PE=2 SV=2

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 100/117 (85%), Gaps = 3/117 (2%)

Query: 175 GAFFRYMRQPIKQDMTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           GAFFRYMRQPIKQ++ C WI+      P+K+C K F+ MHE+VTH+TVEHVGGPE + H 
Sbjct: 211 GAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHI 270

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 271 CFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 327

Acts as a transcriptional activator. Involved in neurogenesis. Plays important roles in the early stage of organogenesis of the CNS, as well as during dorsal spinal cord development and maturation of the cerebellum. Involved in the spatial distribution of mossy fiber (MF) neurons within the pontine gray nucleus (PGN). Plays a role in the regulation of MF axon pathway choice. Promotes MF migration towards ipsilaterally-located cerebellar territories. May have a role in shear flow mechanotransduction in osteocytes. Retains nuclear GLI1 and GLI3 in the cytoplasm. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'.

Homo sapiens (taxid: 9606)

>sp|O73689|ZIC1_XENLA Zinc finger protein ZIC 1 OS=Xenopus laevis GN=zic1 PE=2 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 108/143 (75%), Gaps = 3/143 (2%)

Query: 149 REPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWID---TPGPRKTCGK 205
           R   Y++  L+   P    M +    GAFFRYMRQPIKQ++ C WI+      P+K+C K
Sbjct: 181 RSEHYASSQLHGYGPMNMNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNK 240

Query: 206 MFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
            F+ MHE+VTH+TVEHVGGPE + H C W+ CPR G+PFKAKYKL+NHIRVHTGEKPFPC
Sbjct: 241 TFSTMHELVTHVTVEHVGGPEQSNHICVWEECPREGKPFKAKYKLINHIRVHTGEKPFPC 300

Query: 266 PFPTCGKVFARSENLKIHKRTHT 288
           PFP CGKVFARSENLKIHKRTHT
Sbjct: 301 PFPGCGKVFARSENLKIHKRTHT 323

Transcriptional activator that induces expression of multiple genes including pax3, en2, snai2/slug, feb and a subset of wnt genes. Has multiple key roles in the regulation of neural induction and neurogenesis: acts as a neural competence factor, sensitizing the presumptive neuroectoderm to respond to subsequent neuralizing signals. Promotes both preplacodal cell fates and neural crest cell fates, two of the cell populations that arise from the neural plate border. Cooperates with pax3 in concert with wnt signaling to determine neural crest fate. Synergizes with the bmp-inhibitor noggin/nog and acts through the wnt pathway to induce expression of en2. May bind to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'.

Xenopus laevis (taxid: 8355)

>sp|A0JC51|ZIC4_XENLA Zinc finger protein ZIC 4 OS=Xenopus laevis GN=zic4 PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 98/115 (85%), Gaps = 1/115 (0%)

Query: 175 GAFFRYMRQPIKQDMTCLWIDTPG-PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACF 233
           GAFFRYMRQ IKQ++ C WI+    P+K C K F+ MHE+VTH+TVEHVGGPE + H CF
Sbjct: 270 GAFFRYMRQAIKQELICKWIEEDQLPKKLCSKTFSTMHELVTHVTVEHVGGPEQSNHICF 329

Query: 234 WDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           W+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 330 WEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 384

May bind to DNA (By similarity). Induces neural and neural crest differentiation. Does not induce anterior neural tissue.

Xenopus laevis (taxid: 8355)

>sp|Q91689|ZIC2A_XENLA Zinc finger protein ZIC 2-A OS=Xenopus laevis GN=zic2-a PE=2 SV=2

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 4/118 (3%)

Query: 175 GAFFRYMRQP-IKQDMTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTH 230
           GAFFRYMRQP IKQ++ C WID      P+K+C K F+ MHE+VTH++VEHVGGPE + H
Sbjct: 262 GAFFRYMRQPCIKQELICKWIDPEQLNNPKKSCTKTFSTMHELVTHVSVEHVGGPEQSNH 321

Query: 231 ACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 322 ICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 379

Transcriptional repressor that inhibits neurogenesis and induces neural and neural crest differentiation. Regulates anteroposterior patterning in early development by inhibiting expression of the nodal genes through the inhibition of vegt. Required for gastrulation movements and for proper anterior neural and axial development. May also act as a transcriptional activator. May bind to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'.

Xenopus laevis (taxid: 8355)

>sp|Q6DJQ6|ZIC3_XENTR Zinc finger protein ZIC 3 OS=Xenopus tropicalis GN=zic3 PE=2 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 101/117 (86%), Gaps = 3/117 (2%)

Query: 175 GAFFRYMRQPIKQDMTCLWIDTP---GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           GAFFRYMRQPIKQ+++C W++      P+KTC + F++MHE+VTH+T+EHVGGPE T H 
Sbjct: 208 GAFFRYMRQPIKQELSCKWLEESPMNRPQKTCDRTFSSMHELVTHMTMEHVGGPEQTNHI 267

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C+W+ CPR G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 268 CYWEECPRGGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 324

Probably act as transcriptional activator. May binds to the minimal GLI-consensus sequence 5'-GGGTGGTC-3'. Can determine the ectodermal cell fate and promote the earliest step of neural and neural crest development. Involved in establishing left-right asymmetry in the embryo.

Xenopus tropicalis (taxid: 8364)

>sp|O57311|ZIC3_XENLA Zinc finger protein ZIC 3 OS=Xenopus laevis GN=zic3 PE=2 SV=3

 Score =  195 bits (496), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 100/117 (85%), Gaps = 3/117 (2%)

Query: 175 GAFFRYMRQPIKQDMTCLWIDTPG---PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           GAFFRYMRQPIKQ+++C W++      P+KTC + F++MHE+VTH+T+EHVGGPE   H 
Sbjct: 208 GAFFRYMRQPIKQELSCKWLEESTMNHPQKTCDRTFSSMHELVTHMTMEHVGGPEQNNHI 267

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C+W+ CPR G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 268 CYWEECPRGGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 324

Probably act as transcriptional activator. May binds to the minimal GLI-consensus sequence 5'-GGGTGGTC-3'. Can determine the ectodermal cell fate and promote the earliest step of neural and neural crest development. Involved in establishing left-right asymmetry in the embryo.

Xenopus laevis (taxid: 8355)

>sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens GN=ZIC2 PE=1 SV=2

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 4/118 (3%)

Query: 175 GAFFRYMRQP-IKQDMTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTH 230
           GAFFRYMRQ  IKQ++ C WID      P+K+C K F+ MHE+VTH++VEHVGGPE + H
Sbjct: 241 GAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNH 300

Query: 231 ACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 301 VCFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 358

Acts as a transcriptional activator or repressor. Plays important roles in the early stage of organogenesis of the CNS. Activates the transcription of the serotonin transporter SERT in uncrossed ipsilateral retinal ganglion cells (iRGCs) to refine eye-specific projections in primary visual targets. Its transcriptional activity is repressed by MDFIC. Involved in the formation of the ipsilateral retinal projection at the optic chiasm midline. Drives the expression of EPHB1 on ipsilaterally projecting growth cones. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3'. Associates to the basal SERT promoter region from ventrotemporal retinal segments of retinal embryos.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
189242314	401	PREDICTED: similar to zinc finger protei	0.793	0.573	0.550	1e-62
270015215	377	hypothetical protein TcasGA2_TC010234 [T	0.793	0.610	0.550	2e-62
157117837	333	pair-rule protein odd-paired [Aedes aegy	0.851	0.741	0.446	7e-57
242013026	473	zinc finger protein ZIC, putative [Pedic	0.396	0.243	0.871	4e-56
170069405	340	pair-rule protein odd-paired [Culex quin	0.872	0.744	0.440	1e-55
321458947	496	putative transcription factor odd-paired	0.393	0.229	0.844	1e-54
94966314	451	zinc finger protein Pi-Zic [Pandinus imp	0.393	0.252	0.853	4e-54
94966312	331	zinc finger protein Pi-Zic [Pandinus imp	0.393	0.344	0.853	9e-54
260796277	503	zic family member [Branchiostoma florida	0.817	0.471	0.469	6e-53
94966318	460	zinc finger protein Af-Zic [Artemia fran	0.393	0.247	0.827	7e-53

>gi|189242314|ref|XP_968410.2| PREDICTED: similar to zinc finger protein Pi-Zic [Tribolium castaneum]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 167/265 (63%), Gaps = 35/265 (13%)

Query: 33  MINTFMETPT---LASMGIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMP 89
           MIN FM+T     LAS G+KMSP      HQ Q+     MP    ++NHH  +Y    M 
Sbjct: 25  MINAFMDTGHHHHLASYGLKMSPG-----HQAQTPAA-AMP--APDQNHHFQNYGH--MG 74

Query: 90  HMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHR 149
           HM    +RD+LLRR+D+            PP   P   + FHH  D    H   +     
Sbjct: 75  HMGGYAARDFLLRREDF------------PPQTAPSEPVLFHHHGDVPQHHLPHH----H 118

Query: 150 EPVYSNMDL----NAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWID--TPGPRKTC 203
           + +YS  D        Y +   + +  +HGAFFRYMRQPIKQ+M CLW+D   P PRK C
Sbjct: 119 QMLYSRPDAYHQPQHQYLNPMGVPAHHSHGAFFRYMRQPIKQEMQCLWVDPEQPPPRKIC 178

Query: 204 GKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPF 263
            K F +MHEIVTHLTVEHVGGPECTTHACFW  C RNGRPFKAKYKLVNHIRVHTGEKPF
Sbjct: 179 AKHFTSMHEIVTHLTVEHVGGPECTTHACFWQNCSRNGRPFKAKYKLVNHIRVHTGEKPF 238

Query: 264 PCPFPTCGKVFARSENLKIHKRTHT 288
           PCPFP CGKVFARSENLKIHKRTHT
Sbjct: 239 PCPFPGCGKVFARSENLKIHKRTHT 263

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015215|gb|EFA11663.1| hypothetical protein TcasGA2_TC010234 [Tribolium castaneum]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 167/265 (63%), Gaps = 35/265 (13%)

Query: 33  MINTFMETPT---LASMGIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMP 89
           MIN FM+T     LAS G+KMSP      HQ Q+     MP    ++NHH  +Y    M 
Sbjct: 1   MINAFMDTGHHHHLASYGLKMSPG-----HQAQTPAA-AMP--APDQNHHFQNYGH--MG 50

Query: 90  HMQTGYSRDYLLRRDDYANNIHHPPPVPPPPVQPPGNDMFFHHPVDPLSQHSMLYHHHHR 149
           HM    +RD+LLRR+D+            PP   P   + FHH  D    H   +     
Sbjct: 51  HMGGYAARDFLLRREDF------------PPQTAPSEPVLFHHHGDVPQHHLPHH----H 94

Query: 150 EPVYSNMDL----NAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWID--TPGPRKTC 203
           + +YS  D        Y +   + +  +HGAFFRYMRQPIKQ+M CLW+D   P PRK C
Sbjct: 95  QMLYSRPDAYHQPQHQYLNPMGVPAHHSHGAFFRYMRQPIKQEMQCLWVDPEQPPPRKIC 154

Query: 204 GKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPF 263
            K F +MHEIVTHLTVEHVGGPECTTHACFW  C RNGRPFKAKYKLVNHIRVHTGEKPF
Sbjct: 155 AKHFTSMHEIVTHLTVEHVGGPECTTHACFWQNCSRNGRPFKAKYKLVNHIRVHTGEKPF 214

Query: 264 PCPFPTCGKVFARSENLKIHKRTHT 288
           PCPFP CGKVFARSENLKIHKRTHT
Sbjct: 215 PCPFPGCGKVFARSENLKIHKRTHT 239

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117837|ref|XP_001653060.1| pair-rule protein odd-paired [Aedes aegypti] gi|108883324|gb|EAT47549.1| AAEL001344-PA [Aedes aegypti]

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/329 (44%), Positives = 180/329 (54%), Gaps = 82/329 (24%)

Query: 33  MINTFMETPT------LASMGIKMSP-----------------PPPTSPHQLQS---GGN 66
           M+N FM++ +      LA+ GIKMSP                 PP      +QS      
Sbjct: 2   MMNAFMDSSSTAHHSHLATFGIKMSPDHLEQSDVESTSTGSMLPPSAGSSNVQSDMLSSQ 61

Query: 67  HMMPLGGNNENHHNNHYNSYP--MPHMQTGYSRDYL-LRRD-DYANNIHHPPPVPPPPVQ 122
                  N  + +N+H+ S P  M HM   +SRD+L L+RD DY ++       P     
Sbjct: 62  SFYQSSANASSAYNSHHLSPPSHMSHMAPYHSRDFLALKRDNDYFSSSASASADPTS--- 118

Query: 123 PPGNDMFFHHPV--DPLSQH---SMLYHHHHREPVYSNMDLNAA-------YPSTNAMQS 170
                  FHHP   D L+ H   S+  HH H+ P+   +  + A       YP+ +    
Sbjct: 119 ------LFHHPAVHDNLNHHTASSLSNHHFHQHPMRMGLSADYAHPYHQSNYPTVHHQHL 172

Query: 171 A------GTHGAFFRYMRQP--IKQDMTCLWID-----------------------TPGP 199
           A      GT GAFFRYMR P  IKQ+M CLW++                       + G 
Sbjct: 173 ANLPVNPGTSGAFFRYMRHPPSIKQEMQCLWVEPDHPPHHLGLGLTALSAAAVVAASDGS 232

Query: 200 RKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG 259
           RKTC ++F +MH+IV+HLTV+HVGGPECTTHACFW GC RNGRPFKAKYKLVNHIRVHTG
Sbjct: 233 RKTCNRVFQSMHDIVSHLTVDHVGGPECTTHACFWLGCTRNGRPFKAKYKLVNHIRVHTG 292

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           EKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 293 EKPFPCPFPACGKVFARSENLKIHKRTHT 321

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013026|ref|XP_002427222.1| zinc finger protein ZIC, putative [Pediculus humanus corporis] gi|212511526|gb|EEB14484.1| zinc finger protein ZIC, putative [Pediculus humanus corporis]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 106/117 (90%), Gaps = 2/117 (1%)

Query: 174 HGAFFRYMRQPIKQDMTCLWID--TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHA 231
           HGAFFRYMRQP+KQ+MTCLWI+   P P+K CGK F  MHEIVTHLTVEHVGGPECTTHA
Sbjct: 185 HGAFFRYMRQPVKQEMTCLWIEPEQPHPKKICGKNFTTMHEIVTHLTVEHVGGPECTTHA 244

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           CFW  CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 245 CFWQSCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 301

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170069405|ref|XP_001869216.1| pair-rule protein odd-paired [Culex quinquefasciatus] gi|167865284|gb|EDS28667.1| pair-rule protein odd-paired [Culex quinquefasciatus]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/334 (44%), Positives = 183/334 (54%), Gaps = 81/334 (24%)

Query: 33  MINTFMETPT------LASMGIKMSPP--PPTSPHQLQSGGNHMMP--LGGNNENH---- 78
           M+N FM++ +      LA+ GIKMSP     +      + G+ M+P   G +N       
Sbjct: 2   MMNAFMDSSSTAHHTHLATFGIKMSPDHLEQSDVESASTTGSSMLPPSTGSSNTQSDMQS 61

Query: 79  -----------------HNNHYNSYP--MPHMQTGYSRDYL-LRRD-DYANNIHHPPPVP 117
                            +N+H+ S P  M HM   +SRD+L L+RD DY ++        
Sbjct: 62  FYQSSASAAAAANAGSTYNSHHLSPPSHMSHMAPYHSRDFLALKRDNDYFSSSAAVAAAG 121

Query: 118 PPPVQPPGNDMFFHHPV--DPLSQHS---MLYHHHHREPVYSNMDLNAAYPSTNAMQSA- 171
                P      FHHP   D L+ HS   +  HH H+  +   +  + A+P   +  ++ 
Sbjct: 122 AASADPTS---LFHHPAVHDNLNHHSATSLSNHHFHQHQMRMGLPTDYAHPYHQSNYASV 178

Query: 172 ------------GTHGAFFRYMRQP--IKQDMTCLWID---------------------- 195
                       GT GAFFRYMR P  IKQ+M CLW++                      
Sbjct: 179 HHQHLANLPVNPGTSGAFFRYMRHPPSIKQEMQCLWVEPDIPHHHLGLGLTALHAVAAAA 238

Query: 196 -TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHI 254
            + G RKTC K+F++M EIVTHLTV+HVGGPECTTHACFW GC RNGRPFKAKYKLVNHI
Sbjct: 239 VSDGSRKTCNKVFHSMQEIVTHLTVDHVGGPECTTHACFWLGCTRNGRPFKAKYKLVNHI 298

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT
Sbjct: 299 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 332

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458947|gb|EFX70006.1| putative transcription factor odd-paired [Daphnia pulex]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 106/116 (91%), Gaps = 2/116 (1%)

Query: 175 GAFFRYMRQPIKQDMTCLWIDT--PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHAC 232
           GAFFRYMR PIKQ+++C+WID   P P+KTC K+FN+MHEIVTH+TVEHVGGPECT HAC
Sbjct: 214 GAFFRYMRPPIKQELSCMWIDAEQPSPKKTCNKLFNSMHEIVTHITVEHVGGPECTNHAC 273

Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           FW GC RNGRPFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 274 FWQGCCRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 329

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94966314|dbj|BAE94138.1| zinc finger protein Pi-Zic [Pandinus imperator]

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 104/116 (89%), Gaps = 2/116 (1%)

Query: 175 GAFFRYMRQPIKQDMTCLWID--TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHAC 232
           GAFFRYMR PIKQ+MTCLWID   P P+KTC K FN+MHEIVTH+TVEHVGGPECT HAC
Sbjct: 171 GAFFRYMRPPIKQEMTCLWIDQEAPNPKKTCSKTFNSMHEIVTHITVEHVGGPECTNHAC 230

Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +W  C RNGRPFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 231 YWQDCVRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPNCGKVFARSENLKIHKRTHT 286

Source: Pandinus imperator

Species: Pandinus imperator

Genus: Pandinus

Family: Scorpionidae

Order: Scorpiones

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94966312|dbj|BAE94137.1| zinc finger protein Pi-Zic [Pandinus imperator]

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 104/116 (89%), Gaps = 2/116 (1%)

Query: 175 GAFFRYMRQPIKQDMTCLWID--TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHAC 232
           GAFFRYMR PIKQ+MTCLWID   P P+KTC K FN+MHEIVTH+TVEHVGGPECT HAC
Sbjct: 51  GAFFRYMRPPIKQEMTCLWIDQEAPNPKKTCSKTFNSMHEIVTHITVEHVGGPECTNHAC 110

Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +W  C RNGRPFKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 111 YWQDCVRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPNCGKVFARSENLKIHKRTHT 166

Source: Pandinus imperator

Species: Pandinus imperator

Genus: Pandinus

Family: Scorpionidae

Order: Scorpiones

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260796277|ref|XP_002593131.1| zic family member [Branchiostoma floridae] gi|94966289|dbj|BAE94124.1| zinc finger protein AmphiZic [Branchiostoma floridae] gi|229278355|gb|EEN49142.1| zic family member [Branchiostoma floridae]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/283 (46%), Positives = 158/283 (55%), Gaps = 46/283 (16%)

Query: 47  GIKMSPPPPTSPHQLQSGGNHMMPLGGNNENHHNNHYNSYPMPHMQT-GYSRDYLLRRDD 105
            +K+SPP P S     S  N   P  G +  HH+   + YP    Q    SRD+LLRR+ 
Sbjct: 73  ALKLSPPHPMS-EIPSSQANFSSPTNGYSHAHHHGPVSGYPTAAAQAFTASRDFLLRREH 131

Query: 106 YANNIHHPPPVPPPPVQP---PGNDMF------FHHPVDPLSQHSMLYHHHHREPVY--- 153
            A  +    P+P          G+ MF      FH      S H M    H +   +   
Sbjct: 132 LAGTV----PLPGSLTHDHNTAGSGMFVPTSGNFHGHGHADSSHLMFPGFHEQAAAHHPQ 187

Query: 154 -----SNMDL--------NAAYPSTNAMQSAGT-----------HG--AFFRYMRQPIKQ 187
                + + L          + P  + + S              HG  AFFRYMRQPIKQ
Sbjct: 188 NAHHVNGLSLPGDGYGFNQVSSPRRDHLMSNQLNHHMAPMNMPPHGPAAFFRYMRQPIKQ 247

Query: 188 DMTCLWI--DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFK 245
           +++CLWI  D P P+K C K F+ MHEIVTH+TVEHVGGPECT HACFW  CPR+GR FK
Sbjct: 248 ELSCLWIDPDQPEPKKPCNKSFSTMHEIVTHVTVEHVGGPECTNHACFWKDCPRDGRAFK 307

Query: 246 AKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           AKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 308 AKYKLVNHIRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHT 350

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|94966318|dbj|BAE94140.1| zinc finger protein Af-Zic [Artemia franciscana]

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 102/116 (87%), Gaps = 2/116 (1%)

Query: 175 GAFFRYMRQPIKQDMTCLWID--TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHAC 232
           GAF RYMR PIKQ++ CLW+D   P P+KTCGK F +MHEIVTH+TVEHVGGPECT HAC
Sbjct: 179 GAFLRYMRTPIKQELHCLWVDPEQPSPKKTCGKTFGSMHEIVTHITVEHVGGPECTNHAC 238

Query: 233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           FW GC RNGR FKAKYKLVNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct: 239 FWQGCVRNGRAFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 294

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
FB|FBgn0003002	609	opa "odd paired" [Drosophila m	0.496	0.236	0.666	2.5e-59
ZFIN|ZDB-GENE-040622-1	497	zic5 "zic family member 5 (odd	0.493	0.287	0.64	2e-55
UNIPROTKB|Q96T25	663	ZIC5 "Zinc finger protein ZIC	0.313	0.137	0.780	9.1e-55
UNIPROTKB|Q9IB89	515	zic5 "Zinc finger protein ZIC	0.465	0.262	0.638	1.1e-54
UNIPROTKB|J9P7C3	308	ZIC5 "Uncharacterized protein"	0.320	0.301	0.763	9.7e-53
UNIPROTKB|E2R5V7	423	ZIC2 "Uncharacterized protein"	0.520	0.356	0.613	1.4e-52
UNIPROTKB|F1RP23	632	ZIC5 "Uncharacterized protein"	0.489	0.224	0.585	2.5e-52
MGI|MGI:106679	530	Zic2 "zinc finger protein of t	0.520	0.284	0.613	2.9e-52
UNIPROTKB|E2R5V9	669	ZIC5 "Uncharacterized protein"	0.313	0.136	0.780	4e-52
ZFIN|ZDB-GENE-040622-4	530	zic4 "zic family member 4" [Da	0.455	0.249	0.664	7.7e-52

FB|FBgn0003002 opa "odd paired" [Drosophila melanogaster (taxid:7227)]

 Score = 545 (196.9 bits), Expect = 2.5e-59, Sum P(3) = 2.5e-59
 Identities = 108/162 (66%), Positives = 121/162 (74%)

Query:   144 YHHHHREP---VYSNMDLNAAYPSTNAMQSAGTHGAFFRYMR-QP------IKQDMTCLW 193
             Y+HH   P   V+  +  + ++ + +AM  AG  GAF RYMR QP      +KQ+M CLW
Sbjct:   156 YNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGA-GAFLRYMRHQPASSASSVKQEMQCLW 214

Query:   194 IDT-------PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKA 246
             ID        PG RKTC K+F++MHEIVTHLTVEHVGGPECTTHACFW GC RNGRPFKA
Sbjct:   215 IDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKA 274

Query:   247 KYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             KYKLVNHIRVHTGEKPF CP P CGKVFARSENLKIHKRTHT
Sbjct:   275 KYKLVNHIRVHTGEKPFACPHPGCGKVFARSENLKIHKRTHT 316

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0007494 "midgut development" evidence=IEP;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0008354 "germ cell migration" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0007365 "periodic partitioning" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0008101 "decapentaplegic signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-040622-1 zic5 "zic family member 5 (odd-paired homolog, Drosophila)" [Danio rerio (taxid:7955)]

 Score = 517 (187.1 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 96/150 (64%), Positives = 109/150 (72%)

Query:   145 HHHHREPVYSNMDLNAAYPSTN-----AMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGP 199
             H  HR   Y +  L++ Y S N     A    G  GAF RYMRQPIKQ++ C WID    
Sbjct:   201 HFGHRPEHYGSSSLHS-YNSMNLNVNLATAPHGATGAFLRYMRQPIKQELICKWIDQEQT 259

Query:   200 -RKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
              +K C K F+ MHE+V H+TVEHVGGPE +TH CFW+ CPR G+ FKAKYKL+NHIRVHT
Sbjct:   260 AKKPCSKTFSTMHELVNHVTVEHVGGPEQSTHVCFWEECPREGKAFKAKYKLINHIRVHT 319

Query:   259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             GEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   320 GEKPFPCPFPGCGKVFARSENLKIHKRTHT 349

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030901 "midbrain development" evidence=IGI;IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0033278 "cell proliferation in midbrain" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0001841 "neural tube formation" evidence=IGI

UNIPROTKB|Q96T25 ZIC5 "Zinc finger protein ZIC 5" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 9.1e-55, Sum P(4) = 9.1e-55
 Identities = 71/91 (78%), Positives = 78/91 (85%)

Query:   198 GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH 257
             G  K C K F  MHE+V H+TVEHVGGPE ++H CFW+ CPR G+PFKAKYKL+NHIRVH
Sbjct:   426 GGAKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGKPFKAKYKLINHIRVH 485

Query:   258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             TGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   486 TGEKPFPCPFPGCGKVFARSENLKIHKRTHT 516

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9IB89 zic5 "Zinc finger protein ZIC 5" [Xenopus laevis (taxid:8355)]

 Score = 507 (183.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 92/144 (63%), Positives = 107/144 (74%)

Query:   146 HHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTP-GPRKTCG 204
             HH    +  N+++ AA+P+T         GAF RYMRQPIKQ++ C WID     +K C 
Sbjct:   232 HHSYNSMNLNVNIAAAHPATA--------GAFLRYMRQPIKQELICKWIDQDQSSKKPCS 283

Query:   205 KMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFP 264
             K F+ MHE+V H+ VEHVGGPE + H CFW+ C R G+PFKAKYKLVNHIRVHTGEKPFP
Sbjct:   284 KTFSTMHELVNHVAVEHVGGPEQSNHICFWEECAREGKPFKAKYKLVNHIRVHTGEKPFP 343

Query:   265 CPFPTCGKVFARSENLKIHKRTHT 288
             CPFP CGKVFARSENLKIHKRTHT
Sbjct:   344 CPFPGCGKVFARSENLKIHKRTHT 367

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0014029 "neural crest formation" evidence=IMP

UNIPROTKB|J9P7C3 ZIC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 9.7e-53, Sum P(3) = 9.7e-53
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query:   198 GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH 257
             G  K C K F  MHE+V H+TVEHVGGPE + H CFW+ CPR G+PFKAKYKL+NHIRVH
Sbjct:   215 GGAKPCSKTFGTMHELVNHVTVEHVGGPEQSNHVCFWEDCPREGKPFKAKYKLINHIRVH 274

Query:   258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
             TGEKPFPCPFP CGKVFARSENLKIHKRTHT +
Sbjct:   275 TGEKPFPCPFPGCGKVFARSENLKIHKRTHTVI 307

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R5V7 ZIC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 521 (188.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 97/158 (61%), Positives = 114/158 (72%)

Query:   135 DPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQP-IKQDMTCLW 193
             DP S   +   H+   P+  NM +N A  + +        GAFFRYMRQ  IKQ++ C W
Sbjct:   190 DPYSAAQL---HNQYGPMNMNMGMNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKW 246

Query:   194 IDTP---GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKL 250
             ID      P+K+C K F+ MHE+VTH++VEHVGGPE + H CFW+ CPR G+PFKAKYKL
Sbjct:   247 IDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKYKL 306

Query:   251 VNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             VNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   307 VNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 344

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RP23 ZIC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 483 (175.1 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
 Identities = 92/157 (58%), Positives = 103/157 (65%)

Query:   147 HHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDT---------- 196
             HH  P        A +P  +     G  GAF RYMRQPIKQ++ C WID           
Sbjct:   329 HHAPPPAPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPDELAGPPPPP 388

Query:   197 PGPRKTCG-----KMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLV 251
             P P    G       F  MHE+V H+TVEHVGGPE ++H CFW+ CPR G+PFKAKYKL+
Sbjct:   389 PPPPPPAGGAKPCSTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGKPFKAKYKLI 448

Query:   252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             NHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   449 NHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 485

GO:0030900 "forebrain development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:106679 Zic2 "zinc finger protein of the cerebellum 2" [Mus musculus (taxid:10090)]

 Score = 521 (188.5 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
 Identities = 97/158 (61%), Positives = 114/158 (72%)

Query:   135 DPLSQHSMLYHHHHREPVYSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQP-IKQDMTCLW 193
             DP S   +   H+   P+  NM +N A  + +        GAFFRYMRQ  IKQ++ C W
Sbjct:   204 DPYSAAQL---HNQYGPMNMNMGMNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKW 260

Query:   194 IDTP---GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKL 250
             ID      P+K+C K F+ MHE+VTH++VEHVGGPE + H CFW+ CPR G+PFKAKYKL
Sbjct:   261 IDPEQLSNPKKSCNKTFSTMHELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKYKL 320

Query:   251 VNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             VNHIRVHTGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   321 VNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHT 358

GO:0001843 "neural tube closure" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0007417 "central nervous system development" evidence=IGI

GO:0007601 "visual perception" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048066 "developmental pigmentation" evidence=IMP

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

UNIPROTKB|E2R5V9 ZIC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 423 (154.0 bits), Expect = 4.0e-52, Sum P(3) = 4.0e-52
 Identities = 71/91 (78%), Positives = 77/91 (84%)

Query:   198 GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH 257
             G  K C K F  MHE+V H+TVEHVGGPE + H CFW+ CPR G+PFKAKYKL+NHIRVH
Sbjct:   432 GGAKPCSKTFGTMHELVNHVTVEHVGGPEQSNHVCFWEDCPREGKPFKAKYKLINHIRVH 491

Query:   258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             TGEKPFPCPFP CGKVFARSENLKIHKRTHT
Sbjct:   492 TGEKPFPCPFPGCGKVFARSENLKIHKRTHT 522

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040622-4 zic4 "zic family member 4" [Danio rerio (taxid:7955)]

 Score = 509 (184.2 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:   153 YSNMDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTP-GPRKTCGKMFNNMH 211
             Y  ++LN    + +A    G  GAFFRYMRQPIKQ++ C W++     +K C K ++ MH
Sbjct:   252 YGGLNLNM---NLSAHHHHGA-GAFFRYMRQPIKQELICKWLEPEHSAKKLCSKTYSTMH 307

Query:   212 EIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG 271
             E+VTH+TVEHVGGPE   H CFW+ CPR G+PFKAKYKLVNHIRVHTGEKPFPCPFP CG
Sbjct:   308 ELVTHVTVEHVGGPEQANHICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCG 367

Query:   272 KVFARSENLKIHKRTHT 288
             KVFARSENLKIHKRTHT
Sbjct:   368 KVFARSENLKIHKRTHT 384

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0021534 "cell proliferation in hindbrain" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39768	OPA_DROME	No assigned EC number	0.7410	0.4275	0.2036	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	3e-04

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFAR 276
           L  H+R HTGEKP+ CP   CGK F+ 
Sbjct: 2   LRRHMRTHTGEKPYKCPV--CGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG2462|consensus	279		99.85
KOG2462|consensus	279		99.76
KOG3623|consensus	1007		99.49
KOG1074|consensus	958		99.43
KOG3576|consensus	267		99.41
KOG3608|consensus	467		99.32
KOG3623|consensus	1007		99.31
KOG1074|consensus	958		99.3
KOG3576|consensus	267		99.2
KOG3608|consensus	467		98.92
PHA00733	128	hypothetical protein	98.62
PLN03086	567	PRLI-interacting factor K; Provisional	98.6
PHA02768	55	hypothetical protein; Provisional	98.5
PHA00733	128	hypothetical protein	98.35
PLN03086	567	PRLI-interacting factor K; Provisional	98.17
PHA02768	55	hypothetical protein; Provisional	98.16
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.15
KOG3993|consensus	500		97.88
KOG3993|consensus	500		97.71
PHA00732	79	hypothetical protein	97.69
PHA00616	44	hypothetical protein	97.53
PHA00732	79	hypothetical protein	97.39
PHA00616	44	hypothetical protein	97.22
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.11
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.08
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.08
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.88
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.67
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.6
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.26
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.09
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.01
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.96
smart00355	26	ZnF_C2H2 zinc finger.	95.57
COG5189	423	SFP1 Putative transcriptional repressor regulating	95.31
smart00355	26	ZnF_C2H2 zinc finger.	94.71
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.1
COG5048	467	FOG: Zn-finger [General function prediction only]	94.08
PRK04860	160	hypothetical protein; Provisional	94.07
KOG2231|consensus	669		93.19
COG5189	423	SFP1 Putative transcriptional repressor regulating	93.13
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.59
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	92.58
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.55
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.09
KOG1146|consensus	1406		91.84
COG5048	467	FOG: Zn-finger [General function prediction only]	91.3
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.26
KOG2893|consensus	341		90.42
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	89.7
KOG2893|consensus	341		89.09
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.48
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	86.27
PRK04860	160	hypothetical protein; Provisional	86.14
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	84.77
KOG2231|consensus	669		81.74
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	80.01

>KOG2462|consensus

Probab=99.85  E-value=7.6e-22  Score=179.21  Aligned_cols=113  Identities=32%  Similarity=0.565  Sum_probs=101.8

Q ss_pred             CCCCcccccccCccccccCchhhHHHHhcCCC--CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCC
Q psy16225        164 STNAMQSAGTHGAFFRYMRQPIKQDMTCLWID--TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNG  241 (290)
Q Consensus       164 s~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e--~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cg  241 (290)
                      .....|.|..||+.+.....|.+|...+...+  +.+.|+.|+|.|.++..|+.|+++ |.-  +        .+|.+||
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirT-H~l--~--------c~C~iCG  194 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRT-HTL--P--------CECGICG  194 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhc-cCC--C--------ccccccc
Confidence            35568999999999999999999998866554  779999999999999999999999 541  2        5899999


Q ss_pred             CCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        242 RPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       242 ksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|...+-|+.|+|+|+|||||.|  +.|+|+|+..+||+.|++||++
T Consensus       195 KaFSRPWLLQGHiRTHTGEKPF~C--~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  195 KAFSRPWLLQGHIRTHTGEKPFSC--PHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             ccccchHHhhcccccccCCCCccC--CcccchhcchHHHHHHHHhhcC
Confidence            999999999999999999999999  7899999999999999999986

>KOG2462|consensus

Probab=99.76  E-value=2.3e-19  Score=163.13  Aligned_cols=106  Identities=27%  Similarity=0.444  Sum_probs=99.6

Q ss_pred             CCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCC
Q psy16225        166 NAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFK  245 (290)
Q Consensus       166 ~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~  245 (290)
                      ...+.|..|||.|.++-.|..|.++ |.  .+++|.+|||.|.+.-.|+.|+|+ |+|+++        |.|..|+|.|.
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirT-H~--l~c~C~iCGKaFSRPWLLQGHiRT-HTGEKP--------F~C~hC~kAFA  226 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRT-HT--LPCECGICGKAFSRPWLLQGHIRT-HTGEKP--------FSCPHCGKAFA  226 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhc-cC--CCcccccccccccchHHhhccccc-ccCCCC--------ccCCcccchhc
Confidence            4578899999999999999999988 43  689999999999999999999999 888888        89999999999


Q ss_pred             cchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        246 AKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       246 sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      .+++|+.||++|.+.|+|+|  ..|+|+|+..+.|.+|..
T Consensus       227 DRSNLRAHmQTHS~~K~~qC--~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  227 DRSNLRAHMQTHSDVKKHQC--PRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             chHHHHHHHHhhcCCccccC--cchhhHHHHHHHHHHhhh
Confidence            99999999999999999999  899999999999999975

>KOG3623|consensus

Probab=99.49  E-value=1.1e-14  Score=146.01  Aligned_cols=118  Identities=22%  Similarity=0.362  Sum_probs=98.0

Q ss_pred             CCcccccccCccccccCchhhHHHHhcC-CCCCCcCCccCcccCChHHHHHhhhhcccCCCcccc----cCccccCCCCC
Q psy16225        166 NAMQSAGTHGAFFRYMRQPIKQDMTCLW-IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTT----HACFWDGCPRN  240 (290)
Q Consensus       166 ~~~~~C~~Cg~~F~~~~~l~~H~~~~h~-~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~----~~C~~~~C~~C  240 (290)
                      .....|..|.+.+....+|+.|.+.-|. .+..|.|..|..+|.....|.+|+.+|..+......    ..-..|+|.+|
T Consensus       208 sqlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtEC  287 (1007)
T KOG3623|consen  208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTEC  287 (1007)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccccc
Confidence            3456799999999999999999875454 457899999999999999999999985433321111    11145899999


Q ss_pred             CCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       241 gksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      +|.|+.|..|+.|+|+|.|||||.|  +.|+|+|+.+..+..|+-
T Consensus       288 gKAFKfKHHLKEHlRIHSGEKPfeC--pnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  288 GKAFKFKHHLKEHLRIHSGEKPFEC--PNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             chhhhhHHHHHhhheeecCCCCcCC--cccccccccCCccccccc
Confidence            9999999999999999999999999  899999999999888863

>KOG1074|consensus

Probab=99.43  E-value=7.7e-14  Score=141.87  Aligned_cols=52  Identities=38%  Similarity=0.695  Sum_probs=49.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      .+|-+|-+...-++.|+.|.|+|+|||||+|  ++||+.|.++.+|+.|+-+|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkC--KiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKC--KICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCcccc--ccccchhccccchhhcccccc
Confidence            3799999999999999999999999999999  899999999999999998885

>KOG3576|consensus

Probab=99.41  E-value=1.5e-13  Score=120.52  Aligned_cols=121  Identities=22%  Similarity=0.332  Sum_probs=103.2

Q ss_pred             ccccCCCCCCCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCcccc
Q psy16225        156 MDLNAAYPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWD  235 (290)
Q Consensus       156 ~~l~~~~ps~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~  235 (290)
                      +...+...+.+..+.|..|+|.|...+-|.+|+ .||..-+.+.|..|||.|.+.-+|++|+++ |++..+        |
T Consensus       105 ~k~t~gsssd~d~ftCrvCgK~F~lQRmlnrh~-kch~~vkr~lct~cgkgfndtfdlkrh~rt-htgvrp--------y  174 (267)
T KOG3576|consen  105 PKSTIGSSSDQDSFTCRVCGKKFGLQRMLNRHL-KCHSDVKRHLCTFCGKGFNDTFDLKRHTRT-HTGVRP--------Y  174 (267)
T ss_pred             CcccccCCCCCCeeeeehhhhhhhHHHHHHHHh-hhccHHHHHHHhhccCcccchhhhhhhhcc-ccCccc--------c
Confidence            334444555677899999999999999888875 568877999999999999999999999999 788777        8


Q ss_pred             CCCCCCCCCCcchhhhchhh-hcC----------CCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        236 GCPRNGRPFKAKYKLVNHIR-VHT----------GEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       236 ~C~~CgksF~sks~L~~H~r-vHt----------geKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      +|..|+|.|.....|..|.+ +|.          .+|-|.|  .+||.+-...+.+..|++.|.
T Consensus       175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vc--edcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVC--EDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeee--cccCCCCCChhHHHHHHHhcC
Confidence            99999999999999999987 553          3567999  899999999999999988764

>KOG3608|consensus

Probab=99.32  E-value=3.4e-13  Score=126.36  Aligned_cols=115  Identities=23%  Similarity=0.335  Sum_probs=99.0

Q ss_pred             CCCCCCcccccccCccccccCchhhHHHHhcC-CCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCC
Q psy16225        162 YPSTNAMQSAGTHGAFFRYMRQPIKQDMTCLW-IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRN  240 (290)
Q Consensus       162 ~ps~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~-~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~C  240 (290)
                      ..+...+..|..||..|+.+..|..|.++.-. ...+|.|..|.|.|.++..|+.|++. |..-          |+|+.|
T Consensus       201 ~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r-Hvn~----------ykCplC  269 (467)
T KOG3608|consen  201 THSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR-HVNC----------YKCPLC  269 (467)
T ss_pred             hcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH-hhhc----------cccccc
Confidence            34566678899999999999999999775322 23789999999999999999999988 5432          799999


Q ss_pred             CCCCCcchhhhchhh-hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        241 GRPFKAKYKLVNHIR-VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       241 gksF~sks~L~~H~r-vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      .-.....+.|.+|+| .|..+|||+|  +.|.+.|.+.++|.+|..+|+.
T Consensus       270 dmtc~~~ssL~~H~r~rHs~dkpfKC--d~Cd~~c~~esdL~kH~~~HS~  317 (467)
T KOG3608|consen  270 DMTCSSASSLTTHIRYRHSKDKPFKC--DECDTRCVRESDLAKHVQVHSK  317 (467)
T ss_pred             ccCCCChHHHHHHHHhhhccCCCccc--cchhhhhccHHHHHHHHHhccc
Confidence            999999999999999 7889999999  8999999999999999999873

