Psyllid ID: psy16230

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--

MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT

cccccccccccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEcccEEEEEcccccEEEEEccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccccccEEEEcccccEEcccEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEcccEEEEEEEccccEEEEEEEEc

cccccccccEccccccccccccccccccccEEccEEEEEccccccccEEEEEEEccccEEEEEEEEEEEEEEccccccEEEEccccccccHHHHHHHccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEEEEcccccccccEEEEcccccEEcccEEEEEccEEEEccHccccccccEcccccccccccccHHcccEEEEcccEEEEEEccccccEEEEEEEc

mltgesvpvmktalpsqsdfynekedvnhtlYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLdkgltnsqlhqfngftfEEQFMRGIvygkneinvpiqniSSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKrskglyeevptthlvpgdiivipkhgctlacdatllqgncivnesmltgesvpvmktalpsqsdfynekedvnhtlYCGTVILQARYHGDEYLHAVVIRT

mltgesvpvmktalpSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRqkslhdtvntvdkvtvkrskglyeevptthlvpgDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT

MLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHdtvntvdkvtvkRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT

***********************KEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTAL***SDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVI**

********VMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT

*****SVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		292	2.2.26 [Sep-21-2011]
Q9H7F0		1226	Probable cation-transport	yes	N/A	0.818	0.194	0.418	1e-49
Q95JN5		492	Probable cation-transport	N/A	N/A	0.818	0.485	0.415	4e-49
Q5XF89		1219	Probable cation-transport	yes	N/A	0.818	0.196	0.407	1e-48
Q9NQ11		1180	Probable cation-transport	no	N/A	0.763	0.188	0.420	3e-47
Q9CTG6		1169	Probable cation-transport	no	N/A	0.763	0.190	0.420	3e-46
Q4VNC0		1218	Probable cation-transport	no	N/A	0.828	0.198	0.431	5e-45
Q5XF90		1193	Probable cation-transport	no	N/A	0.842	0.206	0.389	7e-45
Q5ZKB7		1204	Probable cation-transport	no	N/A	0.801	0.194	0.418	2e-44
Q3TYU2		1216	Probable cation-transport	no	N/A	0.825	0.198	0.426	1e-41
Q4VNC1		1196	Probable cation-transport	no	N/A	0.845	0.206	0.380	1e-40

>sp\|Q9H7F0\|AT133_HUMAN Probable cation-transporting ATPase 13A3 OS=Homo sapiens GN=ATP13A3 PE=1 SV=4	Back alignment and function desciption

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/253 (41%), Positives = 156/253 (61%), Gaps = 14/253 (5%)

Query: 54  RTEVTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFN--GFTFEEQFMRGIV 111
           +TE  +++      + Y W+D   NF  L GLD+G++ + +++ +  G T      R ++
Sbjct: 131 QTESQQIRYFTHHSVKYFWNDTIHNFDFLKGLDEGVSCTSIYEKHSAGLTKGMHAYRKLL 190

Query: 112 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 171
           YG NEI V + ++  L + E LNPFYIFQ+F++ +W  + YYYY  AI+ MS+  IVSS+
Sbjct: 191 YGVNEIAVKVPSVFKLLIKEVLNPFYIFQLFSVILWSTDEYYYYALAIVVMSIVSIVSSL 250

Query: 172 IQTRQK--SLHDTVNT--VDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATL 227
              R++   LHD V T    +V+V R     EE+ +T LVPGD++VIP +G  + CDA L
Sbjct: 251 YSIRKQYVMLHDMVATHSTVRVSVCRVNEEIEEIFSTDLVPGDVMVIPLNGTIMPCDAVL 310

Query: 228 LQGNCIVNESMLTGESVPVMKTALPSQS--------DFYNEKEDVNHTLYCGTVILQARY 279
           + G CIVNESMLTGESVPV KT LP+ S        + YN +    HTL+CGT ++Q R+
Sbjct: 311 INGTCIVNESMLTGESVPVTKTNLPNPSVDVKGIGDELYNPETHKRHTLFCGTTVIQTRF 370

Query: 280 HGDEYLHAVVIRT 292
           +  E + A+V+RT
Sbjct: 371 YTGELVKAIVVRT 383

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: -

>sp\|Q95JN5\|AT133_MACFA Probable cation-transporting ATPase 13A3 (Fragment) OS=Macaca fascicularis GN=ATP13A3 PE=2 SV=2	Back alignment and function description