>KOG3623|consensus

Probab=99.31  E-value=3.6e-13  Score=135.24  Aligned_cols=81  Identities=32%  Similarity=0.513  Sum_probs=75.8

Q ss_pred             CCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCc
Q psy16225        194 IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKV  273 (290)
Q Consensus       194 ~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKs  273 (290)
                      .+..|.|++|+|.|...+.|.+|.-. |.|.++        |+|.+|.|.|+.|..|..|+|.|.|||||+|  +.|+|+
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYE-HsGqRP--------yqC~iCkKAFKHKHHLtEHkRLHSGEKPfQC--dKClKR  959 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYE-HSGQRP--------YQCIICKKAFKHKHHLTEHKRLHSGEKPFQC--DKCLKR  959 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhh-hcCCCC--------cccchhhHhhhhhhhhhhhhhhccCCCcchh--hhhhhh
Confidence            34789999999999999999999875 888877        8999999999999999999999999999999  999999


Q ss_pred             cCChHHHHHHhh
Q psy16225        274 FARSENLKIHKR  285 (290)
Q Consensus       274 Fs~~s~L~~H~r  285 (290)
                      |+.+..+.+||.
T Consensus       960 FSHSGSYSQHMN  971 (1007)
T KOG3623|consen  960 FSHSGSYSQHMN  971 (1007)
T ss_pred             cccccchHhhhc
Confidence            999999999984

>KOG1074|consensus

Probab=99.30  E-value=1.1e-12  Score=133.64  Aligned_cols=52  Identities=40%  Similarity=0.688  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       236 ~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      .|..|++.|...+.|..|+|+|+++|||.|  ..|++.|....+|+.|+.+|..
T Consensus       881 ~C~vCgk~FsSSsALqiH~rTHtg~KPF~C--~fC~~aFttrgnLKvHMgtH~w  932 (958)
T KOG1074|consen  881 VCNVCGKQFSSSAALEIHMRTHTGPKPFFC--HFCEEAFTTRGNLKVHMGTHMW  932 (958)
T ss_pred             hhccchhcccchHHHHHhhhcCCCCCCccc--hhhhhhhhhhhhhhhhhccccc
Confidence            699999999999999999999999999999  6699999999999999999864

>KOG3576|consensus

Probab=99.20  E-value=2.3e-12  Score=113.16  Aligned_cols=82  Identities=28%  Similarity=0.547  Sum_probs=74.3

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCcc
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVF  274 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsF  274 (290)
                      ...|.|.+|+|.|.-..-|.+|++- |...+.        +-|..|||.|.....|++|+|+|+|.+||+|  ..|+|.|
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kc-h~~vkr--------~lct~cgkgfndtfdlkrh~rthtgvrpykc--~~c~kaf  183 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKC-HSDVKR--------HLCTFCGKGFNDTFDLKRHTRTHTGVRPYKC--SLCEKAF  183 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhh-ccHHHH--------HHHhhccCcccchhhhhhhhccccCccccch--hhhhHHH
Confidence            3678999999999999999999998 655544        7899999999999999999999999999999  8899999


Q ss_pred             CChHHHHHHhhhc
Q psy16225        275 ARSENLKIHKRTH  287 (290)
Q Consensus       275 s~~s~L~~H~rtH  287 (290)
                      .+.-.|..|++.-
T Consensus       184 tqrcsleshl~kv  196 (267)
T KOG3576|consen  184 TQRCSLESHLKKV  196 (267)
T ss_pred             HhhccHHHHHHHH
Confidence            9999999998643

>KOG3608|consensus

Probab=98.92  E-value=8.1e-10  Score=103.97  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             ccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCCCCCc
Q psy16225        169 QSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGRPFKA  246 (290)
Q Consensus       169 ~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--CgksF~s  246 (290)
                      |.|+.|+.+....+.|.+|++..|..+++|+|+.|++.|.+.++|.+|..+ |.. ..        |.|..  |..+|+.
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~-HS~-~~--------y~C~h~~C~~s~r~  333 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQV-HSK-TV--------YQCEHPDCHYSVRT  333 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHh-ccc-cc--------eecCCCCCcHHHHH
Confidence            334444444444444444444444445555555555555555555555554 331 11        34444  5555555


Q ss_pred             chhhhchhh-hcCC--CCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        247 KYKLVNHIR-VHTG--EKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       247 ks~L~~H~r-vHtg--eKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      ...+.+|++ +|.|  +.+|.|  -.|++.|.+-.+|..|++
T Consensus       334 ~~q~~~H~~evhEg~np~~Y~C--H~Cdr~ft~G~~L~~HL~  373 (467)
T KOG3608|consen  334 YTQMRRHFLEVHEGNNPILYAC--HCCDRFFTSGKSLSAHLM  373 (467)
T ss_pred             HHHHHHHHHHhccCCCCCceee--ecchhhhccchhHHHHHH
Confidence            555555555 3333  234566  446666666666666653

>PHA00733 hypothetical protein

Probab=98.62  E-value=3e-08  Score=82.32  Aligned_cols=81  Identities=23%  Similarity=0.298  Sum_probs=60.3

Q ss_pred             CCCcCCccCcccCChHHHHHh--hhh--cccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCC
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTH--LTV--EHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG  271 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H--~~~--~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~Cg  271 (290)
                      +++.|.+|.+.|.....|..+  ++.  .+.+..+        +.|+.|++.|.....|..|+++|  +++|.|  ..|+
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP--------y~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C--~~Cg  106 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP--------YVCPLCLMPFSSSVSLKQHIRYT--EHSKVC--PVCG  106 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC--------ccCCCCCCcCCCHHHHHHHHhcC--CcCccC--CCCC
Confidence            667888888888776666555  211  1112222        78999999999999999998876  457899  7899


Q ss_pred             CccCChHHHHHHhhhcC
Q psy16225        272 KVFARSENLKIHKRTHT  288 (290)
Q Consensus       272 KsFs~~s~L~~H~rtHT  288 (290)
                      +.|.....|.+|++...
T Consensus       107 K~F~~~~sL~~H~~~~h  123 (128)
T PHA00733        107 KEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CccCCHHHHHHHHHHhc
Confidence            99999999999987654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.60  E-value=6.1e-08  Score=97.62  Aligned_cols=99  Identities=19%  Similarity=0.306  Sum_probs=73.4

Q ss_pred             cccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCc-
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKA-  246 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~s-  246 (290)
                      -+.|..|++.|. ...+.+|..+||   .++.|. |++.+ .+..|..|+++ |...++        +.|..|++.|.. 
T Consensus       453 H~~C~~Cgk~f~-~s~LekH~~~~H---kpv~Cp-Cg~~~-~R~~L~~H~~t-hCp~Kp--------i~C~fC~~~v~~g  517 (567)
T PLN03086        453 HVHCEKCGQAFQ-QGEMEKHMKVFH---EPLQCP-CGVVL-EKEQMVQHQAS-TCPLRL--------ITCRFCGDMVQAG  517 (567)
T ss_pred             CccCCCCCCccc-hHHHHHHHHhcC---CCccCC-CCCCc-chhHHHhhhhc-cCCCCc--------eeCCCCCCccccC
Confidence            457888888885 566888888875   678888 88755 56788888877 444444        688888888842 


Q ss_pred             ---------chhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        247 ---------KYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       247 ---------ks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                               .+.|..|..+. |.+++.|  ..||+.+... .+..|+.
T Consensus       518 ~~~~d~~d~~s~Lt~HE~~C-G~rt~~C--~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        518 GSAMDVRDRLRGMSEHESIC-GSRTAPC--DSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             ccccchhhhhhhHHHHHHhc-CCcceEc--cccCCeeeeh-hHHHHHH
Confidence                     34688888875 7888999  7898888755 4677754

>PHA02768 hypothetical protein; Provisional

Probab=98.50  E-value=3.6e-08  Score=69.80  Aligned_cols=42  Identities=19%  Similarity=0.494  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHH
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENL  280 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L  280 (290)
                      |+|++||+.|.....|..|+|+|+  ++|+|  ..|+|.|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc--~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKL--SNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccC--Ccccceeccccee
Confidence            456666666666666666666666  45666  5666666655544

>PHA00733 hypothetical protein

Probab=98.35  E-value=3.3e-07  Score=76.05  Aligned_cols=81  Identities=11%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             CCcccccccCccccccCchhhHH----HHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCC
Q psy16225        166 NAMQSAGTHGAFFRYMRQPIKQD----MTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNG  241 (290)
Q Consensus       166 ~~~~~C~~Cg~~F~~~~~l~~H~----~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cg  241 (290)
                      ...+.|..|.+.|.....|..+.    ...+..+++|.|+.|++.|.+...|..|++. +.  .+        +.|..|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~-h~--~~--------~~C~~Cg  106 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY-TE--HS--------KVCPVCG  106 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc-CC--cC--------ccCCCCC
Confidence            44778999999998877665551    1222346899999999999999999999987 31  22        6999999


Q ss_pred             CCCCcchhhhchhhhc
Q psy16225        242 RPFKAKYKLVNHIRVH  257 (290)
Q Consensus       242 ksF~sks~L~~H~rvH  257 (290)
                      +.|.....|.+|++..
T Consensus       107 K~F~~~~sL~~H~~~~  122 (128)
T PHA00733        107 KEFRNTDSTLDHVCKK  122 (128)
T ss_pred             CccCCHHHHHHHHHHh
Confidence            9999999999998744

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.17  E-value=3.5e-06  Score=85.10  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=77.4

Q ss_pred             ccccccCccccccCchhhHHHHhcCC------------------CCCCcCCccCcccCChHHHHHhhhhcccCCCccccc
Q psy16225        169 QSAGTHGAFFRYMRQPIKQDMTCLWI------------------DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTH  230 (290)
Q Consensus       169 ~~C~~Cg~~F~~~~~l~~H~~~~h~~------------------e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~  230 (290)
                      ..|..|..... .+.+..|+..|...                  ++.+.|+.|++.|. ...|..|++++|   .+    
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H---kp----  478 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH---EP----  478 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC---CC----
Confidence            35888876653 34467777665321                  24568999999996 688999999865   22    


Q ss_pred             CccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccC----------ChHHHHHHhhhc
Q psy16225        231 ACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFA----------RSENLKIHKRTH  287 (290)
Q Consensus       231 ~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs----------~~s~L~~H~rtH  287 (290)
                          +.|+ |++.+ .+..|..|+++|..+|++.|  ..|++.|.          ..+.|..|..++
T Consensus       479 ----v~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C--~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        479 ----LQCP-CGVVL-EKEQMVQHQASTCPLRLITC--RFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             ----ccCC-CCCCc-chhHHHhhhhccCCCCceeC--CCCCCccccCccccchhhhhhhHHHHHHhc
Confidence                6888 99765 66899999999999999999  55999995          245799998765

>PHA02768 hypothetical protein; Provisional

Probab=98.16  E-value=1.3e-06  Score=61.95  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=33.4

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLV  251 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~  251 (290)
                      -|+|+.|++.|.+...|.+|+++ |.  ++        ++|..|++.|..++.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~--k~--------~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN--TN--------LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC--Cc--------ccCCcccceecccceeE
Confidence            47788888888888888888888 43  22        57888888888777665

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.15  E-value=6.4e-07  Score=53.99  Aligned_cols=26  Identities=58%  Similarity=1.232  Sum_probs=23.4

Q ss_pred             hhhchhhhcCCCCcccCCCCCCCCccCC
Q psy16225        249 KLVNHIRVHTGEKPFPCPFPTCGKVFAR  276 (290)
Q Consensus       249 ~L~~H~rvHtgeKpf~C~~~~CgKsFs~  276 (290)
                      +|.+|+++|+++|||+|  +.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C--~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKC--PYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEE--SSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCC--CCCcCeeCc
Confidence            47899999999999999  889999974

...

>KOG3993|consensus

Probab=97.88  E-value=2.6e-06  Score=82.21  Aligned_cols=113  Identities=21%  Similarity=0.314  Sum_probs=64.0

Q ss_pred             CCcccccccCccccccCchhhHHHHhcCCC-CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        166 NAMQSAGTHGAFFRYMRQPIKQDMTCLWID-TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       166 ~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e-~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      -..|+|..|-..|.+.-.|.+|+  |-.+- ..|+|.+|+|.|+...+|..|.|+ |.-.+.....     .-+--.+.-
T Consensus       265 iGdyiCqLCK~kYeD~F~LAQHr--C~RIV~vEYrCPEC~KVFsCPANLASHRRW-HKPR~eaa~a-----~~~P~k~~~  336 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALAQHR--CPRIVHVEYRCPECDKVFSCPANLASHRRW-HKPRPEAAKA-----GSPPPKQAV  336 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHhhcc--CCeeEEeeecCCcccccccCchhhhhhhcc-cCCchhhhhc-----CCCChhhhh
Confidence            34577888877777777777774  22222 467888888888888888888887 4322211000     000000000


Q ss_pred             Ccchhhhchhhh--cCCCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        245 KAKYKLVNHIRV--HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       245 ~sks~L~~H~rv--HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      ......+.-.|.  ...+--|.|  ..|+|.|.+...|++|+-+|.
T Consensus       337 ~~rae~~ea~rsg~dss~gi~~C--~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  337 ETRAEVQEAERSGDDSSSGIFSC--HTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhhhhhhhccccCCcccCceeec--HHhhhhhHHHHHHHHhHHhhh
Confidence            000111111110  011235999  789999999999999988774

>KOG3993|consensus

Probab=97.71  E-value=4.2e-06  Score=80.77  Aligned_cols=85  Identities=11%  Similarity=0.027  Sum_probs=45.6

Q ss_pred             CcccccccCccccccCchhhHHHHhcCCCCCCc--CCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        167 AMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGP--RKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       167 ~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~--C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      ..|.|.+|+|.|....+|..|++-+......-.  -+.=.+. .....+.+-...   ++...+.   ..|.|..|+|.|
T Consensus       294 vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~-~~~rae~~ea~r---sg~dss~---gi~~C~~C~KkF  366 (500)
T KOG3993|consen  294 VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQA-VETRAEVQEAER---SGDDSSS---GIFSCHTCGKKF  366 (500)
T ss_pred             eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhh-hhhhhhhhhccc---cCCcccC---ceeecHHhhhhh
Confidence            478999999999999999999764322100000  0000000 111111111111   1111111   237888888888


Q ss_pred             CcchhhhchhhhcC
Q psy16225        245 KAKYKLVNHIRVHT  258 (290)
Q Consensus       245 ~sks~L~~H~rvHt  258 (290)
                      .....|+.|+.+|.
T Consensus       367 rRqAYLrKHqlthq  380 (500)
T KOG3993|consen  367 RRQAYLRKHQLTHQ  380 (500)
T ss_pred             HHHHHHHHhHHhhh
Confidence            88888888866553

>PHA00732 hypothetical protein

Probab=97.69  E-value=3.9e-05  Score=58.53  Aligned_cols=48  Identities=17%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcC
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHt  258 (290)
                      +|.|+.|++.|.+...|+.|++.+|.+           +.|+.|++.|.   .+..|++...
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~-----------~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL-----------TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC-----------CccCCCCCEeC---ChhhhhcccC
Confidence            356777777777777777777643321           35677777775   4556665443

>PHA00616 hypothetical protein

Probab=97.53  E-value=2.2e-05  Score=53.18  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=25.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCP  266 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~  266 (290)
                      ++|..||+.|..++.|..|++.|++++++.|.
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            67888888888888888888888888887773

>PHA00732 hypothetical protein

Probab=97.39  E-value=0.00012  Score=55.87  Aligned_cols=45  Identities=31%  Similarity=0.510  Sum_probs=38.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhh-cCCCCcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRV-HTGEKPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rv-HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      +.|.+|++.|.....|..|++. |.+   +.|  +.|++.|.   .|..|.+++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C--~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL---TKC--PVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC---Ccc--CCCCCEeC---Chhhhhccc
Confidence            6899999999999999999984 664   589  89999998   578887654

>PHA00616 hypothetical protein

Probab=97.22  E-value=0.00014  Score=49.25  Aligned_cols=27  Identities=19%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ||+|  +.||+.|.+.++|.+|++.|+||
T Consensus         1 pYqC--~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQC--LRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCcc--chhhHHHhhHHHHHHHHHHhcCC
Confidence            6899  88999999999999999999986

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.11  E-value=0.00064  Score=47.80  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=11.7

Q ss_pred             CcCCccCcccCChHHHHHhhhhcccC
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTVEHVG  223 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~~H~g  223 (290)
                      |.|+.|++ ..+...|..|+...|..
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~   27 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRS   27 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcC
Confidence            44555555 23344455555444443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.08  E-value=0.00021  Score=42.94  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=14.9

Q ss_pred             hhhHHHHhcCCCCCCcCCccCcccC
Q psy16225        184 PIKQDMTCLWIDTPGPRKTCGKMFN  208 (290)
Q Consensus       184 l~~H~~~~h~~e~~~~C~~CgKsF~  208 (290)
                      |.+|+++ |.++++|.|++|++.|.
T Consensus         2 l~~H~~~-H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRT-HTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHH-HSSSSSEEESSSSEEES
T ss_pred             HHHHhhh-cCCCCCCCCCCCcCeeC
Confidence            4556554 66666666666666664

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.08  E-value=0.00049  Score=48.39  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=41.9

Q ss_pred             cccccccCccccccCchhhHHHHhcCCC-CCCcCCccCcccCChHHHHHhhhhcc
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMTCLWID-TPGPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~~h~~e-~~~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      .|.|+.|++.| +...|..|....|..+ +.+.|++|.+.+.  .+|.+|+...|
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            47899999954 5677999999888876 6799999998755  48999998765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.98  E-value=0.0004  Score=39.96  Aligned_cols=23  Identities=52%  Similarity=1.089  Sum_probs=18.2

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |+|  +.|++.|.+...|.+|++.|
T Consensus         1 y~C--~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKC--PICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHHHH
T ss_pred             CCC--CCCCCccCCHHHHHHHHhHC
Confidence            567  67888888888888888765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.88  E-value=0.00061  Score=52.32  Aligned_cols=73  Identities=23%  Similarity=0.483  Sum_probs=16.9

Q ss_pred             cCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChH
Q psy16225        199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSE  278 (290)
Q Consensus       199 ~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s  278 (290)
                      +|..|+..|.+...|..|+...|.-...             ....+.....+..+++.-. ...+.|  ..|++.|....
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-------------~~~~l~~~~~~~~~~~~~~-~~~~~C--~~C~~~f~s~~   64 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-------------DQKYLVDPNRLLNYLRKKV-KESFRC--PYCNKTFRSRE   64 (100)
T ss_dssp             --------------------------------------------------------------SSEEB--SSSS-EESSHH
T ss_pred             Cccccccccccccccccccccccccccc-------------ccccccccccccccccccc-CCCCCC--CccCCCCcCHH
Confidence            4777888888878888887665543221             0111112223333333211 125777  66777777777


Q ss_pred             HHHHHhhhc
Q psy16225        279 NLKIHKRTH  287 (290)
Q Consensus       279 ~L~~H~rtH  287 (290)
                      .|..|++.+
T Consensus        65 ~l~~Hm~~~   73 (100)
T PF12756_consen   65 ALQEHMRSK   73 (100)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHcCc
Confidence            777777653

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.67  E-value=0.00074  Score=38.80  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=14.8

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.|+.|++.|.+...|++|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566777777777777777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.60  E-value=0.0012  Score=37.65  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=15.0

Q ss_pred             CcCCccCcccCChHHHHHhhhhcc
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      |.|++|++.|.+...|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            457777777777777777776643

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.26  E-value=0.0021  Score=38.40  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             CCcCCccCcccCChHHHHHhhhhc
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVE  220 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~  220 (290)
                      +|+|+.|++.|.+...|..|++.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            467777777777777777777663

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.09  E-value=0.0019  Score=49.48  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=19.3

Q ss_pred             cccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchh
Q psy16225        170 SAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYK  249 (290)
Q Consensus       170 ~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~  249 (290)
                      .|..|+..|.+...++.|+...|....+     ..+.+.....+..+++. ....         .+.|..|++.|.+...
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~-~~~~---------~~~C~~C~~~f~s~~~   65 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRK-KVKE---------SFRCPYCNKTFRSREA   65 (100)
T ss_dssp             ------------------------------------------------------S---------SEEBSSSS-EESSHHH
T ss_pred             Cccccccccccccccccccccccccccc-----ccccccccccccccccc-ccCC---------CCCCCccCCCCcCHHH
Confidence            3899999999999999999876754322     11122233334333332 1111         1689999999999999


Q ss_pred             hhchhhhc
Q psy16225        250 LVNHIRVH  257 (290)
Q Consensus       250 L~~H~rvH  257 (290)
                      |..|++.+
T Consensus        66 l~~Hm~~~   73 (100)
T PF12756_consen   66 LQEHMRSK   73 (100)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHcCc
Confidence            99999854

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.01  E-value=0.0036  Score=37.30  Aligned_cols=25  Identities=48%  Similarity=1.022  Sum_probs=19.6

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      +|+|  ..|++.|....+|..|++.|.
T Consensus         1 ~~~C--~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFEC--DECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEE--TTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCC--CccCCccCChhHHHHHhHHhc
Confidence            4778  778888888888888887764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.96  E-value=0.0051  Score=34.89  Aligned_cols=23  Identities=52%  Similarity=1.094  Sum_probs=17.3

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |.|  +.|++.|.+...|..|+++|
T Consensus         1 ~~C--~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQC--PICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE---SSTS-EESSHHHHHHHHHHH
T ss_pred             CCC--cCCCCcCCcHHHHHHHHHhh
Confidence            578  67888888888888888775

...

>smart00355 ZnF_C2H2 zinc finger

Probab=95.57  E-value=0.013  Score=33.49  Aligned_cols=24  Identities=54%  Similarity=1.013  Sum_probs=17.2

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |+|  ..|++.|.....|..|++.|.
T Consensus         1 ~~C--~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRC--PECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCC--CCCcchhCCHHHHHHHHHHhc
Confidence            456  667777777777777777664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=95.31  E-value=0.0069  Score=57.17  Aligned_cols=71  Identities=23%  Similarity=0.461  Sum_probs=47.4

Q ss_pred             CCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCC
Q psy16225        195 DTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGK  272 (290)
Q Consensus       195 e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgK  272 (290)
                      +++|+|++  |+|.|...-.|+-|+.--|...+..+.      .-++--..|            -...|||.|  +.|+|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~------p~p~~~~~F------------~~~~KPYrC--evC~K  406 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN------PSPEKMNIF------------SAKDKPYRC--EVCDK  406 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCC------CCccccccc------------cccCCceec--cccch
Confidence            48999987  999999999999998643322221000      001111122            345799999  67999


Q ss_pred             ccCChHHHHHHhh
Q psy16225        273 VFARSENLKIHKR  285 (290)
Q Consensus       273 sFs~~s~L~~H~r  285 (290)
                      ++.....|+-|..
T Consensus       407 RYKNlNGLKYHr~  419 (423)
T COG5189         407 RYKNLNGLKYHRK  419 (423)
T ss_pred             hhccCccceeccc
Confidence            9999999988853

>smart00355 ZnF_C2H2 zinc finger

Probab=94.71  E-value=0.027  Score=32.11  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=14.3

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.|..|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            3566666666666666666654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.10  E-value=0.031  Score=39.08  Aligned_cols=32  Identities=19%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVG  223 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g  223 (290)
                      +..+.+..|++|+..+.+..+|++|+...|..
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            44457778888888888888888888775644

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.08  E-value=0.026  Score=53.11  Aligned_cols=121  Identities=23%  Similarity=0.292  Sum_probs=85.6

Q ss_pred             CcccccccCccccccCchhhHHHH-hcCCC--CCCcCC--ccCcccCChHHHHHhhhhcccCCCccccc--Cc-------
Q psy16225        167 AMQSAGTHGAFFRYMRQPIKQDMT-CLWID--TPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTH--AC-------  232 (290)
Q Consensus       167 ~~~~C~~Cg~~F~~~~~l~~H~~~-~h~~e--~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~--~C-------  232 (290)
                      ..+.|..|...|.....+.+|... -|.++  +++.|.  .|++.|.+...+.+|... |.......+.  .|       
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  366 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL-HTSISPAKEKLLNSSSKFSPL  366 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc-ccCCCccccccccCccccccc
Confidence            468899999999999999999884 58888  899999  799999999999999887 4332211100  00       


Q ss_pred             ------------------cccCC--CCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        233 ------------------FWDGC--PRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       233 ------------------~~~~C--~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                                        ....|  ..|-..+.....+..|...|...+.+.|.+..|.+.|.....+..|++.|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         367 LNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             cCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence                              00011  124566666667777777777666555555788888888888888877664

>PRK04860 hypothetical protein; Provisional

Probab=94.07  E-value=0.019  Score=49.48  Aligned_cols=40  Identities=25%  Similarity=0.474  Sum_probs=33.8

Q ss_pred             cccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChH
Q psy16225        233 FWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSE  278 (290)
Q Consensus       233 ~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s  278 (290)
                      ..|.|. |++   ....+.+|.++|+++++|.|  ..|++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC--~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRC--RRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEEC--CCCCceeEEec
Confidence            458997 987   66778999999999999999  88999987543

>KOG2231|consensus

Probab=93.19  E-value=0.11  Score=53.92  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             ccccccCcccc---------------ccCchhhHHHHhcCCCCCCcCCccC---------cccCChHHHHHhhhhcccCC
Q psy16225        169 QSAGTHGAFFR---------------YMRQPIKQDMTCLWIDTPGPRKTCG---------KMFNNMHEIVTHLTVEHVGG  224 (290)
Q Consensus       169 ~~C~~Cg~~F~---------------~~~~l~~H~~~~h~~e~~~~C~~Cg---------KsF~~~~~L~~H~~~~H~g~  224 (290)
                      +.|..|+..|.               ....|.+|+...|   +.+.|.+|-         ...-+..+|..|+..--.+.
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~  176 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDD  176 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHHHHHHHHhcCCCcc
Confidence            56777777763               5566777775444   233333332         11123445666654422111


Q ss_pred             CcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCC----CCCCCccCChHHHHHHhhh
Q psy16225        225 PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPF----PTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       225 ~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~----~~CgKsFs~~s~L~~H~rt  286 (290)
                      ..+.    ....|..|...|.....|.+|++.+.    |.|.|    +.++..|..-..|..|-|.
T Consensus       177 ~s~r----Ghp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~  234 (669)
T KOG2231|consen  177 ESCR----GHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK  234 (669)
T ss_pred             cccc----CCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence            1111    12356667777777767766666432    33322    1123445555566666543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=93.13  E-value=0.036  Score=52.43  Aligned_cols=69  Identities=7%  Similarity=-0.028  Sum_probs=43.4

Q ss_pred             CCcccc--cccCccccccCchhhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCC
Q psy16225        166 NAMQSA--GTHGAFFRYMRQPIKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNG  241 (290)
Q Consensus       166 ~~~~~C--~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cg  241 (290)
                      ...|.|  ..|.|.|+....|+.|++--|...+..+-.  +--..|             ....++        |.|+.|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F-------------~~~~KP--------YrCevC~  405 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF-------------SAKDKP--------YRCEVCD  405 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc-------------cccCCc--------eeccccc
Confidence            368999  579999999999999988655322221111  000111             122233        7788888


Q ss_pred             CCCCcchhhhchhh
Q psy16225        242 RPFKAKYKLVNHIR  255 (290)
Q Consensus       242 ksF~sks~L~~H~r  255 (290)
                      |.+++...|+-|+.
T Consensus       406 KRYKNlNGLKYHr~  419 (423)
T COG5189         406 KRYKNLNGLKYHRK  419 (423)
T ss_pred             hhhccCccceeccc
Confidence            88888877877754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.59  E-value=0.072  Score=31.84  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=13.3

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666666543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.58  E-value=0.11  Score=36.37  Aligned_cols=30  Identities=37%  Similarity=0.702  Sum_probs=19.1

Q ss_pred             CCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       258 tgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ..++|-.|  ++|+..+.+..+|++|+..+.+
T Consensus        20 ~S~~PatC--P~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   20 QSEQPATC--PICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             TTS--EE---TTT--EESSHHHHHHHHHHHTT
T ss_pred             ccCCCCCC--CcchhhccchhhHHHHHHHHhc
Confidence            34677888  7888888888888888876543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.55  E-value=0.061  Score=31.25  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=15.7

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.|++|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4577777777777777777654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.09  E-value=0.082  Score=30.69  Aligned_cols=23  Identities=35%  Similarity=0.777  Sum_probs=17.7

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |.|  ..|++.|.....|+.|++.+
T Consensus         1 ~~C--~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYC--DICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHTTH
T ss_pred             CCC--CCCCCCcCCHHHHHHHHCcC
Confidence            567  67888888888888887654

>KOG1146|consensus

Probab=91.84  E-value=0.084  Score=57.95  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             cccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchh
Q psy16225        170 SAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYK  249 (290)
Q Consensus       170 ~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~  249 (290)
                      .|..|+..+...+.+.-|...-+.-.+.+.|..|++.|.....|..|+|..|.+..-   ..|.|         +.....
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~---------gq~~~~  505 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKA---------GQNHPR  505 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch---hHhHh---------cccccc
Confidence            355666666666666666555455568899999999999999999999986644321   12221         111111


Q ss_pred             hhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhh
Q psy16225        250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       250 L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      +.+-.-.-.+.++|.|  ..|...+..+.+|.+|++.
T Consensus       506 ~arg~~~~~~~~p~~C--~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  506 LARGEVYRCPGKPYPC--RACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccccccCCCCcccc--eeeeeeeecchHHHHHHHH
Confidence            1110111234578999  7799999999999999863

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.30  E-value=0.077  Score=49.84  Aligned_cols=73  Identities=26%  Similarity=0.402  Sum_probs=47.7

Q ss_pred             CCcCCccCcccCChHHHHHhhhh-cccCC--CcccccCccccCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCCCCC
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV-EHVGG--PECTTHACFWDGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG  271 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~-~H~g~--~~~~~~~C~~~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~~Cg  271 (290)
                      ++.|..|...|.....|.+|.+. .|.++  .+        +.|+  .|++.|.....+..|...|.+.+++.|....|.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP--------FSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSS  360 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCc--------eeeeccCCCccccccccccCCcccccCCCccccccccCc
Confidence            56777777777777777777772 25554  33        4555  677777777777777777777776666555555


Q ss_pred             CccCCh
Q psy16225        272 KVFARS  277 (290)
Q Consensus       272 KsFs~~  277 (290)
                      +.+...
T Consensus       361 ~~~~~~  366 (467)
T COG5048         361 SKFSPL  366 (467)
T ss_pred             cccccc
Confidence            554433

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.26  E-value=0.12  Score=29.89  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=13.2

Q ss_pred             CcCCccCcccCChHHHHHhhhhcc
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      |.|+.|+.... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666776665 666777766644

>KOG2893|consensus

Probab=90.42  E-value=0.058  Score=49.26  Aligned_cols=41  Identities=32%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             CCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHH
Q psy16225        237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH  283 (290)
Q Consensus       237 C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H  283 (290)
                      |.+|++-|.....|++|++    .|.|+|  .+|.|...+--.|.+|
T Consensus        13 cwycnrefddekiliqhqk----akhfkc--hichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK----AKHFKC--HICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhh----hcccee--eeehhhhccCCCceee
Confidence            6666777777766666665    345677  5576665555555554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=89.70  E-value=0.13  Score=30.75  Aligned_cols=21  Identities=38%  Similarity=0.814  Sum_probs=11.7

Q ss_pred             ccCCCCCCCCccCChHHHHHHhh
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      |.|  ..|++.|.+...|..|++
T Consensus         2 ~~C--~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYC--DACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBB--TTTTBBBSSHHHHHCCTT
T ss_pred             CCc--ccCCCCcCCHHHHHHHHc
Confidence            445  455666655555555554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2893|consensus

Probab=89.09  E-value=0.16  Score=46.36  Aligned_cols=39  Identities=10%  Similarity=-0.036  Sum_probs=18.5

Q ss_pred             ccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHH
Q psy16225        171 AGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIV  214 (290)
Q Consensus       171 C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~  214 (290)
                      |=.|++.|.+.+.|++|.+.     +-|+|.+|.|..-+-..|.
T Consensus        13 cwycnrefddekiliqhqka-----khfkchichkkl~sgpgls   51 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKLFSGPGLS   51 (341)
T ss_pred             eeecccccchhhhhhhhhhh-----ccceeeeehhhhccCCCce
Confidence            44555555555555555443     3355555554433333333

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.48  E-value=0.31  Score=28.04  Aligned_cols=22  Identities=36%  Similarity=0.792  Sum_probs=13.5

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |+|  +.|..... ...|.+|++.|
T Consensus         1 y~C--~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKC--PHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE---SSSS-EES-HHHHHHHHHHH
T ss_pred             CCC--CCCCCcCC-HHHHHHHHHhh
Confidence            566  56776666 66777777664

>smart00451 ZnF_U1 U1-like zinc finger

Probab=86.27  E-value=0.57  Score=29.18  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=16.9

Q ss_pred             CCcCCccCcccCChHHHHHhhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      +|.|++|++.|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46678888888877777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=86.14  E-value=0.37  Score=41.53  Aligned_cols=36  Identities=6%  Similarity=-0.010  Sum_probs=17.6

Q ss_pred             cccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccC
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFN  208 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~  208 (290)
                      .|.|. |+.   ....+.+|.++ +.++++|.|..|++.|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri-~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRV-VRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHH-hcCCccEECCCCCceeE
Confidence            45555 554   23334444444 44455555555555543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=84.77  E-value=0.93  Score=26.81  Aligned_cols=19  Identities=32%  Similarity=0.651  Sum_probs=9.1

Q ss_pred             cCCccCcccCChHHHHHhhh
Q psy16225        199 PRKTCGKMFNNMHEIVTHLT  218 (290)
Q Consensus       199 ~C~~CgKsF~~~~~L~~H~~  218 (290)
                      +|..|++.| ....|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455555555 3344444543

>KOG2231|consensus

Probab=81.74  E-value=1.4  Score=45.86  Aligned_cols=93  Identities=23%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             CchhhHHHHhcCCC----CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhc
Q psy16225        182 RQPIKQDMTCLWID----TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH  257 (290)
Q Consensus       182 ~~l~~H~~~~h~~e----~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvH  257 (290)
                      .+|..|++.--..+    .-..|+.|.+.|....+|.+|++.+|..     |+.|..  -..++.-|..-..|..|-|.+
T Consensus       163 ~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~-----chfC~~--~~~~neyy~~~~dLe~HfR~~  235 (669)
T KOG2231|consen  163 AELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEF-----CHFCDY--KTGQNEYYNDYDDLEEHFRKG  235 (669)
T ss_pred             HHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeh-----eeecCc--ccccchhcccchHHHHHhhhc
Confidence            34566655422222    2257999999999999999999986622     111210  122345566667788887744


Q ss_pred             CCCCcccCCCCCCC-CccCChHHHHHHhh
Q psy16225        258 TGEKPFPCPFPTCG-KVFARSENLKIHKR  285 (290)
Q Consensus       258 tgeKpf~C~~~~Cg-KsFs~~s~L~~H~r  285 (290)
                          -|.|....|- +.|...-.+.++++
T Consensus       236 ----HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  236 ----HFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             ----CccccccccccceeeehhHHHHHHH
Confidence                3677533453 34444434444444

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=80.01  E-value=1.7  Score=25.72  Aligned_cols=17  Identities=35%  Similarity=0.976  Sum_probs=9.8

Q ss_pred             CCCCCccCChHHHHHHhh
Q psy16225        268 PTCGKVFARSENLKIHKR  285 (290)
Q Consensus       268 ~~CgKsFs~~s~L~~H~r  285 (290)
                      +.||+.| ....|.+|++
T Consensus         6 ~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    6 PICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CCCCCEE-CHHHHHHHHH
Confidence            5566666 4445666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-44
2ej4_A	95	Functional And Structural Basis Of Nuclear Localiza		1e-28
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		7e-18
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-10
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-08
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-08
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-07
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-07
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		4e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		8e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		8e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		8e-07
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-06
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		2e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		5e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		6e-06
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		9e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		7e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		6e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		6e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		9e-04

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 3/109 (2%)
Query: 183 QPIKQDMTCLWIDTPG---PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
           QPIKQ+++C WID      P+K+C + F+ MHE+VTH+T+EHVGGPE   H C+W+ CPR
Sbjct: 8   QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 68  EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116

>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization Signal In Zic3 Zinc Finger Domain: A Role Of Conserved Tryptophan Residue In The Zinc Finger Domain Length = 95

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 183 QPIKQDMTCLWIDTPG---PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
           QPIKQ+++C WID      P+K+C + F+ MHE+VTH+T+EHVGGPE   H C+W+ CPR
Sbjct: 8   QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFP 264
            G+ FKAKYKLVNHIRVHTGEK  P
Sbjct: 68  EGKSFKAKYKLVNHIRVHTGEKSGP 92

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
           C + F++  ++V H+  EH+ G E     C W GC R  RPFKA+Y LV H+R HTGEKP
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHG-ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
             C F  C K ++R ENLK H R+HT
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHT 93

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 194 IDTPGPR----KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYK 249
           + T GPR      CGK F    ++  H  V     P      C ++GC   G+ F   + 
Sbjct: 27  LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP----FQCTFEGC---GKRFSLDFN 79
Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
           L  H+R+HTG++P+ CPF  C K FA+S NLK H  TH + 
Sbjct: 80  LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
           CGK F+    +  H        P           CP  G+ F  K  L  H R HTGEKP
Sbjct: 27  CGKSFSRSDHLAEHQRTHTGEKPY---------KCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
           + C  P CGK F++  NL+ H+RTHT
Sbjct: 78  YKC--PECGKSFSQRANLRAHQRTHT 101

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           CP  G+ F     L  H R HTGEKP+ C  P CGK F++S +L+ H+RTHT
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHT 56

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 224 GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH 283
           G    TH C + GC   G+ +     L  H+R HTGEKP+ C +  CG  FARS+ L  H
Sbjct: 1   GSRTATHTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Query: 284 KRTHT 288
            R HT
Sbjct: 58  YRKHT 62

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           TH C + GC   G+ +     L  H+R HTGEKP+ C +  CG  FARS+ L  H R HT
Sbjct: 5   THTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
           C + GC  N R FK  + L  H R HTGEKP+ C F  C + F+RS+ LK H+R HT V
Sbjct: 9   CAYPGC--NKRYFKLSH-LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           +H C   GC   G+ +     L  H R HTGEKPF C +  C + FARS+ L  H+RTH
Sbjct: 17  SHICSHPGC---GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+   E+  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+   E+  H+ + H G        C         R F     L  HIR HT
Sbjct: 7   PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 57
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 58  GEKPFACDI--CGRKFARSDERKRHTKIH 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+   E+  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+   E+  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 201 KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
           K CGK F     + THL +     P           C   G+ F  K  +  H  +HTGE
Sbjct: 5   KICGKSFKRSSTLSTHLLIHSDTRPY---------PCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KP  C    CGK F++S NL  H R HT
Sbjct: 56  KPHKC--QVCGKAFSQSSNLITHSRKHT 81

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F++   +  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+   ++  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 225 PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
           P+   +AC  + C R    F    +L  HIR+HTG+KPF C    C + F+RS++L  H 
Sbjct: 15  PKMRPYACPVESCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHI 69
Query: 285 RTHT 288
           RTHT
Sbjct: 70  RTHT 73

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           P ++C + F+    +  H+ + H G        C         R F     L  HIR HT
Sbjct: 8   PVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICM--------RNFSRSDHLTTHIRTHT 58
Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           GEKPF C    CG+ FARS+  K H + H
Sbjct: 59  GEKPFACDI--CGRKFARSDERKRHTKIH 85

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           GC   G+ F     LV H RVHTGEKP+ C    CGK F+++  L  H+R HT
Sbjct: 16  GCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
           CP   + F +KY L  H R HTGEKPF C  P CGK + R ENL  H+
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHE 55

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 193 WIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVN 252
           + D PG    C K++     +  HL       P    + C W+GC      F    +L  
Sbjct: 17  YCDYPG----CTKVYTKSSHLKAHLRTHTGEKP----YKCTWEGCDWR---FARSDELTR 65
Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           H R HTG KPF C    C + F+RS++L +H + H
Sbjct: 66  HYRKHTGAKPFQC--GVCNRSFSRSDHLALHMKRH 98

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +AC  + C R    F  K  L  HIR+HTG+KPF C    C + F++  +L  H RTHT
Sbjct: 5   YACPVESCDRR---FSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHT 58

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
           C RN   F     L  HIR HTGEKPF C    CG+ FARS+  K H+
Sbjct: 9   CMRN---FSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C R    F+ K  L +H  VHTGEKP+ C    CG  F R  NLK H R H+
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHS 69

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +AC  + C R    F  K  L  HIR+HTG+KPF C    C + F++   L  H RTHT
Sbjct: 5   YACPVESCDRR---FSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHT 58