>sp\|Q5XF89\|AT133_MOUSE Probable cation-transporting ATPase 13A3 OS=Mus musculus GN=Atp13a3 PE=1 SV=1	Back alignment and function description

>sp\|Q9NQ11\|AT132_HUMAN Probable cation-transporting ATPase 13A2 OS=Homo sapiens GN=ATP13A2 PE=1 SV=2	Back alignment and function description

>sp\|Q9CTG6\|AT132_MOUSE Probable cation-transporting ATPase 13A2 OS=Mus musculus GN=Atp13a2 PE=2 SV=3	Back alignment and function description

>sp\|Q4VNC0\|AT135_HUMAN Probable cation-transporting ATPase 13A5 OS=Homo sapiens GN=ATP13A5 PE=2 SV=1	Back alignment and function description

>sp\|Q5XF90\|AT134_MOUSE Probable cation-transporting ATPase 13A4 OS=Mus musculus GN=Atp13a4 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZKB7\|AT134_CHICK Probable cation-transporting ATPase 13A4 OS=Gallus gallus GN=ATP13A4 PE=2 SV=1	Back alignment and function description

>sp\|Q3TYU2\|AT135_MOUSE Probable cation-transporting ATPase 13A5 OS=Mus musculus GN=Atp13a5 PE=2 SV=2	Back alignment and function description

>sp\|Q4VNC1\|AT134_HUMAN Probable cation-transporting ATPase 13A4 OS=Homo sapiens GN=ATP13A4 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		292
189238168		1560	PREDICTED: similar to cation-transportin	0.808	0.151	0.617	4e-82
328697992		1172	PREDICTED: probable cation-transporting	0.811	0.202	0.591	1e-80
328697990		1226	PREDICTED: probable cation-transporting	0.811	0.193	0.591	2e-80
340725047		1228	PREDICTED: probable cation-transporting	0.811	0.192	0.568	1e-69
340725049		1235	PREDICTED: probable cation-transporting	0.811	0.191	0.568	1e-69
350398420		1228	PREDICTED: probable cation-transporting	0.811	0.192	0.560	6e-69
332022550		1451	Putative cation-transporting ATPase 13A3	0.811	0.163	0.520	1e-68
307197098		1456	Probable cation-transporting ATPase 13A3	0.811	0.162	0.520	1e-68
190702506		1444	cation-transporting ATPase [Glyptapantel	0.969	0.195	0.455	3e-68
383854605		1465	PREDICTED: probable cation-transporting	0.811	0.161	0.520	2e-67

>gi\|189238168\|ref\|XP_973365.2\| PREDICTED: similar to cation-transporting ATPase [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 183/238 (76%), Gaps = 2/238 (0%)

Query: 57  VTELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNE 116
           +T+++++  KKL Y+W +++  FIKL GLDKG+   + H+  G+  EEQ  R I YG NE
Sbjct: 528 LTQVRIVRCKKLTYIWDEEKYKFIKLSGLDKGIACREFHEQKGYKKEEQNRRRITYGTNE 587

Query: 117 INVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR- 175
           INVP+Q+I +L VLEAL PFYIFQ+F+L VWFAEAYYYYT AI+ MSVFGI +S+IQTR 
Sbjct: 588 INVPVQSIVTLLVLEALTPFYIFQLFSLIVWFAEAYYYYTIAIVIMSVFGISTSIIQTRK 647

Query: 176 -QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIV 234
            Q++L  TV+T DK+ V RS G ++E+PTT LVPGD+IVIP HGC + CDA LL GNCIV
Sbjct: 648 SQENLKGTVHTADKIMVSRSDGTFDEIPTTELVPGDVIVIPSHGCDMQCDAVLLNGNCIV 707

Query: 235 NESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292
           NESMLTGESVPV KTALP+    YN KE  NHTL+CGT I+Q RY+G E + AVVIRT
Sbjct: 708 NESMLTGESVPVTKTALPNNDKLYNVKEHGNHTLFCGTKIIQTRYYGTEPVLAVVIRT 765

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|328697992\|ref\|XP_003240506.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|328697990\|ref\|XP_003240505.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 1 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|340725047\|ref\|XP_003400886.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 1 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|340725049\|ref\|XP_003400887.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 2 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350398420\|ref\|XP_003485187.1\| PREDICTED: probable cation-transporting ATPase 13A3-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|332022550\|gb\|EGI62853.1\| Putative cation-transporting ATPase 13A3 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|307197098\|gb\|EFN78466.1\| Probable cation-transporting ATPase 13A3 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|190702506\|gb\|ACE75391.1\| cation-transporting ATPase [Glyptapanteles indiensis]	Back alignment and taxonomy information

>gi\|383854605\|ref\|XP_003702811.1\| PREDICTED: probable cation-transporting ATPase 13A3 isoform 2 [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		292
FB\|FBgn0052000		1451	CG32000 [Drosophila melanogast	0.804	0.161	0.466	1.2e-53
UNIPROTKB\|E2RGV7		1227	ATP13A3 "Uncharacterized prote	0.818	0.194	0.399	2.9e-44
UNIPROTKB\|J9P4P2		1257	ATP13A3 "Uncharacterized prote	0.818	0.190	0.399	3e-44
UNIPROTKB\|Q9H7F0		1226	ATP13A3 "Probable cation-trans	0.818	0.194	0.399	3.6e-44
MGI\|MGI:2685387		1219	Atp13a3 "ATPase type 13A3" [Mu	0.818	0.196	0.387	2.6e-43
UNIPROTKB\|F1SFG4		1226	ATP13A3 "Putative cation-trans	0.801	0.190	0.399	5.5e-43
UNIPROTKB\|E1BG26		1226	ATP13A3 "Uncharacterized prote	0.801	0.190	0.399	7e-43
UNIPROTKB\|G3V677		1219	LOC678704 "RCG36659, isoform C	0.818	0.196	0.379	1.9e-42
RGD\|1590881		1249	Atp13a3 "ATPase type 13A3" [Ra	0.818	0.191	0.379	1.9e-42
UNIPROTKB\|E1C7N6		1223	ATP13A3 "Uncharacterized prote	0.763	0.182	0.426	3.9e-42

FB\|FBgn0052000 CG32000 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 567 (204.7 bits), Expect = 1.2e-53, P = 1.2e-53
 Identities = 111/238 (46%), Positives = 150/238 (63%)

Query:    58 TELKVINVKKLMYVWSDQEQNFIKLVGLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEI 117
             + +++   K+L+Y W++    F ++ GLD  +  S  HQ  G    EQ  R IV+G NEI
Sbjct:   281 SSIRIFRCKQLVYAWNNNTNRFQRINGLDLNIPCSYYHQQRGLPVHEQISRRIVFGDNEI 340

Query:   118 NVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR-- 175
              VP+++  +L  LE LNPFY+FQ+F++ +WF   YYYY   I+ MSVFGI  SV+QT+  
Sbjct:   341 TVPLRDFKTLLFLEVLNPFYVFQLFSVILWFTYDYYYYACVILLMSVFGITVSVLQTKKN 400

Query:   176 QKSLHXXXXXXXXXXXXRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVN 235
             Q  L               KGL +E+PT  +VPGDII IP  GCTL CDA L+ GNCI++
Sbjct:   401 QDVLQKTVYNTGNAWVVDHKGLSKELPTRAIVPGDIIEIPSSGCTLHCDAILISGNCILD 460

Query:   236 ESMLTGESVPVMKTALPSQSDF-YNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292
             ESMLTGESVPV KT LPS+ D  +++ E   HTL+CGT ++Q RY G + + A VI T
Sbjct:   461 ESMLTGESVPVTKTPLPSKRDMIFDKTEHARHTLFCGTKVIQTRYIGSKKVLAFVINT 518