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G  +   +KL  H+  HTGEKPFPC    C K F    +L  H  THT
Sbjct: 12  GAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C   G+ F     L  H R HTGEKP+ C    CGK F +  +L  H R HT
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHT 70

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
           C   G+ F  K KL  H+R HTG KP+ C   TC    A S +L  H R H++
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSD 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-50
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-37
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-12
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-34
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-17
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-15
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-17
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-13
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-10
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-17
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-17
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-16
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-10
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-14
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-16
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-16
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-14
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-14
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-13
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-13
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-10
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	7e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	9e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-08
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	6e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-10
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-10
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-10
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-10
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	8e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-10
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-10
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-10
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-10
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-10
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-10
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-10
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-10
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-10
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-10
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-10
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-10
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	8e-10
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-10
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-10
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-10
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-09
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-09
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-09
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-09
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-09
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-09
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-09
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-09
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-09
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-09
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-09
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-09
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-09
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-09
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-09
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	6e-09
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-09
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-09
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-09
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-09
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	3e-08
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	5e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	5e-08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-07
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-07
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	4e-07
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	5e-07
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	2e-06
1ard_A	29	Yeast transcription factor ADR1; transcription reg	5e-06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	9e-06
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	3e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-04

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score =  161 bits (409), Expect = 7e-50
 Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 3/109 (2%)

Query: 183 QPIKQDMTCLWIDT---PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR 239
           QPIKQ+++C WID      P+K+C + F+ MHE+VTH+T+EHVGGPE   H C+W+ CPR
Sbjct: 8   QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67

Query: 240 NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            G+ FKAKYKLVNHIRVHTGEKPFPCPFP CGK+FARSENLKIHKRTHT
Sbjct: 68  EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 5/51 (9%)

Query: 241 GRPFKAKYKLVNHI---RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G    +   +   +    +   +   P    +C + F+    L  H     
Sbjct: 1   GSSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEH 49

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  128 bits (323), Expect = 5e-37
 Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
           C + F++  ++V H+  EH+ G       C W GC R  RPFKA+Y LV H+R HTGEKP
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67

Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
             C F  C K ++R ENLK H R+HT
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHT 93

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHI-RVHTG 259
           C K ++ +  + THL   H G  P  C    C         + F        H  R H+ 
Sbjct: 75  CRKSYSRLENLKTHLRS-HTGEKPYMCEHEGC--------SKAFSNASDRAKHQNRTHSN 125

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           EKP+ C  P C K +    +L+ H +T  
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score =  120 bits (301), Expect = 1e-34
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 3/87 (3%)

Query: 182 RQPIKQDMTCLWIDT---PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP 238
            QPIKQ+++C WID      P+K+C + F+ MHE+VTH+T+EHVGGPE   H C+W+ CP
Sbjct: 7   GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66

Query: 239 RNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           R G+ FKAKYKLVNHIRVHTGEK  P 
Sbjct: 67  REGKSFKAKYKLVNHIRVHTGEKSGPS 93

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            H C + GC    + +     L  H+R HTGEKP+ C +  C   FARS+ L  H R HT
Sbjct: 15  IHYCDYPGC---TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
           C K++     +  HL   H G  P    + C W+GC      F    +L  H R HTG K
Sbjct: 23  CTKVYTKSSHLKAHLRT-HTGEKP----YKCTWEGC---DWRFARSDELTRHYRKHTGAK 74

Query: 262 PFPCPFPTCGKVFARSENLKIHKRTHT 288
           PF C    C + F+RS++L +H + H 
Sbjct: 75  PFQCGV--CNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
               +   C +P C KV+ +S +LK H RTHT
Sbjct: 10  LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT 41

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 73.7 bits (182), Expect = 4e-17
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 232 CFWDGCPRNGRPFKAKYKLVNHIRV-HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C + GC   GR F  +  L +H +  H  +K F CP P CGK F   ++LK H + H+
Sbjct: 10  CDFPGC---GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKR-THT 288
            +G    PC FP CG++F+  + L  HK+  H 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI 34

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
           CG++F+N   +  H   +H+      C   AC        G+ F  K  L  H+++H+  
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPAC--------GKSFNFKKHLKEHMKLHSDT 66

Query: 261 KPFPCPFPTCGKVF 274
           + + C F   G   
Sbjct: 67  RDYICEF--SGPSS 78

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 73.4 bits (181), Expect = 5e-17
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           + C ++ C   G+ FK   +L  H   HT + P+ CP   C K F+    LK H++ H 
Sbjct: 2   YVCHFENC---GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
           CGK F   +++  H    H        + C  +GC    + F    +L  H +VH G   
Sbjct: 9   CGKAFKKHNQLKVHQFS-HTQQL---PYECPHEGC---DKRFSLPSRLKRHEKVHAGYPC 61

Query: 263 FPCPFPTCGKVFAR-SENLKIHKRTH 287
                 +C  V    +  LK     H
Sbjct: 62  KKD--DSCSFVGKTWTLYLKHVAECH 85

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 72.8 bits (179), Expect = 5e-17
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVF 274
           +  +   +      +H C   GC   G+ +     L  H R HTGEKPF C +  C + F
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGC---GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59

Query: 275 ARSENLKIHKRTH 287
           ARS+ L  H+RTH
Sbjct: 60  ARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 246 AKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                       +  +   C  P CGK + +S +LK H RTHT
Sbjct: 1   GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 73.7 bits (182), Expect = 9e-17
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 203 CGKMFNNMHEIVTHLTVEHVGG-P-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
           CGK F    ++  H  V H G  P +CT   C        G+ F   + L  H+R+HTG+
Sbjct: 40  CGKAFVESSKLKRHQLV-HTGEKPFQCTFEGC--------GKRFSLDFNLRTHVRIHTGD 90

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +P+ CPF  C K FA+S NLK H  TH 
Sbjct: 91  RPYVCPFDGCNKKFAQSTNLKSHILTHA 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 71.4 bits (176), Expect = 7e-16
 Identities = 37/93 (39%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 199 PRKTCGKMFNNMHEIVTHLTVEHVGGP---ECTTHACFWDGCPRNGRPFKAKYKLVNHIR 255
           P K C KMF +   +  H    H  GP    C    C        G+ F    KL  H  
Sbjct: 9   PHKGCTKMFRDNSAMRKH---LHTHGPRVHVCA--EC--------GKAFVESSKLKRHQL 55

Query: 256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           VHTGEKPF C F  CGK F+   NL+ H R HT
Sbjct: 56  VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 88

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           T AC   GC    + F+    +  H+  H G +   C    CGK F  S  LK H+  HT
Sbjct: 5   TIACPHKGC---TKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHT 58

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
            +   CP   C K+F  +  ++ H  TH  
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTHGP 32

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 72.2 bits (178), Expect = 1e-16
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           H C + GC   G+ +     L  H+R HTGEKP+ C +  CG  FARS+ L  H R HT
Sbjct: 6   HTCDYAGC---GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 65.6 bits (161), Expect = 4e-14
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
           CGK +     +  HL   H G  P    + C WDGC   G  F    +L  H R HTG +
Sbjct: 13  CGKTYTKSSHLKAHLRT-HTGEKP----YHCDWDGC---GWKFARSDELTRHYRKHTGHR 64

Query: 262 PFPCPFPTCGKVFARSENLKIHKRTH 287
           PF C    C + F+RS++L +H + H
Sbjct: 65  PFQCQK--CDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            T      C +  CGK + +S +LK H RTHT
Sbjct: 2   RTATHT--CDYAGCGKTYTKSSHLKAHLRTHT 31

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKPF C +P CG  F+RS+ L  H+R+H+
Sbjct: 2   SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
            AC W GC   G  F    +L  H R H+G KP   
Sbjct: 13  FACTWPGC---GWRFSRSDELSRHRRSHSGVKPSGP 45

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 73.0 bits (180), Expect = 7e-16
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 202 TCGKMFNNMHEIVTHL---TVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
            C   F     +  H        +    C    C        G+ FK   +L  H   HT
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENC--------GKAFKKHNQLKVHQFSHT 130

Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            + P+ CP   C K F+    LK H++ H 
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
           CG  +N   ++  HL   H G  P  C    C         + F + + L  H   HTGE
Sbjct: 20  CGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGC--------EKGFTSLHHLTRHSLTHTGE 70

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           K F C    C   F    N+K H     
Sbjct: 71  KNFTCDSDGCDLRFTTKANMKKHFNRFH 98

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 226 ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR 285
            C+   C        G  +   +KL  H+  HTGEKPFPC    C K F    +L  H  
Sbjct: 14  ICSFADC--------GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65

Query: 286 THT 288
           THT
Sbjct: 66  THT 68

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 251 VNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +    +    K + C F  CG  + ++  L+ H   HT
Sbjct: 1   MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHT 38

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 203 CGKMFNNMHEIVTHLTVEHVGGP--ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG- 259
           CGK F   +++  H    H      EC    C         + F    +L  H +VH G 
Sbjct: 112 CGKAFKKHNQLKVHQFS-HTQQLPYECPHEGC--------DKRFSLPSRLKRHEKVHAGY 162

Query: 260 --EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
             +K   C F   GK +  +  LK     H +
Sbjct: 163 PCKKDDSCSF--VGKTW--TLYLKHVAECHQD 190

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 69.5 bits (171), Expect = 4e-15
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             C + GC    + +     L  H R HTGEKP+ C F  C + F+RS+ LK H+R HT
Sbjct: 7   FMCAYPGC---NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 66.8 bits (164), Expect = 3e-14
 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 201 KTCGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
             C K +  +  +  H    H G  P +C    C         R F    +L  H R HT
Sbjct: 12  PGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDC--------ERRFSRSDQLKRHQRRHT 62

Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G KPF C   TC + F+RS++LK H RTHT
Sbjct: 63  GVKPFQCK--TCQRKFSRSDHLKTHTRTHT 90

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 24/51 (47%), Positives = 27/51 (52%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           C    R F     L  H R HTGEKPF C +P+C K FARS+ L  H   H
Sbjct: 69  CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           + ++PF C +P C K + +  +L++H R HT
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT 32

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 66.8 bits (164), Expect = 1e-14
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
            R F     L  HIR HTGEKPF C    CG+ FARS+  K H+     
Sbjct: 10  MRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQHI 56

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK---RTHT 288
           C   GR F    +   H  +     P         ++ +++ +L+      +   
Sbjct: 34  CDICGRKFARSDERKRHRDIQH-ILPILED--KVEELLSKNYHLENEVARLKKLV 85

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KPF C    C + F+RS++L  H RTHT
Sbjct: 2   KPFQCR--ICMRNFSRSDHLTTHIRTHT 27

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +AC  + C    R F    +L  HIR+HTG+KPF C    C + F+RS++L  H RTHT
Sbjct: 20  YACPVESC---DRRFSRSDELTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            V    +P+ CP  +C + F+RS+ L  H R HT
Sbjct: 12  YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT 45

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 64.4 bits (158), Expect = 1e-13
 Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C    R F     L  HIR HTGEKPF C    CG+ FARS+  K H + H 
Sbjct: 37  CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHL 86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           E+P+ CP  +C + F++S +L  H R HT
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHT 30

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 62.9 bits (154), Expect = 5e-13
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F+  Y L  H   H+GEKP+ CP   CG  F R + +  H R+H 
Sbjct: 14  GKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHD 59

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE--KPFPCPFPTCGKVFARSENLKIH-KRTHT 288
           CP  G  FK K ++  H+R H G   KP+ C   +CGK F+R ++L  H K+ H+
Sbjct: 38  CPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHS 90

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            +G     C    CGK+F    +L  HK +H+
Sbjct: 2   SSGSSGVACE--ICGKIFRDVYHLNRHKLSHS 31

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 62.4 bits (153), Expect = 6e-13
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F  K KL  H+R HTG KP+ C   TC    A S +L  H R H+
Sbjct: 15  GKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHS 60

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 60.5 bits (148), Expect = 3e-12
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                    L  H+R+H+ E+PF C    C      S  L +H R+HT
Sbjct: 43  DYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHT 88

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.9 bits (123), Expect = 9e-09
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                P  C    CGK F+R + LK H R HT
Sbjct: 3   SGSSGPHKCE--VCGKCFSRKDKLKTHMRCHT 32

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 62.1 bits (152), Expect = 6e-13
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ FK    L  H+ +H+  +P+PC +  CGK F +  ++K H   HT
Sbjct: 8   GKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHT 53

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 61.3 bits (150), Expect = 1e-12
 Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 201 KTCGKMFNNMHEIVTHLTVEHVGG-P-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
           K CGK F     + THL + H    P  C    C        G+ F  K  +  H  +HT
Sbjct: 5   KICGKSFKRSSTLSTHLLI-HSDTRPYPC--QYC--------GKRFHQKSDMKKHTFIHT 53

Query: 259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           GEKP  C    CGK F++S NL  H R HT
Sbjct: 54  GEKPHKC--QVCGKAFSQSSNLITHSRKHT 81

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           GR F   Y L+ H R HT E+P+ C    C K F R ++L+ H+  H+
Sbjct: 24  GRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHS 69

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            + F+ +  L +H  +H+ EKPF C    CGK F +S  L +HK  H 
Sbjct: 52  HKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHM 97

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.8 bits (146), Expect = 9e-12
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                     +K F C F  CG+ F +S NL IH+RTHT
Sbjct: 5   SSGGRLPSKTKKEFICKF--CGRHFTKSYNLLIHERTHT 41

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.2 bits (147), Expect = 2e-12
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C R    F+ K  L +H  VHTGEKP+ C    CG  F R  NLK H R H+
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIHS 69

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 56.3 bits (137), Expect = 7e-11
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             +H  +   +KP+ C    C   F    NL  HK  HT
Sbjct: 5   HHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHT 41

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 59.8 bits (146), Expect = 4e-12
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 249 KLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +  R H+GEKP+ C    C   F +S  +K+H     
Sbjct: 2   SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKH 39

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 53.3 bits (129), Expect = 8e-10
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE--KPFPCPFPTCGKVFARSENLKIHKRT-HT 288
           C      F     +  HI     E    F CP   C  V AR  +L +H R  H+
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHS 70

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 59.0 bits (144), Expect = 4e-12
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
           C    R F  +  L  H R HT EKP+PC    C + F R + L  H ++ H+
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           + F C    C + FAR E+LK H R+HT
Sbjct: 1   RSFVCE--VCTRAFARQEHLKRHYRSHT 26

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 58.3 bits (142), Expect = 9e-12
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 237 CPRNGRPFKAKYKLVNHIRV--HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
           C    R +        H         K +PCPF  C K F R +N+  H +   ++
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
               GE  + C    C +V+    N   H  T  
Sbjct: 3   FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSH 34

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 57.9 bits (141), Expect = 2e-11
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +K  L  H R+H  ++PF C    C     +  NL  H +   
Sbjct: 16  SYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFH 61

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +   P  C    C    +    L+IH+R H 
Sbjct: 2   SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHC 33

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C   G+ F     L  H R HTGEKP+ C    CGK F +  +L  H R HT
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.3 bits (137), Expect = 7e-11
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                      + + C    CGK F+ S +L  H+RTHT
Sbjct: 6   SGRSEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHT 42

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F     L  H R HTGEKP+ CP   CGK F+R +NL  H+RTHT
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHT 157

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 244 FKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                  V    +  GEKP+ CP   CGK F+RS++L  H+RTHT
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHT 45

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F  K  L  H R HTGEKP+ C  P CGK F++  NL+ H+RTHT
Sbjct: 56  GKSFSDKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHT 101

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F     L  H R HTGEKP+ CP   CGK F+  ++L  H+RTHT
Sbjct: 28  GKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHT 73

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G+ F  +  L  H R HTGEKP+ C  P CGK F+R + L +H+RTHT
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHT 185

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             +  R HTGEKP+ C    C K F + + L +H + + 
Sbjct: 3   SGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYH 39

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGE----KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C    + F+ K  L  H + +         F C    CGK F R   +  H     
Sbjct: 18  CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCA 71

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 7/72 (9%)

Query: 203 CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKP 262
           C K F     +  H    +         A F   C + G+ F  +  +  H     G   
Sbjct: 21  CDKTFRQKQLLDMHFKR-YHD--PNFVPAAF--VCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 263 FPCPFPTCGKVF 274
                   G   
Sbjct: 76  VEG--ENSGPSS 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 57.9 bits (141), Expect = 5e-11
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR---THT 288
           CP   + F +KY L  H R HTGEKPF C  P CGK + R ENL  H+     + 
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNR 62

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 55.2 bits (134), Expect = 5e-10
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHT 288
           C      F+ + +L  H+  HTGE P+ C   +C + F + ++L+ H  + H+
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
            +G     C  PTC K F     LK+H R HT
Sbjct: 2   SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHT 31

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 56.3 bits (137), Expect = 5e-11
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           C   G+ F     LV H RVHTGEKP+ C    CGK F+++  L  H+R HT
Sbjct: 17  CVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 +H+GEKP+ C    CGK F+RS  L  H+R HT
Sbjct: 2   SSGSSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHT 38

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 241 GRPFKAKYKLVNHIRVHT---GEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           G   + K  L  H R H        FPC F  CGK F + +++  H+   
Sbjct: 14  GFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
            +G     C    CG    +  +L  H+R H E
Sbjct: 2   SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAE 32

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 55.3 bits (134), Expect = 6e-11
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +PF C +  CGK F RS+ L+ HKRTHT
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHT 28

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 57.1 bits (139), Expect = 8e-11
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 203 CGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
           CGK F +  +   H+++ H+G  P  C    C        G+ FK K+ LV H+++HTG 
Sbjct: 15  CGKSFTHKSQRDRHMSM-HLGLRPYGCG--VC--------GKKFKMKHHLVGHMKIHTGI 63

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KP+ C    C K F   ++   H+   +
Sbjct: 64  KPYEC--NICAKRFMWRDSF--HRHVTS 87

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +G+K +PC    CGK F        H   H 
Sbjct: 3   SGSSGDKLYPC---QCGKSFTHKSQRDRHMSMHL 33

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 17/82 (20%)

Query: 201 KTCGKMFNNMHEIVTHLTVEHVG-GP-ECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT 258
             CGK F   H +V H+ + H G  P EC         C    + F  +     H  V +
Sbjct: 41  GVCGKKFKMKHHLVGHMKI-HTGIKPYECNI-------C---AKRFMWRDSF--HRHVTS 87

Query: 259 GEKPFPCPFPTCGKVFARSENL 280
             K +        +    +   
Sbjct: 88  CTKSYEA--AKAEQNTTEASGP 107

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     + EKP+ C    CGK + R  NL +H+R H 
Sbjct: 2   SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHM 36

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEKP+PC    CG  F   + LK H R HT
Sbjct: 2   SSGSSGGEKPYPCE--ICGTRFRHLQTLKSHLRIHT 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    C K F    NL +H+RTHT
Sbjct: 3   SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHT 36

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKPF C    C K F    NL +H+RTHT
Sbjct: 2   SSGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHT 36

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C    + F  K  L+ H R HTGEKP   
Sbjct: 15  CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F R   L IH+++HT
Sbjct: 2   SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHT 36

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKPF C    CGK F     L  H   HT
Sbjct: 2   SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHT 36

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEK + C    CGK F+R+  L  H+R H+
Sbjct: 2   SSGSSGTGEKLYNCK--ECGKSFSRAPCLLKHERLHS 36

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F     L+ H R+H+GEKP   
Sbjct: 15  CKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK +    NL +H++ HT
Sbjct: 3   SGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHT 36

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGE PF C    CGKVF    NL IH++ HT
Sbjct: 2   SSGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHT 36

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F  K  L+ H ++HTGE+P   
Sbjct: 15  CSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKPF C    CGK F+R   L +H + HT
Sbjct: 2   SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHT 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +GEKPF C    CGK F  +     H+R+H+
Sbjct: 2   SSGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHS 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG 271
           C   G+ F    +  +H R H+GEKP      + G
Sbjct: 15  CEECGKGFYTNSQCYSHQRSHSGEKPSGP---SSG 46

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +GEKP+ C    CGK + R  +L  H+R HT
Sbjct: 2   SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHT 36

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKPF C    CG  F+ S +L  H R+H 
Sbjct: 3   SGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHE 36

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GE+P+ C    CGK F R  +L  H + H 
Sbjct: 3   SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHF 36

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TG KP+ C    CGK F     L IH RTHT
Sbjct: 2   SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHT 36

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F    +L  H   HT
Sbjct: 2   SSGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHT 36

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F     L+IH++ HT
Sbjct: 2   SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHT 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TG++P+ C    CGK F    +L  H+R+HT
Sbjct: 3   SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHT 36

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ FK K  L+ H R HTGEKP   
Sbjct: 15  CIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +      GEKP+ C    CGK F+    L IH RTH+
Sbjct: 2   SSGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHS 36

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +GEKPF C    CGK F ++  L  H+R HT
Sbjct: 2   SSGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHT 36

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TG KP+ C    C K F+    L +H+R+HT
Sbjct: 2   SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHT 36

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEK + C    CGK F++S +L+ H+R HT
Sbjct: 3   SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHT 36

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 52.5 bits (127), Expect = 9e-10
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKPF C    CGK F+ S  L  H+R HT
Sbjct: 3   SGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHT 36

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 9e-10
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    C K F    +L +H+R HT
Sbjct: 3   SGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHT 36

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEKP+ C   TCG  F +  +L+ H   HT
Sbjct: 2   SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHT 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F    +L IH+ TH+
Sbjct: 3   SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHS 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGE P+ C    CGK F+R   L  H+RTH 
Sbjct: 3   SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHA 36

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F  KY+L++H R H GEKP   
Sbjct: 15  CHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F    NL  H+  HT
Sbjct: 3   SGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHT 36

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F     L+ H+R HT
Sbjct: 3   SGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHT 36

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
             R  TG KPF CP   C + F+RS++L +H++ H  V
Sbjct: 2   STRGSTGIKPFQCP--DCDRSFSRSDHLALHRKRHMLV 37

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEKP+ C    CGK F R  +L  H+R HT
Sbjct: 3   SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHT 36

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +GEKP+ C    CGK F     L +H+RTH 
Sbjct: 2   SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHA 36

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEKP+ C    CGK F++   L  H+RTHT
Sbjct: 3   SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHT 36

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F  +  L  H+R H+
Sbjct: 3   SGSSGTGEKPYNCK--ECGKSFRWASCLLKHQRVHS 36

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TG+KPF C    CGK F    NL  H+R HT
Sbjct: 2   SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHT 36

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F+AK  LV H R+HTGEK  P 
Sbjct: 15  CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +GEKP+ C    CGKVF ++ +L  H R HT
Sbjct: 2   SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHT 36

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F+  ++L +H+R H+
Sbjct: 3   SGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHS 36

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F  + +   H+R HT
Sbjct: 2   SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHT 36

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F    NL  H++ HT
Sbjct: 2   SSGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHT 36

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEKP+ C    CGK F++  +L +H R HT
Sbjct: 2   SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHT 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKPF C    CGK F+    L  H+R HT
Sbjct: 3   SGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHT 36

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEKP+ C    CGK F  S  L  H+R HT
Sbjct: 3   SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHT 36

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGKVF  +  L  H+R HT
Sbjct: 2   SSGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHT 36

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TG K F C    CGK F R   L +H++ HT
Sbjct: 2   SSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHT 36

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F    NL  H++ HT
Sbjct: 3   SGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHT 36

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEK + C    CGKVF+R+  L  H++ HT
Sbjct: 3   SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHT 36

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F +  +L  H+R HT
Sbjct: 3   SGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHT 36

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK FA+  NL  H+R HT
Sbjct: 2   SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGE+ + C    CGK FAR   L +H+R HT
Sbjct: 3   SGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHT 36

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F  K  L+ H R+HTGEKP   
Sbjct: 15  CSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F +   L +H++ HT
Sbjct: 3   SGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHT 36

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    C K F+   +L  H+R H+
Sbjct: 3   SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHS 36

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEKPF C    CGK F ++ +L  H+R HT
Sbjct: 3   SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHT 36

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F +   L +H+R HT
Sbjct: 3   SGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHT 36

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F+++  L  H+R HT
Sbjct: 2   SSGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHT 36

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    C K F +  +L  H++THT
Sbjct: 3   SGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHT 36

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 G+K F C    C K F +S +L +H+R HT
Sbjct: 3   SGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHT 36

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEK + C    C   F+++ +L++H+  H 
Sbjct: 3   SGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHV 36

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TG KP+ C    CGK F+   +L  H+  HT
Sbjct: 2   SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHT 36

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +      GE+   C    CGK F ++ N   H+R HT
Sbjct: 2   SSGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHT 36

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGE+P  C    CGK F +S +L  H+R HT
Sbjct: 2   SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHT 36

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F  S +L  H   H+
Sbjct: 3   SGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHS 36

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.9 bits (123), Expect = 3e-09
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGKVF ++ +L  H+  HT
Sbjct: 2   SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHT 36

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGKVF ++ +L  H+R HT
Sbjct: 3   SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHT 36

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     TGEKP+ C    CGK F  S +L  H R HT
Sbjct: 2   SSGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHT 36

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKPF C    CGK + +  +L  H+R HT
Sbjct: 3   SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHT 36

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEKPF C    CGK F ++ +L  H R HT
Sbjct: 3   SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHT 36

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP  C    CGK F+ +  L +H+R HT
Sbjct: 3   SGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHT 36

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F+++ +L  H+R HT
Sbjct: 3   SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHT 36

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGE+P+ C    CGK F    NL  H++ HT
Sbjct: 3   SGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHT 36

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGKVF R+ +L  H+  HT
Sbjct: 3   SGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHT 36

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGE+ + C    CGK F +   L +H+R H 
Sbjct: 3   SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHR 36

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GEK   C    CGK F     L+IH+R H 
Sbjct: 3   SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHM 36

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GEKP+ C    CGK F+ S  L  H  THT
Sbjct: 3   SGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHT 36

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-09
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGKVF ++ +L  H+R HT
Sbjct: 3   SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHT 36

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP  C    CGK F     L +H+RTH 
Sbjct: 3   SGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHV 36

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-09
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGKVF ++ +L  H+  HT
Sbjct: 3   SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHT 36

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TG KP+ C    CGK F+++  L  H+R HT
Sbjct: 3   SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHT 36

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 7e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +GE+PF C    CGK F R  +L  H R H+
Sbjct: 3   SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHS 36

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 7e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGEKP+ C    CGK F+   +L  H+  HT
Sbjct: 3   SGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHT 36

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 7e-09
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TG+KP+ C    CGKVF ++ +L  H+  HT
Sbjct: 3   SGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHT 36

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 G  P+ C    C K F+    L +H+R HT
Sbjct: 3   SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHT 36

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                TGE P+ C    CGKVF+R + L  H++TH+
Sbjct: 3   SGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHS 36

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +GEKPF C    C K F+    L +H++TH 
Sbjct: 3   SGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHA 34

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 236 GCPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           GC    + F +K  L+ H + H  EKP   
Sbjct: 12  GCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                T  K + C    CGK F R  +L  H++ HT
Sbjct: 3   SGSSGTDSKSYNCN--ECGKAFTRIFHLTRHQKIHT 36

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                +G+KP+ C    C K F +  +L  HKR HT
Sbjct: 3   SGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHT 36

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +GE P+ C    CGK F R + L  H+RTH 
Sbjct: 3   SGSSGENPYECS--ECGKAFNRKDQLISHQRTHA 34

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPC 265
           C   G+ F  K +L++H R H GE     
Sbjct: 13  CSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 48.0 bits (115), Expect = 4e-08
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
           +     +  KP+ C   +CGK F+R ++L  H K+ HT
Sbjct: 2   SSGSSGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHT 37

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 237 CPRNGRPFKAKYKLVNHI-RVHTGEKPFPCPFPTCGKVFA 275
           C   G+ F     L  HI +VHT E+P  C         +
Sbjct: 15  CQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +     +  K   C    CG+ F    +L  H+R HT
Sbjct: 2   SSGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHT 36

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 258 TGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
             +K   C    CGKV+ ++ +L+ H R HT
Sbjct: 4   GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR-THT 288
           +     TG+KP+ C    CGK F ++ +L  H R  HT
Sbjct: 2   SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHT 37

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 GE P+ C    CGK F +  +L +H+R+ +
Sbjct: 2   SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCS 35

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           G   K    L  HIR HT  +P+ C    C   F    NL  H ++  
Sbjct: 8   GIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKA 53

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +GEKP+ C    C + F+ +  L  H++ HT
Sbjct: 3   SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMHT 34

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 47

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
           +K F C FP C K F R  N++ H +TH E
Sbjct: 16  DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
              +G++ + C    CGK F +  +L +H+R HT
Sbjct: 3   SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHT 34

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Length = 32

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
           ++P+ C  P C K F R+ +L  HK++H E
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           + F C    C + FAR E+LK H R+HT
Sbjct: 1   RSFVCEV--CTRAFARQEHLKRHYRSHT 26

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 41.0 bits (96), Expect = 9e-06
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +      GE PF C    C +VF +   L  H+RTH 
Sbjct: 2   SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHA 36

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae} Length = 64

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 188 DMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTH---ACFWDGCPRNGRPF 244
           D+ C W +       C +  +++ ++  HL  +HV           AC W+ C   G   
Sbjct: 1   DLKCKWKE-------CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDT 53

Query: 245 KAKYKLVNHIR 255
            +   +VNHI 
Sbjct: 54  AS---IVNHIN 61

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 250 LVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK 284
                ++H G++   C    CG +F R   L   K
Sbjct: 6   SGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRRK 38

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           CP    PF +   L  HIR    E    CP   C K F  +++   H    
Sbjct: 77  CPLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 237 CPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG 271
           C   G+ F+  Y L  H   H+GEKP+    P+ G
Sbjct: 15  CEICGKIFRDVYHLNRHKLSHSGEKPYSSG-PSSG 48

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                 K   C    CGK+F    +L  HK +H+
Sbjct: 5   SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHS 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.81
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.79
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.77
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.75
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.75
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.73
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.71
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.68
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.63
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.59
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.58
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.58
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.57
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.56
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.56
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.52
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.5
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.5
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.49
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.46
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.45
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.41
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.41
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.39
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.37
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.36
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.34
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.34
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.33
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.32
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.31
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.3
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.3
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.29
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.28
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.26
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.23
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.23
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.23
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.21
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.19
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.19
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.19
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.18
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.12
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.1
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.1
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.06
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.05
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.03
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.02
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.99
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.98
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.95
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.93
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.91
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.8
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.8
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.74
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.72
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.72
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.7
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.7
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.68
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.67
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.66
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.66
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.66
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.66
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.65
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.65
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.64
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.63
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.63
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.63
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.63
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.63
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.63
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.63
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.62
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.62
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.62
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.62
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.61
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.61
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.61
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.61
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.61
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.6
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.6
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.6
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.6
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.59
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.59
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.59
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.59
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.58
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.57
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.57
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.57
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.56
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.56
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.56
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.56
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.56
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.55
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.55
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.54
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.54
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.53
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.53
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.53
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.53
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.51
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.51
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.51
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.51
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.5
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.5
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.5
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.49
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.49
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.48
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.48
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.48
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.47
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.47
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.46
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.44
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.44
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.44
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.41
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.41
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.39
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.39
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.38
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.38
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.36
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.36
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.35
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.35
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.35
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.34
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.34
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.33
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.32
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.31
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.31
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.28
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.25
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.21
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.17
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.13
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.12
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.12
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.11
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.11
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.1
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.09
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.05
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.04
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.04
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.02
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.99
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.98
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.93
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.14
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.9
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.89
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.11
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.85
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.84
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.79
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.77
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.74
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.74
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.65
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.82
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.63
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.62
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.62
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.61
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.58
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.55
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.53
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.52
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.52
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.48
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.48
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.48
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.48
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.47
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.6
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.47
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.45
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.45
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.42
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.4
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.39
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.36
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.35
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.46
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.33
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.24
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.21
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.2
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.18
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.17
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.64
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.4
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.1
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	92.95
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.7
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	89.06
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	88.59
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	86.33

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=3.5e-21  Score=152.40  Aligned_cols=115  Identities=19%  Similarity=0.279  Sum_probs=103.3

Q ss_pred             CCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcc--cCCCcccccCccccCCCCCCC
Q psy16225        165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEH--VGGPECTTHACFWDGCPRNGR  242 (290)
Q Consensus       165 ~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H--~g~~~~~~~~C~~~~C~~Cgk  242 (290)
                      ....|.|..|++.|.....|.+|+++ |..+++|.|++|++.|.+...|.+|++.++  .++.+        +.|.+|++
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~--------~~C~~C~~   74 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV--------FTCSVCQE   74 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHH-HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC--------EECSSSCC
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHh-CCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC--------eECCCCCC
Confidence            44579999999999999999999887 677899999999999999999999998743  33333        89999999


Q ss_pred             CCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhh-hcCCC
Q psy16225        243 PFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       243 sF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r-tHTGE  290 (290)
                      .|..+..|..|+++|.++++|+|  +.|++.|.+...|.+|++ .|.|+
T Consensus        75 ~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           75 TFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             EESSHHHHHHHHHHHSSSCSEEC--SSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             ccCCHHHHHHHHHHcCCCCCccC--CCccchhCCHHHHHHHHHHHCCCC
Confidence            99999999999999999999999  889999999999999987 68774

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=1.1e-20  Score=150.26  Aligned_cols=113  Identities=32%  Similarity=0.506  Sum_probs=100.1

Q ss_pred             Cccccc--ccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCC
Q psy16225        167 AMQSAG--THGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGR  242 (290)
Q Consensus       167 ~~~~C~--~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--Cgk  242 (290)
                      ..|.|.  .|++.|.+...|.+|+.+ | ++++|.|++|++.|.+...|..|+++ |.++.+        +.|..  |++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h-~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~   72 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHT-H-GPRVHVCAECGKAFVESSKLKRHQLV-HTGEKP--------FQCTFEGCGK   72 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGG-G-SCCCEECTTTCCEESSHHHHHHHGGG-TSCCCC--------EECCSTTCCC
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHH-c-CCCCeECCCCCchhCCHHHHHHHHHH-cCCCCC--------eeCCCCCCcC
Confidence            357898  899999999999999887 4 77999999999999999999999998 555544        78875  999


Q ss_pred             CCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        243 PFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       243 sF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|.....|..|+++|.++++|.|++..|++.|.+...|.+|+++|++|
T Consensus        73 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             EESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             ccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            999999999999999999999995446999999999999999999985

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.81  E-value=1.4e-20  Score=148.19  Aligned_cols=113  Identities=27%  Similarity=0.417  Sum_probs=102.0

Q ss_pred             CCCcccccc--cCccccccCchhhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCC
Q psy16225        165 TNAMQSAGT--HGAFFRYMRQPIKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRN  240 (290)
Q Consensus       165 ~~~~~~C~~--Cg~~F~~~~~l~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~C  240 (290)
                      ....|.|..  |++.|.....|.+|+.+ |.++++|.|.  .|++.|.+...|..|+++ |.++.+        +.|++|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C   72 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKP--------FQCKTC   72 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHH-HHTTCCEECCSTTCCCEESSHHHHHHHHHH-HHCCCC--------EECTTT
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHh-hCCCCCccCCCCCCcCccCCHHHHHHHHHH-cCCCCC--------ccCCcc
Confidence            345789986  99999999999999887 6678999999  799999999999999999 555544        799999


Q ss_pred             CCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       241 gksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      ++.|..+..|..|+++|+++++|+|.++.|++.|.+...|.+|+++|
T Consensus        73 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999999999999995557999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=2.5e-20  Score=153.95  Aligned_cols=117  Identities=29%  Similarity=0.415  Sum_probs=104.2

Q ss_pred             CCCcccccccCccccccCchhhHHHHhcCCCCC--------CcCCccCcccCChHHHHHhhhhcccCCCcccccCccccC
Q psy16225        165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTP--------GPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDG  236 (290)
Q Consensus       165 ~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~--------~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~  236 (290)
                      ....|.|..|++.|.....|.+|+...|..+.+        |.|.+|++.|.+...|..|+++ |.++.+        |.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~   92 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKP--------FP   92 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHH-HHCCCS--------EE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHh-cCCCCc--------cc
Confidence            445789999999999999999999887776644        8999999999999999999998 555544        78


Q ss_pred             CCC--CCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        237 CPR--NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       237 C~~--CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |..  |++.|..+..|..|+++|+++++|+|.+++|++.|.+...|.+|+++|+||
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             CCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            988  999999999999999999999999993325999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.81  E-value=1.2e-20  Score=161.06  Aligned_cols=111  Identities=33%  Similarity=0.591  Sum_probs=79.7

Q ss_pred             cccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcc
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAK  247 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sk  247 (290)
                      .|.|..|++.|.....|..|+.+ |.++++|.|++|++.|.+...|..|+++ |.++.+        |.|++|++.|..+
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~  146 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKP--------YKCPECGKSFSRE  146 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHTCCCEECTTTCCEESSHHHHHHHHHH-HHCCCC--------EECTTTCCEESCH
T ss_pred             CccCcccCCccCCHHHHHHHHHh-cCCCCCCcCCCCCCccCCHHHHHHHHHH-hCCCCC--------eECCCCCcccCCH
Confidence            45566666666555555555554 3344556666666666666666666655 333332        7899999999999


Q ss_pred             hhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        248 YKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       248 s~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ..|..|+++|+++++|+|  +.|++.|.+...|.+|+++|+||
T Consensus       147 ~~L~~H~~~H~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          147 DNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             HHHHHHHHHHHCCCCEEC--TTTCCEESSHHHHHHHHTTC---
T ss_pred             HHHHHHHHhcCCCCCeEC--CCCCCccCCHHHHHHHHHhcCCC
Confidence            999999999999999999  78999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.79  E-value=4.6e-20  Score=157.49  Aligned_cols=113  Identities=33%  Similarity=0.570  Sum_probs=87.1

Q ss_pred             CCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCC
Q psy16225        166 NAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFK  245 (290)
Q Consensus       166 ~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~  245 (290)
                      ...|.|..|++.|.....|.+|+.+ |.++++|.|+.|++.|.+...|..|++++ .++.+        +.|+.|++.|.
T Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~--------~~C~~C~~~f~  116 (190)
T 2i13_A           47 EKPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKP--------YACPECGKSFS  116 (190)
T ss_dssp             -CCEECTTTCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHHHHHHHH-HTCCC--------EECTTTCCEES
T ss_pred             CCCccCCCcCchhCCHHHHHHHHHh-cCCCCCccCcccCCccCCHHHHHHHHHhc-CCCCC--------CcCCCCCCccC
Confidence            3456677777777766666666665 44556677777777777777777777663 33332        78999999999


Q ss_pred             cchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        246 AKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       246 sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .+..|..|+++|.++++|+|  +.|++.|.+...|..|+++|+|+
T Consensus       117 ~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A          117 QLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             SHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCCCCCeEC--CCCCcccCCHHHHHHHHHhcCCC
Confidence            99999999999999999999  78999999999999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.77  E-value=7e-19  Score=150.12  Aligned_cols=111  Identities=22%  Similarity=0.314  Sum_probs=77.7

Q ss_pred             cccc--cccCccccccCchhhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcc-cCCCcccccCccccCC--CCC
Q psy16225        168 MQSA--GTHGAFFRYMRQPIKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEH-VGGPECTTHACFWDGC--PRN  240 (290)
Q Consensus       168 ~~~C--~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H-~g~~~~~~~~C~~~~C--~~C  240 (290)
                      .|.|  ..|++.|.....|.+|+++ |.++++|.|+  .|++.|.+...|.+|++..| .+..        .|.|  +.|
T Consensus        42 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~--------~~~C~~~~C  112 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC--------VYVCHFENC  112 (190)
T ss_dssp             SSCCSSTTCCCCCSSHHHHHHHHTT-TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTS--------CCEECSSSS
T ss_pred             CccCCCCCCChhhCCHHHHHHHHHH-ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcc--------eeeCCCCCC
Confidence            4555  5555555555555555544 4444555555  55555555555555553223 2222        2788  889


Q ss_pred             CCCCCcchhhhchhhhcCCCCcccCCCCC--CCCccCChHHHHHHhhhcCC
Q psy16225        241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPT--CGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       241 gksF~sks~L~~H~rvHtgeKpf~C~~~~--CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ++.|..+..|..|+++|+++++|+|  +.  |++.|.+...|.+|+++|+|
T Consensus       113 ~k~f~~~~~L~~H~~~H~~~~~~~C--~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          113 GKAFKKHNQLKVHQFSHTQQLPYEC--PHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CEECSSHHHHHHHHGGGSSSCSSBC--CSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             ccccCCHHHHHHHHHHhCCCCCccC--CCCCCCchhcCHHHHHHHHHHhCC
Confidence            9999999999999999999999999  66  99999999999999999886

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.3e-18  Score=143.14  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=94.0