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB\|E2RGV7 ATP13A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P4P2 ATP13A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H7F0 ATP13A3 "Probable cation-transporting ATPase 13A3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2685387 Atp13a3 "ATPase type 13A3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SFG4 ATP13A3 "Putative cation-transporting ATPase 13A3" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BG26 ATP13A3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V677 LOC678704 "RCG36659, isoform CRA_c" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1590881 Atp13a3 "ATPase type 13A3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C7N6 ATP13A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		292
TIGR01657		1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	1e-56
TIGR01494		543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	8e-22
COG0474		917	COG0474, MgtA, Cation transport ATPase [Inorganic	3e-21
pfam00122		222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	2e-18
COG2217		713	COG2217, ZntA, Cation transport ATPase [Inorganic	3e-12
TIGR01657		1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	8e-11
TIGR01525		556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	2e-10
TIGR01512		536	TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb	2e-10
TIGR01524		867	TIGR01524, ATPase-IIIB_Mg, magnesium-translocating	6e-10
PRK15122		903	PRK15122, PRK15122, magnesium-transporting ATPase;	1e-07
TIGR01647		754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	2e-07
COG2216		681	COG2216, KdpB, High-affinity K+ transport system,	2e-07
PRK01122		679	PRK01122, PRK01122, potassium-transporting ATPase	4e-07
TIGR01497		675	TIGR01497, kdpB, K+-transporting ATPase, B subunit	5e-07
PRK11033		741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	5e-07
TIGR01511		572	TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans	9e-07
PRK10517		902	PRK10517, PRK10517, magnesium-transporting ATPase	2e-06
TIGR01517		944	TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-	2e-06
TIGR01523		1053	TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu	1e-05
TIGR01494		543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	5e-05
COG0474		917	COG0474, MgtA, Cation transport ATPase [Inorganic	2e-04
PRK14010		673	PRK14010, PRK14010, potassium-transporting ATPase	6e-04
TIGR01116		917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	8e-04

>gnl\|CDD\|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

 Score =  196 bits (499), Expect = 1e-56
 Identities = 91/243 (37%), Positives = 132/243 (54%), Gaps = 14/243 (5%)

Query: 63  INVKKLMYVWSDQEQNFIKLV-----GLDKGLTNSQLHQFNGFTFEEQFMRGIVYGKNEI 117
            + +K  + + ++E      +         G+ ++     NG T  +   R   YGKNEI
Sbjct: 98  FDFRKQRFSYHEKELKIFSPLPYLFKEKSFGVYSTCAGHSNGLTTGDIAQRKAKYGKNEI 157

Query: 118 NVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK 177
            +P+ +   L   E L+PFY+FQVF++ +W  + YYYY+  I+ MS   I  SV Q R++
Sbjct: 158 EIPVPSFLELLKEEVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRKQ 217

Query: 178 S--LHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPK-HGCTLACDATLLQGNCIV 234
              L D V+    V V R+ G +  + +  LVPGDI+ IP+    T+ CD+ LL G+CIV
Sbjct: 218 MQRLRDMVHKPQSVIVIRN-GKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSCIV 276

Query: 235 NESMLTGESVPVMKTALP----SQSDFYNEKEDVNHTLYCGTVILQAR-YHGDEYLHAVV 289
           NESMLTGESVPV+K  +P       D +  +    H L+ GT ILQ R Y GD    A+V
Sbjct: 277 NESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIV 336

Query: 290 IRT 292
           +RT
Sbjct: 337 VRT 339

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl\|CDD\|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>gnl\|CDD\|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase	Back alignment and domain information

>gnl\|CDD\|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

>gnl\|CDD\|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	Back alignment and domain information

>gnl\|CDD\|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

>gnl\|CDD\|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>gnl\|CDD\|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit	Back alignment and domain information

>gnl\|CDD\|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>gnl\|CDD\|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional	Back alignment and domain information

>gnl\|CDD\|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type	Back alignment and domain information

>gnl\|CDD\|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>gnl\|CDD\|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>gnl\|CDD\|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		292
KOG0208\|consensus		1140		100.0
TIGR01657		1054	P-ATPase-V P-type ATPase of unknown pump specifici	100.0
KOG0209\|consensus		1160		100.0
TIGR01523		1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	100.0
TIGR01522		884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	100.0
PRK10517		902	magnesium-transporting ATPase MgtA; Provisional	100.0
TIGR01524		867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	100.0
TIGR01647		755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	100.0
PRK15122		903	magnesium-transporting ATPase; Provisional	100.0
TIGR01106		997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	100.0
TIGR01517		941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	100.0
KOG0202\|consensus		972		99.98
COG0474		917	MgtA Cation transport ATPase [Inorganic ion transp	99.97
KOG0205\|consensus		942		99.96
KOG0204\|consensus		1034		99.95
TIGR01116		917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.93
PF00122		230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.89
TIGR01512		536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.88
TIGR01525		556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.88
PRK14010		673	potassium-transporting ATPase subunit B; Provision	99.88
KOG0203\|consensus		1019		99.88
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	99.87
PRK01122		679	potassium-transporting ATPase subunit B; Provision	99.87
TIGR01497		675	kdpB K+-transporting ATPase, B subunit. One sequen	99.87
TIGR01511		562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.86
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.85
PRK10671		834	copA copper exporting ATPase; Provisional	99.84
TIGR01652		1057	ATPase-Plipid phospholipid-translocating P-type AT	99.83
TIGR01494		499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.79
KOG0207\|consensus		951		99.79
PLN03190		1178	aminophospholipid translocase; Provisional	99.74
COG2216		681	KdpB High-affinity K+ transport system, ATPase cha	99.57
KOG0208\|consensus		1140		99.55
KOG0210\|consensus		1051		99.17
PF00690		69	Cation_ATPase_N: Cation transporter/ATPase, N-term	98.96
KOG0206\|consensus		1151		98.96
KOG0209\|consensus		1160		98.91
smart00831		64	Cation_ATPase_N Cation transporter/ATPase, N-termi	98.87
TIGR01657		1054	P-ATPase-V P-type ATPase of unknown pump specifici	98.48
COG0474		917	MgtA Cation transport ATPase [Inorganic ion transp	96.9
TIGR01523		1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	96.85
TIGR01522		884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	96.65
PRK10517		902	magnesium-transporting ATPase MgtA; Provisional	96.36
TIGR01116		917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	96.36
TIGR01524		867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	95.98
PRK15122		903	magnesium-transporting ATPase; Provisional	95.78
TIGR01517		941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	95.44
TIGR01106		997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	95.36
PF00122		230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	95.01
KOG0202\|consensus		972		93.44
TIGR01647		755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	92.86
TIGR01512		536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	92.49
PRK01122		679	potassium-transporting ATPase subunit B; Provision	91.49
TIGR01525		556	ATPase-IB_hvy heavy metal translocating P-type ATP	91.45
TIGR01511		562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	90.78
PRK14010		673	potassium-transporting ATPase subunit B; Provision	90.54
TIGR01494		499	ATPase_P-type ATPase, P-type (transporting), HAD s	88.36
TIGR01497		675	kdpB K+-transporting ATPase, B subunit. One sequen	86.97
PRK10671		834	copA copper exporting ATPase; Provisional	83.86
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	83.24
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	80.43

>KOG0208\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.9e-45  Score=355.91  Aligned_cols=237  Identities=43%  Similarity=0.652  Sum_probs=209.1

Q ss_pred             eccceeeEEEEeceEEEEecc-ccceEee---cCCCCCCChhhhhh-cCCCCHHHHHhhhcccccceecCCCCcHHHHHH
Q psy16230         55 TEVTELKVINVKKLMYVWSDQ-EQNFIKL---VGLDKGLTNSQLHQ-FNGFTFEEQFMRGIVYGKNEINVPIQNISSLFV  129 (292)
Q Consensus        55 tg~~~~r~f~~r~~ry~~~~~-~~~f~~~---~~~~~~~~~~~~~~-~~GLs~~~~~~r~~~~G~N~i~~~~~~~~~ll~  129 (292)
                      .+...+|+|.|++.+|.|..+ ...|.+.   ...+.....++.+. +.||+.+++.+|+..||+|.+..+.++++++++
T Consensus       111 ~~~~~~r~~~~kkl~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~gL~~~~~~~r~~iyG~N~i~l~ik~i~~iLv  190 (1140)
T KOG0208|consen  111 EGVGRVRDFAYKKLEYDPVSELRFIWPPFQKAEFRDDPRWYSTESYVSNGLERQEIIDRRIIYGRNVISLPIKSISQILV  190 (1140)
T ss_pred             cccchhhhhhhhcceeccccccceeeccccchhhccchhhhccceeccCCccHHHHHhHHhhcCCceeeeecccHHHHHH
Confidence            345668999999999999986 4444442   22222222333333 399999999999999999999999999999999