Q ss_pred             ccccCccccccCchhhHHHHhcCCCCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCCCCCc
Q psy16225        171 AGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGRPFKA  246 (290)
Q Consensus       171 C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--CgksF~s  246 (290)
                      |..|++.|.....|.+|+.+ |.++++|.|..  |++.|.+...|..|+++ |.++.+        |.|+.  |++.|..
T Consensus        42 C~~c~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~  111 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKP--------YMCEHEGCSKAFSN  111 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTHH-HHCCCCCCCCSTTCCCCCSSHHHHHHHHHH-TTTCCC--------EECCSTTCCCEESS
T ss_pred             ccchhhhhhhHHHHHHHHHh-cCCCCCccCCCCCCCCcccCHHHHHHHHHH-cCCCCC--------eeCCCCCCCCccCC
Confidence            34556999999999999877 66778999985  99999999999999998 555544        78998  9999999


Q ss_pred             chhhhchh-hhcCCCCcccCCCCC--CCCccCChHHHHHHhhhcCC
Q psy16225        247 KYKLVNHI-RVHTGEKPFPCPFPT--CGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       247 ks~L~~H~-rvHtgeKpf~C~~~~--CgKsFs~~s~L~~H~rtHTG  289 (290)
                      +..|..|+ ++|.++++|+|  +.  |++.|.+...|.+|+++|+|
T Consensus       112 ~~~L~~H~~~~H~~~~~~~C--~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          112 ASDRAKHQNRTHSNEKPYVC--KLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSTTHHHHHHTTCSCCCEEC--CSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCCCCCeeC--CCCCCccccCCHHHHHHHHHhhcC
Confidence            99999998 79999999999  66  99999999999999999986

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.75  E-value=1.3e-19  Score=149.07  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=86.9

Q ss_pred             CCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       165 ~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      ....|.|..|++.|.....|.+|+++ |.++++|.|++|++.|.+...|..|+++ |.++++        +.|++|++.|
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~--------~~C~~C~k~F   88 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERR--------YQCLACGKSF   88 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHHH-HHCCSCEECSSSSCEESSHHHHHHHHHH-HHTCCC--------EEESSSCCEE
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHHH-cCCCCCeeCCccCeecccccchhhhccc-cCCCcc--------ccCCCCCCCc
Confidence            44578999999999999999999876 7788999999999999999999999998 666655        7899999999


Q ss_pred             CcchhhhchhhhcCCCC------cccCCCCCCCCccCCh
Q psy16225        245 KAKYKLVNHIRVHTGEK------PFPCPFPTCGKVFARS  277 (290)
Q Consensus       245 ~sks~L~~H~rvHtgeK------pf~C~~~~CgKsFs~~  277 (290)
                      ..+..|..|+++|.+++      +|+|  ..|++.|...
T Consensus        89 ~~~~~L~~H~~~hh~~~p~~~~k~~~C--~~C~k~~~~~  125 (133)
T 2lt7_A           89 INYQFMSSHIKSVHSQDPSGDSKLYRL--HPCRSLQIRQ  125 (133)
T ss_dssp             SSHHHHHHHHHHHTCCCTTSSSCCEEE--CCCCSSCCCC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCCCCeec--CCCCchhhhc
Confidence            99999999999887654      5888  7899988643

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.73  E-value=4.6e-19  Score=145.80  Aligned_cols=95  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             hhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCccc
Q psy16225        185 IKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFP  264 (290)
Q Consensus       185 ~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~  264 (290)
                      ..|....|.++++|.|++|++.|.....|.+|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|.
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   80 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNI-HSWEKK--------YPCRYCEKVFPLAEYRTKHEIHHTGERRYQ   80 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHH-HHCCSC--------EECSSSSCEESSHHHHHHHHHHHHTCCCEE
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHH-cCCCCC--------eeCCccCeecccccchhhhccccCCCcccc
Confidence            44545557889999999999999999999999998 666665        899999999999999999999999999999


Q ss_pred             CCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        265 CPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       265 C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |  ++|++.|.+...|..|+++|++|
T Consensus        81 C--~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           81 C--LACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             E--SSSCCEESSHHHHHHHHHHHTCC
T ss_pred             C--CCCCCCcCCHHHHHHHhHHhcCC
Confidence            9  88999999999999999998764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5e-18  Score=139.60  Aligned_cols=112  Identities=22%  Similarity=0.288  Sum_probs=98.4

Q ss_pred             cccccccCccccccCchhhHHHH--hcCCCCCCcCCc-----cCcccCChHHHHHhhhhcccCCCcccccCccccCCCC-
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMT--CLWIDTPGPRKT-----CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR-  239 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~--~h~~e~~~~C~~-----CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~-  239 (290)
                      .+.|..|++.|.+...|..|+..  .|.++++|.|+.     |++.|.+...|.+|+++ |.++.+        +.|.. 
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~   73 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKP--------HKCTFE   73 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH-HHCCCC--------CCCCST
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHh-cCCCCC--------ccCCCC
Confidence            57899999999999999999885  356678898875     34999999999999999 545444        78974 


Q ss_pred             -CCCCCCcchhhhchhhhcCCCCcccCCCCC--CCCccCChHHHHHHh-hhcCCC
Q psy16225        240 -NGRPFKAKYKLVNHIRVHTGEKPFPCPFPT--CGKVFARSENLKIHK-RTHTEV  290 (290)
Q Consensus       240 -CgksF~sks~L~~H~rvHtgeKpf~C~~~~--CgKsFs~~s~L~~H~-rtHTGE  290 (290)
                       |++.|..+..|..|+++|.++++|.|  +.  |++.|.+...|.+|+ ++|+++
T Consensus        74 ~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~~~C~~~f~~~~~L~~H~~~~H~~~  126 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRSHTGEKPYMC--EHEGCSKAFSNASDRAKHQNRTHSNE  126 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHHTTTCCCEEC--CSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCCCcccCHHHHHHHHHHcCCCCCeeC--CCCCCCCccCCHHHHHHHHHHhcCCC
Confidence             99999999999999999999999999  65  999999999999998 899875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=6.3e-18  Score=132.92  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             cCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhh--cccCCCcccccCccccCCCCCCCCC--Ccchhhhchhhh
Q psy16225        181 MRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTV--EHVGGPECTTHACFWDGCPRNGRPF--KAKYKLVNHIRV  256 (290)
Q Consensus       181 ~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~--~H~g~~~~~~~~C~~~~C~~CgksF--~sks~L~~H~rv  256 (290)
                      ...|..|+++ |.++++|.|++|++.|.+...|..|+++  +....+.        +.|.+|++.|  ..+..|..|+++
T Consensus         4 ~~~l~~H~~~-H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~--------~~C~~C~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A            4 GSSGKLYGSI-FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH--------ETDNNNPKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             CCCCCCCCCC-CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC--------CCCCCCCSCCSSCCCCCCCCCCCS
T ss_pred             chhhhhheee-eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC--------ccCCCCCcccccccHHHHHHHhhc
Confidence            4557777765 7888999999999999999999999997  3322222        5699999999  899999999999


Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |+++++|+|  +.|++.|.+...|.+|+++|..
T Consensus        75 H~~~~~~~C--~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           75 EDAQKVLKC--MYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCCCSSCBC--SSSCCBCSSHHHHHHHHHHTTT
T ss_pred             cCCCcceEC--CCCCCccCCHHHHHHHHHHhCC
Confidence            999999999  8899999999999999998754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.2e-17  Score=126.77  Aligned_cols=87  Identities=29%  Similarity=0.515  Sum_probs=79.3

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCC
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGK  272 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgK  272 (290)
                      ..+++|.|.+|++.|.+...|..|+++ |.++.+        |.|..|++.|..+..|..|+++|.++++|+|  ..|++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~   72 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKP--------YKCKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPY   72 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGG-CCCCCS--------EECSSSCCEESSHHHHHHHHHHSCCCCCEEC--SSSSC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHh-cCCCCC--------EeCCCCCCccCCHHHHHHHHHHhCCCCCccC--CCCCC
Confidence            356899999999999999999999998 545444        7999999999999999999999999999999  78999


Q ss_pred             ccCChHHHHHHhhhcCCC
Q psy16225        273 VFARSENLKIHKRTHTEV  290 (290)
Q Consensus       273 sFs~~s~L~~H~rtHTGE  290 (290)
                      .|.....|.+|+++|+||
T Consensus        73 ~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           73 ASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             EESSHHHHHHHHTTCCSC
T ss_pred             ccCCHHHHHHHHHHhcCC
Confidence            999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.71  E-value=7.5e-18  Score=143.68  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=99.5

Q ss_pred             CCCccccc--ccCccccccCchhhHHHHhc-CCCCCCcC--CccCcccCChHHHHHhhhhcccCCCcccccCccccCCCC
Q psy16225        165 TNAMQSAG--THGAFFRYMRQPIKQDMTCL-WIDTPGPR--KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR  239 (290)
Q Consensus       165 ~~~~~~C~--~Cg~~F~~~~~l~~H~~~~h-~~e~~~~C--~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~  239 (290)
                      ....|.|.  .|++.|.....|.+|+...| ..+++|.|  +.|++.|.+...|..|+++ |.++++        |.|+.
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~  139 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLP--------YECPH  139 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG-GSSSCS--------SBCCS
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH-hCCCCC--------ccCCC
Confidence            34578999  89999999999999996667 46789999  9999999999999999998 555555        79988


Q ss_pred             --CCCCCCcchhhhchhhhcCCCCcccCCCCC---CCCccCChHHHHHHhhhcCCC
Q psy16225        240 --NGRPFKAKYKLVNHIRVHTGEKPFPCPFPT---CGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       240 --CgksF~sks~L~~H~rvHtgeKpf~C~~~~---CgKsFs~~s~L~~H~rtHTGE  290 (290)
                        |++.|..+..|..|+++|++   |+|  ..   |++.|.+...|.+|+++|+||
T Consensus       140 ~~C~k~F~~~~~L~~H~~~H~~---~~C--~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          140 EGCDKRFSLPSRLKRHEKVHAG---YPC--KKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             SSCCCBCSSHHHHHHHHTSSCS---CCC--CSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCchhcCHHHHHHHHHHhCC---CcC--CCCCcCCCccccHHHHHHHHHhhcCC
Confidence              99999999999999999998   889  77   999999999999999999987

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=3.2e-17  Score=126.82  Aligned_cols=84  Identities=30%  Similarity=0.550  Sum_probs=48.8

Q ss_pred             CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccC
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFA  275 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs  275 (290)
                      ++|.|.+|++.|.....|..|+++ |.++.+        |.|.+|++.|..+..|..|+++|.++++|+|  ..|++.|.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~   84 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERT-HTDERP--------YTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFC   84 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHH-HCCSCC--------CBCSSSCCBCSCHHHHHHHGGGSCCCCTTSC--SSSCCCCS
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH-cCCCCC--------cCCCCccchhCCHHHHHHHHHHhCCCCCeEC--CCcCCccc
Confidence            455666666666666666666655 333222        4566666666666666666666666666666  55666666


Q ss_pred             ChHHHHHHhhhcCCC
Q psy16225        276 RSENLKIHKRTHTEV  290 (290)
Q Consensus       276 ~~s~L~~H~rtHTGE  290 (290)
                      +...|.+|+++|++|
T Consensus        85 ~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           85 QSRTLAVHKTLHMQT   99 (106)
T ss_dssp             SHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHhCCC
Confidence            666666666666553

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=1.4e-17  Score=122.40  Aligned_cols=82  Identities=39%  Similarity=0.672  Sum_probs=75.3

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCC
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFAR  276 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~  276 (290)
                      +|.|.+|++.|.....|..|+++ |.++.+        +.|..|++.|..+..|..|+++|.++++|+|  ..|++.|.+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~   69 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI-HSDTRP--------YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQ   69 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHTCCC--------EECSSSCCEESSHHHHHHHHHHHHTCCCEEC--TTTSCEESS
T ss_pred             CccCCCCcccccCchhHHHHHHH-cCCCCC--------eeCCcCChhhCCHHHHHHHHHHhcCCCCCcC--CCcchhhCC
Confidence            57899999999999999999998 545444        7999999999999999999999999999999  889999999


Q ss_pred             hHHHHHHhhhcCC
Q psy16225        277 SENLKIHKRTHTE  289 (290)
Q Consensus       277 ~s~L~~H~rtHTG  289 (290)
                      ..+|.+|+++|+|
T Consensus        70 ~~~l~~H~~~H~g   82 (82)
T 2kmk_A           70 SSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             hHHHHHHHHhhCC
Confidence            9999999999986

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.68  E-value=1.8e-17  Score=124.20  Aligned_cols=85  Identities=35%  Similarity=0.666  Sum_probs=77.0

Q ss_pred             CCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCC
Q psy16225        195 DTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGK  272 (290)
Q Consensus       195 e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgK  272 (290)
                      +++|.|.  .|++.|.....|..|+++ |.+..+        +.|..|++.|..+..|..|+++|.++++|.|  ..|++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~   70 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQKP--------FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGR   70 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHH-HHCCCC--------EECTTTCCEESCHHHHHHHHHHHHCCCCEEC--TTTCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHH-hCCCCC--------ccCCCCCcccCCHHHHHHHHHHcCCCCCccC--CCCCc
Confidence            5789998  699999999999999998 545444        7999999999999999999999999999999  88999


Q ss_pred             ccCChHHHHHHhhhcCCC
Q psy16225        273 VFARSENLKIHKRTHTEV  290 (290)
Q Consensus       273 sFs~~s~L~~H~rtHTGE  290 (290)
                      .|.+...|.+|+++|+||
T Consensus        71 ~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           71 KFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             EESSHHHHHHHHGGGGC-
T ss_pred             hhCCHHHHHHHHHHhccc
Confidence            999999999999999986

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=131.07  Aligned_cols=96  Identities=71%  Similarity=1.366  Sum_probs=87.3

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCcc
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVF  274 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsF  274 (290)
                      +..|.|..|++.|.+...|.+|++.+|.+..+.....|.|+.|.+|++.|..+..|..|+++|.++++|.|.++.|++.|
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  102 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF  102 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence            37899999999999999999999987887776667788899999999999999999999999999999999333399999


Q ss_pred             CChHHHHHHhhhcCCC
Q psy16225        275 ARSENLKIHKRTHTEV  290 (290)
Q Consensus       275 s~~s~L~~H~rtHTGE  290 (290)
                      .+...|.+|+++|+++
T Consensus       103 ~~~~~L~~H~~~h~~~  118 (155)
T 2rpc_A          103 ARSENLKIHKRTHTGE  118 (155)
T ss_dssp             SCHHHHHHHHTTTCSS
T ss_pred             CCHHHHHHHHHhhCCC
Confidence            9999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.1e-16  Score=121.12  Aligned_cols=86  Identities=33%  Similarity=0.637  Sum_probs=76.2

Q ss_pred             CCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCC--CcccCCCCCCC
Q psy16225        194 IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE--KPFPCPFPTCG  271 (290)
Q Consensus       194 ~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtge--Kpf~C~~~~Cg  271 (290)
                      ++++|.|.+|++.|.+...|.+|+++ |.++.+        |.|.+|++.|..+..|..|+++|.++  ++|+|  ..|+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C--~~C~   72 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLS-HSGEKP--------YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCG   72 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHH-SCSSCS--------EECSSSCCEESCHHHHHHHHHHHCCCCCSSBCC--SSSC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHh-cCCCCC--------CcCCCCCCccCCHHHHHHHHHHhcCCCCCceEC--CCcc
Confidence            56889999999999999999999998 555444        78999999999999999999999987  89999  7899


Q ss_pred             CccCChHHHHHHhh-hcCCC
Q psy16225        272 KVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       272 KsFs~~s~L~~H~r-tHTGE  290 (290)
                      +.|.+...|.+|++ +|+|+
T Consensus        73 ~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           73 KGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CCBSSHHHHHHHHHHTSCCC
T ss_pred             chhCCHHHHHHHHHHhcCCC
Confidence            99999999999985 88875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.5e-16  Score=122.77  Aligned_cols=85  Identities=34%  Similarity=0.611  Sum_probs=77.9

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG  271 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~Cg  271 (290)
                      |.++++|.| .|++.|.....|.+|+++ |.++.+        |.|.+|++.|..+..|..|+++|.++++|+|  +.|+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~   72 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM-HLGLRP--------YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC--NICA   72 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHH-HSCCCS--------EECTTTSCEESSSHHHHHHHTTTCCCCCEEC--SSSC
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHH-cCCCcC--------ccCCCCCcccCCHHHHHHHHHHcCCCCCeeC--CCCc
Confidence            667899999 899999999999999998 545444        7999999999999999999999999999999  7899


Q ss_pred             CccCChHHHHHHhhhcC
Q psy16225        272 KVFARSENLKIHKRTHT  288 (290)
Q Consensus       272 KsFs~~s~L~~H~rtHT  288 (290)
                      +.|.+...|.+|+++|.
T Consensus        73 ~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           73 KRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             CEESCHHHHHHHHHHHH
T ss_pred             chhcCHHHHHHHHHHcc
Confidence            99999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.63  E-value=8.4e-16  Score=118.77  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=82.8

Q ss_pred             CCCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCC
Q psy16225        164 STNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRP  243 (290)
Q Consensus       164 s~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cgks  243 (290)
                      .....|.|..|++.|.....|..|+.+ |..+++|.|.+|++.|.....|.+|+++ |.++.+        |.|.+|++.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~   82 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKP--------FKCQECGKG   82 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHH-HCCSCCCBCSSSCCBCSCHHHHHHHGGG-SCCCCT--------TSCSSSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHH-cCCCCCcCCCCccchhCCHHHHHHHHHH-hCCCCC--------eECCCcCCc
Confidence            344579999999999999999999887 6778999999999999999999999998 555554        799999999


Q ss_pred             CCcchhhhchhhhcCCCCcccC
Q psy16225        244 FKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       244 F~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |..+..|..|+++|.++++|.+
T Consensus        83 f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           83 FCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSSHHHHHHHHHHTTSCCCCCC
T ss_pred             ccCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999876

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.8e-16  Score=122.28  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG  271 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~Cg  271 (290)
                      |.++++|.|.+|++.|.....|..|+++ |.  .+        |.|.+|++.|..+..|..|++ |+++++|+|  ..|+
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~-H~--~~--------~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C--~~C~   76 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERL-CR--NA--------AVCPYCSLRFFSPELKQEHES-KCEYKKLTC--LECM   76 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHH-HH--HS--------BCCTTTCCCBSSHHHHHHHHH-HCSTGGGEE--GGGT
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHH-CC--CC--------ccCCCCCCccCCHHHHHHHHH-cCCCCCccC--cccc
Confidence            4455667777777777777777777766 31  11        567777777777777777764 777777777  5677


Q ss_pred             CccCChHHHHHHhh-hcCCC
Q psy16225        272 KVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       272 KsFs~~s~L~~H~r-tHTGE  290 (290)
                      +.|.+...|.+|++ +|++|
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~   96 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQN   96 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCC
T ss_pred             chhCCHHHHHHHHHHHcCCC
Confidence            77777777777775 66654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.59  E-value=1.7e-15  Score=115.46  Aligned_cols=84  Identities=30%  Similarity=0.582  Sum_probs=75.1

Q ss_pred             CCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        195 DTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       195 e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      ++.|.|..  |++.|.....|.+|+++ |.++.+        +.|.  .|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C   81 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKP--------YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVC   81 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHH-HSCCCC--------EECCSSSCCCEESSHHHHHHHHHHHTSCCSCBC--SSS
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHH-hCCCCC--------eeCCCCCCCCccCCHHHHHHHHHHhCCCCCeEC--CCC
Confidence            36788986  99999999999999998 555444        7885  699999999999999999999999999  889


Q ss_pred             CCccCChHHHHHHhhhcCC
Q psy16225        271 GKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       271 gKsFs~~s~L~~H~rtHTG  289 (290)
                      ++.|.+...|.+|+++|++
T Consensus        82 ~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHHHCC
T ss_pred             cCccCCHHHHHHHHHHhCC
Confidence            9999999999999999986

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.58  E-value=6.3e-16  Score=110.57  Aligned_cols=54  Identities=30%  Similarity=0.599  Sum_probs=51.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.+|++.|..+..|..|+++|+++|||+|  .+||+.|.+.++|.+|+++|+||
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C--~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHTCCCEEC--TTTCCEESSHHHHHHHGGGGSCC
T ss_pred             ccCCCCCCEeCCHHHHHHHHHHhCCCcCeEC--CCCCCCcCCHHHHHHHhCccCCC
Confidence            8999999999999999999999999999999  88999999999999999999997

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.58  E-value=1.3e-15  Score=119.42  Aligned_cols=87  Identities=36%  Similarity=0.557  Sum_probs=79.1

Q ss_pred             CCCCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCC
Q psy16225        193 WIDTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFP  268 (290)
Q Consensus       193 ~~e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~  268 (290)
                      .++++|.|..  |++.|.+...|..|+++ |.++.+        +.|.  .|++.|..+..|..|+++|.++++|.|  +
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKP--------YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--K   70 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHH-HHTTCC--------EECCSTTCCCEESSHHHHHHHHHHHHCCCCEEC--T
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHh-hCCCCC--------ccCCCCCCcCccCCHHHHHHHHHHcCCCCCccC--C
Confidence            3568999997  99999999999999998 555444        7888  799999999999999999999999999  8


Q ss_pred             CCCCccCChHHHHHHhhhcCCC
Q psy16225        269 TCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       269 ~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|++.|.+...|.+|+++|+++
T Consensus        71 ~C~~~f~~~~~l~~H~~~h~~~   92 (119)
T 2jp9_A           71 TCQRKFSRSDHLKTHTRTHTGE   92 (119)
T ss_dssp             TTCCEESCHHHHHHHHHHHHTC
T ss_pred             ccCchhCCHHHHHHHHHHhcCC
Confidence            8999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=4.1e-15  Score=117.21  Aligned_cols=87  Identities=26%  Similarity=0.412  Sum_probs=78.4

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhh---cCCCCcccCCCCC
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRV---HTGEKPFPCPFPT  269 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rv---HtgeKpf~C~~~~  269 (290)
                      .++++|.|.+|++.|.+...|..|+++ |.++.+        +.|+.|++.|..+..|..|++.   +.++++|.|  +.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C--~~   71 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKP--------FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC--SV   71 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHH-HSSCCS--------CBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEEC--SS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHh-CCCCCC--------eECCCCCchhcCHHHHHHHHhhhhcCCCCCCeEC--CC
Confidence            356899999999999999999999998 444444        7999999999999999999984   678999999  88


Q ss_pred             CCCccCChHHHHHHhhhcCCC
Q psy16225        270 CGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       270 CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |++.|.....|.+|+++|++|
T Consensus        72 C~~~f~~~~~l~~H~~~h~~~   92 (124)
T 2dlq_A           72 CQETFRRRMELRLHMVSHTGE   92 (124)
T ss_dssp             SCCEESSHHHHHHHHHHHSSS
T ss_pred             CCCccCCHHHHHHHHHHcCCC
Confidence            999999999999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.57  E-value=2e-15  Score=112.68  Aligned_cols=83  Identities=31%  Similarity=0.658  Sum_probs=75.5

Q ss_pred             CCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        195 DTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       195 e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      ...|.|+.  |++.|.....|..|+++ |.++.+        +.|.  .|++.|.....|..|+++|.++++|.|  +.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C   71 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKP--------YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKC   71 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTT-SCSSCC--------EECCSTTTCCEESSHHHHHHHHHHHHCCCCEEC--SSS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHh-cCCCCC--------cCCCCCCCCCccCCHHHHHHHHHHcCCCCCccC--CCC
Confidence            36789999  99999999999999998 555544        7886  699999999999999999999999999  889


Q ss_pred             CCccCChHHHHHHhhhcC
Q psy16225        271 GKVFARSENLKIHKRTHT  288 (290)
Q Consensus       271 gKsFs~~s~L~~H~rtHT  288 (290)
                      ++.|.....|..|+++|+
T Consensus        72 ~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           72 DRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SCEESSHHHHHHHGGGGC
T ss_pred             CcccCCHHHHHHHHHhhC
Confidence            999999999999999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.4e-15  Score=113.12  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             CCCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCC
Q psy16225        164 STNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRP  243 (290)
Q Consensus       164 s~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cgks  243 (290)
                      .....|.|..|++.|.....|.+|+++ |..+++|.|.+|++.|.....|.+|+++ |.++++        |.|.+|++.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~   73 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERP--------FKCQICPYA   73 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGG-CCCCCSEECSSSCCEESSHHHHHHHHHH-SCCCCC--------EECSSSSCE
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHh-cCCCCCEeCCCCCCccCCHHHHHHHHHH-hCCCCC--------ccCCCCCCc
Confidence            345679999999999999999999886 7778999999999999999999999998 555544        799999999


Q ss_pred             CCcchhhhchhhhcCCCCcc
Q psy16225        244 FKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       244 F~sks~L~~H~rvHtgeKpf  263 (290)
                      |..+..|..|+++|++++..
T Consensus        74 f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           74 SRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             ESSHHHHHHHHTTCCSCCCC
T ss_pred             cCCHHHHHHHHHHhcCCCCC
Confidence            99999999999999998753

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.56  E-value=3.4e-15  Score=118.32  Aligned_cols=86  Identities=40%  Similarity=0.638  Sum_probs=76.3

Q ss_pred             CCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCC
Q psy16225        195 DTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGK  272 (290)
Q Consensus       195 e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgK  272 (290)
                      +++|.|.  .|++.|.+...|..|+++ | +..+        +.|..|++.|..+..|..|+++|.++++|.|.+..|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h-~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   72 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHT-H-GPRV--------HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK   72 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGG-G-SCCC--------EECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCC
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHH-c-CCCC--------eECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcC
Confidence            4789999  899999999999999998 5 4433        79999999999999999999999999999994335999


Q ss_pred             ccCChHHHHHHhhhcCCC
Q psy16225        273 VFARSENLKIHKRTHTEV  290 (290)
Q Consensus       273 sFs~~s~L~~H~rtHTGE  290 (290)
                      .|.....|.+|+++|+++
T Consensus        73 ~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           73 RFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             EESCHHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=9e-15  Score=113.63  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       165 ~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      ....|.|..|++.|.....|..|++++   +++|.|++|++.|.....|.+|++  |.++++        |.|.+|++.|
T Consensus        13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H---~~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~--------~~C~~C~~~f   79 (107)
T 1wjp_A           13 NKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHES--KCEYKK--------LTCLECMRTF   79 (107)
T ss_dssp             CCCCCBCTTTCCBCSSHHHHHHHHHHH---HHSBCCTTTCCCBSSHHHHHHHHH--HCSTGG--------GEEGGGTEEC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHC---CCCccCCCCCCccCCHHHHHHHHH--cCCCCC--------ccCccccchh
Confidence            445799999999999999999999884   379999999999999999999994  666655        8999999999


Q ss_pred             Ccchhhhchhh-hcCCCCcccCC
Q psy16225        245 KAKYKLVNHIR-VHTGEKPFPCP  266 (290)
Q Consensus       245 ~sks~L~~H~r-vHtgeKpf~C~  266 (290)
                      ..+..|..|++ +|.++++|.|.
T Consensus        80 ~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           80 KSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             SSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999997 99999999883

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.50  E-value=2.5e-14  Score=108.13  Aligned_cols=89  Identities=20%  Similarity=0.297  Sum_probs=77.7

Q ss_pred             CCCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCC-CcccccCccccCCCCCCC
Q psy16225        164 STNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGG-PECTTHACFWDGCPRNGR  242 (290)
Q Consensus       164 s~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~-~~~~~~~C~~~~C~~Cgk  242 (290)
                      +....|.|..|++.|.....|.+|+.+ |..+++|.|.+|++.|.+...|.+|+++++... ++        |.|.+|++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~--------~~C~~C~~   73 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP--------YICQSCGK   73 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHH-SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS--------BCCSSSCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHh-cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc--------eECCCccc
Confidence            345679999999999999999999887 778899999999999999999999999955431 33        89999999


Q ss_pred             CCCcchhhhchhh-hcCCCC
Q psy16225        243 PFKAKYKLVNHIR-VHTGEK  261 (290)
Q Consensus       243 sF~sks~L~~H~r-vHtgeK  261 (290)
                      .|..+..|..|++ +|.++.
T Consensus        74 ~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCCCS
T ss_pred             hhCCHHHHHHHHHHhcCCCC
Confidence            9999999999986 888753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.50  E-value=6.6e-15  Score=108.01  Aligned_cols=81  Identities=25%  Similarity=0.408  Sum_probs=73.2

Q ss_pred             ccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcch
Q psy16225        169 QSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKY  248 (290)
Q Consensus       169 ~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks  248 (290)
                      |.|..|++.|.....|.+|+.+ |.++++|.|..|++.|.....|.+|+++ |.++.+        +.|..|++.|..+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP--------HKCQVCGKAFSQSS   71 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH-HHTCCCEECSSSCCEESSHHHHHHHHHH-HHTCCC--------EECTTTSCEESSHH
T ss_pred             ccCCCCcccccCchhHHHHHHH-cCCCCCeeCCcCChhhCCHHHHHHHHHH-hcCCCC--------CcCCCcchhhCChH
Confidence            7899999999999999999987 6678999999999999999999999998 445444        79999999999999


Q ss_pred             hhhchhhhcCC
Q psy16225        249 KLVNHIRVHTG  259 (290)
Q Consensus       249 ~L~~H~rvHtg  259 (290)
                      .|..|+++|+|
T Consensus        72 ~l~~H~~~H~g   82 (82)
T 2kmk_A           72 NLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhhCC
Confidence            99999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.49  E-value=1e-14  Score=109.03  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             Cccccc--ccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        167 AMQSAG--THGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       167 ~~~~C~--~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      ..|.|.  .|++.|.....|.+|+.+ |..+++|.|..|++.|.+...|..|+++ |.++.+        |.|..|++.|
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f   72 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP--------FACDICGRKF   72 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHHHHHHH-HHCCCC--------EECTTTCCEE
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHH-hCCCCCccCCCCCcccCCHHHHHHHHHH-cCCCCC--------ccCCCCCchh
Confidence            368897  799999999999999887 6678999999999999999999999998 555544        7999999999


Q ss_pred             CcchhhhchhhhcCCCC
Q psy16225        245 KAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       245 ~sks~L~~H~rvHtgeK  261 (290)
                      ..+..|..|+++|++++
T Consensus        73 ~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           73 ARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SSHHHHHHHHGGGGC--
T ss_pred             CCHHHHHHHHHHhcccC
Confidence            99999999999999886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.46  E-value=3e-14  Score=104.93  Aligned_cols=78  Identities=24%  Similarity=0.404  Sum_probs=70.0

Q ss_pred             CCcC--CccCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCCCCCcchhhhchhhhcCCCCcccCCCCC---
Q psy16225        197 PGPR--KTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGRPFKAKYKLVNHIRVHTGEKPFPCPFPT---  269 (290)
Q Consensus       197 ~~~C--~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--CgksF~sks~L~~H~rvHtgeKpf~C~~~~---  269 (290)
                      +|.|  +.|++.|.....|.+|+++ |.++++        +.|+.  |++.|..+..|..|+++|++   |.|  ..   
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C--~~~~~   66 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS-HTQQLP--------YECPHEGCDKRFSLPSRLKRHEKVHAG---YPC--KKDDS   66 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH-HHTTCC--------EECCSTTCCCEESSHHHHHHHHHHHHS---EEC--CSCSS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH-hCCCCC--------eeCCCCCCcCccCCHHHHHHHHHHhCC---CCC--CCCCC
Confidence            5789  8999999999999999998 555554        78988  99999999999999999998   999  77   


Q ss_pred             CCCccCChHHHHHHhhhcC
Q psy16225        270 CGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       270 CgKsFs~~s~L~~H~rtHT  288 (290)
                      |++.|.....|.+|+++|+
T Consensus        67 C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           67 CSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCCEESSHHHHHHHHHHCC
T ss_pred             CCCccCCHHHHHHHHHhcC
Confidence            9999999999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.45  E-value=3.2e-14  Score=101.61  Aligned_cols=58  Identities=24%  Similarity=0.543  Sum_probs=52.9

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |+||.|++|++.|.....|.+|+++ |.++++        |.|.+|++.|..+..|.+|+++|+||+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp--------~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRP--------RSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HHTCCC--------EECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH-hCCCcC--------eECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999998 777766        899999999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=7e-14  Score=102.26  Aligned_cols=73  Identities=23%  Similarity=0.485  Sum_probs=64.4

Q ss_pred             CCCCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCCCCCcchhhhchhhhcCCCCcccCCCC
Q psy16225        193 WIDTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGRPFKAKYKLVNHIRVHTGEKPFPCPFP  268 (290)
Q Consensus       193 ~~e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--CgksF~sks~L~~H~rvHtgeKpf~C~~~  268 (290)
                      .++++|.|+.  |++.|.+...|.+|++..|.++++        |.|++  |++.|..+..|..|+++|+++++|+|  .
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~--------~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~   72 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS--------FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC--E   72 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC--------EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC--C
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC--------eECCCCCCcCccCCHHHHHHHHHHhCCCCCeeC--C
Confidence            3567888887  999999999999999944766655        78998  99999999999999999999999999  8


Q ss_pred             CCCCccC
Q psy16225        269 TCGKVFA  275 (290)
Q Consensus       269 ~CgKsFs  275 (290)
                      .|++.|.
T Consensus        73 ~C~k~F~   79 (79)
T 2dlk_A           73 FSGPSSG   79 (79)
T ss_dssp             SSSCCCC
T ss_pred             CCCCCCC
Confidence            8999984

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.2e-14  Score=103.80  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             hhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCC---CcccccCccccCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        184 PIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGG---PECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       184 l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~---~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      +.+|+++ |..+++|.|.+|++.|.....|.+|+++++...   .+        |.|.+|++.|..+..|..|+++|.++
T Consensus         3 ~~~H~~~-H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~--------~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A            3 SGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--------FVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             TTCCSTT-CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC--------EECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             cccccce-ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc--------eECCCCCChhCCHHHHHHHHHHccCC
Confidence            4556665 778899999999999999999999998866553   33        79999999999999999999999999


Q ss_pred             CcccCCCCCCCCcc
Q psy16225        261 KPFPCPFPTCGKVF  274 (290)
Q Consensus       261 Kpf~C~~~~CgKsF  274 (290)
                      +++.|  ..|+..|
T Consensus        74 ~~~~~--~~~~~~~   85 (86)
T 1x6h_A           74 DGVEG--ENSGPSS   85 (86)
T ss_dssp             CSCCC--CCCCCCC
T ss_pred             CCccc--CCCCCCC
Confidence            99999  8899876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=8.9e-14  Score=105.21  Aligned_cols=77  Identities=62%  Similarity=1.281  Sum_probs=67.9

Q ss_pred             HHhcCCC---CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        189 MTCLWID---TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       189 ~~~h~~e---~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +.|+|.+   ..++|..|++.|.....|.+|++++|.++++.....|.|+.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        14 ~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           14 LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             CCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             ceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            4456654   4578999999999999999999986777776677788899999999999999999999999999999999

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-13  Score=108.17  Aligned_cols=93  Identities=9%  Similarity=0.012  Sum_probs=77.6

Q ss_pred             CCCCcccccccCccccccCchhhHHHHh-cCCCCC-CcCCccCccc--CChHHHHHhhhhcccCCCcccccCccccCCCC
Q psy16225        164 STNAMQSAGTHGAFFRYMRQPIKQDMTC-LWIDTP-GPRKTCGKMF--NNMHEIVTHLTVEHVGGPECTTHACFWDGCPR  239 (290)
Q Consensus       164 s~~~~~~C~~Cg~~F~~~~~l~~H~~~~-h~~e~~-~~C~~CgKsF--~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~  239 (290)
                      .....|.|..|++.|.....|..|+++. |..+++ +.|.+|++.|  .....|.+|+++ |.++++        |.|++
T Consensus        15 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~~~~--------~~C~~   85 (115)
T 2dmi_A           15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDAQKV--------LKCMY   85 (115)
T ss_dssp             CCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCCCSS--------CBCSS
T ss_pred             CCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-cCCCcc--------eECCC
Confidence            3456799999999999999999998861 334444 5599999999  899999999998 666655        89999


Q ss_pred             CCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        240 NGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       240 CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |++.|..+..|..|+++|...+...+
T Consensus        86 C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCccCCHHHHHHHHHHhCCcccCCC
Confidence            99999999999999999877666555

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.41  E-value=9.5e-15  Score=109.77  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=71.5

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCcc
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVF  274 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsF  274 (290)
                      +++|.|++|++.|.....|.+|+++ |.++.+        |.|+.|++.|..+..|..|+++|.+ ++|.|  +.|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c--~~C~~~f   68 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP--------FACDICGRKFARSDERKRHRDIQHI-LPILE--DKVEELL   68 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH-HHCCCC--------EECTTTCCEESSHHHHHHHHHHHTH-HHHHH--HHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH-cCCCCC--------ccCCCCCCccCCHHHHHHHHHHhCC-CcchH--HHHHHHH
Confidence            4789999999999999999999998 555554        7999999999999999999998884 78999  8899999


Q ss_pred             CChHHHHHHhhhc
Q psy16225        275 ARSENLKIHKRTH  287 (290)
Q Consensus       275 s~~s~L~~H~rtH  287 (290)
                      .....|..|++.+
T Consensus        69 ~~~~~L~~H~~~~   81 (88)
T 1llm_C           69 SKNYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHH
Confidence            9999999998754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.8e-13  Score=106.41  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             CCCcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCC
Q psy16225        165 TNAMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPF  244 (290)
Q Consensus       165 ~~~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF  244 (290)
                      ....|.| .|++.|.....|.+|++. |..+++|.|.+|++.|.....|.+|+++ |.++.+        |.|.+|++.|
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f   75 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKP--------YECNICAKRF   75 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHH-HSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCC--------EECSSSCCEE
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHH-cCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCC--------eeCCCCcchh
Confidence            4457999 999999999999999987 6678999999999999999999999998 555544        7999999999


Q ss_pred             CcchhhhchhhhcCC
Q psy16225        245 KAKYKLVNHIRVHTG  259 (290)
Q Consensus       245 ~sks~L~~H~rvHtg  259 (290)
                      ..+..|..|+++|..
T Consensus        76 ~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           76 MWRDSFHRHVTSCTK   90 (110)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHccc
Confidence            999999999998764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.8e-13  Score=98.43  Aligned_cols=64  Identities=28%  Similarity=0.481  Sum_probs=53.3

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      ..+++|.|++|++.|.....|.+|+++ |.++++        |.|++|++.|..+..|..|+++|++++||+|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKP--------YKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTT-TCCSCS--------EECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHH-cCCCcC--------eeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            355788999999999999999999887 555544        7888899999999999999999998888887

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-13  Score=106.57  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             ccccCchhhHHHHhcCCCCCCcCCccCcccC-ChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhh
Q psy16225        178 FRYMRQPIKQDMTCLWIDTPGPRKTCGKMFN-NMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRV  256 (290)
Q Consensus       178 F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~-~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rv  256 (290)
                      +.....+..|+++ |..+++|.|++|++.|. ....|++|+++++..+++        |.|.+|++.|..+..|..|+++
T Consensus         6 ~~~~~~~~~h~~~-h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~--------~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            6 SGPGGPEEQWQRA-IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA--------LKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCCCCSCSHHHHT-TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH--------HSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHH-hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC--------EECCCCCCccCCHHHHHHHHHH
Confidence            3444555666655 67778888888888888 888888888874431333        7888888888888888888888


Q ss_pred             cCCCCcccC
Q psy16225        257 HTGEKPFPC  265 (290)
Q Consensus       257 HtgeKpf~C  265 (290)
                      |++++++..
T Consensus        77 h~~~kp~~~   85 (98)
T 2gqj_A           77 EHSAKPSDA   85 (98)
T ss_dssp             HSCSCSSCC
T ss_pred             HcCCCCCCC
Confidence            888887654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.36  E-value=6e-13  Score=101.15  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=75.0

Q ss_pred             CCCcccccc--cCccccccCchhhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCC
Q psy16225        165 TNAMQSAGT--HGAFFRYMRQPIKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRN  240 (290)
Q Consensus       165 ~~~~~~C~~--Cg~~F~~~~~l~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~C  240 (290)
                      ....|.|..  |++.|.....|.+|+++ |..+++|.|.  .|++.|.....|.+|+++ |.++.+        |.|.+|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C   81 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP--------FQCGVC   81 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHH-HSCCCCEECCSSSCCCEESSHHHHHHHHHH-HTSCCS--------CBCSSS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHH-hCCCCCeeCCCCCCCCccCCHHHHHHHHHH-hCCCCC--------eECCCC
Confidence            345788986  99999999999999987 6778999996  699999999999999998 555544        899999


Q ss_pred             CCCCCcchhhhchhhhcCC
Q psy16225        241 GRPFKAKYKLVNHIRVHTG  259 (290)
Q Consensus       241 gksF~sks~L~~H~rvHtg  259 (290)
                      ++.|..+..|..|+++|++
T Consensus        82 ~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHHHCC
T ss_pred             cCccCCHHHHHHHHHHhCC
Confidence            9999999999999999874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=4.4e-13  Score=103.77  Aligned_cols=52  Identities=25%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             cCCCCCCCCC-CcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHH-hhhcCC
Q psy16225        235 DGCPRNGRPF-KAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF-~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H-~rtHTG  289 (290)
                      |.|++|++.| ..+..|..|+++| ++++|.|  .+|+|.|.+...|++| +++|++
T Consensus        35 ~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C--~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTC--HHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             EECTTTCSCEESSHHHHHHHHHHH-CCCCCCC--SSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             cCCCCCCCCcccCHHHHHHHHHHH-CCCCeEC--CCCCCeeCCHHHHHHHhHHhcCC
Confidence            4555555555 5555555555555 5555555  4555555555555555 555554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.34  E-value=6e-14  Score=112.34  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=68.7