Q ss_pred             HHHhchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCceEEEEecCCeEEEEECCCCC
Q psy16230        130 LEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLV  207 (292)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~v~V~r~~g~~~~i~~~~Lv  207 (292)
                      +|.++|||+||++++++|..++|++||++|+++.+++++.+.++.|  .+++++|......|+|+|+ |.|++|+++|||
T Consensus       191 ~EvL~PfYlFQ~fSv~lW~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~~~V~V~R~-g~~~ti~S~eLV  269 (1140)
T KOG0208|consen  191 KEVLNPFYLFQAFSVALWLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFTCPVTVIRD-GFWETVDSSELV  269 (1140)
T ss_pred             HhccchHHHHHhHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEC-CEEEEEeccccc
Confidence            9999999999999999999999999999999999999999999999  7889999988889999998 999999999999


Q ss_pred             CCcEEEEccCCCEEeccEEEEeeeEEeecccccCCCcceeeccCCCCC-----CCCCcccCCCcEEecccEEEEEEEcCC
Q psy16230        208 PGDIIVIPKHGCTLACDATLLQGNCIVNESMLTGESVPVMKTALPSQS-----DFYNEKEDVNHTLYCGTVILQARYHGD  282 (292)
Q Consensus       208 ~GDii~i~~~G~~iP~D~~ll~G~~~vdeS~LTGES~pv~K~~~~~~~-----~~~~~~~~~~~~l~~Gt~vi~~~~~~~  282 (292)
                      |||++.++.+|-.+|||++|++|+|+||||||||||+||.|.|++...     ..+..+.+++|++|+||.++|++.+++
T Consensus       270 PGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g  349 (1140)
T KOG0208|consen  270 PGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLG  349 (1140)
T ss_pred             cccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCC
Confidence            999999964499999999999999999999999999999999998332     255668899999999999999999999


Q ss_pred             ccEEEEEEeC
Q psy16230        283 EYLHAVVIRT  292 (292)
Q Consensus       283 ~~v~avvi~T  292 (292)
                      +.++|+|+||
T Consensus       350 ~~v~a~V~RT  359 (1140)
T KOG0208|consen  350 GPVLAMVLRT  359 (1140)
T ss_pred             CceEEEEEec
Confidence            9999999998

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

>KOG0209\|consensus	Back alignment and domain information

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type	Back alignment and domain information

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase	Back alignment and domain information

>PRK10517 magnesium-transporting ATPase MgtA; Provisional	Back alignment and domain information

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase	Back alignment and domain information

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

>PRK15122 magnesium-transporting ATPase; Provisional	Back alignment and domain information

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit	Back alignment and domain information

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase	Back alignment and domain information

>KOG0202\|consensus	Back alignment and domain information

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0205\|consensus	Back alignment and domain information

>KOG0204\|consensus	Back alignment and domain information

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase	Back alignment and domain information

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase	Back alignment and domain information

>PRK14010 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>KOG0203\|consensus	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK01122 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01497 kdpB K+-transporting ATPase, B subunit	Back alignment and domain information

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase	Back alignment and domain information

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>KOG0207\|consensus	Back alignment and domain information

>PLN03190 aminophospholipid translocase; Provisional	Back alignment and domain information

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0208\|consensus	Back alignment and domain information

>KOG0210\|consensus	Back alignment and domain information

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0206\|consensus	Back alignment and domain information

>KOG0209\|consensus	Back alignment and domain information

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus	Back alignment and domain information

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type	Back alignment and domain information

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase	Back alignment and domain information

>PRK10517 magnesium-transporting ATPase MgtA; Provisional	Back alignment and domain information

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase	Back alignment and domain information

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase	Back alignment and domain information

>PRK15122 magnesium-transporting ATPase; Provisional	Back alignment and domain information

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase	Back alignment and domain information

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit	Back alignment and domain information

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG0202\|consensus	Back alignment and domain information

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>PRK01122 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase	Back alignment and domain information

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase	Back alignment and domain information

>PRK14010 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>TIGR01497 kdpB K+-transporting ATPase, B subunit	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		292
3b8c_A		885	Crystal Structure Of A Plasma Membrane Proton Pump		2e-05
3j08_A		645	High Resolution Helical Reconstruction Of The Bacte		2e-04
3j09_A		723	High Resolution Helical Reconstruction Of The Bacte		2e-04
2hc8_A		113	Structure Of The A. Fulgidus Copa A-Domain Length =		2e-04

>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885

Back alignment and structure

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 196 GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCI-VNESMLTGESVPVMKTALPSQ 254
           G + E     LVPGDI+ I K G  +  DA LL+G+ + V++S LTGES+PV K   P Q
Sbjct: 138 GKWSEQEAAILVPGDIVSI-KLGDIIPADARLLEGDPLKVDQSALTGESLPVTKH--PGQ 194
Query: 255 SDF 257
             F
Sbjct: 195 EVF 197

PyMOL of 3b8c

>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645

Back alignment and structure

>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723

Back alignment and structure

>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		292
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	1e-15
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	4e-15
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	6e-13
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	1e-12
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	1e-11
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	1e-10
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	2e-10
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	2e-10
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	2e-10
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920	Back alignment and structure

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 31/202 (15%)

Query: 98  NGFTFEEQFMRGIVYGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTG 157
            G T EE   R   YG N++    +N    F+   + P          +      +   G
Sbjct: 86  VGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFG 145

Query: 158 AIICMSVFGIVSSVIQTRQ-----KSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDII 212
            I  + +   V   +Q  Q       L  T+    K  V R  G  +E+    +VPGDI+
Sbjct: 146 VICGLLLLNAVVGFVQEFQAGSIVDELKKTLAL--KAVVLRD-GTLKEIEAPEVVPGDIL 202

Query: 213 VIPKHGCTLACDATLLQGNCI--VNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYC 270
            + + G  +  D  ++  +    V++S LTGES+ V             +K   +  ++ 
Sbjct: 203 QV-EEGTIIPADGRIVTDDAFLQVDQSALTGESLAV-------------DKHKGD-QVFA 247

Query: 271 GTVILQARYHGDEYLHAVVIRT 292
            + + +           V+  T
Sbjct: 248 SSAVKRGE------AFVVITAT 263

PyMOL of 1mhs

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885	Back alignment and structure

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028	Back alignment and structure

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		292
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	100.0
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	100.0
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.97
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	99.97
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.96
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	99.91
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	99.89
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	99.88
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.88
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	99.87
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	96.74
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	96.42
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	96.38
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	96.33
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	96.05
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	93.45
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	93.07
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	92.2
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	91.56
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	90.89

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A	Back alignment and structure

Probab=100.00  E-value=9.7e-33  Score=285.42  Aligned_cols=189  Identities=20%  Similarity=0.228  Sum_probs=159.7

Q ss_pred             hhhhhc--CCCCHHHHHhhhcccccceecCC-CCcHHHHHHHHHhchhHHHHHHHHHHhhhh-------------hHHHH
Q psy16230         92 SQLHQF--NGFTFEEQFMRGIVYGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAE-------------AYYYY  155 (292)
Q Consensus        92 ~~~~~~--~GLs~~~~~~r~~~~G~N~i~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  155 (292)
                      ..++++  +|||.+|+++|++.||+|+++.+ .+++|.+|++++++||.++++++.++.+..             ++++.
T Consensus        58 ~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~  137 (1028)
T 2zxe_A           58 NKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYL  137 (1028)
T ss_dssp             HHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHH
T ss_pred             HHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHH
Confidence            344444  79999999999999999999876 589999999999999988887766554322             35667


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCc-eEEEEecCCeEEEEECCCCCCCcEEEEccCCCEEeccEEEEeee-
Q psy16230        156 TGAIICMSVFGIVSSVIQTR--QKSLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-  231 (292)
Q Consensus       156 ~~~i~~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~v~V~r~~g~~~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~-  231 (292)
                      +++++++++++.+..+++++  .+.++++....+ .++|+|+ |++++|++++|+|||+|.+ ++||+|||||+|++|+ 
T Consensus       138 ~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rd-g~~~~I~~~~Lv~GDiV~l-~~Gd~IPaD~~ll~g~~  215 (1028)
T 2zxe_A          138 GVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRD-GEKSTINAEFVVAGDLVEV-KGGDRIPADLRIISAHG  215 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEET-TEEEEEEGGGCCTTCEEEE-ETTCBCCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEEC-CEEEEEEHHHCCcCCEEEE-CCCCEeeceEEEEeeCc
Confidence            78888889999999999988  666777666555 8999998 9999999999999999999 7999999999999995 