Q ss_pred             CCCcCCccCcccC------ChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCC
Q psy16225        196 TPGPRKTCGKMFN------NMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPT  269 (290)
Q Consensus       196 ~~~~C~~CgKsF~------~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~  269 (290)
                      +.+.|++|.+.|.      ....|..|++  |.++++        |.|++|++.|..+..|..|+++|  +++|+|  +.
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~~--h~~~~~--------~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C--~~  105 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKAISQ--------FVCPLCLMPFSSSVSLKQHIRYT--EHTKVC--PV  105 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHHH--HHHHCS--------EECTTTCCEESSHHHHHHHHHHT--CCCCBC--TT
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHHH--hCCCCC--------eECCCCCcccCCHhHHHHHHHHC--CCCCCC--CC
Confidence            5567888776665      6677777774  444444        89999999999999999999999  899999  88


Q ss_pred             CCCccCChHHHHHHhhhcCCC
Q psy16225        270 CGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       270 CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |++.|.+..+|.+|+++|+|+
T Consensus       106 C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          106 CKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCcccCCHHHHHHHHHHHCCc
Confidence            999999999999999999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.34  E-value=4.4e-13  Score=99.76  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             CCcccccc--cCccccccCchhhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCC
Q psy16225        166 NAMQSAGT--HGAFFRYMRQPIKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNG  241 (290)
Q Consensus       166 ~~~~~C~~--Cg~~F~~~~~l~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cg  241 (290)
                      ...|.|..  |++.|.....|.+|+.+ |.++++|.|.  .|++.|.....|.+|+++ |.++.+        |.|++|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~   72 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP--------FQCQKCD   72 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTT-SCSSCCEECCSTTTCCEESSHHHHHHHHHH-HHCCCC--------EECSSSS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHh-cCCCCCcCCCCCCCCCccCCHHHHHHHHHH-cCCCCC--------ccCCCCC
Confidence            34688998  99999999999999887 7778999997  699999999999999998 555554        7999999


Q ss_pred             CCCCcchhhhchhhhcC
Q psy16225        242 RPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       242 ksF~sks~L~~H~rvHt  258 (290)
                      +.|..+..|..|+++|.
T Consensus        73 ~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           73 RAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEESSHHHHHHHGGGGC
T ss_pred             cccCCHHHHHHHHHhhC
Confidence            99999999999999884

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=5.3e-13  Score=96.56  Aligned_cols=54  Identities=46%  Similarity=0.841  Sum_probs=47.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.+|++.|..+..|..|+++|.++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHHGGGCSCCEEC--SSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCCccCCHHHHHHHHHhcCCCCCeEC--CCCCcccCCHHHHHHHHHhcCCC
Confidence            7888888888888888889888888999999  77999999999999999998875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.32  E-value=1.4e-12  Score=94.68  Aligned_cols=54  Identities=44%  Similarity=0.773  Sum_probs=40.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|..|++.|..+..|..|+++|+++++|+|  ..|++.|.+...|.+|+++|+||
T Consensus        18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             BCCTTSSCCBSCHHHHHHHHHHHCCCCSEEC--TTTCCEESCHHHHHHHHHHHCCS
T ss_pred             eECCCCCceeCCHHHHHHHHHHcCCCCCEEC--CCCCchhCCHHHHHHHHHhcCCC
Confidence            6777777777777777777777777777777  66777777777777777777765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=6.7e-13  Score=104.52  Aligned_cols=67  Identities=21%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcc---cCCCcccccCccccCCCCCCCCCCcchhhhch-hhhcCCCCcccCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEH---VGGPECTTHACFWDGCPRNGRPFKAKYKLVNH-IRVHTGEKPFPCP  266 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H---~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H-~rvHtgeKpf~C~  266 (290)
                      ..++++|.|++|++.|.....|.+|++..|   .++++        |.|.+|++.|..+..|..| +++|++++||.|.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp--------f~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~   83 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS--------YVCVECNFLTKRYDALSEHNLKYHPGEENFKLT   83 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC--------EEETTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC--------cCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            346789999999999999999999997546   33444        8999999999999999999 8999999999993

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.30  E-value=1.3e-12  Score=99.58  Aligned_cols=54  Identities=30%  Similarity=0.540  Sum_probs=51.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHh-hhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~-rtHTGE  290 (290)
                      +.|++|++.|..+..|.+|+++|++++||+|  +.|+|+|.+..+|.+|+ ++|++|
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLLHAAQVFPC--KYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTTSCSSSEEC--TTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             EECCCCCCCcCcHHHHhhhhhhccCCCccCC--CCCCCEeCCHHHHHHhCcccCcCC
Confidence            7899999999999999999999999999999  88999999999999996 679886

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.30  E-value=1.7e-12  Score=94.17  Aligned_cols=63  Identities=32%  Similarity=0.545  Sum_probs=54.7

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcc
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf  263 (290)
                      +.++++|.|+.|++.|.....|.+|+++ |.++++        |.|.+|++.|..+..|.+|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKP--------YRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHH-HCCCCS--------EECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHH-cCCCCC--------EECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4456889999999999999999999998 555544        78999999999999999999999999886

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.29  E-value=2e-12  Score=88.66  Aligned_cols=54  Identities=30%  Similarity=0.506  Sum_probs=49.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|..|++.|.....|..|+++|+++++|.|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEEC--SSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccC--CCCCchhcCHHHHHHHHHHhccc
Confidence            6899999999999999999999999999999  78999999999999999999875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=100.49  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             ccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCC-cchhhhchhhhcCC-CCcccCCCCCCCCccCChHHHHHH
Q psy16225        206 MFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFK-AKYKLVNHIRVHTG-EKPFPCPFPTCGKVFARSENLKIH  283 (290)
Q Consensus       206 sF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~-sks~L~~H~rvHtg-eKpf~C~~~~CgKsFs~~s~L~~H  283 (290)
                      .+.....+..|+++ |.++++        |.|.+|++.|. .+..|..|+++|++ +++|+|  ..|++.|.+...|++|
T Consensus         5 s~~~~~~~~~h~~~-h~~~~~--------~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C--~~C~k~F~~~~~L~~H   73 (98)
T 2gqj_A            5 SSGPGGPEEQWQRA-IHERGE--------AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKC--QHCRKQFKSKAGLNYH   73 (98)
T ss_dssp             CCCCCCSCSHHHHT-TTTTSC--------CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSC--SSSCCCCSCHHHHHHH
T ss_pred             CCCCCCcHHHHHHH-hccCCC--------cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEEC--CCCCCccCCHHHHHHH
Confidence            45555667788888 666555        79999999999 99999999999998 999999  7899999999999999


Q ss_pred             hhhcCCC
Q psy16225        284 KRTHTEV  290 (290)
Q Consensus       284 ~rtHTGE  290 (290)
                      +++|++|
T Consensus        74 ~~~h~~~   80 (98)
T 2gqj_A           74 TMAEHSA   80 (98)
T ss_dssp             HHHHSCS
T ss_pred             HHHHcCC
Confidence            9999875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=2.1e-12  Score=92.77  Aligned_cols=53  Identities=25%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|++.|.+...|.+|+++|++
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSCSEEC--SSSSCEESSHHHHHHHHHHHHS
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCEeC--CCCCCccCCHHHHHHHHHHHhC
Confidence            4555555555555555555555555555555  4455555555555555555544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.8e-12  Score=92.48  Aligned_cols=54  Identities=41%  Similarity=0.757  Sum_probs=52.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|++.|.....|.+|+++|+||
T Consensus        19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCSCSEEC--SSSCCEESSHHHHHHHGGGSCCC
T ss_pred             EECCCCCcccCCHHHHHHHHHHcCCCcCeeC--CCCCCccCCHHHHHHHHHHhCCC
Confidence            8999999999999999999999999999999  88999999999999999999986

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.24  E-value=3.9e-12  Score=87.21  Aligned_cols=53  Identities=36%  Similarity=0.714  Sum_probs=49.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|.+|++.|..+..|..|+++|+++++|.|  +.|++.|.+...|.+|+++|.+
T Consensus         5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             CBCTTTCCBCSCHHHHHHHHHHHHCCCCEEC--SSSSCEESSHHHHHHHHHHHC-
T ss_pred             ccCCCCcchhCChHHHHHHHHHcCCCCCcCC--CCCcchhCCHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999  7899999999999999999874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=6.2e-12  Score=87.26  Aligned_cols=54  Identities=35%  Similarity=0.637  Sum_probs=48.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHh-hhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~-rtHTGE  290 (290)
                      |.|..|++.|..+..|..|+++|+++++|.|  +.|++.|.+...|.+|+ ++|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSCSEEC--TTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCCCccC--CCCCCccCCHHHHHHHHHHHcCCc
Confidence            7899999999999999999999999999999  78999999999999996 788874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.23  E-value=2.7e-12  Score=94.27  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             cccc--cccCccccccCchhhHHHHhcCCCCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCC---C
Q psy16225        168 MQSA--GTHGAFFRYMRQPIKQDMTCLWIDTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR---N  240 (290)
Q Consensus       168 ~~~C--~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~---C  240 (290)
                      .|.|  ..|++.|.....|.+|+++ |.++++|.|+.  |++.|.+...|.+|+++++ +           +.|..   |
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-~-----------~~C~~~~~C   67 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-G-----------YPCKKDDSC   67 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH-HHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-S-----------EECCSCSSC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH-hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC-C-----------CCCCCCCCC
Confidence            3679  9999999999999999877 67789999998  9999999999999999844 3           46777   9


Q ss_pred             CCCCCcchhhhchhhhcC
Q psy16225        241 GRPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       241 gksF~sks~L~~H~rvHt  258 (290)
                      ++.|.....|..|+++|+
T Consensus        68 ~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           68 SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCEESSHHHHHHHHHHCC
T ss_pred             CCccCCHHHHHHHHHhcC
Confidence            999999999999999874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=1.3e-11  Score=95.46  Aligned_cols=79  Identities=10%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             ccccccCchhhHHHHhcCCCCCCcCCccCccc-CChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhch-
Q psy16225        176 AFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMF-NNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNH-  253 (290)
Q Consensus       176 ~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF-~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H-  253 (290)
                      ..|.....+..|+.. +..+++|.|++|++.| .....|+.|+++ | ++++        |.|.+|++.|..+..|..| 
T Consensus        14 ~~~~~~~~~~~~~~~-~~~~~~~~C~~C~k~F~~~~~~L~~H~~~-h-~~k~--------~~C~~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLE-IVDKGSVSCPTCQAVGRKTIEGLKKHMEN-C-KQEM--------FTCHHCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CSSCTTCHHHHHHHH-HHHTSCEECTTTCSCEESSHHHHHHHHHH-H-CCCC--------CCCSSSCCCCSSHHHHHHHH
T ss_pred             CCCCCchHHHHHHHH-hcCCCCcCCCCCCCCcccCHHHHHHHHHH-H-CCCC--------eECCCCCCeeCCHHHHHHHh
Confidence            345566667777766 5567999999999999 999999999999 5 6555        8999999999999999999 


Q ss_pred             hhhcCCCCcccC
Q psy16225        254 IRVHTGEKPFPC  265 (290)
Q Consensus       254 ~rvHtgeKpf~C  265 (290)
                      +++|+++..|.+
T Consensus        83 ~~~H~~~p~~~~   94 (96)
T 2ctd_A           83 MANHNSLPSGPS   94 (96)
T ss_dssp             HHHTCCCSSCSC
T ss_pred             HHhcCCCCCCCC
Confidence            889987655544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=4.6e-12  Score=93.56  Aligned_cols=67  Identities=22%  Similarity=0.402  Sum_probs=58.8

Q ss_pred             HHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCC----CcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        213 IVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE----KPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       213 L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtge----Kpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |.+|+++ |.++++        |.|.+|++.|..+..|..|+++|..+    ++|+|  ..|++.|.....|.+|+++|+
T Consensus         3 ~~~H~~~-H~~~k~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A            3 SGSSGRT-HTGEKP--------YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             TTCCSTT-CCCCCC--------EECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEEC--SSSCCEESCHHHHHHHHHHCC
T ss_pred             cccccce-ecCCCC--------CcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceEC--CCCCChhCCHHHHHHHHHHcc
Confidence            5678888 666555        89999999999999999999876654    79999  889999999999999999998


Q ss_pred             CC
Q psy16225        289 EV  290 (290)
Q Consensus       289 GE  290 (290)
                      ++
T Consensus        72 ~~   73 (86)
T 1x6h_A           72 GP   73 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=6.5e-12  Score=90.57  Aligned_cols=67  Identities=39%  Similarity=0.651  Sum_probs=55.7

Q ss_pred             HHHHhhhhcccCCCcccccCccccCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        212 EIVTHLTVEHVGGPECTTHACFWDGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       212 ~L~~H~~~~H~g~~~~~~~~C~~~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      .+..|+...+.++++        |.|+  .|++.|..+..|..|+++|.++++|+|  +.|++.|.+...|.+|+++|+
T Consensus         5 ~~~~~~~~~~~~~~~--------~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRP--------YACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ---CTTSCCCCCCCC--------EECSSTTBCCEESSHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHTTCC
T ss_pred             CccchhhccCCCCCc--------cCCcCCCCCCccCCHHHHHHHHHhhCCCCCeEC--CCCCchhCCHHHHHHHHHhcC
Confidence            455566665666655        7886  699999999999999999999999999  789999999999999999986

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=9.4e-12  Score=89.25  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCccc
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFP  264 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~  264 (290)
                      +.++++|.|++|++.|.....|.+|+++ |.++++        |.|.+|++.|..+..|..|+++|.++++..
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRP--------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSCS--------EECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCC--------EeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            5567899999999999999999999988 555554        789999999999999999999999888753

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=5.5e-12  Score=92.17  Aligned_cols=51  Identities=31%  Similarity=0.522  Sum_probs=30.5

Q ss_pred             cCCCCCCCCCCcchhhhchhh-hcCCC-CcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR-VHTGE-KPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r-vHtge-Kpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |.|++|++.|..+..|..|++ .|.++ ++|+|  +.|++.|.+...|.+|+++|
T Consensus        16 ~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A           16 YECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHSSSSCSSEEC--SSSSCEESSHHHHHHHHHHT
T ss_pred             eECCCcCchhCCHHHHHHHHHHhcCCCCCccCC--CCCCCccCCHHHHHHHHHHh
Confidence            556666666666666666654 45543 56666  55666666666666666654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=1.7e-11  Score=89.42  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CCCcccccc--cCccccccCchhhHHHHhcCCCCCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCCC
Q psy16225        165 TNAMQSAGT--HGAFFRYMRQPIKQDMTCLWIDTPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRN  240 (290)
Q Consensus       165 ~~~~~~C~~--Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~C  240 (290)
                      ....|.|..  |++.|.....|.+|++..|..+++|.|++  |++.|.....|.+|+++ |.++++        |.|.+|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~C   74 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRD--------YICEFS   74 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH-HHTSCC--------CSCCSS
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH-hCCCCC--------eeCCCC
Confidence            345678875  99999999999999986688899999999  99999999999999998 555555        899999


Q ss_pred             CCCCC
Q psy16225        241 GRPFK  245 (290)
Q Consensus       241 gksF~  245 (290)
                      ++.|.
T Consensus        75 ~k~F~   79 (79)
T 2dlk_A           75 GPSSG   79 (79)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99984

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=9e-12  Score=88.07  Aligned_cols=54  Identities=26%  Similarity=0.528  Sum_probs=47.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhh-c-CCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRV-H-TGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rv-H-tgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|+.|++.|..+..|..|+++ | .++++|+|  +.|++.|.+...|.+|+++|.|.
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A           11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSSSSCCCEEC--TTTCCEESCHHHHHHHHHHHTC-
T ss_pred             eECCCCcchhCCHHHHHHHHHHHcCCCCcCeEC--CCCCCccCCHHHHHHHHHHHcCC
Confidence            7888899999999999999887 7 58899999  78999999999999999988763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.16  E-value=6.6e-13  Score=99.56  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             CcccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCc
Q psy16225        167 AMQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKA  246 (290)
Q Consensus       167 ~~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~s  246 (290)
                      ..|.|..|++.|.....|..|+.+ |.++++|.|++|++.|.....|.+|++++|.  .+        +.|..|++.|..
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--~~--------~~c~~C~~~f~~   70 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHI--LP--------ILEDKVEELLSK   70 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH-HHCCCCEECTTTCCEESSHHHHHHHHHHHTH--HH--------HHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHH-cCCCCCccCCCCCCccCCHHHHHHHHHHhCC--Cc--------chHHHHHHHHHH
Confidence            358899999999999999999887 7788999999999999999999999999663  22        789999999999


Q ss_pred             chhhhchhhhc
Q psy16225        247 KYKLVNHIRVH  257 (290)
Q Consensus       247 ks~L~~H~rvH  257 (290)
                      +..|..|++.+
T Consensus        71 ~~~L~~H~~~~   81 (88)
T 1llm_C           71 NYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HhhhHHHHHHH
Confidence            99999999843

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=2.7e-11  Score=87.45  Aligned_cols=61  Identities=31%  Similarity=0.485  Sum_probs=50.9

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.++++|.|++|++.|.....|.+|+++ |.++++        |.|.+|++.|..+..|..|+++|+++.
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEKP--------YKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG-GGCSCC--------EECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHh-cCCCCC--------eECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5677889999999999999999999988 555544        788999999999999999999888764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.3e-12  Score=93.50  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             cCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        181 MRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       181 ~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      ...|..|+++ |.++++|.|++|++.|.....|..        +.+        +.|+.|++.|..+..|..|+++|+++
T Consensus         3 ~~~l~~H~~~-h~~~~~~~C~~C~k~f~~~~~l~~--------~~~--------~~C~~C~~~f~~~~~l~~H~~~H~~~   65 (73)
T 2ctu_A            3 SGSSGKRQKI-HLGDRSQKCSKCGIIFIRRSTLSR--------RKT--------PMCEKCRKDSCQEAALNKDEGNESGK   65 (73)
T ss_dssp             CCSCCCCCCC-CCCCSEEECSSSCCEEECCCCCCC--------SSS--------CCCHHHHHTCSCCCSSCCCSSCCCCC
T ss_pred             chhHHHHHHH-hCCCCCeeCCcccchhCCHHHhCc--------CCC--------CCCCCCChhhcCHHHHHHHHHhhcCC
Confidence            4556777665 778899999999999998887765        222        79999999999999999999999999


Q ss_pred             CcccCCCCCC
Q psy16225        261 KPFPCPFPTC  270 (290)
Q Consensus       261 Kpf~C~~~~C  270 (290)
                      ++|+|  +.|
T Consensus        66 ~~~~C--~~C   73 (73)
T 2ctu_A           66 KTSGP--SSG   73 (73)
T ss_dssp             CCSSC--CCC
T ss_pred             CCCCC--CCC
Confidence            99999  667

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=88.48  Aligned_cols=66  Identities=14%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhccc--CCCcccccCccccCCCCCCCCCCcchhhhchh-hhcCCCCcccC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHV--GGPECTTHACFWDGCPRNGRPFKAKYKLVNHI-RVHTGEKPFPC  265 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~--g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~-rvHtgeKpf~C  265 (290)
                      |.++++|.|++|++.|.....|.+|+++++.  .+++        |.|.+|++.|..+..|..|+ +.|.++++...
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~--------~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR--------FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC--------EECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc--------cCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            5567888888888888888888888887443  1333        67888888888888888887 46777766544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=2.2e-11  Score=88.88  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             hhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCC-CcccccCccccCCCCCCCCCCcchhhhchhhh-cCCCC
Q psy16225        184 PIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGG-PECTTHACFWDGCPRNGRPFKAKYKLVNHIRV-HTGEK  261 (290)
Q Consensus       184 l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~-~~~~~~~C~~~~C~~CgksF~sks~L~~H~rv-HtgeK  261 (290)
                      +.+|+++ |.++++|.|++|++.|.....|.+|++..|.++ ++        |.|++|++.|..+..|..|+++ |..+.
T Consensus         3 ~~~H~~~-H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~--------~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK--------FHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCC-CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSS--------EECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCccccc-cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCc--------cCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3445554 677889999999999999999999987546553 44        7899999999999999999886 44444


Q ss_pred             c
Q psy16225        262 P  262 (290)
Q Consensus       262 p  262 (290)
                      |
T Consensus        74 p   74 (77)
T 2ct1_A           74 P   74 (77)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.09  E-value=1.2e-11  Score=98.87  Aligned_cols=81  Identities=9%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             cccccccCcccc-----ccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCC
Q psy16225        168 MQSAGTHGAFFR-----YMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGR  242 (290)
Q Consensus       168 ~~~C~~Cg~~F~-----~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cgk  242 (290)
                      .+.|+.|++.|.     ....+..++++ |.++++|.|++|++.|.....|.+|+++ |  +.+        |.|+.|++
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~~-h~~~~~~~C~~C~k~f~~~~~l~~H~~~-H--~~~--------~~C~~C~k  108 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLLA-SKAISQFVCPLCLMPFSSSVSLKQHIRY-T--EHT--------KVCPVCKK  108 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHHH-HHHHCSEECTTTCCEESSHHHHHHHHHH-T--CCC--------CBCTTTCC
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHHH-hCCCCCeECCCCCcccCCHhHHHHHHHH-C--CCC--------CCCCCCCc
Confidence            466888888887     33344444444 6678999999999999999999999998 5  333        79999999


Q ss_pred             CCCcchhhhchhhhcCCC
Q psy16225        243 PFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       243 sF~sks~L~~H~rvHtge  260 (290)
                      .|..+..|..|+++|+++
T Consensus       109 ~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          109 EFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             BCSSHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHCCc
Confidence            999999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.09  E-value=7.3e-11  Score=80.74  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      +|.|++|++.|.....|..|+++ |.++.+        |.|+.|++.|..+..|..|+++|.++|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT-HTDVRP--------YHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCCC--------EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh-cCCCCC--------ccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57888888888888888888887 555444        788888888888888888888888765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=7.9e-11  Score=85.99  Aligned_cols=53  Identities=30%  Similarity=0.580  Sum_probs=39.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCC---CCcccCCCCCCCCccCChHHHHHHh-hhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTG---EKPFPCPFPTCGKVFARSENLKIHK-RTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtg---eKpf~C~~~~CgKsFs~~s~L~~H~-rtHTG  289 (290)
                      |.|.+|++.|..+..|..|+++|.+   +++|+|  ..|++.|.....|.+|+ +.|.+
T Consensus         8 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHHHTTTCCEEC--TTTCCEESSHHHHHHHHHHTSTT
T ss_pred             eECCCCCCeeCCHHHHHHHHHHhhccCCCcccCC--CCCCchhCCHHHHHHHHHHhCCC
Confidence            6777788888888888888777775   677888  66888888888888887 45554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.05  E-value=9.6e-11  Score=89.13  Aligned_cols=54  Identities=17%  Similarity=0.130  Sum_probs=29.8

Q ss_pred             cccccccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhccc
Q psy16225        168 MQSAGTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHV  222 (290)
Q Consensus       168 ~~~C~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~  222 (290)
                      .|.|..||+.|.....|.+|+++ |.++++|.|++|++.|.+...|.+|++..|.
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHLRL-LHAAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHHHT-TSCSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CEECCCCCCCcCcHHHHhhhhhh-ccCCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            45555555555555555555544 4455555555555555555555555543343

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=5.9e-11  Score=93.31  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCCcchhhhchhh-hc---CCCCcccCCCCCCCCccCChHHHHHH-hhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR-VH---TGEKPFPCPFPTCGKVFARSENLKIH-KRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r-vH---tgeKpf~C~~~~CgKsFs~~s~L~~H-~rtHTGE  290 (290)
                      |.|.+|++.|..+..|..|++ +|   .++++|+|  ..||+.|...+.|.+| +++|+||
T Consensus        19 y~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C--~~Cgk~F~~~~~L~~H~~r~Htge   77 (102)
T 2ghf_A           19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVC--VECNFLTKRYDALSEHNLKYHPGE   77 (102)
T ss_dssp             EECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEE--TTTTEEESSTHHHHTHHHHTSTTC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhcCCC
Confidence            899999999999999999998 59   67899999  8899999999999999 8999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=4.5e-11  Score=84.40  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcc-cCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEH-VGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG  259 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H-~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtg  259 (290)
                      |.++++|.|+.|++.|.....|.+|++++| .++++        |.|+.|++.|..+..|..|+++|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~--------~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV--------YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC--------EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC--------eECCCCCCccCCHHHHHHHHHHHcC
Confidence            667788999999999999999999988755 45554        7888999999999999999887764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.03  E-value=1e-10  Score=80.04  Aligned_cols=55  Identities=24%  Similarity=0.324  Sum_probs=40.9

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcC
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHt  258 (290)
                      +++|.|.+|++.|.....|..|+++ |.++++        |.|++|++.|..+..|..|+++|.
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRT-HTGEKP--------YKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHH-HHCCCC--------EECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHH-cCCCCC--------cCCCCCcchhCCHHHHHHHHHHhc
Confidence            4678888888888888888888887 444444        678888888888888888888765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=83.94  Aligned_cols=53  Identities=43%  Similarity=0.842  Sum_probs=47.8

Q ss_pred             cCCCC--CCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        235 DGCPR--NGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       235 ~~C~~--CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      +.|..  |++.|..+..|..|+++|+++++|+|.++.|++.|.....|.+|+++|
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            78877  999999999999999999999999994335999999999999999886

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.2e-10  Score=85.37  Aligned_cols=54  Identities=31%  Similarity=0.436  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhh-cCCCCc--------ccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRV-HTGEKP--------FPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rv-HtgeKp--------f~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +.|..|++.|..+..|..|+++ |.++++        |.|  ..|++.|.+...|.+|+++|+||
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   88 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGE   88 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTC--SSTTCCCSSHHHHHHHHHHHHTC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCC--CCCCcccCCHHHHHHHHHhcCCC
Confidence            5699999999999999999997 999888        999  88999999999999999999986

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=3.5e-10  Score=78.21  Aligned_cols=56  Identities=20%  Similarity=0.395  Sum_probs=43.9

Q ss_pred             CCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchh-hhcCCC
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHI-RVHTGE  260 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~-rvHtge  260 (290)
                      ++|.|+.|++.|.....|.+|+++ |.++++        |.|+.|++.|..+..|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKP--------YPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSCS--------EECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH-hCCCCC--------ccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            468888888888888888888887 555444        78888888888888888886 577765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.5e-10  Score=82.23  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=41.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCC-CCCCccCChHHHHHHhhhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFP-TCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~-~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|..|++.|. +..|..|+++ ++++||+|  + .|++.|...+.|.+|+++|..
T Consensus        11 ~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C--~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A           11 QPCTYCTKEFV-FDTIQSHQYQ-CPRLPVAC--PNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             EECSSSCCEEE-HHHHHHHHHH-CSSSEEEC--TTCCSCCEEETTTHHHHHHTTSS
T ss_pred             eeccccCCccC-HHHHHHHHHH-cCCcCccC--CcccCcccccHHHHHHHHHhhcc
Confidence            67888888888 8888888887 78888888  6 788888888888888887754

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.93  E-value=4.7e-10  Score=76.62  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             CCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       241 gksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++.|.....|..|+++|+++++|.|  ..|++.|.+.+.|.+|+++|+||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATC--PICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEEC--TTTCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccC--CCCCcccCCHHHHHHHHHHhccC
Confidence            5778899999999999999999999  88999999999999999999986

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.91  E-value=3.4e-10  Score=81.40  Aligned_cols=65  Identities=25%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             hhHHHHhcCCCCCCcCC--ccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcC
Q psy16225        185 IKQDMTCLWIDTPGPRK--TCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       185 ~~H~~~~h~~e~~~~C~--~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHt  258 (290)
                      ..|....+.++++|.|.  .|++.|.....|.+|+++ |.++++        |.|++|++.|..+..|..|+++|+
T Consensus         7 ~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKP--------FQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             -CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHH-HHCCCC--------EECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHh-hCCCCC--------eECCCCCchhCCHHHHHHHHHhcC
Confidence            34444446677889996  599999999999999988 555544        789999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.6e-09  Score=76.81  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             CCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCC-CCCCCCCcchhhhchhhhcCCCCc
Q psy16225        194 IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP-RNGRPFKAKYKLVNHIRVHTGEKP  262 (290)
Q Consensus       194 ~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~-~CgksF~sks~L~~H~rvHtgeKp  262 (290)
                      .+++|.|+.|++.|. ...|..|+++  .++++        |.|+ .|++.|..+..|..|+++|..+++
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~--~~~~p--------~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ--CPRLP--------VACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH--CSSSE--------EECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH--cCCcC--------ccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            457889999999999 8899999887  44444        7888 899999999999999998876654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.80  E-value=3.6e-09  Score=65.87  Aligned_cols=37  Identities=43%  Similarity=0.898  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+...|.+|+++|+||
T Consensus         1 ~H~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccC--CCCCcccCcHHHHHHHHHHhccC
Confidence            37889999999999  88999999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=4.1e-09  Score=71.97  Aligned_cols=40  Identities=30%  Similarity=0.457  Sum_probs=33.1

Q ss_pred             cCCCCCCCCCCcchhhhchhh-hcCCCCcccCCCCCCCCccCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR-VHTGEKPFPCPFPTCGKVFAR  276 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r-vHtgeKpf~C~~~~CgKsFs~  276 (290)
                      |.|++|++.|..+..|.+|++ +|+++++|+|  ..|++.|.+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C--~~C~k~F~~   53 (54)
T 2eps_A           13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS   53 (54)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCCCCS--SSSCCSSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhcCCCCCccC--CCCCCCCCC
Confidence            778888888888888888876 8888888888  778888875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4e-09  Score=69.11  Aligned_cols=44  Identities=27%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ytn_A            3 SGSS-GTGKKP--------YKCNECGKVFTQNSHLARHRGIHTGEKPSGP--SSG   46 (46)
T ss_dssp             CCCC-CSCCSS--------CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSC--CCC
T ss_pred             CCcC-CCCCcC--------eECCCCCCeeCCHHHHHHHhhhcCCCCCCCC--CCC
Confidence            5555 445444        6788888888888888888888888888888  555

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.74  E-value=4.5e-09  Score=68.86  Aligned_cols=44  Identities=25%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2em0_A            3 SGSS-GMGEKT--------WKCRECDMCFSQASSLRLHQNVHVGEKPSGP--SSG   46 (46)
T ss_dssp             CCCC-SCCCCC--------CCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS--SCC
T ss_pred             CcCc-cCCCcC--------eECCCCCcccCCHHHHHHHHHHcCCCCCcCC--CCC
Confidence            5565 445444        6778888888888888888888888888888  555

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.72  E-value=4e-09  Score=69.20  Aligned_cols=34  Identities=38%  Similarity=0.619  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2emk_A           13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP--SSG   46 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHHHHSSCCCSSC--CCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.5e-09  Score=68.74  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2eq4_A            3 SGSS-GTGEKL--------YNCKECGKSFSRAPCLLKHERLHSGEKPSGP--SSG   46 (46)
T ss_dssp             CCCC-SSCCCC--------CCBTTTTBCCSCHHHHHHHHHHCCSSSCCCC--CCC
T ss_pred             Cccc-CCCCCC--------eECCCCCCccCchHHHHHHHHhcCCCCCCCC--CCC
Confidence            5555 444444        6777778888888788888777887888877  555

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.8e-09  Score=68.59  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=31.6

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2eop_A            3 SGSS-GTGEKP--------HECRECGKSFSFNSQLIVHQRIHTGENPSGP--SSG   46 (46)
T ss_dssp             CCCS-CCCCCS--------CBCTTTCCBCSSHHHHHHHHTTTTTSCCSCC--CCC
T ss_pred             Cccc-cCCCCC--------eeCCCCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            5555 444444        6777788888888888888888888888887  555

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=7.2e-11  Score=84.22  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             hHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        210 MHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       210 ~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ...|..|+++ |.++++        |.|.+|++.|..+..|..       +++|.|  +.|++.|.+...|.+|+++|+|
T Consensus         3 ~~~l~~H~~~-h~~~~~--------~~C~~C~k~f~~~~~l~~-------~~~~~C--~~C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A            3 SGSSGKRQKI-HLGDRS--------QKCSKCGIIFIRRSTLSR-------RKTPMC--EKCRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             CCSCCCCCCC-CCCCSE--------EECSSSCCEEECCCCCCC-------SSSCCC--HHHHHTCSCCCSSCCCSSCCCC
T ss_pred             chhHHHHHHH-hCCCCC--------eeCCcccchhCCHHHhCc-------CCCCCC--CCCChhhcCHHHHHHHHHhhcC
Confidence            3457788887 656555        899999999999998876       789999  8899999999999999999998


Q ss_pred             C
Q psy16225        290 V  290 (290)
Q Consensus       290 E  290 (290)
                      |
T Consensus        65 ~   65 (73)
T 2ctu_A           65 K   65 (73)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5.4e-09  Score=68.34  Aligned_cols=44  Identities=32%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2ytr_A            3 SGSS-GTGEKP--------YKCNECGKAFSQTSKLARHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             SSCC-CSSCCT--------TCCTTTCCCCSSHHHHHHHHTTTTTCSCCCS--CCC
T ss_pred             CCcC-CCCCcC--------cCCCCCCCccCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            5555 444444        6788888888888888888888888888888  555

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.3e-09  Score=68.12  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=27.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|.+|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2epz_A           13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHTTTTTCCCCSS--CCC
T ss_pred             eECCCCCceeCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6788888888888888888888888888888  555

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.71  E-value=4e-09  Score=69.00  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2el4_A            2 SSGSS-GTGVKP--------YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP--SSG   46 (46)
T ss_dssp             CCCCC-SCCCCS--------EECSSSSCEESSHHHHHHHGGGSSSCCCSCC--TTC
T ss_pred             ccccC-CCCCCc--------eECCCCCchhCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            35555 444444        6777778888888888888888888888877  555

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.6e-09  Score=68.38  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2eoq_A           13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP--SSG   46 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHTTCCCSSSC--CCC
T ss_pred             cCCCcCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777788888888888888778888888887  555

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.70  E-value=6.5e-09  Score=68.18  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ely_A            3 SGSS-GTGEKP--------FKCVECGKGFSRRSALNVHHKLHTGEKPSGP--SSG   46 (46)
T ss_dssp             CCCC-CCCCCS--------BCCSSSCCCBSSTTHHHHHHHHHSCCSSCSC--CCC
T ss_pred             CCCC-CCCCCC--------cccCccCcccCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            5555 455544        6788888888888888888888888888888  555

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.4e-09  Score=68.35  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2eov_A           13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP--SSG   46 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHHSCCSSCCS--CCC
T ss_pred             ccCCccChhhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.9e-09  Score=68.65  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         2 ~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ytg_A            2 SSGSS-GTGEKP--------FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP--SSG   46 (46)
T ss_dssp             CCCCC-CSSCCS--------EECTTTCCEESSSHHHHTTGGGGSSCCSSCS--CCC
T ss_pred             CCCCC-CCCCCC--------eECCCCCcccCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            36666 555554        7888888999888889889888888889988  666

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=7.5e-09  Score=67.88  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2elz_A           13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP--SSG   46 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGGGSCCCCCS--CCC
T ss_pred             eeCcccCchhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.3e-09  Score=68.94  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2eml_A           13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGSSCCCSCS--SCC
T ss_pred             eeCCCcCCccCCHHHHHHHHHHhcCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.69  E-value=4.2e-09  Score=69.00  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2ema_A           13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTGGGCCCCCSS--SCC
T ss_pred             cCCCCCcchhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4e-09  Score=68.98  Aligned_cols=34  Identities=35%  Similarity=0.618  Sum_probs=25.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2emm_A           13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSCCCTTSS--SCC
T ss_pred             eeCCCCChhhCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=7.7e-09  Score=67.81  Aligned_cols=34  Identities=38%  Similarity=0.684  Sum_probs=26.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|.+|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ytq_A           13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP--SSG   46 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHTTTCCSCSSCC--CCC
T ss_pred             cCCCccChhhCChHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777778888888788888777888888877  555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.5e-09  Score=68.53  Aligned_cols=34  Identities=35%  Similarity=0.540  Sum_probs=25.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2emf_A           13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHGGGTSCSSCSCC--CCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.7e-09  Score=68.74  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2ep2_A           13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHTTSSCCSCCS--CCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=65.34  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A           11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             eECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4555555555555555555555555555555

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.6e-09  Score=68.69  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=25.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2eoe_A           13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP--SSG   46 (46)
T ss_dssp             SEETTTTEECSSHHHHHHHHGGGSCCCSCSS--CCC
T ss_pred             eECCCcChhhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.8e-09  Score=68.72  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ++|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2eq0_A           13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTCCCCCSCC--SCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.1e-09  Score=68.57  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=24.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2ytj_A           13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCSSC--SCC
T ss_pred             eECCCCChhhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6677777777777777777777777777777  444

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5e-09  Score=68.62  Aligned_cols=34  Identities=35%  Similarity=0.546  Sum_probs=26.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ene_A           13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTCCCCCCSC--CCC
T ss_pred             eECCCCCchhCChHHHHHHHhhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.3e-09  Score=68.94  Aligned_cols=34  Identities=38%  Similarity=0.598  Sum_probs=25.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~c   46 (46)
T 2ytk_A           13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSSSCSSC--CCC
T ss_pred             EeCCcCCCccCCHHHHHHHHHHHCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=5.1e-09  Score=68.70  Aligned_cols=45  Identities=31%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         2 ~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2em5_A            2 SSGSS-GSSTKS--------HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             CCCCC-CCCSCS--------EECSSSCCEESSHHHHHHHHTTTSCSCCSSC--CCC
T ss_pred             CCcCC-CCCCCC--------eECCcCCCccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            35555 444444        6777788888888888888888888888888  555

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.67  E-value=1.1e-08  Score=65.56  Aligned_cols=31  Identities=32%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A           11 YECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             ccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            4555555555555555555555555555555

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=6.9e-09  Score=67.92  Aligned_cols=34  Identities=35%  Similarity=0.501  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2em7_A           13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHGGGGTTCCCSST--TCC
T ss_pred             ccCCCccchhCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.5e-09  Score=68.43  Aligned_cols=31  Identities=35%  Similarity=0.657  Sum_probs=23.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ep3_A           13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTTTSCCCCT
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            6777777777777777777777777777777

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=4.5e-09  Score=68.83  Aligned_cols=34  Identities=38%  Similarity=0.694  Sum_probs=24.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2emy_A           13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHTTSCCSCS--SCC
T ss_pred             cCCCCCCcccCcHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=4.2e-09  Score=69.00  Aligned_cols=34  Identities=32%  Similarity=0.571  Sum_probs=24.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~c   46 (46)
T 2emh_A           13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHCSSCSSS--CCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=5.5e-09  Score=68.32  Aligned_cols=34  Identities=32%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2en8_A           13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP--SSG   46 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTCCSCSSCC--SCC
T ss_pred             eECCCcCcccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.7e-09  Score=65.89  Aligned_cols=31  Identities=42%  Similarity=0.677  Sum_probs=18.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             BCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             eeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5556666666666666666666666666555

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.66  E-value=6.7e-09  Score=67.87  Aligned_cols=34  Identities=35%  Similarity=0.564  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2em9_A           13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHGGGGTSCCCCST--TCC
T ss_pred             eECCccccccCChHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=6e-09  Score=68.11  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=25.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2epw_A           13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSSHHHHHHHHHCCSCCCSCC--CCC
T ss_pred             eeCCCCCCccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4.5e-09  Score=68.86  Aligned_cols=34  Identities=32%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2emp_A           13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHHCCSCCSC--CCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6677777777777777777777777777777  545

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.1e-09  Score=67.77  Aligned_cols=34  Identities=38%  Similarity=0.550  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2eme_A           13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGCCCSCCSS--CCC
T ss_pred             eECCCCChhhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=1.4e-08  Score=66.38  Aligned_cols=37  Identities=24%  Similarity=0.565  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2em0_A            2 SSGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGE   38 (46)
T ss_dssp             CCCCCSCCCCCCCC--SSSCCCCSSHHHHHHHGGGGSSS
T ss_pred             CCcCccCCCcCeEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=66.24  Aligned_cols=37  Identities=41%  Similarity=0.749  Sum_probs=26.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (44)
T 2epv_A            2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGV   38 (44)
T ss_dssp             CCCCCCCCCCSEEC--SSSCCEESSHHHHHHHHGGGSSC
T ss_pred             CCCcccCCCcCeEC--CCCCcccCchHHHHHHHhHhcCC
Confidence            46667777777777  66777777777777777777664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=66.21  Aligned_cols=42  Identities=38%  Similarity=0.556  Sum_probs=30.4

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            2 SSGSS-GTGGKP--------YQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCS-SSSSCS--------SSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             Ccccc-cCCCCC--------eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            35665 545444        6777788888888888888888888888777

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.1e-08  Score=66.24  Aligned_cols=35  Identities=37%  Similarity=0.745  Sum_probs=18.2

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |+++|+++++|+|  +.|++.|.+...|.+|+++|++
T Consensus         3 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2yu5_A            3 SGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHAR   37 (44)
T ss_dssp             CSCCCSCCCSEEC--SSSSCEESSSHHHHHHHHHCCC
T ss_pred             CccccCCCCCeEC--CCCCchhCCHHHHHHHhHhcCC
Confidence            4445555555555  4455555555555555555544

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.65  E-value=1.5e-08  Score=66.38  Aligned_cols=37  Identities=41%  Similarity=0.758  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emk_A            2 SSGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGE   38 (46)
T ss_dssp             CCCCCCSSSCSCBC--SSSCCBCSCHHHHHHHHHHHSSC
T ss_pred             CCCCccCCCCceEC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            68899999999999  88999999999999999999985

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=5.9e-09  Score=68.27  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=25.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2ytd_A           13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHTCCCSSCS--SCC
T ss_pred             eECCCCCCeeCChHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.6e-08  Score=66.08  Aligned_cols=37  Identities=38%  Similarity=0.720  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2ytn_A            2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGE   38 (46)
T ss_dssp             CCCCCCSCCSSCBC--TTTCCBCSSHHHHHHHGGGTSCC
T ss_pred             CCCcCCCCCcCeEC--CCCCCeeCCHHHHHHHhhhcCCC
Confidence            58899999999999  88999999999999999999986

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=65.63  Aligned_cols=31  Identities=35%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A           13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             eECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            5556666666666666666666666666555

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=5e-09  Score=68.63  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=26.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2yu8_A           13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSSHHHHHHTHHHHSCCCSCS--CCC
T ss_pred             eECCcCCchhCCHHHHHHHHHhcCCCCCCCC--CCC
Confidence            6777778888877778888777877788877  555

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.65  E-value=7.5e-09  Score=67.87  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2el6_A           13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP--SSG   46 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSSCCSC--CCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=6.5e-09  Score=67.43  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=23.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   44 (44)
T 2emx_A           11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP--SSG   44 (44)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHTSSCSCSC--CCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6677777777777777777777777777777  445

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.5e-08  Score=66.34  Aligned_cols=42  Identities=31%  Similarity=0.440  Sum_probs=29.4

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            2 SSGSS-GTGEKP--------YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCC-CCCCCS--------CBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             CCCcC-CCCCcC--------eECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            35555 444444        6777777777777777777777777777777

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.8e-08  Score=66.05  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            2 SSGSS-GSGEKP--------FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSC-CCCSSS--------BCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             CcccC-CCCCcC--------CCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            45665 444444        6777777777777777777777777777777

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=66.39  Aligned_cols=37  Identities=41%  Similarity=0.714  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytj_A            2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQ   38 (46)
T ss_dssp             CSSCTTSSCCSEEC--SSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CcccCCCCCcCeEC--CCCChhhCCHHHHHHHHHHcCCC
Confidence            68999999999999  88999999999999999999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=65.56  Aligned_cols=35  Identities=46%  Similarity=0.798  Sum_probs=18.7

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |+++|+++++|+|  +.|++.|.+..+|.+|+++|+|
T Consensus         3 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eof_A            3 SGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTG   37 (44)
T ss_dssp             CSSCCSCCCSEEC--TTTCCEESCHHHHHHHHHHTTT
T ss_pred             CccCCCCCCCeEC--CCCCcccCCHhHHHHHHHHhCC
Confidence            4455555555555  4455555555555555555554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.6e-08  Score=66.06  Aligned_cols=37  Identities=38%  Similarity=0.625  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq4_A            2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGE   38 (46)
T ss_dssp             CCCCCSSCCCCCCB--TTTTBCCSCHHHHHHHHHHCCSS
T ss_pred             CCcccCCCCCCeEC--CCCCCccCchHHHHHHHHhcCCC
Confidence            58899999999999  88999999999999999999985

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=7.2e-09  Score=67.85  Aligned_cols=45  Identities=31%  Similarity=0.419  Sum_probs=31.0

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus         2 ~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2en1_A            2 SSGSS-GSGEKP--------FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP--SSG   46 (46)
T ss_dssp             CSTTC-CCCCCS--------EEETTTTEEESSHHHHHHHGGGGSCCCCSCC--CCC
T ss_pred             CcccC-CCCCCC--------eeCCCCCcccCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            35555 444444        6777777777777777777777777777777  555

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.7e-08  Score=66.11  Aligned_cols=31  Identities=32%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A           13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             cCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6777777777777777777777777777777

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.8e-08  Score=65.81  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            2 SSGSS-GTGEKP--------YECSDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCCC-CSSCCS--------SCCSSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             ccccC-CCCCCC--------cCCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            35665 444444        6777788888888888888888888888877

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.4e-08  Score=66.57  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A           13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             EECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            5566666666666666666666666666666

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=9.4e-09  Score=67.49  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2ytm_A           13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP--SSG   46 (46)
T ss_dssp             SSBTTTTBCCSSHHHHHHHHHHHHSCCCCCC--CCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=66.22  Aligned_cols=37  Identities=38%  Similarity=0.810  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eml_A            2 SSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGK   38 (46)
T ss_dssp             CCCCCCSSCCSEEC--SSSCCEESSHHHHHHHHGGGSSC
T ss_pred             CccCCcCCCCCeeC--CCcCCccCCHHHHHHHHHHhcCC
Confidence            68999999999999  88999999999999999999986

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.7e-08  Score=66.05  Aligned_cols=42  Identities=29%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            2 SSGSS-GTGEKP--------YKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCC-CSCCCT--------TCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCCcC-CCCCcC--------eECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            35555 444444        6777778888777778778777777777777

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.63  E-value=1.4e-08  Score=66.55  Aligned_cols=31  Identities=39%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A           13 FECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             EECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5666666666666666666666666666666

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=66.46  Aligned_cols=37  Identities=41%  Similarity=0.730  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ep3_A            2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGE   38 (46)
T ss_dssp             CCCSSSSCCCSEEC--SSSCCEESSHHHHHHHHTTTTTS
T ss_pred             CCCCCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            68999999999999  88999999999999999999985

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.6e-09  Score=68.48  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=23.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2eoo_A           13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHSTTSSCC--SCC
T ss_pred             EEccccCcccCCHHHHHHHHHHHcCCCCCCC--CCC
Confidence            5666677777777777777767777777776  444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.3e-08  Score=65.00  Aligned_cols=37  Identities=38%  Similarity=0.744  Sum_probs=30.6

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         1 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   37 (42)
T 2ytb_A            1 GSSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGS   37 (42)
T ss_dssp             CCCCCCCSCCSBCC--TTTTCCBSSHHHHHTTGGGTSCC
T ss_pred             CCccccCCCCCeeC--CCccchhCCHHHHHHHHHHhCCC
Confidence            37778888888888  77888888888888888888875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.63  E-value=1.5e-08  Score=66.20  Aligned_cols=37  Identities=38%  Similarity=0.711  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2el4_A            2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGV   38 (46)
T ss_dssp             CCCCCSCCCCSEEC--SSSSCEESSHHHHHHHGGGSSSC
T ss_pred             ccccCCCCCCceEC--CCCCchhCCHHHHHHHHHHhCCC
Confidence            68999999999999  88999999999999999999986

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.9e-08  Score=65.78  Aligned_cols=37  Identities=41%  Similarity=0.669  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eoq_A            2 SSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAE   38 (46)
T ss_dssp             CCCCCSSSSCSCCC--SSSCCCCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCcCC--CcCCchhCCHHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999986

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.6e-08  Score=66.05  Aligned_cols=31  Identities=35%  Similarity=0.578  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A           13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             EECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             eeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            5666667777777777777666766666666

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.2e-08  Score=66.84  Aligned_cols=37  Identities=32%  Similarity=0.631  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|.|  +.|++.|.+.++|..|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2eoo_A            2 SSGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFRE   38 (46)
T ss_dssp             CCCCCCSCCCCEEC--SSSCCEESSHHHHHHHHHHHHST
T ss_pred             CCCCCCCCCCCEEc--cccCcccCCHHHHHHHHHHHcCC
Confidence            68999999999999  88999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=66.36  Aligned_cols=34  Identities=35%  Similarity=0.533  Sum_probs=26.2

Q ss_pred             cCCCCCCCCCCcchhhhchhh-hcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR-VHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r-vHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|++ +|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C--~~C   47 (47)
T 2epx_A           13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP--SSG   47 (47)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSC--CCC
T ss_pred             EECCccCchhCChHHHHHHhHhhcCCCCCCCC--CCC
Confidence            677777888888778888877 7887888877  555

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.5e-08  Score=66.40  Aligned_cols=31  Identities=42%  Similarity=0.674  Sum_probs=23.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A           13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             eECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            6777777777777777777777777777777

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=2e-08  Score=65.52  Aligned_cols=37  Identities=41%  Similarity=0.780  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eov_A            2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSCBC--SSSCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCccC--CccChhhCCHHHHHHHHHhcCCC
Confidence            68999999999999  88999999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.7e-08  Score=65.99  Aligned_cols=42  Identities=31%  Similarity=0.468  Sum_probs=30.3

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq1_A            2 SSGSS-GTGEKP--------YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCCC-CCCSCC--------CCCTTTTCCCSSHHHHHHHHTTTCCSCCSSC
T ss_pred             Ccccc-cCCCCC--------eECCcCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            35665 444444        6777788888888888888888888888777

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.8e-08  Score=64.64  Aligned_cols=35  Identities=43%  Similarity=0.792  Sum_probs=17.7

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |+++|+++++|+|  +.|++.|.+.+.|.+|+++|+|
T Consensus         2 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A            2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             CCSCCSSSCCBCC--SSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCcccCCCCCEEC--CCCCCccCCHHHHHHHHHhcCC
Confidence            3444555555555  4455555555555555555544

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=66.01  Aligned_cols=31  Identities=39%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A           13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            5666777777777777777777777777766

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1e-08  Score=67.09  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2enc_A           13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCSSCCSS--CCC
T ss_pred             cCCCCCCCcCCChHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.9e-08  Score=65.78  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=30.3

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            3 SGSS-GTGENP--------FICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCC-CCSCCS--------CBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCC-CCCCCC--------EECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5665 444444        6788888888888888888888888888877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.9e-08  Score=65.69  Aligned_cols=37  Identities=41%  Similarity=0.688  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+..+|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eop_A            2 SSGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGE   38 (46)
T ss_dssp             CCCCSCCCCCSCBC--TTTCCBCSSHHHHHHHHTTTTTS
T ss_pred             CCccccCCCCCeeC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=65.88  Aligned_cols=37  Identities=41%  Similarity=0.678  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emm_A            2 SSGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGE   38 (46)
T ss_dssp             CCCSCSSCCCSEEC--SSSCCEESSHHHHHHHHHHHSCC
T ss_pred             CCcCCcCCCCCeeC--CCCChhhCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.6e-08  Score=66.25  Aligned_cols=31  Identities=45%  Similarity=0.649  Sum_probs=20.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A           13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            5666666666666666666666666666666

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=66.08  Aligned_cols=37  Identities=38%  Similarity=0.707  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emf_A            2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGE   38 (46)
T ss_dssp             CCCSSSSSSCCEEC--SSSCCEESCHHHHHHHGGGTSCS
T ss_pred             ccccccCCCCCeEC--CCCCchhCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2e-08  Score=65.80  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=30.2

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            2 SSGSS-GMGEKC--------YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSC-CCCCCC--------CBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             CCccc-cCCCCC--------eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            35665 444444        6777788888888888888778888888777

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.62  E-value=1.1e-08  Score=67.85  Aligned_cols=42  Identities=33%  Similarity=0.592  Sum_probs=36.0

Q ss_pred             hhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        249 KLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       249 ~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .+..|..+|+++++|+|.++.|++.|.+.++|++|+++|+||
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            345566779999999995447999999999999999999986

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.62  E-value=1.7e-08  Score=66.07  Aligned_cols=37  Identities=41%  Similarity=0.725  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+..+|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ema_A            2 SSGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGE   38 (46)
T ss_dssp             CSCSSCTTSCCEEC--SSSCCEESSHHHHHHHHTGGGCC
T ss_pred             CCccCCCCCcCcCC--CCCcchhCCHHHHHHHHHhcCCC
Confidence            58899999999999  88999999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.2e-08  Score=65.34  Aligned_cols=36  Identities=36%  Similarity=0.670  Sum_probs=24.7

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  +.|++.|.+...|.+|+++|+||
T Consensus         2 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   37 (42)
T 2en2_A            2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGS   37 (42)
T ss_dssp             CCCCCCSSCSEEC--TTTCCEESSHHHHHHHTHHHHSC
T ss_pred             CCcccCCCCCEeC--CCcChhhCCHHHHHHHHHHcCCC
Confidence            5666677777777  56777777777777777776654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=65.84  Aligned_cols=31  Identities=42%  Similarity=0.578  Sum_probs=23.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|++++||+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A           13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             EECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            6777777777777777777777777777777

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1e-08  Score=67.05  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  ..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2yso_A           13 HQCRECGEIFFQYVSLIEHQVLHMGQKNSGP--SSG   46 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSCCSCCCT--TCC
T ss_pred             EEccccChhhCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.8e-08  Score=65.92  Aligned_cols=31  Identities=35%  Similarity=0.528  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A           13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             eECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5666777777777777777777777777766

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=66.29  Aligned_cols=37  Identities=35%  Similarity=0.592  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emp_A            2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGE   38 (46)
T ss_dssp             CCCSCSSCCCSEEC--SSSCCEESCHHHHHHHHHHHHCC
T ss_pred             CcccccCCCcCeEC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            68999999999999  88999999999999999999885

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.7e-08  Score=65.99  Aligned_cols=37  Identities=38%  Similarity=0.728  Sum_probs=24.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|.|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq2_A            2 SSGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGE   38 (46)
T ss_dssp             CCCCSSSSSCSSSC--CSSCCCCSSHHHHHHHGGGGCCC
T ss_pred             CcccccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            45666666666666  56666666666666666666654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=2e-08  Score=65.01  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=15.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A           13 YECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             EECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             eECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            4455555555555555555555555555544

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.7e-08  Score=66.05  Aligned_cols=37  Identities=41%  Similarity=0.726  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emy_A            2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGE   38 (46)
T ss_dssp             CCCCCCCSSCCEEC--SSSCCEESSHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCcCcCC--CCCCcccCcHHHHHHHHHHcCCC
Confidence            68899999999999  88999999999999999999985

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.4e-08  Score=65.38  Aligned_cols=37  Identities=35%  Similarity=0.648  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~h~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2elz_A            2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGE   38 (46)
T ss_dssp             CCCSCCCCCSSCBC--SSSCCBCSSHHHHHHHGGGGGSC
T ss_pred             CCCCCCCCCCCeeC--cccCchhCCHHHHHHHHHhcCCC
Confidence            48899999999999  88999999999999999999985

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.9e-08  Score=65.82  Aligned_cols=37  Identities=38%  Similarity=0.779  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|.|  +.|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ep2_A            2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGE   38 (46)
T ss_dssp             CSSSCSSCCCSEEC--SSSCCEESSHHHHHHHHHTTSSC
T ss_pred             CCCCCCCCCcCcCC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999986

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.8e-08  Score=65.83  Aligned_cols=31  Identities=39%  Similarity=0.575  Sum_probs=22.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A           13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777777777777777777777777776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.1e-08  Score=65.46  Aligned_cols=37  Identities=41%  Similarity=0.758  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytr_A            2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGE   38 (46)
T ss_dssp             CSSCCCSSCCTTCC--TTTCCCCSSHHHHHHHHTTTTTC
T ss_pred             CCCcCCCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCC
Confidence            58899999999999  88999999999999999999985

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=6.3e-09  Score=68.12  Aligned_cols=34  Identities=41%  Similarity=0.607  Sum_probs=25.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2en6_A           13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP--SSG   46 (46)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHHSSCCCSSS--CCC
T ss_pred             eECCCCCcccCchHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.3e-08  Score=66.65  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A           13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             eECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5666666666666666666666666666666

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.7e-08  Score=65.89  Aligned_cols=37  Identities=35%  Similarity=0.614  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2en8_A            2 SSGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGE   38 (46)
T ss_dssp             CCCCCCCCCSSEEC--TTTCCEESSHHHHHHHHTTTCCS
T ss_pred             CccccCCCCCCeEC--CCcCcccCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999986

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.7e-08  Score=65.85  Aligned_cols=37  Identities=41%  Similarity=0.724  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2epw_A            2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDD   38 (46)
T ss_dssp             CCCCCCCCCCSEEC--SSSCCEESSSHHHHHHHHHCCSC
T ss_pred             cCcccCCCCCCeeC--CCCCCccCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.3e-08  Score=65.76  Aligned_cols=35  Identities=43%  Similarity=0.834  Sum_probs=17.3

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |+++|+++++|+|  +.|++.|.+.+.|.+|+++|+|
T Consensus         3 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eoj_A            3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSG   37 (44)
T ss_dssp             SCCSSSSCCSCEE--TTTTEECSSHHHHHHHHTTSSS
T ss_pred             CccccCCCcCeeC--CCCCCccCCHHHHHHHHHHcCC
Confidence            4444555555555  4455555555555555554444

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.61  E-value=2e-08  Score=64.16  Aligned_cols=36  Identities=31%  Similarity=0.703  Sum_probs=22.6

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 H~~~H~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~   37 (42)
T 2epc_A            2 SSGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQS   37 (42)
T ss_dssp             CCSCCCSSCCEEC--SSSCCEESSHHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCeEC--CCCCcccCCHHHHHHHhhhcCCC
Confidence            4556666666666  55666666666666666666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=66.21  Aligned_cols=37  Identities=38%  Similarity=0.706  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emh_A            2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGE   38 (46)
T ss_dssp             CCCCSCSCCCSEEC--TTTCCEESSHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCcCC--CCCCchhCCHHHHHHHHHhcCCC
Confidence            58899999999999  88999999999999999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=8e-09  Score=67.60  Aligned_cols=34  Identities=32%  Similarity=0.611  Sum_probs=25.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2ysp_A           13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP--SSG   46 (46)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTSCSCCSSCC--SCC
T ss_pred             eECCCCCCccCCHHHHHHHHHhhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.8e-08  Score=65.81  Aligned_cols=37  Identities=46%  Similarity=0.826  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2eoe_A            2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGV   38 (46)
T ss_dssp             CCSSCCCCCCSSEE--TTTTEECSSHHHHHHHHGGGSCC
T ss_pred             CCCCCCCCCCCeEC--CCcChhhCCHHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999986

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=65.18  Aligned_cols=36  Identities=39%  Similarity=0.722  Sum_probs=34.0

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  ..|++.|.+.++|.+|+++|++|
T Consensus         1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   36 (44)
T 2emx_A            1 GSSGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEE   36 (44)
T ss_dssp             CCCCCSSCCCEEC--SSSSCEESSHHHHHHHHHHHTSS
T ss_pred             CCCCcCCCcCccC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            6789999999999  88999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.9e-08  Score=65.64  Aligned_cols=31  Identities=42%  Similarity=0.657  Sum_probs=23.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A           13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             eECCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            6777777777777777777777777777777

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.60  E-value=2.4e-08  Score=65.41  Aligned_cols=37  Identities=43%  Similarity=0.768  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ely_A            2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGE   38 (46)
T ss_dssp             CCCCCCCCCCSBCC--SSSCCCBSSTTHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCccc--CccCcccCCHHHHHHHHHHcCCC
Confidence            48899999999999  88999999999999999999985

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2e-08  Score=65.67  Aligned_cols=37  Identities=43%  Similarity=0.744  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ene_A            2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGE   38 (46)
T ss_dssp             CCCSSCCCSSSEEC--SSSCCEESSHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCCCeEC--CCCCchhCChHHHHHHHhhcCCC
Confidence            58899999999999  88999999999999999999985

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.5e-08  Score=65.17  Aligned_cols=37  Identities=43%  Similarity=0.725  Sum_probs=34.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|++|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2epz_A            2 SSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGE   38 (46)
T ss_dssp             CCCSSCCCCCSBCC--TTTCCCBSSHHHHHHHHTTTTTC
T ss_pred             CCCCCcCCCCCeEC--CCCCceeCCHHHHHHHHHHhCCC
Confidence            48899999999999  88999999999999999999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.8e-08  Score=65.75  Aligned_cols=37  Identities=41%  Similarity=0.801  Sum_probs=23.4

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ep1_A            2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSSCC--SSSCCCCSSHHHHHHHHGGGSSS
T ss_pred             ccccCCCCCCCcCC--CCCCchhCCHHHHHHHHHHhCCC
Confidence            35566666666666  55666666666666666666653

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2e-08  Score=65.71  Aligned_cols=37  Identities=43%  Similarity=0.736  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2eq0_A            2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGE   38 (46)
T ss_dssp             CCCCCTTCCCCEEC--TTTCCEESSHHHHHHHHTTTCCC
T ss_pred             CCCcCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999986

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.6e-08  Score=65.23  Aligned_cols=31  Identities=35%  Similarity=0.498  Sum_probs=23.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A           13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             EECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            6777777777777777777777777777777

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.2e-08  Score=65.45  Aligned_cols=37  Identities=41%  Similarity=0.785  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytd_A            2 SSGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGY   38 (46)
T ss_dssp             CCCCCSCCCCSEEC--SSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CCccccCCCcCeEC--CCCCCeeCChHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999986

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.59  E-value=2.4e-08  Score=65.15  Aligned_cols=37  Identities=38%  Similarity=0.662  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em9_A            2 SSGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGE   38 (46)
T ss_dssp             CSCCSCCCCCSEEC--SSSCCEESSHHHHHHHGGGGTSC
T ss_pred             CCCCCCCCCcCeEC--CccccccCChHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.5e-08  Score=65.03  Aligned_cols=37  Identities=41%  Similarity=0.679  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eme_A            2 SSGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGE   38 (46)
T ss_dssp             CCCCTTCCCCSEEC--SSSCCEESSHHHHHHHHGGGCCC
T ss_pred             CCCCCCCCCCCeEC--CCCChhhCCHHHHHHHHHhcCCC
Confidence            68899999999999  88999999999999999999985

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.59  E-value=2.5e-08  Score=71.30  Aligned_cols=53  Identities=25%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             CCCcCCc--cCcccCChHHHHHhhhhcccCCCcccccCccccCCCC--CCCCCCcchhhhchhhhc
Q psy16225        196 TPGPRKT--CGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPR--NGRPFKAKYKLVNHIRVH  257 (290)
Q Consensus       196 ~~~~C~~--CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~--CgksF~sks~L~~H~rvH  257 (290)
                      ++|.|..  |++.|.....|.+|+++ |.++++        |.|..  |++.|..+..|..|+++|
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKP--------FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHH-HSSSCS--------EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHh-cCCCCC--------ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4455544  55555555555555554 333322        44532  555555555555555443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.7e-08  Score=64.28  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .++++|||+|..+.|+|+|.+.++|++|+++|+||
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46789999993334999999999999999999986

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.8e-08  Score=65.93  Aligned_cols=37  Identities=41%  Similarity=0.730  Sum_probs=25.2

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2enf_A            2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCSCBC--SSSCCBCSSHHHHHHHHTTTTTS
T ss_pred             CCCcCCCCCcCeEC--CCCCcccCCHHHHHHHHHhhCCC
Confidence            46666777777777  56777777777777777776654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=4.5e-08  Score=66.64  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=35.4

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCc
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKA  246 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~s  246 (290)
                      +.++++|.|++|++.|.....|.+|++..|.++++        |.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~--------~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP--------HKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC--------CCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC--------ccCCCCCCCCCC
Confidence            44567888888888888888888888622666555        788888888865

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.2e-08  Score=65.48  Aligned_cols=37  Identities=41%  Similarity=0.729  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytk_A            2 SSGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGE   38 (46)
T ss_dssp             CCCCCSSSSCSEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCCEeC--CcCCCccCCHHHHHHHHHHHCCC
Confidence            58899999999999  88999999999999999999985

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.6e-08  Score=65.09  Aligned_cols=37  Identities=38%  Similarity=0.621  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em7_A            2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGE   38 (46)
T ss_dssp             CCCCSSSCCCSEEC--SSSCCEESCHHHHHHHGGGGTTC
T ss_pred             CCCCCCCCCcCccC--CCccchhCCHHHHHHHHHHhCCC
Confidence            48899999999999  88999999999999999999986

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.1e-08  Score=67.13  Aligned_cols=34  Identities=35%  Similarity=0.444  Sum_probs=24.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~C   46 (46)
T 2em8_A           13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHCCCCCCS--CCC
T ss_pred             eECcccCchhCCHHHHHHHHHHHcCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.6e-08  Score=66.11  Aligned_cols=37  Identities=43%  Similarity=0.785  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yu8_A            2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGG   38 (46)
T ss_dssp             CCCCCCCCCSSEEC--SSSCCEESSSHHHHHHTHHHHSC
T ss_pred             CcCcCCCCCCCeEC--CcCCchhCCHHHHHHHHHhcCCC
Confidence            58899999999999  88999999999999999999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3e-08  Score=64.94  Aligned_cols=37  Identities=41%  Similarity=0.732  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytq_A            2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGE   38 (46)
T ss_dssp             CCSSCSSCCCSCBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCcCcCCCCCcCC--CccChhhCChHHHHHHHHHhCCC
Confidence            48899999999999  88999999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=1.7e-08  Score=66.90  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=30.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGK  272 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgK  272 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  ..|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C~k   48 (48)
T 2epr_A           13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSS--GPSSG   48 (48)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCCS--CCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHhcCCCCCccC--CCCCC
Confidence            7788888888888888888888888888888  77876

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.6e-08  Score=65.29  Aligned_cols=31  Identities=35%  Similarity=0.618  Sum_probs=25.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|.+|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A           13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             cCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            6788888888888888888888888888877

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.2e-08  Score=65.55  Aligned_cols=37  Identities=41%  Similarity=0.768  Sum_probs=25.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|.|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yth_A            2 SSGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGE   38 (46)
T ss_dssp             CCCSCCCCSSSBCC--SSSCCCBSSHHHHHHHGGGGTTC
T ss_pred             CcccCCCCCcCCCC--CCCCcccCCHHHHHHHHHhcCCC
Confidence            46667777777777  66777777777777777777664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2e-08  Score=65.64  Aligned_cols=37  Identities=41%  Similarity=0.741  Sum_probs=24.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2yti_A            2 SSGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGE   38 (46)
T ss_dssp             CCCCCCSCCCTTCC--SSSCCCCSSHHHHHHHHTTTSCS
T ss_pred             CCCcCCCCCcCeEC--CCCCcccCChhHHHHHhHhcCCC
Confidence            35666666666666  55666666666666666666653

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.8e-08  Score=65.96  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=22.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A           13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             eECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5677777777777777777777777777766

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.1e-08  Score=65.44  Aligned_cols=31  Identities=39%  Similarity=0.627  Sum_probs=22.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A           13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             ccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            5677777777777777777777777777776

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.3e-08  Score=65.39  Aligned_cols=37  Identities=41%  Similarity=0.760  Sum_probs=35.1

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2en1_A            2 SSGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGE   38 (46)
T ss_dssp             CSTTCCCCCCSEEE--TTTTEEESSHHHHHHHGGGGSCC
T ss_pred             CcccCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            68999999999999  88999999999999999999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.1e-08  Score=65.71  Aligned_cols=37  Identities=38%  Similarity=0.668  Sum_probs=23.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em6_A            2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGE   38 (46)
T ss_dssp             CCCSCCCCCCCCBC--SSSCCBCSSHHHHHHHHTTTSSS
T ss_pred             CCccccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            35666666666666  55666666666666666666654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.5e-08  Score=66.38  Aligned_cols=31  Identities=39%  Similarity=0.724  Sum_probs=22.2

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em2_A           13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHCCCCSSCS
T ss_pred             EECCcCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5677777777777777777777777777777

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.4e-08  Score=65.36  Aligned_cols=37  Identities=27%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.++|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em5_A            2 SSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGE   38 (46)
T ss_dssp             CCCCCCCCSCSEEC--SSSCCEESSHHHHHHHHTTTSCS
T ss_pred             CCcCCCCCCCCeEC--CcCCCccCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.3e-08  Score=63.89  Aligned_cols=36  Identities=31%  Similarity=0.641  Sum_probs=27.0

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   36 (42)
T 2yte_A            1 GSSGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVK   36 (42)
T ss_dssp             CCSSSCSCCSCBC--TTTCCBCSSHHHHHHHHHHTSCC
T ss_pred             CCcCcCCCCCeEC--CCCCCccCCHHHHHHHHHHhCCC
Confidence            5667777777777  66777777777777777777764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.3e-08  Score=65.40  Aligned_cols=37  Identities=46%  Similarity=0.801  Sum_probs=23.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emg_A            2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGE   38 (46)
T ss_dssp             CCCCCCCSCCSCBC--TTTCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCCCCCCCCCCEEC--CccCcccCCHHHHHHHHHHhCCC
Confidence            35666666666666  55666666666666666666654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.2e-08  Score=64.76  Aligned_cols=31  Identities=35%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A           13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             cCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6788888888888888888888888888877

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.3e-08  Score=65.41  Aligned_cols=37  Identities=41%  Similarity=0.697  Sum_probs=24.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq1_A            2 SSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGE   38 (46)
T ss_dssp             CCCCCCCCSCCCCC--TTTTCCCSSHHHHHHHHTTTCCS
T ss_pred             CcccccCCCCCeEC--CcCChhhCCHHHHHHHHHHhCCC
Confidence            46666666666666  56777776666676676666654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=2.9e-08  Score=64.96  Aligned_cols=37  Identities=41%  Similarity=0.699  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em2_A            2 SSGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGE   38 (46)
T ss_dssp             CCCCSCCCCCSEEC--SSSCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCCEEC--CcCCchhCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.57  E-value=6.8e-09  Score=70.73  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             cccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcc
Q psy16225        205 KMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       205 KsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf  263 (290)
                      |.|.....|..|+++ |.++.+        |.|.+|++.|..+..|..|+++|+++++|
T Consensus         4 k~~~~~~~l~~h~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSR-SQSEQP--------ATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHH-HTSSCC--------EECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHh-cCCCCC--------ccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            455555556666665 444433        56666666666666666666666666665

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.57  E-value=3.1e-08  Score=64.83  Aligned_cols=37  Identities=30%  Similarity=0.585  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2el6_A            2 SSGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTRE   38 (46)
T ss_dssp             CSCCSSCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCS
T ss_pred             CCCCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            47899999999999  88999999999999999999985

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.5e-08  Score=66.30  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=19.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A           13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             EECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             eeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5566666666666666666666666666655

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.5e-08  Score=61.96  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=32.0

Q ss_pred             hhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        254 IRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       254 ~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         1 ~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            1 GSSGSSGRSYSC--PVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCCCEE--TTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCCcCC--CCCCCccCCHHHHHHHHHHHcCC
Confidence            367899999999  88999999999999999999986

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.1e-08  Score=64.68  Aligned_cols=37  Identities=43%  Similarity=0.692  Sum_probs=29.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (44)
T 2en7_A            2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGE   38 (44)
T ss_dssp             CSCCCSSSSSSSCC--TTTCCCCSSHHHHHHHHTTTCCS
T ss_pred             CCCcCCCCCcCeEC--CCCCCccCCHHHHHHHhhhcCCC
Confidence            47777888888888  67888888888888888888765

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.6e-08  Score=66.21  Aligned_cols=37  Identities=41%  Similarity=0.742  Sum_probs=26.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2ytp_A            2 SSGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGE   38 (46)
T ss_dssp             CCCCSSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccCcCCCCCeEC--CcCCcccCCHHHHHHHHHHhCCC
Confidence            46667777777777  66777777777777777777664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.3e-08  Score=65.29  Aligned_cols=31  Identities=32%  Similarity=0.593  Sum_probs=22.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A           13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             SEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             eECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777777777777777777777777777

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.7e-08  Score=65.10  Aligned_cols=36  Identities=36%  Similarity=0.656  Sum_probs=25.1

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         3 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eoh_A            3 SGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGE   38 (46)
T ss_dssp             CCCSCCCSCSCCC--SSSCCCCSSHHHHHHHHHHCSSC
T ss_pred             CCCCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCC
Confidence            5666777777777  66777777777777777777654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.6e-08  Score=63.81  Aligned_cols=31  Identities=32%  Similarity=0.542  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             BCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             EECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            7888888888888888888888888888877

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.9e-08  Score=65.71  Aligned_cols=37  Identities=41%  Similarity=0.726  Sum_probs=25.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yts_A            2 SSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGE   38 (46)
T ss_dssp             CCSCCCCSCCSEEC--SSSCCEESSHHHHHHHGGGTSSC
T ss_pred             CCCCCCCCCcCEEC--CCCChhhCChHHHHHHHHhcCCC
Confidence            46667777777777  66777777777777777777654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.3e-08  Score=64.60  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yso_A            2 SSGSSGSREKSHQC--RECGEIFFQYVSLIEHQVLHMGQ   38 (46)
T ss_dssp             CCSCCSSCCCCEEC--TTTCCEESSHHHHHHHHHHHSCC
T ss_pred             CcccccCCCCCEEc--cccChhhCCHHHHHHHHHHhCCC
Confidence            58899999999999  88999999999999999999985

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.4e-08  Score=64.50  Aligned_cols=37  Identities=35%  Similarity=0.639  Sum_probs=34.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2enc_A            2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGE   38 (46)
T ss_dssp             CCSSCCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCS
T ss_pred             CCCCCCCCCCCcCC--CCCCCcCCChHHHHHHHHHhCCC
Confidence            47899999999999  88999999999999999999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.55  E-value=3.4e-09  Score=74.70  Aligned_cols=54  Identities=15%  Similarity=0.140  Sum_probs=38.9

Q ss_pred             HHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHH
Q psy16225        214 VTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLK  281 (290)
Q Consensus       214 ~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~  281 (290)
                      ..|+++ |.++.+        |.|++|++.|.....|.   ++|+++++|+|  +.|++.|....++.
T Consensus         3 ~~h~~~-H~~~k~--------~~C~~C~k~F~~~~~l~---~~H~~~k~~~C--~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERD-STNRAS--------FKCPVCSSTFTDLEANQ---LFDPMTGTFRC--TFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSS-CCSSSE--------EECSSSCCEEEHHHHHH---HEETTTTEEBC--SSSCCBCEECTTCS
T ss_pred             hhHHHH-cCCCCC--------ccCCCCCchhccHHHhH---hhcCCCCCEEC--CCCCCccccCcccc
Confidence            456666 555554        77888888888777775   77888888888  77888887766543

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.1e-08  Score=64.95  Aligned_cols=37  Identities=38%  Similarity=0.676  Sum_probs=34.6

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytm_A            2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQ   38 (46)
T ss_dssp             CSCCCCSSCCSSSB--TTTTBCCSSHHHHHHHHHHHHSC
T ss_pred             CCCcCCCCCCCcCC--CCCCchhCCHHHHHHHHHHcCCC
Confidence            47889999999999  88999999999999999999875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.55  E-value=2e-08  Score=64.27  Aligned_cols=36  Identities=39%  Similarity=0.783  Sum_probs=28.1

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  +.|++.|.+.++|.+|+++|+||
T Consensus         1 H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   36 (42)
T 2el5_A            1 GSSGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGE   36 (42)
T ss_dssp             CCSSSSSCCSEEC--SSSCCEESSHHHHHHHHGGGCCC
T ss_pred             CCCCCCCCCCccC--CCcChhhCCHHHHHHHHHhcCCC
Confidence            5677778888888  67888888888888888888765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.8e-08  Score=65.04  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCC-CCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTG-EKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtg-eKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|++ +++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A           13 FKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             EECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             EECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            5666666666666666666666666 666666

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=2.5e-08  Score=65.32  Aligned_cols=37  Identities=35%  Similarity=0.635  Sum_probs=24.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~h~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2en9_A            2 SSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGE   38 (46)
T ss_dssp             CCCSSCCSSCCCBC--TTTCCBCSSHHHHHHHHHHHTSS
T ss_pred             CCCCCCCCCCCEEC--CccCcccCCHHHHHHHHHHcCCC
Confidence            35666666677777  56777777777777777666654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=2.2e-08  Score=65.48  Aligned_cols=37  Identities=41%  Similarity=0.714  Sum_probs=35.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytg_A            2 SSGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSEEC--TTTCCEESSSHHHHTTGGGGSSC
T ss_pred             CCCCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            68899999999999  88999999999999999999985

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.9e-08  Score=65.61  Aligned_cols=37  Identities=46%  Similarity=0.768  Sum_probs=26.0

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytf_A            2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGE   38 (46)
T ss_dssp             CCCCSSCCCCSEEC--SSSCCEESSHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            46667777777777  66777777777777777777664

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.54  E-value=1.7e-08  Score=66.10  Aligned_cols=37  Identities=46%  Similarity=0.764  Sum_probs=27.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emj_A            2 SSGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCSEEC--SSSSCEESSHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCCEEC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            46777777777777  66777777777777777777764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=3.3e-08  Score=61.88  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             hhhcCCCCcccCCCCCCCCccCChHHHHHH-hhhcCCC
Q psy16225        254 IRVHTGEKPFPCPFPTCGKVFARSENLKIH-KRTHTEV  290 (290)
Q Consensus       254 ~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H-~rtHTGE  290 (290)
                      +++|++++||+|  +.|++.|.+.+.|.+| +++|+||
T Consensus         1 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYC--SQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEEC--SSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeEC--CCCCcccCCHHHHHHHHHHHccCc
Confidence            367999999999  8899999999999999 9999986

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=3.4e-08  Score=64.75  Aligned_cols=36  Identities=39%  Similarity=0.676  Sum_probs=21.2

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         3 h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eon_A            3 SGSSGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGE   38 (46)
T ss_dssp             CSSSCSSCCSCBC--SSSCCBCSSHHHHHHHTTTTTSC
T ss_pred             CCCCCCCCcccCC--CCCCcccCcHHHHHHHHHhcCCC
Confidence            4555666666666  55666666666666666666543

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=4.6e-08  Score=63.38  Aligned_cols=31  Identities=26%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A           13 SECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            5666666666666666666666666666666

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.6e-08  Score=65.09  Aligned_cols=37  Identities=38%  Similarity=0.706  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ysp_A            2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSEEE--TTTTEEESCHHHHHHHHTTSCSC
T ss_pred             CCCcCCCCCCCeEC--CCCCCccCCHHHHHHHHHhhCCC
Confidence            58899999999999  88999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.1e-08  Score=65.42  Aligned_cols=37  Identities=46%  Similarity=0.783  Sum_probs=25.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yrj_A            2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCCEEC--SSSCCEESSHHHHHHHHTTTSSC
T ss_pred             CCccCCCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCC
Confidence            46667777777777  66777777777777777777654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.7e-08  Score=63.91  Aligned_cols=37  Identities=38%  Similarity=0.627  Sum_probs=34.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhh-hcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r-tHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+.+.|.+|++ +|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~   39 (47)
T 2epx_A            2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGE   39 (47)
T ss_dssp             CCCCCCCCCCSBCC--SSSCCCBSSHHHHHHHHTTTTTTS
T ss_pred             ccccccCCCCCEEC--CccCchhCChHHHHHHhHhhcCCC
Confidence            58899999999999  889999999999999999 99985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2e-08  Score=65.54  Aligned_cols=37  Identities=41%  Similarity=0.739  Sum_probs=27.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eow_A            2 SSGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGE   38 (46)
T ss_dssp             CCCCCSCCCCCEEC--TTSCCEESSHHHHHHHHHHHCCC
T ss_pred             CccCCCCCCCCeec--cccCChhcCHHHHHHHHHHcCCC
Confidence            46677777777777  66777777777777777777764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.9e-08  Score=64.87  Aligned_cols=37  Identities=41%  Similarity=0.741  Sum_probs=34.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+.+.|.+|+++|++|
T Consensus         2 ~h~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2en6_A            2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGE   38 (46)
T ss_dssp             CCSCCCCSSCCEEE--TTTTEEESSHHHHHHHHHHHSSC
T ss_pred             CCCCccCCCcCeEC--CCCCcccCchHHHHHHHHHcCCC
Confidence            58899999999999  88999999999999999999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.8e-08  Score=65.31  Aligned_cols=31  Identities=23%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A           13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             EEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             eECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5666666666666666666666666666665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2e-08  Score=65.64  Aligned_cols=37  Identities=38%  Similarity=0.706  Sum_probs=26.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2em3_A            2 SSGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSEEC--SSSCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCcCeEC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            46677777777777  66777777777777777777764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.7e-08  Score=65.02  Aligned_cols=37  Identities=32%  Similarity=0.680  Sum_probs=27.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2emi_A            2 SSGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGE   38 (46)
T ss_dssp             CCCCSCSSCCCEEC--SSSCCEESSHHHHHHHHGGGCSC
T ss_pred             CCCcccCCCCCCCC--CCCCcccCCHHHHHHHHhHhCCC
Confidence            46677777777777  66777777777777777777764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.3e-08  Score=65.46  Aligned_cols=37  Identities=35%  Similarity=0.708  Sum_probs=29.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+...|.+|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em4_A            2 SSGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGE   38 (46)
T ss_dssp             CSCCCCCCSSSEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred             CCccccCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCC
Confidence            47777888888888  67888888888888888888764

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=4.6e-08  Score=63.99  Aligned_cols=36  Identities=36%  Similarity=0.685  Sum_probs=24.2

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         3 h~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2enh_A            3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGE   38 (46)
T ss_dssp             CCCCCCCSSSCBC--TTTCCBCSSSHHHHHHGGGSCCS
T ss_pred             CCCCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCC
Confidence            5566666677777  56777777777777777666654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2.5e-08  Score=64.55  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSS-GAGENP--------FKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCC-CSCCCS--------EECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccc-cCCCCC--------eECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            36666 555554        7888888888888888888888888888887

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.1e-08  Score=65.44  Aligned_cols=37  Identities=41%  Similarity=0.739  Sum_probs=26.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eor_A            2 SSGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGE   38 (46)
T ss_dssp             CSSSSSSCCCSEEC--TTTCCEESSHHHHHHHHHHHHSC
T ss_pred             CCCcCcCCCcCccC--CCCCCCcCCHHHHHHHHHhcCCC
Confidence            46677777777777  66777777777777777777664

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.5e-08  Score=64.35  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             HhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        215 THLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       215 ~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      +|+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         2 ~H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSS-GTGEKP--------YECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSC-CSCCCS--------EECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccC-CCCCCC--------eECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            35665 555554        7888888888888888888888888888887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.50  E-value=2.7e-08  Score=63.51  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        12 ~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            6788888888888888888888888888877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=4.4e-08  Score=64.09  Aligned_cols=37  Identities=38%  Similarity=0.723  Sum_probs=34.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em8_A            2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGE   38 (46)
T ss_dssp             CCCCCCCSCCSEEC--SSSCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCeEC--cccCchhCCHHHHHHHHHHHcCC
Confidence            47889999999999  88999999999999999999875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=3e-08  Score=64.16  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=31.3

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+...|..|+++|+||
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (44)
T 2emb_A            2 SSGSSGHTRKRYEC--SKCQATFNLRKHLIQHQKTHAAK   38 (44)
T ss_dssp             CCCSCCCCCSSEEC--TTTCCEESCHHHHHHHGGGGCCC
T ss_pred             CcccccCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCC
Confidence            57888888888888  77888888888888888888875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=2.4e-08  Score=65.36  Aligned_cols=37  Identities=43%  Similarity=0.836  Sum_probs=29.2

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yto_A            2 SSGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGE   38 (46)
T ss_dssp             CCCCCCCSCCCEEC--SSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CcccccCCCCCEEC--cccCCccCCHhHHHHHHHHcCCC
Confidence            57777888888888  67888888888888888888764

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=3.7e-08  Score=64.48  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=24.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ytt_A           13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP--SSG   46 (46)
T ss_dssp             TCCSSSCCCCSSHHHHHHHHTHHHHCCCCSC--CCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHHcCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=3.8e-08  Score=64.28  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=25.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|  +.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   46 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP--SSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSSCCCSC--CCC
T ss_pred             eeCcccCcccCChHHHHHHHHHhCCCCCCCC--CCC
Confidence            6777777777777777777777777777777  555

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=4.7e-08  Score=63.33  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++|+++++|.|  ..|++.|.+...|.+|+++|++|
T Consensus         3 h~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (44)
T 2eou_A            3 SGSSGAAKTTSEC--QECGKIFRHSSLLIEHQALHAGE   38 (44)
T ss_dssp             CSCSCSSSCCCCC--TTTCCCCSSHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCcCeEC--CCCCcccCCHHHHHHHHHHHCCC
Confidence            5667777777777  67777777777777777777764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=2.4e-08  Score=63.88  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           12 YKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             EECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             EeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            6788888888888888888888888888877

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.48  E-value=8.4e-08  Score=58.51  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=30.0

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++++|+|  ..|++.|.+.++|.+|+++|++|
T Consensus         1 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            1 GSSGSSGYVC--ALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCCSEEC--SSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCCeEC--CCCcchhCCHHHHHHHHHHHcCC
Confidence            4788999999  88999999999999999999986

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=4.5e-08  Score=63.74  Aligned_cols=35  Identities=34%  Similarity=0.598  Sum_probs=25.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCG  271 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~Cg  271 (290)
                      |.|.+|++.|..+..|..|+++|+++++|.|  +.||
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~cg   45 (45)
T 2epq_A           11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG--PSSG   45 (45)
T ss_dssp             SEETTTTEECSCHHHHHHHHHHHSCCCCCCC--CCCC
T ss_pred             CcCCCCCcccCCHHHHHHHHHHccCCCCCCC--cCCC
Confidence            6677777777777777777777777777777  5565

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.48  E-value=8.8e-08  Score=58.62  Aligned_cols=33  Identities=30%  Similarity=0.641  Sum_probs=30.1

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++++|+|  ..|++.|.+.+.|.+|+++|++|
T Consensus         1 ~H~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            1 GSSGKRPFVC--RICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCcCeeC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            4788999999  88999999999999999999986

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=2.9e-08  Score=64.99  Aligned_cols=37  Identities=38%  Similarity=0.688  Sum_probs=25.4

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++|+++++|+|  +.|++.|.+..+|.+|+++|++|
T Consensus         2 ~h~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emz_A            2 SSGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSRE   38 (46)
T ss_dssp             CCCSCSSCCCSCCC--SSSCCCCSSHHHHHHHHHHHHHT
T ss_pred             CCCcCCCCCCCeEC--CCCCcccCCHHHHHHHHHHhCCC
Confidence            46666777777777  66777777777777777776653

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=3.4e-08  Score=63.83  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=31.3

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |+++ |.++++        |.|++|++.|..+..|..|+++|+++++|+|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSS-GTGENP--------YECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCS-SSSCCS--------CEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             Cccc-cCCCcC--------eeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            5565 555544        6788888888888888888888888888887

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=2.2e-08  Score=65.53  Aligned_cols=37  Identities=43%  Similarity=0.745  Sum_probs=27.7

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eoz_A            2 SSGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQE   38 (46)
T ss_dssp             CSCCCCSSCCSEEE--TTTTEEESSHHHHHHHHHHHSSC
T ss_pred             CccccCCCCCCeEC--cccChhhCCHHHHHHHHHHhCCC
Confidence            46777777777777  66777777777777777777764

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=3.3e-08  Score=64.47  Aligned_cols=37  Identities=38%  Similarity=0.689  Sum_probs=24.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|.|  +.|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq3_A            2 SSGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGK   38 (46)
T ss_dssp             CCCCSSCCCCSSEE--TTTTEECSSHHHHHHHHTTSCCC
T ss_pred             CcccCCCCCCCeEC--CCCChhhCCHHHHHHHHHHhCCC
Confidence            45666666666666  56777776666677776666654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=2.6e-08  Score=64.45  Aligned_cols=37  Identities=32%  Similarity=0.563  Sum_probs=29.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (44)
T 2eox_A            2 SSGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRK   38 (44)
T ss_dssp             CCCCCCCCCCCEEE--TTTTEEESSSHHHHTTHHHHCCC
T ss_pred             CCCcCCCCCCCeEC--cccCcccCCHHHHHHHHHHhCCC
Confidence            57778888888888  67888888888888888888775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=5.6e-08  Score=63.58  Aligned_cols=36  Identities=36%  Similarity=0.533  Sum_probs=26.9

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      .|+++|+++++|+|  ..|++.|.+...|.+|+++|++
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A            2 SSGSSGQKEKCFKC--NKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CCCCCCCCSCCEEC--SSSCCEESSSHHHHHHHTTCCS
T ss_pred             CCccccCCCCCEEC--cCCCCcCCCHHHHHHHHHHcCC
Confidence            36677777777777  6677777777777777777776

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=7.7e-08  Score=59.74  Aligned_cols=34  Identities=24%  Similarity=0.527  Sum_probs=31.5

Q ss_pred             hhcCCCCcccCCCCCCCCccCCh-HHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARS-ENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~-s~L~~H~rtHTGE  290 (290)
                      ++|+++++|+|  +.|++.|.+. +.|.+|+++|+||
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKC--PYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEEC--SSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeEC--CCCChhhccCHHHHHHHHHhcCCC
Confidence            57899999999  8899999999 9999999999986

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=61.95  Aligned_cols=31  Identities=35%  Similarity=0.614  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A           13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             cCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            6788888888888888888888888888887

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.44  E-value=1.1e-07  Score=59.50  Aligned_cols=35  Identities=31%  Similarity=0.554  Sum_probs=30.5

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|+++++|.|.++.|++.|.+.+.|.+|+++|+||
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            37889999994336999999999999999999986

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.2e-07  Score=58.48  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +.|+++++|+|  ..|++.|.+.+.|.+|+++|++|
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDC--HICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeEC--CCCCCccCCHHHHHHHHHHhcCC
Confidence            35788999999  88999999999999999999986

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=58.15  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +.|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKC--SLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEEC--SSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccC--CCCCchhCCHHHHHHHHHHhccC
Confidence            35889999999  88999999999999999999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.9e-07  Score=57.32  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=30.5

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++++|.|  ..|++.|.+...|.+|+++|++|
T Consensus         3 ~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLC--DMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBC--TTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeec--CcCCCCcCchHHHHHHHHHhcCC
Confidence            5788999999  88999999999999999999986

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.5e-07  Score=59.92  Aligned_cols=31  Identities=35%  Similarity=0.584  Sum_probs=15.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|++|++.|..+..|..|+++|+++++|+|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           11 YECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             EECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             eECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4455555555555555555555555555544

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=6.5e-08  Score=62.76  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             hhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        216 HLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       216 H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |+++ |.++++        |.|.+|++.|..+..|..|+++|+++++|.|
T Consensus         3 H~~~-H~~~k~--------~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSS-GSGEKP--------YECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCC-CCCCCS--------EECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcc-cCCCcC--------eECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            5565 555544        7788888888888888888888888888876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=3.1e-08  Score=64.70  Aligned_cols=37  Identities=41%  Similarity=0.638  Sum_probs=28.5

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|+++++|+|  ..|++.|.+...|.+|+++|++|
T Consensus         2 ~H~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2en3_A            2 SSGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERT   38 (46)
T ss_dssp             CCCCCSCCCCSEEC--SSSCCEESSSHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCeeC--cccChhhCCHHHHHHHHHHhCCC
Confidence            47777888888888  67888888888888888877654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.5e-07  Score=57.82  Aligned_cols=33  Identities=36%  Similarity=0.672  Sum_probs=30.8

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++++|+|  ..|++.|.....|.+|+++|++|
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKC--PQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEEC--SSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCC--CCCCcccCCHHHHHHHHHHccCC
Confidence            5888999999  88999999999999999999986

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.2e-08  Score=75.24  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=24.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      +.|..|++.|. ...|..|+ .|.++++|.|  +.|++.|.. ..|..|+++|++
T Consensus        18 ~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C--~~C~~~~~~-~~l~~H~~~c~~   67 (75)
T 2d9k_A           18 AVCQHCDLELS-ILKLKEHE-DYCGARTELC--GNCGRNVLV-KDLKTHPEVCGR   67 (75)
T ss_dssp             EECSSSCCEEC-HHHHHHHH-HHHHHCEEEC--SSSCCEEET-TGGGTHHHHBTT
T ss_pred             cCCcccChHhh-HHHHHHHH-hHcCCCceEc--ccCCCcCcH-HHHHHHHHHccC
Confidence            44555555552 44455555 4555555555  445554442 445555555544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=62.73  Aligned_cols=33  Identities=27%  Similarity=0.609  Sum_probs=28.2

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhh-hcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~r-tHTGE  290 (290)
                      +|+++|+|.|  ..|+|.|.+..+|.+|++ +|+||
T Consensus         1 ~Ht~~kp~~C--~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYAC--DICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEEC--TTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEEC--CCcCcccCCHHHHHHHhhhhcCCC
Confidence            5788999999  789999999999999999 89875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.1e-07  Score=61.92  Aligned_cols=31  Identities=48%  Similarity=0.769  Sum_probs=23.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A           13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             ccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            6677777777777777777777777777777

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.2e-07  Score=61.99  Aligned_cols=33  Identities=36%  Similarity=0.723  Sum_probs=17.0

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ++|+++++|+|  ..|++.|.+..+|.+|+++|++
T Consensus         5 ~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2eom_A            5 SSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTG   37 (46)
T ss_dssp             CCCCCCSSCCC--SSSCCCCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCCCcCC--CCCCCeeCChHHHHHHHHHhCC
Confidence            44455555555  4455555555555555555544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=2.4e-07  Score=61.19  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGR  242 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cgk  242 (290)
                      +..+++|.|++|++.|.....|.+|+++ |.++++        |.|++|+|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~--------~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKP--------YSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG-SCSCCC--------CCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHh-cCCCCC--------ccCCCCCC
Confidence            4456788899999999988889999888 555554        78888875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=2.8e-07  Score=59.89  Aligned_cols=41  Identities=22%  Similarity=0.354  Sum_probs=35.2

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNG  241 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~Cg  241 (290)
                      |.++++|.|++|++.|.....|.+|+++ |.++++        +.|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVG--------KSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHH-HSCCCC--------CCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHH-ccCCCC--------CCCcCCC
Confidence            6778999999999999999999999998 556555        7888886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.8e-07  Score=60.98  Aligned_cols=36  Identities=39%  Similarity=0.690  Sum_probs=33.3

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         3 ~~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ep0_A            3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGE   38 (46)
T ss_dssp             CCCSSTTCCSEEC--SSSCCEESSHHHHHHHHTTTSSS
T ss_pred             CCCCCCCCCCeeC--cccCcccCChHHHHHHHHHhCCC
Confidence            4678999999999  88999999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.7e-07  Score=59.55  Aligned_cols=34  Identities=32%  Similarity=0.746  Sum_probs=25.1

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|+++++|+|  +.|++.|.+...|.+|+++|++|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   36 (41)
T 2ept_A            3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGS   36 (41)
T ss_dssp             SSCCCCCCEEC--SSSCCEESSHHHHHHHGGGCCCC
T ss_pred             CccCCCCCeEC--CCCCCCcCCHHHHHHHHHHhCCC
Confidence            45677777777  66777777777777777777764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=2.3e-07  Score=59.87  Aligned_cols=31  Identities=19%  Similarity=0.170  Sum_probs=22.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A           11 FFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             EECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            6677777777777777777777777777777

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=3e-07  Score=67.64  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=13.0

Q ss_pred             CCCCCCcchhhhchh-hhcCCCCcccC
Q psy16225        240 NGRPFKAKYKLVNHI-RVHTGEKPFPC  265 (290)
Q Consensus       240 CgksF~sks~L~~H~-rvHtgeKpf~C  265 (290)
                      |++.|..+++|.+|+ ++|+++|||.|
T Consensus        35 CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           35 CFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             CCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            555555555555554 34555555544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=3.1e-07  Score=59.26  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   36 (43)
T 2yrm_A            3 SGSSGNGAFFC--NECDCRFSEEASLKRHTLQTHSD   36 (43)
T ss_dssp             SCCSSSCCBCC--SSSCCCBSSHHHHHHHHHHHTCT
T ss_pred             cCcCCCCCEEC--CCCCCeeCChHHHHHHHHhhCCC
Confidence            57899999999  88999999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=9.7e-08  Score=62.11  Aligned_cols=35  Identities=46%  Similarity=0.768  Sum_probs=19.5

Q ss_pred             hhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        254 IRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       254 ~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~   38 (45)
T 2epu_A            4 GSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGE   38 (45)
T ss_dssp             CCCCCSCCSEEE--TTTTEEESSHHHHHHHHTTTSSC
T ss_pred             CCCCCCCcCccC--CCCCCccCChHHHHHHHHHhCCC
Confidence            344555555555  45555555555555555555543

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.7e-07  Score=61.41  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             cCCC--CCCCCCCcchhhhchhhhcCCCCcccCCCCCC
Q psy16225        235 DGCP--RNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTC  270 (290)
Q Consensus       235 ~~C~--~CgksF~sks~L~~H~rvHtgeKpf~C~~~~C  270 (290)
                      |.|.  .|++.|..+..|..|+++|+++++|+|  ..|
T Consensus        13 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C--~~C   48 (48)
T 2ent_A           13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP--SSG   48 (48)
T ss_dssp             EECCSSSCCCEESSHHHHHHHHTTSCCCCSCSS--CCC
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHhCCCCCCCC--CCC
Confidence            6676  677777777777777777777777777  555

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2e-07  Score=60.84  Aligned_cols=36  Identities=42%  Similarity=0.642  Sum_probs=32.9

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .+++|+++++|+|  ..|++.|.+..+|.+|+++|++|
T Consensus         3 ~~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ytt_A            3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTRE   38 (46)
T ss_dssp             CSSSCSCCCTTCC--SSSCCCCSSHHHHHHHHTHHHHC
T ss_pred             CCCCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            3578999999999  88999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.31  E-value=3.3e-07  Score=57.68  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=18.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C  265 (290)
                      |.|.+|++.|..+..|..|+++|+++++|.|
T Consensus         7 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            7 YTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5566666666666666666666666665554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=3e-07  Score=60.21  Aligned_cols=38  Identities=47%  Similarity=0.904  Sum_probs=33.7

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.++|+++++|+|.++.|++.|.+...|.+|+++|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   40 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV   40 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            56789999999993228999999999999999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=4.1e-07  Score=56.00  Aligned_cols=33  Identities=36%  Similarity=0.596  Sum_probs=30.1

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      .|.++++|+|  +.|++.|.....|.+|+++|++|
T Consensus         3 ~~~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEEC--TTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEEC--CCCCceeCCHHHHHHHHHHhCCC
Confidence            4678899999  78999999999999999999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=3.6e-07  Score=56.96  Aligned_cols=34  Identities=35%  Similarity=0.827  Sum_probs=26.5

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++++|+|.++.|++.|.+.++|.+|+++|++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   34 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCC
Confidence            5678888883226888888888888888888775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.25  E-value=1e-07  Score=67.03  Aligned_cols=56  Identities=5%  Similarity=-0.043  Sum_probs=43.7

Q ss_pred             hhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhch
Q psy16225        185 IKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNH  253 (290)
Q Consensus       185 ~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H  253 (290)
                      ..|+++ |.++++|.|++|++.|.....|.   ++ |.++.+        |.|++|++.|....++..+
T Consensus         3 ~~h~~~-H~~~k~~~C~~C~k~F~~~~~l~---~~-H~~~k~--------~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            3 ETDERD-STNRASFKCPVCSSTFTDLEANQ---LF-DPMTGT--------FRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCSSS-CCSSSEEECSSSCCEEEHHHHHH---HE-ETTTTE--------EBCSSSCCBCEECTTCSCC
T ss_pred             hhHHHH-cCCCCCccCCCCCchhccHHHhH---hh-cCCCCC--------EECCCCCCccccCcccccc
Confidence            345444 77889999999999999888876   55 666655        8999999999888776644

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=9.6e-07  Score=52.72  Aligned_cols=31  Identities=39%  Similarity=0.932  Sum_probs=25.7

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +++|.|.++.|++.|.+.+.|.+|+++|+||
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            5789993227999999999999999999886

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.17  E-value=1.9e-07  Score=70.93  Aligned_cols=55  Identities=16%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTG  259 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtg  259 (290)
                      |.++++|.|++|++.|.....|.+|+++ |.++++        |.|..|.    ....|..|.+.|.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp--------~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNI-HNEEFQ--------KRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHH-HHHHHH--------HHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHH-hCCCCC--------cccchhh----hHHHHHhhhccccc
Confidence            6678899999999999999999999998 555544        6776554    45567788888877

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.13  E-value=1.6e-06  Score=51.45  Aligned_cols=30  Identities=53%  Similarity=1.013  Sum_probs=24.3

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +||+|.++.|++.|.+.+.|..|+++|+||
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            578883337999999999999999998886

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.12  E-value=8.7e-07  Score=55.66  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+++++|+|  ..|++.|.+.+.|..|+++|+||
T Consensus         1 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~   32 (39)
T 1njq_A            1 XWPPRSYTC--SFCKREFRSAQALGGHMNVHRRD   32 (39)
T ss_dssp             -CCSSSEEC--TTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCCCCceEC--CCCCcccCCHHHHHHHHHHcCCC
Confidence            345556666  55666666666666666666553

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.12  E-value=1.6e-06  Score=62.67  Aligned_cols=31  Identities=32%  Similarity=0.649  Sum_probs=16.1

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      +.++|||+|  ..|+|.|.+...|.+|+++|++
T Consensus         8 ~~~ekpy~C--~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGILPC--GLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCC--TTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccCcCC--CCCCCccCCHHHHHhhhhhhCC
Confidence            344555555  4455555555555555555554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.11  E-value=1.8e-06  Score=52.54  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCccc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFP  264 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~  264 (290)
                      |.|++|++.|..+..|..|+++|+++++|.
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            566666666666666666666666666654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=4.3e-07  Score=66.70  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=53.6

Q ss_pred             CchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        182 RQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       182 ~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      ..|.+|+.+ +..++++.|..|++.|. ...|..|+ . +-++.+        +.|+.|++.|. ...|..|+++|.+++
T Consensus         3 ~~L~~H~~~-~c~~r~~~C~~C~~~~~-~~~L~~H~-~-~c~~~~--------~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEET-ECPLRLAVCQHCDLELS-ILKLKEHE-D-YCGART--------ELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCSCCCCC-CCCCCCEECSSSCCEEC-HHHHHHHH-H-HHHHCE--------EECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             hHHHhhCcc-cCCCcccCCcccChHhh-HHHHHHHH-h-HcCCCc--------eEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            456667554 66779999999999995 88999998 5 555554        78999999877 588999999998765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.10  E-value=1.3e-06  Score=53.20  Aligned_cols=28  Identities=39%  Similarity=0.727  Sum_probs=17.3

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|  +.|++.|.+.++|..|+++|+||
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~~~H~~~   28 (33)
T 1rim_A            1 YKFAC--PECPKRFMRSDHLSKHITLHELL   28 (33)
T ss_dssp             CCCCC--SSSCCCCSSHHHHHHHHHHHTTT
T ss_pred             CcccC--CCCCchhCCHHHHHHHHHHhCCC
Confidence            35666  55666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=1.9e-06  Score=49.96  Aligned_cols=29  Identities=31%  Similarity=0.636  Sum_probs=25.3

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +++|.|  ..|++.|.....|..|+++|+||
T Consensus         1 ~k~~~C--~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQC--DYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHHhccC
Confidence            478899  77999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.05  E-value=3.1e-06  Score=48.85  Aligned_cols=28  Identities=46%  Similarity=0.880  Sum_probs=23.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|.|  ..|++.|.+.+.|..|+++|++|
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVC--EVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBC--TTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeEC--CCCCcccCCHHHHHHHHHHhcCC
Confidence            46888  77888888888888888888875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.04  E-value=2.3e-06  Score=49.25  Aligned_cols=28  Identities=36%  Similarity=0.854  Sum_probs=25.2

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      +++|+|  ..|++.|.+.+.|..|+++|+|
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSC--SVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEEC--SSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHhcCC
Confidence            578999  8899999999999999999986

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.04  E-value=2.2e-06  Score=49.63  Aligned_cols=28  Identities=39%  Similarity=0.764  Sum_probs=23.5

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||.|  +.|++.|...+.|..|+++|+||
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFAC--PECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEEC--SSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccC--CCCCchhCCHHHHHHHHHHhcCC
Confidence            57888  77888888888888888888875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.02  E-value=3.4e-06  Score=48.01  Aligned_cols=27  Identities=26%  Similarity=0.682  Sum_probs=22.1

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+|  ..|++.|.+.+.|.+|+++|+||
T Consensus         1 ~~~C--~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKC--GLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBC--SSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccC--CCCCCcCCCHHHHHHHHHHcCCC
Confidence            5788  77999999999999999998876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.99  E-value=1.4e-06  Score=52.55  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=25.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf  263 (290)
                      |.|++|++.|..+..|..|+++|+++++|
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            78888999999999999999999888876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=3.1e-06  Score=48.61  Aligned_cols=28  Identities=39%  Similarity=0.702  Sum_probs=22.9

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+|.|  +.|++.|.+...|..|+++|+||
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKC--PHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCC--SSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcC--CCCCcccCCHHHHHHHHHHhccC
Confidence            47888  77888888888888888888775

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.98  E-value=3.7e-06  Score=48.12  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=24.4

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      +++|+|  ..|++.|.+.+.|.+|+++|+
T Consensus         1 ek~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSC--SLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEEC--SSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccC--CCcChhhCCHHHHHHHHHHcc
Confidence            578999  889999999999999999885

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=3.4e-06  Score=48.56  Aligned_cols=28  Identities=46%  Similarity=0.814  Sum_probs=23.7

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|.|  ..|++.|.....|..|+++|+||
T Consensus         1 ~~~~C--~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKC--RECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEEC--TTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccC--CCCCCccCChhHHHHHHHHhcCC
Confidence            47888  77999999999999998888876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.93  E-value=3.2e-06  Score=48.67  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=24.2

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      ++||+|  +.|++.|.+.+.|.+|+++|+
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRC--PLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEE--TTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCC--CCCCcccCCHHHHHHHHHhcC
Confidence            578999  789999999999999999885

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.4e-06  Score=50.73  Aligned_cols=29  Identities=38%  Similarity=0.668  Sum_probs=22.5

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +++|+|  ..|++.|.+..+|..|+++|++|
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVC--IHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            467888  67888888888888888888765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.90  E-value=7.2e-06  Score=47.37  Aligned_cols=28  Identities=36%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|.|  ..|++.|...+.|..|+++|++|
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQC--QYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccC--CCCCCccCCHHHHHHHHHHHccC
Confidence            45777  66777777777777777777664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.89  E-value=6.7e-06  Score=47.81  Aligned_cols=28  Identities=29%  Similarity=0.686  Sum_probs=21.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHH-hhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIH-KRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H-~rtHTGE  290 (290)
                      ++|.|  ..|++.|.+.+.|.+| +++|+||
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYAC--GLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBC--TTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCC--cccCcccCChHHHHHHHHHHccCC
Confidence            46778  6788888888888888 6778775

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.11  E-value=1.7e-06  Score=50.27  Aligned_cols=28  Identities=43%  Similarity=0.803  Sum_probs=20.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ++|+|  ..|++.|.+.++|..|+++|+||
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQC--VMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            46777  66777777777777777777764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=3.4e-06  Score=51.96  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=17.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|++|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            4455666666666666666666666655

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.85  E-value=7e-06  Score=50.45  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=16.5

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|+.|++.|.....|.+|+++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            4455566666666666666666666555

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.84  E-value=4e-06  Score=63.56  Aligned_cols=49  Identities=14%  Similarity=0.219  Sum_probs=39.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|.+|++.|..+..|..|+++|+++++|+|  ..|.    ....|..|+++|.|
T Consensus        26 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C--~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           26 YQCKHCDSKLQSTAELTSHLNIHNEEFQKRA--KRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHHHHHHHC--CCCS----CCCCCCCCCCCCCC
T ss_pred             CcCCCCCCEeCCHHHHHHHHHHhCCCCCccc--chhh----hHHHHHhhhccccc
Confidence            7899999999999999999999999999999  5554    34456667777765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.81  E-value=7e-06  Score=49.61  Aligned_cols=27  Identities=15%  Similarity=0.043  Sum_probs=15.8

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      .++++|.|.+|++.|.....|.+|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHH
Confidence            344556666666666666666666555

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=1.1e-06  Score=53.06  Aligned_cols=28  Identities=43%  Similarity=0.723  Sum_probs=26.2

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|  ..|++.|.+.++|.+|+++|++|
T Consensus         1 kp~~C--~~C~k~f~~~~~L~~H~~~H~~~   28 (32)
T 2kfq_A            1 YAFAC--PACPKRFMRSDALSKHIKTAFIV   28 (32)
T ss_dssp             CCSSS--SSSCTTHHHHHTTSSSTTSSSSS
T ss_pred             CCCCC--CCCCcccCCHHHHHHHHHHHccC
Confidence            58999  88999999999999999999986

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.79  E-value=9e-06  Score=46.77  Aligned_cols=29  Identities=34%  Similarity=0.760  Sum_probs=24.1

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ++|+|.++.|++.|.+.+.|.+|+++|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            47889322899999999999999999986

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.77  E-value=1.8e-05  Score=47.96  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=17.4

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|++|++.|.....|.+|+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHH
Confidence            3445666666666666666666666665

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.74  E-value=1.4e-05  Score=58.67  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHh-hhcCCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHK-RTHTEV  290 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~-rtHTGE  290 (290)
                      .++||||+|.++.|+|+|.++++|.+|+ ++|+||
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgE   56 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSD   56 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCC
Confidence            3556666664334666666666666665 456654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.74  E-value=1.6e-05  Score=50.49  Aligned_cols=28  Identities=25%  Similarity=0.504  Sum_probs=22.0

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhh
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      +.+||||+|  ++|||+|.+.++|.+|+..
T Consensus         3 ~~gekp~~C--~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            3 LLKPARFMC--LPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SSSCCCCEE--TTTTEECSCHHHHHHHHHH
T ss_pred             CCCccCeEC--CCCCCccCCHhHccCcCCe
Confidence            467888888  7788888888888888743

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.65  E-value=1.3e-05  Score=49.59  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=16.0

Q ss_pred             cCCC--CCCCCCCcchhhhchhhhcCCCCcc
Q psy16225        235 DGCP--RNGRPFKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       235 ~~C~--~CgksF~sks~L~~H~rvHtgeKpf  263 (290)
                      |.|.  .|++.|..+..|.+|+++|+++++|
T Consensus         7 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            7 FLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             EECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             eECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4555  3555555555555555555555554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.82  E-value=6.8e-06  Score=46.54  Aligned_cols=26  Identities=46%  Similarity=0.910  Sum_probs=20.5

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |||+|  +.|++.|.+.+.|..|+++|+
T Consensus         1 kp~~C--~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVC--ERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            46788  778888888888888888774

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.63  E-value=4.1e-05  Score=46.49  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=16.8

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |..+++|.|++|++.|.....|.+|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            3445566666666666666666666655

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.62  E-value=3.5e-05  Score=46.98  Aligned_cols=28  Identities=11%  Similarity=0.053  Sum_probs=19.6

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|.+|++.|.....|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            4556677777777777777777777766

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.62  E-value=3.1e-05  Score=47.05  Aligned_cols=28  Identities=14%  Similarity=0.020  Sum_probs=19.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|.+|++.|.....|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            4455667777777777777777777666

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=3.6e-05  Score=46.93  Aligned_cols=28  Identities=18%  Similarity=0.096  Sum_probs=17.6

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |..+++|.|.+|++.|.....|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            3445666666666666666666666665

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.58  E-value=2.9e-05  Score=44.54  Aligned_cols=26  Identities=35%  Similarity=0.422  Sum_probs=12.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|++|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhcCC
Confidence            34455555555555555555554443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.55  E-value=0.00015  Score=52.15  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=26.8

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccCCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGP  225 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~  225 (290)
                      +..+++|.|++|+|.|.....|++|+++ |.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ-HGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH-HTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh-hCCCc
Confidence            4456899999999999999999999998 54443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.53  E-value=2.4e-05  Score=44.95  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=12.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|+.|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            34455555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.52  E-value=3.8e-05  Score=44.17  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=13.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|.+|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHccC
Confidence            34555555555555555555555444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=5.1e-05  Score=48.59  Aligned_cols=27  Identities=19%  Similarity=0.089  Sum_probs=18.3

Q ss_pred             CCCCCCcCCc--cCcccCChHHHHHhhhh
Q psy16225        193 WIDTPGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       193 ~~e~~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      .++++|.|++  |++.|.+...|++|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4556677764  77777777777777766

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.48  E-value=4.7e-05  Score=43.04  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=10.9

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.|++|++.|.....|.+|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4455555555555555555444

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.48  E-value=4.4e-05  Score=46.78  Aligned_cols=28  Identities=11%  Similarity=0.031  Sum_probs=17.3

Q ss_pred             cCCCCCCcCCccCcccCCh-HHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNM-HEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~-~~L~~H~~~  219 (290)
                      |.++++|.|++|++.|... ..|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            4445666666666666666 666666665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.48  E-value=6.1e-05  Score=45.85  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=16.5

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ..+++|.|++|++.|.....|..|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            344566666666666666666666665

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.48  E-value=3.7e-05  Score=43.85  Aligned_cols=26  Identities=23%  Similarity=0.607  Sum_probs=13.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|..|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CcCCCCCcccCCHHHHHHHHHHhccC
Confidence            44555555555555555555555444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.47  E-value=4.5e-05  Score=47.14  Aligned_cols=28  Identities=7%  Similarity=-0.174  Sum_probs=20.6

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHh-hhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTH-LTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H-~~~  219 (290)
                      |.++++|.|++|++.|.....|.+| +++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            5566777777777777777777777 665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.60  E-value=1.7e-05  Score=45.89  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=16.8

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|..|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            56666666666666666666666654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.47  E-value=5.5e-05  Score=49.91  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=23.4

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhh-hcccCC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLT-VEHVGG  224 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~-~~H~g~  224 (290)
                      |.++++|.|.+|++.|.....|.+|++ + |.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~-H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHS-HLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHS-SCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhh-cCCC
Confidence            556778888888888888888888887 5 5443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.5e-05  Score=44.73  Aligned_cols=26  Identities=35%  Similarity=0.701  Sum_probs=12.6

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|.+|++.|.....|..|+++|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCccCChhHHHHHHHHhcCC
Confidence            34444455555444555554444443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.45  E-value=5.9e-05  Score=44.32  Aligned_cols=26  Identities=38%  Similarity=0.558  Sum_probs=14.2

Q ss_pred             cCCC--CCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCP--RNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~--~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|+  .|++.|..+..|..|+++|+++
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            4444  5555555555555555555554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.42  E-value=7e-05  Score=43.28  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=14.7

Q ss_pred             cCCCCCCCCCCcchhhhch-hhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNH-IRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H-~rvHtge  260 (290)
                      |.|..|++.|.....|..| +++|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             cCCcccCcccCChHHHHHHHHHHccCC
Confidence            4555555555555555555 4555554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.40  E-value=9.5e-05  Score=42.37  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=13.7

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            455555555555555555555555

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.39  E-value=7.8e-05  Score=42.33  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=17.5

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ++|.|+.|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            567777777777777777777765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00011  Score=52.37  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             ccCcccCChHHHHHhhhhcccCCC---cccccCccccCCCCCCCCCCcchhhhchhh
Q psy16225        202 TCGKMFNNMHEIVTHLTVEHVGGP---ECTTHACFWDGCPRNGRPFKAKYKLVNHIR  255 (290)
Q Consensus       202 ~CgKsF~~~~~L~~H~~~~H~g~~---~~~~~~C~~~~C~~CgksF~sks~L~~H~r  255 (290)
                      .|++.|.+...|..|+...|.+.+   ....+.|.|..|.   +.+.....|++|+|
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~---~~~~~~~~L~~Hir   61 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCD---FLGDDTASIVNHIN   61 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCC---CEESSHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCc---CCCCChHHHHhhcc
Confidence            477777777777777754465544   2223344444433   22233344555554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.36  E-value=9.8e-05  Score=42.08  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=16.7

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ++|.|++|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            466677777777777777777665

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.35  E-value=0.00011  Score=43.38  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=13.7

Q ss_pred             cCCC--CCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCP--RNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~--~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|.  .|++.|.....|..|+++|+++
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4454  4555555555555555555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.46  E-value=2.9e-05  Score=44.89  Aligned_cols=26  Identities=38%  Similarity=0.575  Sum_probs=15.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|..|++.|.....|..|+++|+++
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            45566666666666666666655554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.33  E-value=7.1e-05  Score=42.77  Aligned_cols=24  Identities=13%  Similarity=0.198  Sum_probs=17.8

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ++|.|++|++.|.....|.+|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            567777777777777777777765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.24  E-value=0.00014  Score=46.12  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.3

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHL  217 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~  217 (290)
                      +.++++|.|++|+|+|.+...|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45679999999999999999999998

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00042  Score=49.35  Aligned_cols=54  Identities=17%  Similarity=0.471  Sum_probs=46.0

Q ss_pred             CccccCCCCCCCCCCcchhhhchh-hhcCCCC------cccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        231 ACFWDGCPRNGRPFKAKYKLVNHI-RVHTGEK------PFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       231 ~C~~~~C~~CgksF~sks~L~~H~-rvHtgeK------pf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      .|.|..   |++.|.+...|+.|+ +.|.+.+      .|.|....|++.+.....|..|+|+.
T Consensus         3 ~C~W~~---C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            3 KCKWKE---CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCTT---CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eEeeCC---CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            566654   579999999999998 4888765      79998779999999999999999874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.20  E-value=0.00017  Score=44.34  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=17.7

Q ss_pred             cCCCCCCcCCc--cCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|.+  |++.|.....|.+|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            34556666663  66666666666666665

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.18  E-value=5.6e-05  Score=49.51  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=14.0

Q ss_pred             cCCCCCCcCC--ccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRK--TCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~--~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|+  .|++.|.....|.+|+++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            4444555553  355555555555555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.17  E-value=7.7e-05  Score=41.96  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=11.8

Q ss_pred             CCcCCccCcccCChHHHHHhhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      +|.|++|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            44555555555555555555444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.64  E-value=0.00076  Score=38.21  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=14.0

Q ss_pred             CCcCC--ccCcccCChHHHHHhhhh
Q psy16225        197 PGPRK--TCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~--~CgKsF~~~~~L~~H~~~  219 (290)
                      +|.|+  .|++.|.....|.+|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            45566  666666666666666655

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.04  E-value=0.0057  Score=49.41  Aligned_cols=30  Identities=33%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhh
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      ..|+|+++|.|  ..|+|.|.+.+.|..|+++
T Consensus        43 ed~tGekpfyC--~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRC--LACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEE--TTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEc--ccCcchhCCHHHHHHHHhh
Confidence            46889999999  7899999999999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.40  E-value=0.053  Score=45.04  Aligned_cols=52  Identities=27%  Similarity=0.544  Sum_probs=41.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ..|+.|+..+ .+..|..|....-..+.-.|  +.|+..+.. ..|..|+.+++|+
T Consensus       111 v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C--~~C~~~~~~-~~l~~H~~~~~~~  162 (170)
T 3hcs_A          111 MDCPQCQRPF-QKFHINIHILKDCPRRQVSC--DNCAASMAF-EDKEIHDQNCPLA  162 (170)
T ss_dssp             EECTTTCCEE-EGGGHHHHHHHTCTTCEEEC--TTTCCEEEG-GGHHHHHTTCCC-
T ss_pred             eECCCCChHH-HHHHHHHHhhhhCCCCCeEC--CCCCCccCH-HHHHhHHHhCcCh
Confidence            5788898877 56678899877777788889  679988854 5789999998885

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.10  E-value=0.029  Score=45.08  Aligned_cols=29  Identities=17%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      ..+.+.+.|.|  ..|++.|.+...|..|.+
T Consensus        86 ~~~~~~~~~~C--~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           86 ISDGEDRSKCC--PVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CSSCCCTTTEE--TTTTEECSSHHHHHHHHT
T ss_pred             cccCCCCCeEc--CCCCCEeCCHHHHHHHHC
Confidence            34566778999  889999999999999974

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=92.95  E-value=0.028  Score=45.33  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=25.0

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.++++|.|..|++.|.+...|..|+++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            4566899999999999999999999876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.70  E-value=0.13  Score=41.18  Aligned_cols=76  Identities=11%  Similarity=-0.079  Sum_probs=43.8

Q ss_pred             CcccccccCccccccCchhhHHH-HhcCCC-CCCcCCcc------CcccCChHHHHHhhhhcccCCCcccccCccccCCC
Q psy16225        167 AMQSAGTHGAFFRYMRQPIKQDM-TCLWID-TPGPRKTC------GKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCP  238 (290)
Q Consensus       167 ~~~~C~~Cg~~F~~~~~l~~H~~-~~h~~e-~~~~C~~C------gKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~  238 (290)
                      ..+.|..|+..|.+..++..|.. ..|... +.+.+..+      ++.+....    +... ...        ...+.|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~--------~~~~~C~   97 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEIS-DGE--------DRSKCCP   97 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCS-SCC--------CTTTEET
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccc-cCC--------CCCeEcC
Confidence            35789999999999999988874 112111 11111000      11221110    1001 111        1237899


Q ss_pred             CCCCCCCcchhhhchhh
Q psy16225        239 RNGRPFKAKYKLVNHIR  255 (290)
Q Consensus       239 ~CgksF~sks~L~~H~r  255 (290)
                      .|.+.|.+...+..|..
T Consensus        98 ~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           98 VCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTTEECSSHHHHHHHHT
T ss_pred             CCCCEeCCHHHHHHHHC
Confidence            99999999999999976

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=89.06  E-value=0.22  Score=41.25  Aligned_cols=82  Identities=11%  Similarity=0.052  Sum_probs=54.1

Q ss_pred             cccc--cccCccccccCchhhHHHHhcCCCCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCC
Q psy16225        168 MQSA--GTHGAFFRYMRQPIKQDMTCLWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFK  245 (290)
Q Consensus       168 ~~~C--~~Cg~~F~~~~~l~~H~~~~h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~  245 (290)
                      ...|  ..|+..+. ...+..|...|..  .+..|+.|+..+ ....|..|+...-...         ...|..|+..+.
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~~C~~--~~v~C~~C~~~~-~r~~l~~H~~~~C~~r---------~~~C~~C~~~~~  148 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQAHCEF--ALMDCPQCQRPF-QKFHINIHILKDCPRR---------QVSCDNCAASMA  148 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHTTCTT--SEEECTTTCCEE-EGGGHHHHHHHTCTTC---------EEECTTTCCEEE
T ss_pred             ccCCCCCCCCceec-HhHHHHHHhcCCc--eeeECCCCChHH-HHHHHHHHhhhhCCCC---------CeECCCCCCccC
Confidence            3446  57877654 3457777765533  567899999988 5677889986523222         257999988775


Q ss_pred             cchhhhchhhhcCCCCcc
Q psy16225        246 AKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       246 sks~L~~H~rvHtgeKpf  263 (290)
                      . ..|..|..++.|+.++
T Consensus       149 ~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          149 F-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             G-GGHHHHHTTCCC----
T ss_pred             H-HHHHhHHHhCcChhhh
Confidence            4 5689999999887664

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.59  E-value=0.3  Score=32.72  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=19.9

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ..|.|+.|++.|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            567888888888888888888875

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.33  E-value=0.59  Score=31.26  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=15.0

Q ss_pred             cCCCCCCCCCCcchhhhchhh
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR  255 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r  255 (290)
                      +.|+.|+..|.....|+.||+
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhh
Confidence            567777777777777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d2glia2	33	g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo	7e-16
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	6e-11
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	1e-09
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-09
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-09
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	6e-09
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	7e-09
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.003
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	7e-09
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	7e-09
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-08
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-07
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	3e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	5e-07
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	7e-07
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-06
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	1e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	9e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	3e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-04
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	6e-05
d1a1ia3	28	g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus)	4e-04
d1bhia_	38	g.37.1.1 (A:) Transactivation domain of cre-bp1/at	7e-04

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 7e-16
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE 260
             C W GC R  RPFKA+Y LV H+R HTGE
Sbjct: 3   FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (131), Expect = 6e-11
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
           ++P+ C  P C K F R+ +L  HK++H E
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +P+ CPF  C K FA+S NLK H  TH 
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (122), Expect = 1e-09
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +H+GEKP+ C    CGK F+RS  L  H+R HT
Sbjct: 1   IHSGEKPYGCVE--CGKAFSRSSILVQHQRVHT 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (118), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHK-RTHTE 289
           R H+GEKP+ C    C   F +S  +K+H  + HTE
Sbjct: 1   RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTE 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 4e-09
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
           R HTGEKP+ C    C K F + + L +H + + +
Sbjct: 1   RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD 33

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (116), Expect = 6e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV 290
             R  TG KPF CP   C + F+RS++L +H++ H  V
Sbjct: 2   STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHMLV 37

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 7e-09
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +PF C +  CGK F RS+ L+ HKRTHT
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHT 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGEK 261
             C W  C   G+ F    +L  H R HTGEK
Sbjct: 3   FMCTWSYC---GKRFTRSDELQRHKRTHTGEK 31

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 7e-09
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KP  C F  C K ++R ENLK H R+HT
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHT 28

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (115), Expect = 7e-09
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +P+ CP  +C + F+RS +L  H R HT
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHT 28

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KPF C F  CGK F+   NL+ H R HT
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHT 28

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
                   + + C    CGK F+ S +L  H+RTHT
Sbjct: 3   SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHT 36

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE 289
            +G++PF C    C   F    N   H + HT+
Sbjct: 2   SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 3e-07
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 229 THACFWDGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPF 267
           + +C    C   G+ F  K  L  H+++H+  + + C F
Sbjct: 1   SFSCPEPAC---GKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 5e-07
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 263 FPCPFPTCGKVFARSENLKIHKRTHT 288
           F CP P CGK F   ++LK H + H+
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHS 27

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (101), Expect = 7e-07
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +KPF C    C + F+RS++L  H RTHT
Sbjct: 1   QKPFQCR--ICMRNFSRSDHLTTHIRTHT 27

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 247 KYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +  +  +++    +K F C FP C K F R  N++ H +TH 
Sbjct: 4   RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 41.8 bits (99), Expect = 1e-06
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           + F C    C + FAR E+LK H R+HT
Sbjct: 1   RSFVCEV--CTRAFARQEHLKRHYRSHT 26

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 9e-06
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 241 GRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH 287
           G+ F  K +   H+ +H G +P+ C    CGK F    +L  H + H
Sbjct: 9   GKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           K F CP   C K F RS++L  H +TH 
Sbjct: 1   KKFACPE--CPKRFMRSDHLSKHIKTHQ 26

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 258 TGEKPFPCPFPTCGKVFARSENLKIH-KRTHT 288
           +  KP+ C    CGK F+R ++L  H K+ HT
Sbjct: 1   SVGKPYICQS--CGKGFSRPDHLNGHIKQVHT 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 6e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 237 CPRNGRPFKAKYKLVNHIR-VHTGEKPFPC 265
           C   G+ F     L  HI+ VHT E+P  C
Sbjct: 8   CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (87), Expect = 6e-05
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 261 KPFPCPFPTCGKVFARSENLKIHKRTHT 288
           KP+ C    CGK F+++  L  H+R HT
Sbjct: 1   KPYKCL--ECGKAFSQNSGLINHQRIHT 26

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (80), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTH 287
           EKPF C    CG+ FARS+  K H + H
Sbjct: 1   EKPFACDI--CGRKFARSDERKRHTKIH 26

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 260 EKPFPCPFPTCGKVFARSENLKIHKRTHT 288
           +KPF C  P CG+ F   ++L +HK  H 
Sbjct: 4   DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.4
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.28
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.24
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.18
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.06
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.06
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.92
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.91
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.91
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.86
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.82
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.82
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.78
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.71
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.6
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.58
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.55
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.53
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.42
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.4
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.38
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.27
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.24
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.22
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.2
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.11
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.03
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.9
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.82
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.78
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.69
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.66
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.63
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.61
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.6
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.5
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.49
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.41
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.32
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.27
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.25
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.2
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.19
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.09
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.02
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.89
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.86
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.79
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.65
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.32
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.31
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.0
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.99
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.96
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.89
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.72
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.53
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.5
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.98
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.68
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.53
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.32
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.02
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	93.97
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.96
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.73
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.7
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.36
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.02
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.88
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.81
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	91.99
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.87
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.65
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.97
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.79
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.77
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.44
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.18
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.03
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.02
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	88.85
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.36
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	86.89
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	85.14
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	84.34
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	84.0
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.63
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	82.21

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-14  Score=97.19  Aligned_cols=50  Identities=32%  Similarity=0.664  Sum_probs=47.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |.| .||+.|..+..|..|+++|++++||.|  .+||++|.+.+.|.+|+++|
T Consensus         4 y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C--~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             EEC-TTSCEESSHHHHHHHHHHHSCCCSEEC--TTTSCEESSSHHHHHHHTTT
T ss_pred             CCC-CCCCeECCHHHhHHHhhccccccCCcC--CCcCCEecCHHHHHHHHhcC
Confidence            899 599999999999999999999999999  88999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8e-13  Score=84.58  Aligned_cols=37  Identities=32%  Similarity=0.624  Sum_probs=35.8

Q ss_pred             chhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        252 NHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       252 ~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|+++|++||||+|  ++|||+|.+.++|.+|+++||||
T Consensus         2 rH~~~Ht~ekpy~C--~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEec--CCCCceeeCHHHHHHhCccCCCC
Confidence            68999999999999  88999999999999999999998

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-12  Score=89.06  Aligned_cols=53  Identities=36%  Similarity=0.673  Sum_probs=45.0

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhhcccCCCcccccCccccCCCCCCCCCCcchhhhchhhhc
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPECTTHACFWDGCPRNGRPFKAKYKLVNHIRVH  257 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~~~~~~C~~~~C~~CgksF~sks~L~~H~rvH  257 (290)
                      |++|+|+ |++.|.....|.+|+++ |.++++        |.|.+|++.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~-Ht~ekp--------y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRP--------YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHH-HSCCCS--------EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhc-cccccC--------CcCCCcCCEecCHHHHHHHHhcC
Confidence            5788994 99999999999999888 666666        78899999999999999998876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.4e-12  Score=78.10  Aligned_cols=33  Identities=52%  Similarity=0.978  Sum_probs=32.0

Q ss_pred             hcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        256 VHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       256 vHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|++||||+|  .+|||+|.+.++|.+|+|+|+||
T Consensus         1 IHTgekpy~C--~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeC--CCCCCEeCchHHhHhhccccCCC
Confidence            6999999999  89999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=4.4e-11  Score=75.86  Aligned_cols=35  Identities=43%  Similarity=0.913  Sum_probs=33.5

Q ss_pred             hhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        253 HIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       253 H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.|+|+|||||+|  .+|+|+|.++++|++|+++|.+
T Consensus         2 h~R~HTgeKPy~C--~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEe--CCCCCEecCHHHHHHHHhcCcC
Confidence            7899999999999  8899999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.9e-11  Score=81.59  Aligned_cols=43  Identities=33%  Similarity=0.615  Sum_probs=38.2

Q ss_pred             chhhhchhhhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        247 KYKLVNHIRVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       247 ks~L~~H~rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +..|..|++ |++||||+|.++.|+|+|.+.++|++|+++||||
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            345777775 9999999997777999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.2e-11  Score=74.70  Aligned_cols=34  Identities=38%  Similarity=0.816  Sum_probs=32.3

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+|+|||||+|  .+|||+|.++++|++|+++|++|
T Consensus         1 R~HTgekPy~C--~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEEC--CCCCCCcCCHhHHHHhCcccCCC
Confidence            68999999999  88999999999999999999976

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3e-10  Score=68.54  Aligned_cols=30  Identities=50%  Similarity=0.872  Sum_probs=28.5

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|.++.|+|+|.++++|++|+|+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            689998888999999999999999999998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.1e-10  Score=69.27  Aligned_cols=30  Identities=50%  Similarity=0.883  Sum_probs=28.7

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|.++.|+|+|.++++|++|+|+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            699998888999999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=3.2e-10  Score=70.83  Aligned_cols=32  Identities=31%  Similarity=0.695  Sum_probs=30.2

Q ss_pred             cCCCCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        257 HTGEKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       257 HtgeKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+|||||+|  ..|+|.|.++++|++|+|+|+++
T Consensus         2 ~TGekPy~C--~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccC--CCCCCcccChHHHHHHccccCCc
Confidence            789999999  88999999999999999999975

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.6e-10  Score=68.76  Aligned_cols=30  Identities=53%  Similarity=1.013  Sum_probs=28.6

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|+++.|+|+|++.++|++|+|+||||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            689998889999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=4.1e-10  Score=66.85  Aligned_cols=28  Identities=50%  Similarity=0.940  Sum_probs=26.9

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ||||+|  .+|+|+|.++++|.+|+|+|||
T Consensus         1 EKPy~C--~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQC--RICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccC--CCCcCEecccccccccCCCccC
Confidence            799999  8899999999999999999998

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.2e-10  Score=69.17  Aligned_cols=34  Identities=44%  Similarity=0.828  Sum_probs=29.8

Q ss_pred             hhcCCCCcccCCCCCCCCccCChHHHHHHhh-hcCCC
Q psy16225        255 RVHTGEKPFPCPFPTCGKVFARSENLKIHKR-THTEV  290 (290)
Q Consensus       255 rvHtgeKpf~C~~~~CgKsFs~~s~L~~H~r-tHTGE  290 (290)
                      |+|+|||||+|  +.|+|.|.++++|++|++ .|++|
T Consensus         1 R~HTgekP~~C--~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeC--CCCcccccchHHHHHHcccccCCC
Confidence            68999999999  789999999999999975 56543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.82  E-value=1.1e-09  Score=65.61  Aligned_cols=28  Identities=46%  Similarity=0.880  Sum_probs=25.6

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||+|  ++|+|+|.+.++|++|+++||||
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVC--EVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCC--CCCCCCCCCchHcccccCcccCC
Confidence            68999  78999999999999999999997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-09  Score=64.83  Aligned_cols=28  Identities=46%  Similarity=0.873  Sum_probs=25.2

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||.|  ++|||+|.++++|.+|+|+||||
T Consensus         1 Kpy~C--~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFAC--PECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCC--TTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEEC--CcCCCeecchHHhhhhcCccCCc
Confidence            68999  78999999999999999999987

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2e-09  Score=64.34  Aligned_cols=29  Identities=41%  Similarity=0.951  Sum_probs=27.7

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |||+|.++.|+|+|.++++|++|+|+|||
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            69999888999999999999999999997

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=4.7e-09  Score=64.08  Aligned_cols=31  Identities=39%  Similarity=0.932  Sum_probs=29.0

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ||||.|.++.|+|+|.++++|++|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            7899998888999999999999999999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.2e-09  Score=67.79  Aligned_cols=31  Identities=39%  Similarity=0.702  Sum_probs=25.9

Q ss_pred             cCCCCCCCCCCcchhhhchhh-hcCCCCcccC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIR-VHTGEKPFPC  265 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~r-vHtgeKpf~C  265 (290)
                      |.|.+||+.|..+++|.+|++ +|++||||+|
T Consensus         6 y~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             ccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            788888888888888888875 7888888888

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.8e-09  Score=61.39  Aligned_cols=28  Identities=54%  Similarity=1.003  Sum_probs=26.6

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |||.|.++.|||+|.+.++|++|+|+||
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998899999999999999999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=8.5e-09  Score=59.84  Aligned_cols=26  Identities=46%  Similarity=0.975  Sum_probs=24.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |||+|  .+|||+|.++++|.+|+|+||
T Consensus         1 KPy~C--~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKC--LECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccC--CCCcCeeccCcccccCccCCC
Confidence            69999  899999999999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=9.6e-09  Score=65.11  Aligned_cols=26  Identities=38%  Similarity=0.654  Sum_probs=14.1

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|++|||+|..+++|..|+++|+||
T Consensus        13 y~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          13 YKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             EecCCCCceeeCHHHHHHhCccCCCC
Confidence            45555555555555555555555554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.4e-09  Score=64.89  Aligned_cols=32  Identities=28%  Similarity=0.726  Sum_probs=27.7

Q ss_pred             cCCCC--CCCCCCcchhhhchhhhcCCCCcccCC
Q psy16225        235 DGCPR--NGRPFKAKYKLVNHIRVHTGEKPFPCP  266 (290)
Q Consensus       235 ~~C~~--CgksF~sks~L~~H~rvHtgeKpf~C~  266 (290)
                      |.|+.  |++.|..++.|.+|+++|+|||||+|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            34554  899999999999999999999999994

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.42  E-value=4.1e-08  Score=58.51  Aligned_cols=27  Identities=37%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.|++|++.|..++.|.+|+++|+|||
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCCCchHcccccCcccCCC
Confidence            667777777777777777777777765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7.9e-08  Score=61.12  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             CCCCCcCCccCcccCChHHHHHhhhhcccCCCc
Q psy16225        194 IDTPGPRKTCGKMFNNMHEIVTHLTVEHVGGPE  226 (290)
Q Consensus       194 ~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g~~~  226 (290)
                      .++||.|++|+|.|.....|++|++..|.++++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            468999999999999999999998755888877

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.5e-08  Score=57.93  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.|++|++.|..++.|.+|+|+|+|||
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             EECCcCCCeecchHHhhhhcCccCCcC
Confidence            677777777777777777777777765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.5e-08  Score=58.75  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.+++||+|++|+|+|.....|.+|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            5666777777777777777777777776

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-07  Score=58.26  Aligned_cols=30  Identities=20%  Similarity=0.249  Sum_probs=25.2

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcc
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      |++|+||+|++|+++|.....|++|+++++
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            778888888888888888888888888844

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.1e-07  Score=57.68  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=24.7

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVG  223 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g  223 (290)
                      |.+|+||+|++|+|.|.++.+|++|+++ |.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~-Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc-cCC
Confidence            5678888888888888888888888887 543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-07  Score=57.84  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhhcccC
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTVEHVG  223 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~~H~g  223 (290)
                      |++|+||.|++|++.|.+..+|++|++.+|.+
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            78899999999999999999999998776654

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.3e-07  Score=57.92  Aligned_cols=28  Identities=43%  Similarity=0.925  Sum_probs=26.4

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.++.|+|+|.++++|++|+++|+||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htge   29 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDT   29 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCC
Confidence            7898888999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=2.3e-07  Score=54.65  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=17.3

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhh
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |+||+|++|+|.|.....|++|+++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            4667777777777777777777766

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=5.4e-07  Score=56.46  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             cCCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        192 LWIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       192 h~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |.+|+||+|++|++.|.++..|.+|+++
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            6667777777777777777777777766

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.5e-07  Score=51.19  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=15.0

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      +||+|++|||.|...+.|.+|+++
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            356666666666666666666665

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=7.2e-07  Score=58.81  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=16.5

Q ss_pred             cCCCC--CCCCCCcchhhhchhhhcCCCC
Q psy16225        235 DGCPR--NGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       235 ~~C~~--CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.|..  |++.|..+++|..|+++|+|||
T Consensus        19 y~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             eECCcCCCCccccCchHHHhhcccccCCC
Confidence            55544  6666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.4e-06  Score=50.99  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=14.5

Q ss_pred             cCCCC--CCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPR--NGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~--CgksF~sks~L~~H~rvHtge  260 (290)
                      |.|+.  |++.|..++.|.+|+|+|+||
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             eeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            44544  555555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.8e-06  Score=50.46  Aligned_cols=27  Identities=41%  Similarity=0.581  Sum_probs=17.6

Q ss_pred             cCC--CCCCCCCCcchhhhchhhhcCCCC
Q psy16225        235 DGC--PRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       235 ~~C--~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.|  +.|++.|...++|.+|+|+|+|||
T Consensus         3 f~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            445  346777777777777777777664

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.5e-06  Score=49.47  Aligned_cols=30  Identities=33%  Similarity=0.738  Sum_probs=27.9

Q ss_pred             CcccCCCCCCCCccCChHHHHHHh-hhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHK-RTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~-rtHTGE  290 (290)
                      |||.|.++.|.|.|+..++..+|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            689999999999999999999997 999876

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=9.8e-06  Score=46.46  Aligned_cols=27  Identities=52%  Similarity=1.016  Sum_probs=25.3

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      ||||.|  +.||+.|+++...++|.++|.
T Consensus         1 EkPf~C--~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFAC--DICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEEC--TTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCccc--chhhhhhhcchhhhhhhhhcc
Confidence            689999  889999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.3e-05  Score=44.60  Aligned_cols=26  Identities=50%  Similarity=1.008  Sum_probs=20.3

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |.+|  +.|+|.|+++..|+.|+|.|||
T Consensus         1 phkc--~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKC--EVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCB--TTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCcc--chhhhHhcchhHHHHHhhccCC
Confidence            4567  6688888888888888888876

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.8e-06  Score=48.65  Aligned_cols=21  Identities=38%  Similarity=0.890  Sum_probs=10.3

Q ss_pred             CCCCCCcchhhhchhhhcCCC
Q psy16225        240 NGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       240 CgksF~sks~L~~H~rvHtge  260 (290)
                      |++.|..++.|.+|+|+|+||
T Consensus        10 Cgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCCEESCHHHHHHHHHHHHCC
T ss_pred             CCceECcHHHcCccccccCCC
Confidence            445555555555555544443

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.7e-05  Score=45.01  Aligned_cols=26  Identities=42%  Similarity=0.741  Sum_probs=22.3

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      ..|  .+|||.|..++.|++|+-+||||
T Consensus         3 hvc--~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVC--AECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EEC--TTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chH--HHHhHHHHHHHHHHHHhhcccCC
Confidence            467  78999999999999999899887

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1e-05  Score=48.84  Aligned_cols=31  Identities=61%  Similarity=1.217  Sum_probs=29.2

Q ss_pred             cCccccCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        230 HACFWDGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       230 ~~C~~~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      +.|.|..|..-++.|+.++.|+.|+|+|+||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            5799999999999999999999999999986

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.9e-05  Score=45.75  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=26.6

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      |||.|.++.|+|++...++|++|++++.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            68999989999999999999999998765

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.50  E-value=2.3e-05  Score=44.96  Aligned_cols=30  Identities=43%  Similarity=0.691  Sum_probs=28.6

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |||.|.+..|.|.|.+.-.|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            689999999999999999999999999997

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=3.5e-05  Score=46.39  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=17.6

Q ss_pred             CCCCcCCc--cCcccCChHHHHHhhhh
Q psy16225        195 DTPGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       195 e~~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      |+||.|+.  |+|.|.+..+|++|+++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            46677766  77777777777777776

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=4.6e-05  Score=43.48  Aligned_cols=27  Identities=37%  Similarity=0.837  Sum_probs=25.5

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      .||+|+...|+|.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589999999999999999999999988

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.4e-05  Score=43.43  Aligned_cols=29  Identities=38%  Similarity=0.701  Sum_probs=26.3

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |+||+|  ..|...-..++.|..|+|.|||+
T Consensus         1 erpfkc--qlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKC--QICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEEC--SSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCccee--eecccccCCchheEEeeecccCc
Confidence            689999  67999999999999999999985

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.8e-05  Score=47.05  Aligned_cols=29  Identities=38%  Similarity=0.731  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCCcc
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEKPF  263 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeKpf  263 (290)
                      ..|+.|||.|...+.|.+|...|++||||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            57888899999999999998899999987

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=3.3e-05  Score=45.46  Aligned_cols=24  Identities=17%  Similarity=0.508  Sum_probs=13.9

Q ss_pred             CCCcCCc--cCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      +||.|++  |+|.|.+..+|++|+++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            3555555  66666666666666555

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=6.8e-05  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhh
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |+||.|++|++.|....+.++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            5789999999999999999999887

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00011  Score=40.71  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=12.0

Q ss_pred             CcCCccCcccCChHHHHHhhhh
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      .+|+.|+|.|+++..|+.|++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            3455555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=5.4e-05  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=11.5

Q ss_pred             CCcCCc--cCcccCChHHHHHhhhh
Q psy16225        197 PGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      ||.|+.  |+|.|.+..+|++|+++
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            444544  55555555555555544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=7.5e-05  Score=41.69  Aligned_cols=24  Identities=50%  Similarity=0.801  Sum_probs=11.5

Q ss_pred             CCCCCCCCCcchhhhchhhhcCCC
Q psy16225        237 CPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       237 C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      |+.|.+.|.+++.|..|-|.|+||
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            444444444444444444444444

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00013  Score=42.35  Aligned_cols=28  Identities=43%  Similarity=1.015  Sum_probs=23.9

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      ||||.|  +.|+.+|.++..+.-|.|.|.|
T Consensus         1 ekp~~c--pic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSC--PVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEE--TTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCccc--chHHHHhhccccceEeeecccC
Confidence            688888  7799899888888888888876

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=7.9e-05  Score=42.14  Aligned_cols=26  Identities=42%  Similarity=0.647  Sum_probs=20.0

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGE  260 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtge  260 (290)
                      ..|.+|||.|...+.|++|+.+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            35777888888888888888888775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00027  Score=40.22  Aligned_cols=26  Identities=42%  Similarity=0.726  Sum_probs=21.8

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|  +.||......+-|++|.|+||+|
T Consensus         2 YvC--~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YIC--EECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBC--TTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccc--cccCcccCCHHHHHHHHHHhcCC
Confidence            678  67888888888888888888886

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00036  Score=38.83  Aligned_cols=25  Identities=48%  Similarity=0.826  Sum_probs=23.7

Q ss_pred             cCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        264 PCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       264 ~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      +|  +.|.|.|.++..|+.|-|.||||
T Consensus         2 qc--p~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 EC--PTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CC--TTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cC--cchHHHHHHhHhhhhccccccCC
Confidence            58  88999999999999999999997

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00024  Score=40.49  Aligned_cols=27  Identities=33%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcCCCC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHTGEK  261 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHtgeK  261 (290)
                      |.|++|+......+-|+.|+|.|++|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888998888874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00043  Score=42.47  Aligned_cols=30  Identities=40%  Similarity=0.957  Sum_probs=27.5

Q ss_pred             CCCcccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        259 GEKPFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       259 geKpf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      .+|||.|..+.|+.+|.+...|..|++.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            489999999999999999999999998773

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00065  Score=38.18  Aligned_cols=28  Identities=39%  Similarity=0.719  Sum_probs=25.1

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      .|||+|  ..|...-..+++|++|+|+|..
T Consensus         1 vkp~kc--k~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           1 VKPYKC--KTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CCSEEC--SSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCccc--ccccchhcchhhHhhhhhcccC
Confidence            379999  7899999999999999999963

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.61  E-value=0.0004  Score=40.26  Aligned_cols=30  Identities=30%  Similarity=0.678  Sum_probs=28.3

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.|.|+.|+..|.....|..|+-.||||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568999999999999999999999999998

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.32  E-value=0.0016  Score=35.64  Aligned_cols=24  Identities=29%  Similarity=0.736  Sum_probs=17.1

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |+|  ..|.++|..++.|.+|+|+|.
T Consensus         1 ykc--glcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKC--GLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBC--SSSCCBCSSHHHHHHHGGGTC
T ss_pred             Ccc--cchHHHHHHHHHHHHHHHhhc
Confidence            567  567777777777777777764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0016  Score=37.18  Aligned_cols=29  Identities=14%  Similarity=0.166  Sum_probs=23.9

Q ss_pred             CCCcCCccCcccCChHHHHHhhhhcccCC
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTVEHVGG  224 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~~H~g~  224 (290)
                      +||+|..|.......++|++|+++.|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            57889999988888899999998877543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0011  Score=39.26  Aligned_cols=28  Identities=36%  Similarity=0.685  Sum_probs=25.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |...|  ..|||.|.....|++|+-.|+||
T Consensus         4 k~~~c--e~cgk~frdvyhlnrhklshs~e   31 (35)
T d2epra1           4 KQVAC--EICGKIFRDVYHLNRHKLSHSGE   31 (35)
T ss_dssp             CSEEE--TTTTEEESSHHHHHHHGGGSCSC
T ss_pred             hhhhH--HHHHHHHHHHHHHHhhhcccCCC
Confidence            45679  88999999999999999999997

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.00  E-value=0.0016  Score=36.30  Aligned_cols=26  Identities=42%  Similarity=0.991  Sum_probs=24.1

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      |.|.|..|+|.|.....|+.|+-+||
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            77889999999999999999999886

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0025  Score=36.19  Aligned_cols=29  Identities=34%  Similarity=0.726  Sum_probs=25.1

Q ss_pred             CCcccCCCCCCCCccCChHHHHHHhhhcCCC
Q psy16225        260 EKPFPCPFPTCGKVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       260 eKpf~C~~~~CgKsFs~~s~L~~H~rtHTGE  290 (290)
                      |.-|.|  ..|...|.+.-.|+.|+..|+||
T Consensus         2 eqvftc--s~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTC--SVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEe--HHHHHHHHHHHhheeeeecccCC
Confidence            456889  77999999999999999999987

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0021  Score=38.37  Aligned_cols=30  Identities=33%  Similarity=0.596  Sum_probs=24.8

Q ss_pred             CcccCCCCCCC---CccCChHHHHHHhhhcCCC
Q psy16225        261 KPFPCPFPTCG---KVFARSENLKIHKRTHTEV  290 (290)
Q Consensus       261 Kpf~C~~~~Cg---KsFs~~s~L~~H~rtHTGE  290 (290)
                      |.|.|....|.   +.|.....|..|+|+||||
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            34777767775   5699999999999999998

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.89  E-value=0.0017  Score=35.48  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCcchhhhchhhhc
Q psy16225        236 GCPRNGRPFKAKYKLVNHIRVH  257 (290)
Q Consensus       236 ~C~~CgksF~sks~L~~H~rvH  257 (290)
                      +|..|.++|..++.|.+|+|+|
T Consensus         2 kcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            4555666666666666666655

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0025  Score=36.77  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=17.4

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhh
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |+||.|.+|+..|.++..+.-|++.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            3567777777777777777777766

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0026  Score=36.60  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=20.1

Q ss_pred             CCCcCCc--cCcccCChHHHHHhhhhcc
Q psy16225        196 TPGPRKT--CGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       196 ~~~~C~~--CgKsF~~~~~L~~H~~~~H  221 (290)
                      +||.|+.  |+|++...++|++|++..|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4677776  8888888888888887654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.0041  Score=38.07  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             CCCCCCcCCccCcccCChHHHHHhhhh
Q psy16225        193 WIDTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       193 ~~e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      |..+.|+|++|++.|.+...|--|++.
T Consensus         1 ~p~r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           1 WPPRSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CCCCccCCCCCCCccCCcccccchHhh
Confidence            345678888888888888888888877

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0041  Score=38.62  Aligned_cols=26  Identities=35%  Similarity=0.736  Sum_probs=23.0

Q ss_pred             CCCCcccCCCCCCCCccCChHHHHHHhh
Q psy16225        258 TGEKPFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       258 tgeKpf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      +|-|||.|  ..|+|.|....++.+|.-
T Consensus         1 TGiKPYeC--~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYEC--NICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEEC--SSSCCEESCHHHHHHHHH
T ss_pred             CCCCceec--cchhhhhhhHHHHHHhhh
Confidence            47799999  889999999999999863

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.008  Score=33.86  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=12.4

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      +||+|..|...-...+.|..|++.
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~   25 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRS   25 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CcceeeecccccCCchheEEeeec
Confidence            445555555555555555555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0091  Score=33.36  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      +||+|+.|...-...+.|++|+++
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhhc
Confidence            678888898888888888888887

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.015  Score=33.09  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=21.2

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      |||+|  ..|....+.+++|+.|.++-
T Consensus         1 kpy~c--qyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQC--QYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccc--cccccccccchhhhhhhhcc
Confidence            68999  56999999999999998863

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.013  Score=33.08  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=16.1

Q ss_pred             CCcCCccCcccCChHHHHHhhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ||.|..|+..|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            46677777777777777777764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.015  Score=32.85  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=17.5

Q ss_pred             CCCCcCCccCcccCChHHHHHhhhh
Q psy16225        195 DTPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       195 e~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ++.|.|..|.+.|.+.-+|+.|+-.
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs   26 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS   26 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec
Confidence            3456777777777777777777765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.97  E-value=0.018  Score=35.11  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=12.4

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      .|+|  ..|+|.|.+...|--|++.|.
T Consensus         5 ~~~C--~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTC--SFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEEC--TTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCC--CCCCCccCCcccccchHhhhc
Confidence            3455  445555555555555555443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.96  E-value=0.014  Score=33.70  Aligned_cols=26  Identities=35%  Similarity=0.873  Sum_probs=18.5

Q ss_pred             cccCCCCCCCCccCChHHHHHHhh-hcCC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKR-THTE  289 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~r-tHTG  289 (290)
                      ||.|  ..|++.|++..-|.+|.+ .|.|
T Consensus         1 Pf~C--~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPC--GLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEEC--TTTCCEESSHHHHHHHHTTTSCC
T ss_pred             Cccc--ccccchhhHHHHHHHHHHHHhcC
Confidence            5778  668888888887777754 4544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.73  E-value=0.016  Score=33.47  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcccC
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEHVG  223 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H~g  223 (290)
                      ||.|.+|++.|.+...|.+|+..-|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            577888888888888777777654543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.023  Score=31.86  Aligned_cols=25  Identities=32%  Similarity=0.733  Sum_probs=22.0

Q ss_pred             cCCCCCCCCccCChHHHHHHhhhcC
Q psy16225        264 PCPFPTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       264 ~C~~~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      .|+...|+|.|...+.+++|+.+|-
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4777889999999999999999884

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.027  Score=31.31  Aligned_cols=22  Identities=55%  Similarity=1.141  Sum_probs=19.3

Q ss_pred             cccCCCCCCCCccCChHHHHHHhh
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      ||+|  ..|||.+.++.+|..|.-
T Consensus         1 pf~c--~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFEC--PKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBC--TTTCCBCSSHHHHHHHHH
T ss_pred             CCcc--ccchhhhhhHhHHHHHHH
Confidence            6899  889999999999998863

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.029  Score=31.64  Aligned_cols=22  Identities=45%  Similarity=1.192  Sum_probs=19.6

Q ss_pred             cCCCCCCCCccCChHHHHHHhh
Q psy16225        264 PCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       264 ~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      .|.|+.|||.|+....|+-|++
T Consensus         2 ~cdf~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCCchhhhccHHHHHhHHH
Confidence            4788999999999999998876

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.88  E-value=0.027  Score=31.73  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=14.2

Q ss_pred             CCcCCc--cCcccCChHHHHHhhhh
Q psy16225        197 PGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      ||.|..  |++.|...+.|++|.++
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhc
Confidence            455543  66666666666666655

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.03  Score=31.59  Aligned_cols=23  Identities=30%  Similarity=0.713  Sum_probs=17.0

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhh
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      ||.|  ..|...|..+.+|.+|++.
T Consensus         1 py~C--~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHC--TYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEEC--SSSSCEESSHHHHHHHHHS
T ss_pred             Cccc--ceeeeeEeeccchhHhhhh
Confidence            5777  5688888888888887764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.043  Score=33.88  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=20.5

Q ss_pred             CCCCCcCCccCcccCChHHHHHhhh
Q psy16225        194 IDTPGPRKTCGKMFNNMHEIVTHLT  218 (290)
Q Consensus       194 ~e~~~~C~~CgKsF~~~~~L~~H~~  218 (290)
                      +-+||.|..|+|.|-....+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            3478889999999988888888864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.04  Score=31.15  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=19.6

Q ss_pred             CCCcCCccCcccCChHHHHHhhhhccc
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTVEHV  222 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~~H~  222 (290)
                      +||+|+.|..--.+.++|.+|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            467788887777777788888766553

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.65  E-value=0.032  Score=31.52  Aligned_cols=23  Identities=35%  Similarity=0.639  Sum_probs=13.7

Q ss_pred             CCcCCc--cCcccCChHHHHHhhhh
Q psy16225        197 PGPRKT--CGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~--CgKsF~~~~~L~~H~~~  219 (290)
                      ||+|..  |.|.|.+...|.+|..+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~t   26 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLT   26 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHH
T ss_pred             CcCcccccccccchhhhhhhhhhcc
Confidence            455543  66666666666666555

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.089  Score=29.28  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=11.8

Q ss_pred             CCCCCccCChHHHHHHhhhcC
Q psy16225        268 PTCGKVFARSENLKIHKRTHT  288 (290)
Q Consensus       268 ~~CgKsFs~~s~L~~H~rtHT  288 (290)
                      ++|..+...+..|+.|.|+|-
T Consensus         6 ~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           6 SECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SSSSCEESSHHHHHHHHGGGC
T ss_pred             cccccccCcHHHHHHhhcccc
Confidence            555555555555555555553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.79  E-value=0.089  Score=29.12  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=15.0

Q ss_pred             CCcCCccCcccCChHHHHHhhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ||+|..|+|.+-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            46677777777777777666543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.77  E-value=0.062  Score=29.09  Aligned_cols=23  Identities=17%  Similarity=0.457  Sum_probs=17.1

Q ss_pred             CCcCCccCcccCChHHHHHhhhh
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ||+|..|...|-.+..|..|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            57777888888888777777643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.046  Score=30.47  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=15.5

Q ss_pred             cCCCCCCCCCCcchhhhchhhhcC
Q psy16225        235 DGCPRNGRPFKAKYKLVNHIRVHT  258 (290)
Q Consensus       235 ~~C~~CgksF~sks~L~~H~rvHt  258 (290)
                      .+|++|.++..++..|+.|.|+|-
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            356666666666666666666663

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.18  E-value=0.083  Score=28.58  Aligned_cols=22  Identities=27%  Similarity=0.827  Sum_probs=19.4

Q ss_pred             cccCCCCCCCCccCChHHHHHHhh
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKR  285 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~r  285 (290)
                      ||+|  ..|...|.++.+|..|+-
T Consensus         2 pykc--sscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKC--SSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEEC--SSSCCEESSHHHHHHHHH
T ss_pred             CCcc--cHHHHHHHHHHHHHHHHH
Confidence            7899  889999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.11  Score=29.19  Aligned_cols=24  Identities=29%  Similarity=0.609  Sum_probs=18.4

Q ss_pred             CcccCCCCCCCCccCChHHHHHHhhh
Q psy16225        261 KPFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       261 Kpf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      +||+|  .-|..--.+.++|..|++.
T Consensus         1 rPFkC--~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKC--NYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEEC--SSSSCEESSHHHHHHHHHH
T ss_pred             CCccc--ceecccccCcchHHHHHHH
Confidence            57888  5588778888888888764

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.13  Score=30.20  Aligned_cols=26  Identities=31%  Similarity=0.726  Sum_probs=19.9

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhcCC
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTHTE  289 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtHTG  289 (290)
                      .|.|  ..|||.|.+...+.+|-...+|
T Consensus         4 afvc--skcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVC--SKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEEC--SSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeee--cccccchhcchHHHHHhhhcCC
Confidence            4778  7888888888888888766554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.85  E-value=0.096  Score=28.41  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             CcCCccCcccCChHHHHHhhhhcc
Q psy16225        198 GPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       198 ~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      |+|+.|-|.|.++.++..|+++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888887776643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.19  Score=31.95  Aligned_cols=24  Identities=42%  Similarity=0.934  Sum_probs=19.5

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhhc
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRTH  287 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rtH  287 (290)
                      -|.|  ..|||.|.....|+.|.-.|
T Consensus         6 l~pC--G~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPC--GLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCC--TTTCCCCSCHHHHHHHHHHH
T ss_pred             eeec--cccccccCCHHHHhHhHHhc
Confidence            4778  77999999888888887665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.19  Score=31.92  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             CCCcCCccCcccCChHHHHHhhhh
Q psy16225        196 TPGPRKTCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       196 ~~~~C~~CgKsF~~~~~L~~H~~~  219 (290)
                      ..|+|..|+|.|.....|+.|...
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHh
Confidence            468899999999999999999876

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.24  Score=27.36  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=18.2

Q ss_pred             CCcCCccCcccCChHHHHHhhhhcc
Q psy16225        197 PGPRKTCGKMFNNMHEIVTHLTVEH  221 (290)
Q Consensus       197 ~~~C~~CgKsF~~~~~L~~H~~~~H  221 (290)
                      .|+|+.|+....+++.|..|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3677788877788888877776543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.34  E-value=0.3  Score=26.98  Aligned_cols=23  Identities=43%  Similarity=0.934  Sum_probs=20.2

Q ss_pred             cccCCCCCCCCccCChHHHHHHhhh
Q psy16225        262 PFPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       262 pf~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      .|+|  +.|+-..+++++|..|+|.
T Consensus         2 k~qc--phc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHC--PHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEEC--SSSSCEESSHHHHHHHHHH
T ss_pred             CccC--CcchhheeehhhhhHHhhh
Confidence            4789  7899999999999999874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.27  Score=29.65  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=21.3

Q ss_pred             CCCCCcCC--ccCcccCChHHHHHhhhh
Q psy16225        194 IDTPGPRK--TCGKMFNNMHEIVTHLTV  219 (290)
Q Consensus       194 ~e~~~~C~--~CgKsF~~~~~L~~H~~~  219 (290)
                      .++||.|.  -|+.+|.+...|..|...
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhh
Confidence            36889995  499999999988888876

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.63  E-value=0.36  Score=27.62  Aligned_cols=19  Identities=11%  Similarity=0.013  Sum_probs=9.5

Q ss_pred             cCccccccCchhhHHHHhc
Q psy16225        174 HGAFFRYMRQPIKQDMTCL  192 (290)
Q Consensus       174 Cg~~F~~~~~l~~H~~~~h  192 (290)
                      |.|.|.+.++..+|..+.|
T Consensus        10 C~KafsNsSDraKHqnRTH   28 (31)
T d2glia4          10 CSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCCEESSSSTTHHHHHHTT
T ss_pred             hhhhhcchhhhhhhccccc
Confidence            5555555555555543333

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.21  E-value=0.45  Score=25.66  Aligned_cols=22  Identities=41%  Similarity=0.978  Sum_probs=17.1

Q ss_pred             ccCCCCCCCCccCChHHHHHHhhh
Q psy16225        263 FPCPFPTCGKVFARSENLKIHKRT  286 (290)
Q Consensus       263 f~C~~~~CgKsFs~~s~L~~H~rt  286 (290)
                      |.|  +.|-|.|.++.++..|.++
T Consensus         2 ypc--p~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPC--PFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EEC--TTTCCEESCHHHHHHHHHH
T ss_pred             cCC--chhhHHhccccCceEEEEE
Confidence            678  6688888888888888764