Q ss_pred             EEeecccccCCCcceeeccCCCCCCCCCcccCCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230        232 CIVNESMLTGESVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT  292 (292)
Q Consensus       232 ~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T  292 (292)
                      |.||||+|||||.|+.|.+++...++    .+++|++|+||.+.+|++      .++|++|
T Consensus       216 ~~VdeS~LTGES~pv~K~~~~~~~~~----~~~~n~v~~GT~v~~G~~------~~~V~~t  266 (1028)
T 2zxe_A          216 CKVDNSSLTGESEPQTRSPEFSSENP----LETRNIAFFSTNCVEGTA------RGVVVYT  266 (1028)
T ss_dssp             EEEECHHHHSCCSCEECCSSCCCSST----TTCSSEECTTCEEEEEEE------EEEEEEC
T ss_pred             EEEEcCccCCCCcceecccCCCCCCc----ccccceEEeCceEEcceE------EEEEEEe
Confidence            89999999999999999988764332    357899999999999764      7788776

PyMOL of 2zxe

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...	Back alignment and structure

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1	Back alignment and structure

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...	Back alignment and structure

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F	Back alignment and structure

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A	Back alignment and structure

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1	Back alignment and structure

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		292
d1wpga1		115	b.82.7.1 (A:125-239) Calcium ATPase, transduction	1e-08

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 187 DKVTVKRS-KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTGE 242
           +   V R+ +   + +    +VPGDI+ +   G  +  D  +L        V++S+LTGE
Sbjct: 1   EMGKVYRADRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGE 59

Query: 243 SVPVMKTALPSQSDFYNEKEDVNHTLYCGTVILQARYHGDEYLHAVVIRT 292
           SV V+K   P        ++  N       +              +V  T
Sbjct: 60  SVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIA-------AGKALGIVATT 102

PyMOL of d1wpga1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		292
d1wpga1		115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.91
d1wpga4		472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.87
d1wpga1		115	Calcium ATPase, transduction domain A {Rabbit (Ory	97.99

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.91  E-value=4.9e-25  Score=168.86  Aligned_cols=96  Identities=29%  Similarity=0.420  Sum_probs=80.0

Q ss_pred             eEEEEecCCeE--EEEECCCCCCCcEEEEccCCCEEeccEEEEeee---EEeecccccCCCcceeeccCCCCCCCCCccc
Q psy16230        188 KVTVKRSKGLY--EEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN---CIVNESMLTGESVPVMKTALPSQSDFYNEKE  262 (292)
Q Consensus       188 ~v~V~r~~g~~--~~i~~~~Lv~GDii~i~~~G~~iP~D~~ll~G~---~~vdeS~LTGES~pv~K~~~~~~~~~~~~~~  262 (292)
                      .++|+|+ |++  ++|++++|+|||+|.+ ++|++|||||+|++++   +.||||+|||||.|+.|.+.+.... .....
T Consensus         2 ~~kV~R~-g~~~v~~I~~~eLv~GDiv~l-~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~-~~~~~   78 (115)
T d1wpga1           2 MGKVYRA-DRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP-RAVNQ   78 (115)
T ss_dssp             EEEEEBS-SCSSCEEEEGGGCCTTCEEEE-ETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCT-TCCGG
T ss_pred             ceEEEEC-CCceEEEEeHHHCCCCCEEEE-CCCCEEeeceEEEEeeccceEEEEeecccceEEEEeeccccccc-ccccc
Confidence            5789998 653  6899999999999999 7999999999999754   6799999999999999988765432 22234


Q ss_pred             CCCcEEecccEEEEEEEcCCccEEEEEEeC
Q psy16230        263 DVNHTLYCGTVILQARYHGDEYLHAVVIRT  292 (292)
Q Consensus       263 ~~~~~l~~Gt~vi~~~~~~~~~v~avvi~T  292 (292)
                      ++.|++|+||.|.+|++      .++|++|
T Consensus        79 ~~~n~lf~GT~V~~G~~------~~~V~~t  102 (115)
T d1wpga1          79 DKKNMLFSGTNIAAGKA------LGIVATT  102 (115)
T ss_dssp             GCTTEECTTCEEEECEE------EEEEEEC
T ss_pred             cccceEEeccEEEeeeE------EEEEEEE
Confidence            57899999999998664      7888886

PyMOL of d1wpga1

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure