Psyllid ID: psy16263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPHSTRKSSL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHcccccccccccHHccccEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEcccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccHHHHHHHHHcccccccccccHHHHHEEEEEccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEEEcccccHEEEEEcccccccccc
Coil and Loop (DISEMBL)
msggldilslkedDVTKMLGAqthigsensdYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQIlphstrkssl
Flexible Loop (DISEMBL)
msggldilSLKEDDVTKMLGaqthigsensdyQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALvqilphstrkssl
Low Complexity Region (SEG)
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPHSTRKSSL
Disordered region (IsUnstruct)
*******************************YQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQIL*********
Disordered Region (DISOPRED)
*****DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPHSTR****
Disordered Region (DISEMBL)
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILP********
Disordered Region (DISPRO)
***GLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPHSTRKSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q0PXX8	301	40S ribosomal protein SA	N/A	N/A	0.401	0.149	1.0	1e-20
B4NPT0	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
Q29J14	270	40S ribosomal protein SA	yes	N/A	0.401	0.166	0.822	1e-15
B4GTK1	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
B3MRX2	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
B4PY37	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
Q0H6L0	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
Q0H6L1	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
B4I9F6	270	40S ribosomal protein SA	N/A	N/A	0.401	0.166	0.822	1e-15
P38979	313	40S ribosomal protein SA	no	N/A	0.401	0.143	0.822	1e-15

>sp|Q0PXX8|RSSA_DIACI 40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG
Sbjct: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
Diaphorina citri (taxid: 121845)

>sp|B4NPT0|RSSA_DROWI 40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila willistoni (taxid: 7260)

>sp|Q29J14|RSSA_DROPS 40S ribosomal protein SA OS=Drosophila pseudoobscura pseudoobscura GN=sta PE=3 SV=2

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GTK1|RSSA_DROPE 40S ribosomal protein SA OS=Drosophila persimilis GN=sta PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila persimilis (taxid: 7234)

>sp|B3MRX2|RSSA_DROAN 40S ribosomal protein SA OS=Drosophila ananassae GN=sta PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila ananassae (taxid: 7217)

>sp|B4PY37|RSSA_DROYA 40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila yakuba (taxid: 7245)

>sp|Q0H6L0|RSSA_DROTE 40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila teissieri (taxid: 7243)

>sp|Q0H6L1|RSSA_DROSI 40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila simulans (taxid: 7240)

>sp|B4I9F6|RSSA_DROSE 40S ribosomal protein SA OS=Drosophila sechellia GN=sta PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila sechellia (taxid: 7238)

>sp|P38979|RSSA_DROME 40S ribosomal protein SA OS=Drosophila melanogaster GN=sta PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 44 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 88

Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Required during oogenesis and imaginal development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
122066029	301	RecName: Full=40S ribosomal protein SA g	0.401	0.149	1.0	6e-19
12249035	239	stubarista [Drosophila yakuba]	0.401	0.188	0.822	2e-14
12249039	238	stubarista [Drosophila orena]	0.401	0.189	0.822	2e-14
12249037	241	stubarista [Drosophila erecta]	0.401	0.186	0.822	3e-14
38048381	209	similar to Drosophila melanogaster sta,	0.401	0.215	0.822	3e-14
195457346	270	GK14587 [Drosophila willistoni] gi|22989	0.401	0.166	0.822	4e-14
195162173	270	GL14373 [Drosophila persimilis] gi|19847	0.401	0.166	0.822	4e-14
194763916	270	GF21363 [Drosophila ananassae] gi|229891	0.401	0.166	0.822	5e-14
17136518	270	stubarista, isoform A [Drosophila melano	0.401	0.166	0.822	5e-14
45551198	313	stubarista, isoform D [Drosophila melano	0.401	0.143	0.822	5e-14

>gi|122066029|sp|Q0PXX8.1|RSSA_DIACI RecName: Full=40S ribosomal protein SA gi|110671460|gb|ABG81981.1| putative 40S ribosomal protein SA [Diaphorina citri]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG
Sbjct: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12249035|dbj|BAB20387.1| stubarista [Drosophila yakuba]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12249039|dbj|BAB20389.1| stubarista [Drosophila orena]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila orena

Species: Drosophila orena

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12249037|dbj|BAB20388.1| stubarista [Drosophila erecta]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38048381|gb|AAR10093.1| similar to Drosophila melanogaster sta, partial [Drosophila yakuba]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 15 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 59

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457346|ref|XP_002075534.1| GK14587 [Drosophila willistoni] gi|229891617|sp|B4NPT0.1|RSSA_DROWI RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|194171619|gb|EDW86520.1| GK14587 [Drosophila willistoni]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195162173|ref|XP_002021930.1| GL14373 [Drosophila persimilis] gi|198470906|ref|XP_001355430.2| GA13249 [Drosophila pseudoobscura pseudoobscura] gi|229891602|sp|B4GTK1.1|RSSA_DROPE RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|229891759|sp|Q29J14.2|RSSA_DROPS RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|194103828|gb|EDW25871.1| GL14373 [Drosophila persimilis] gi|198145676|gb|EAL32488.2| GA13249 [Drosophila pseudoobscura pseudoobscura]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763916|ref|XP_001964078.1| GF21363 [Drosophila ananassae] gi|229891598|sp|B3MRX2.1|RSSA_DROAN RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|190619003|gb|EDV34527.1| GF21363 [Drosophila ananassae]

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136518|ref|NP_476750.1| stubarista, isoform A [Drosophila melanogaster] gi|24639112|ref|NP_726744.1| stubarista, isoform B [Drosophila melanogaster] gi|195347652|ref|XP_002040366.1| GM18969 [Drosophila sechellia] gi|195469755|ref|XP_002099802.1| sta [Drosophila yakuba] gi|122091662|sp|Q0H6L1.1|RSSA_DROSI RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|122114899|sp|Q0H6L0.1|RSSA_DROTE RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|229891615|sp|B4I9F6.1|RSSA_DROSE RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|229891618|sp|B4PY37.1|RSSA_DROYA RecName: Full=40S ribosomal protein SA; AltName: Full=Protein stubarista gi|158031|gb|AAA28741.1| p40 [Drosophila melanogaster] gi|3292889|emb|CAA19839.1| EG:80H7.6 [Drosophila melanogaster] gi|21430162|gb|AAM50759.1| LD09376p [Drosophila melanogaster] gi|22831494|gb|AAF45638.2| stubarista, isoform A [Drosophila melanogaster] gi|22831495|gb|AAN09049.1| stubarista, isoform B [Drosophila melanogaster] gi|77682747|gb|ABB00655.1| stubarista [Drosophila simulans] gi|77682749|gb|ABB00656.1| stubarista [Drosophila teissieri] gi|115646347|gb|ABJ17027.1| IP12946p [Drosophila melanogaster] gi|194121794|gb|EDW43837.1| GM18969 [Drosophila sechellia] gi|194187326|gb|EDX00910.1| sta [Drosophila yakuba]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 1  MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 45

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45551198|ref|NP_726745.2| stubarista, isoform D [Drosophila melanogaster] gi|150421662|sp|P38979.2|RSSA_DROME RecName: Full=40S ribosomal protein SA; AltName: Full=K14; AltName: Full=Laminin receptor homolog; AltName: Full=Protein stubarista gi|45446772|gb|AAN09050.2| stubarista, isoform D [Drosophila melanogaster]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 44 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 88

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0003517	313	sta "stubarista" [Drosophila m	0.401	0.143	0.822	5.2e-15
RGD|71026	295	Rpsa "ribosomal protein SA" [R	0.437	0.166	0.6	1.4e-12
UNIPROTKB|P50890	296	RPSA "40S ribosomal protein SA	0.437	0.165	0.6	1.4e-12
UNIPROTKB|Q6P8D1	306	rpsa "40S ribosomal protein SA	0.437	0.160	0.6	1.6e-12
ZFIN|ZDB-GENE-040426-811	308	rpsa "ribosomal protein SA" [D	0.437	0.159	0.6	1.6e-12
UNIPROTKB|C9J9K3	264	RPSA "40S ribosomal protein SA	0.437	0.185	0.58	3.8e-12
UNIPROTKB|P26452	295	RPSA "40S ribosomal protein SA	0.437	0.166	0.58	6.7e-12
UNIPROTKB|J9JHJ2	295	RPSA "Uncharacterized protein"	0.437	0.166	0.58	6.7e-12
UNIPROTKB|P08865	295	RPSA "40S ribosomal protein SA	0.437	0.166	0.58	6.7e-12
UNIPROTKB|Q4GWZ2	295	RPSA "40S ribosomal protein SA	0.437	0.166	0.58	6.7e-12

FB|FBgn0003517 sta "stubarista" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
             MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct:    44 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 88

GO:0003735 "structural constituent of ribosome" evidence=ISS;IBA;IDA;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IBA;NAS

GO:0006412 "translation" evidence=ISS;IBA;NAS

GO:0043022 "ribosome binding" evidence=IPI

GO:0005840 "ribosome" evidence=NAS;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

RGD|71026 Rpsa "ribosomal protein SA" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSGGLD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0005055 "laminin receptor activity" evidence=TAS

GO:0005198 "structural molecule activity" evidence=IC

GO:0005604 "basement membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0006412 "translation" evidence=IBA

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030686 "90S preribosome" evidence=IBA

GO:0030855 "epithelial cell differentiation" evidence=IEP

GO:0031012 "extracellular matrix" evidence=IDA

GO:0043022 "ribosome binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043236 "laminin binding" evidence=ISO

UNIPROTKB|P50890 RPSA "40S ribosomal protein SA" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSGGLD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0006412 "translation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043236 "laminin binding" evidence=ISS

UNIPROTKB|Q6P8D1 rpsa "40S ribosomal protein SA" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSGGLD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006407 "rRNA export from nucleus" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

ZFIN|ZDB-GENE-040426-811 rpsa "ribosomal protein SA" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSGGLD+L +KE+DV K L A TH+G  N D+QMEQYVYKR++DG ++++
Sbjct:     1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDG-VYII 49

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|C9J9K3 RPSA "40S ribosomal protein SA" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

UNIPROTKB|P26452 RPSA "40S ribosomal protein SA" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043236 "laminin binding" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006407 "rRNA export from nucleus" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9JHJ2 RPSA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P08865 RPSA "40S ribosomal protein SA" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0006407 "rRNA export from nucleus" evidence=IBA

GO:0030686 "90S preribosome" evidence=IBA

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0043022 "ribosome binding" evidence=IPI

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=NAS

GO:0006412 "translation" evidence=IC;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q4GWZ2 RPSA "40S ribosomal protein SA" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 29/50 (58%), Positives = 40/50 (80%)

Query:     1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
             MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct:     1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

GO:0005886 "plasma membrane" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46769	RSSA_CAEEL	No assigned EC number	0.5294	0.4553	0.1847	yes	N/A
P50890	RSSA_CHICK	No assigned EC number	0.6	0.4375	0.1655	yes	N/A
P14206	RSSA_MOUSE	No assigned EC number	0.58	0.4375	0.1661	yes	N/A
P38982	RSSA_CRIGR	No assigned EC number	0.58	0.4375	0.1661	yes	N/A
P38983	RSSA_RAT	No assigned EC number	0.6	0.4375	0.1661	yes	N/A
P26452	RSSA_BOVIN	No assigned EC number	0.58	0.4375	0.1661	yes	N/A
Q7PZ81	RSSA_ANOGA	No assigned EC number	0.7777	0.4017	0.1578	yes	N/A
Q6P8D1	RSSA_XENTR	No assigned EC number	0.6	0.4375	0.1601	yes	N/A
B5FXT6	RSSA_TAEGU	No assigned EC number	0.6	0.4375	0.1655	yes	N/A
Q0PXX8	RSSA_DIACI	No assigned EC number	1.0	0.4017	0.1495	N/A	N/A
Q4GWZ2	RSSA_PIG	No assigned EC number	0.58	0.4375	0.1661	yes	N/A
P08865	RSSA_HUMAN	No assigned EC number	0.58	0.4375	0.1661	yes	N/A
Q29J14	RSSA_DROPS	No assigned EC number	0.8222	0.4017	0.1666	yes	N/A
Q803F6	RSSA_DANRE	No assigned EC number	0.6666	0.4017	0.1461	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
PTZ00254	249	PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov	4e-14
TIGR01012	196	TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol	9e-11
cd01425	193	cd01425, RPS2, Ribosomal protein S2 (RPS2), involv	0.002

>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGE 46
          +S G  +L+ KEDD+ KML  + HIG++N +  M++YVYKR  +G 
Sbjct: 1  VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGV 46

Length = 249

>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal)

 Score = 55.5 bits (134), Expect = 9e-11
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 11 KEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
              V   L A  HIG++N  + ME+++YK R+DG ++VL
Sbjct: 2  YLVPVDMYLAAGVHIGTQNKTFDMEKFIYKVRSDG-LYVL 40

This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 196

>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 18 MLGAQTHIGSENS--DYQMEQYVYKRRNDGEIFVL 50
          +L A  H+G +    + +M+ Y+Y  RN   I  L
Sbjct: 1  LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDL 35

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PTZ00254	249	40S ribosomal protein SA; Provisional	99.91
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	99.81
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	99.78
COG0052	252	RpsB Ribosomal protein S2 [Translation, ribosomal	99.72
PRK12311	326	rpsB 30S ribosomal protein S2/unknown domain fusio	99.59
PRK05299	258	rpsB 30S ribosomal protein S2; Provisional	99.58
TIGR01011	225	rpsB_bact ribosomal protein S2, bacterial type. TI	99.57
CHL00067	230	rps2 ribosomal protein S2	99.57
cd01425	193	RPS2 Ribosomal protein S2 (RPS2), involved in form	99.49
PF00318	211	Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0	99.48
KOG0830|consensus	254		99.39
KOG0832|consensus	251		98.98

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=99.91  E-value=3.7e-25  Score=177.34  Aligned_cols=90  Identities=29%  Similarity=0.436  Sum_probs=81.1

Q ss_pred             CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh----------eeeeEeec
Q psy16263          1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY----------RVSLILCN   62 (112)
Q Consensus         1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA----------rviv~s~r   62 (112)
                      ||+++++++++|+|+++||+||+|+|++++|++|++|||++|.||+|||||.        ||          +|++++.|
T Consensus         1 ~~~~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr   80 (249)
T PTZ00254          1 VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSR   80 (249)
T ss_pred             CCCCcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            7889999999999999999999999999999999999999888999999995        32          89999999


Q ss_pred             chhhHHHHhhc---Ccce--eeeeccchhhhhhhccc
Q psy16263         63 NIWQHMAELLD---GSKQ--VWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        63 p~gq~~v~~f~---~~~~--~~~~~~~~~~~~~~~~~   94 (112)
                      +++|++|++||   +..-  =||+||+    |||+..
T Consensus        81 ~~~~~~V~k~A~~tg~~~i~~Rw~pGt----lTN~~~  113 (249)
T PTZ00254         81 PYGQRAVLKFAQYTGASAIAGRFTPGT----FTNQIQ  113 (249)
T ss_pred             HHHHHHHHHHHHHhCCeEECCcccCCC----CCCccc
Confidence            99999999999   2221  1799999    999865

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=99.81  E-value=1.3e-20  Score=146.49  Aligned_cols=81  Identities=25%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             CHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh---------eeeeEeecchhhHHHHhhc
Q psy16263         11 KEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY---------RVSLILCNNIWQHMAELLD   73 (112)
Q Consensus        11 keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA---------rviv~s~rp~gq~~v~~f~   73 (112)
                      ++.++++||+||+|+|++++|++|++|||++|+||+|||||.        ||         +|+.++.|+++|++|++||
T Consensus         2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A   81 (196)
T TIGR01012         2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFA   81 (196)
T ss_pred             ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999996        33         8999999999999999999


Q ss_pred             ---Ccc--eeeeeccchhhhhhhcccc
Q psy16263         74 ---GSK--QVWWFHGQVLEVLTMFHNS   95 (112)
Q Consensus        74 ---~~~--~~~~~~~~~~~~~~~~~~~   95 (112)
                         +..  .-||.+|+    |||+...
T Consensus        82 ~~~g~~~v~~RWlgGt----LTN~~~~  104 (196)
T TIGR01012        82 KVTGARAIAGRFTPGT----FTNPMQK  104 (196)
T ss_pred             HHhCCceECCeeCCCC----CCCcccc
Confidence               222  12899999    9999753

TIGR01011 describes the related protein of organelles and bacteria.

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=99.78  E-value=1.7e-19  Score=140.90  Aligned_cols=77  Identities=23%  Similarity=0.378  Sum_probs=69.0

Q ss_pred             HHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh---------eeeeEeecchhhHHHHhhc---
Q psy16263         14 DVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY---------RVSLILCNNIWQHMAELLD---   73 (112)
Q Consensus        14 dV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA---------rviv~s~rp~gq~~v~~f~---   73 (112)
                      .+++||+||+|+|++++|++|++|||++|+||+|||||.        |+         +|+.++.|+++++++++||   
T Consensus        11 ~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~   90 (204)
T PRK04020         11 PLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVV   90 (204)
T ss_pred             eHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999996        33         8899999999999999999   


Q ss_pred             Cccee--eeeccchhhhhhhccc
Q psy16263         74 GSKQV--WWFHGQVLEVLTMFHN   94 (112)
Q Consensus        74 ~~~~~--~~~~~~~~~~~~~~~~   94 (112)
                      +...+  ||.+|+    |||+.+
T Consensus        91 g~~~v~~RWlgG~----LTN~~~  109 (204)
T PRK04020         91 GAKAITGRFIPGT----LTNPSL  109 (204)
T ss_pred             CCeeecCccCCCc----CcCcch
Confidence            33332  899999    999985

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=4e-18  Score=137.44  Aligned_cols=83  Identities=19%  Similarity=0.329  Sum_probs=70.9

Q ss_pred             HHHHHHHhhcceec--cccCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHh
Q psy16263         13 DDVTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAEL   71 (112)
Q Consensus        13 edV~kmLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~   71 (112)
                      ..+++||+||+|+|  ++.||+.|++|||+.| ||+|||||.        |           .+|+.|+.|.++|++|.+
T Consensus         4 vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~   82 (252)
T COG0052           4 VSMKQLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKE   82 (252)
T ss_pred             CCHHHHHHcCccccccccccCCcccccceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHH
Confidence            46889999999999  5889999999999999 999999995        2           289999999999999999


Q ss_pred             hc---Ccc--eeeeeccchhhhhhhccc---chhhhh
Q psy16263         72 LD---GSK--QVWWFHGQVLEVLTMFHN---SWSALV  100 (112)
Q Consensus        72 f~---~~~--~~~~~~~~~~~~~~~~~~---~~~~~~  100 (112)
                      ||   |..  .-||.+|+    ||||..   |...|-
T Consensus        83 ~A~r~g~~yV~~RwLgG~----LTN~~ti~~si~rl~  115 (252)
T COG0052          83 FAERTGAYYVNGRWLGGM----LTNFKTIRKSIKRLK  115 (252)
T ss_pred             HHHHhCCceecCcccCcc----ccCchhHHHHHHHHH
Confidence            99   443  34899999    999764   555553

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional

Probab=99.59  E-value=5.8e-16  Score=128.00  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=65.3

Q ss_pred             HHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhhc
Q psy16263         15 VTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELLD   73 (112)
Q Consensus        15 V~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f~   73 (112)
                      +++||+||+|+|+  ..||+.|++|||+.| +|+|||||.        |+           +|+.|+.|++++++|++||
T Consensus         1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R-~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A   79 (326)
T PRK12311          1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTR-NNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAA   79 (326)
T ss_pred             ChhHHhCCeecccCCCCCCCcccCceeccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence            4689999999995  578999999999999 599999995        21           9999999999999999999


Q ss_pred             -Cccee----eeeccchhhhhhhcccc
Q psy16263         74 -GSKQV----WWFHGQVLEVLTMFHNS   95 (112)
Q Consensus        74 -~~~~~----~~~~~~~~~~~~~~~~~   95 (112)
                       .+.+.    ||.+|+    |||+.+.
T Consensus        80 ~~~g~~yV~~RWlgG~----LTN~~ti  102 (326)
T PRK12311         80 KRSAQYFVNSRWLGGT----LTNWKTI  102 (326)
T ss_pred             HHhCCeeeCCeecCcc----cCCHHHH
Confidence             22232    899999    9998764

>PRK05299 rpsB 30S ribosomal protein S2; Provisional

Probab=99.58  E-value=1.3e-15  Score=121.78  Aligned_cols=79  Identities=20%  Similarity=0.343  Sum_probs=67.6

Q ss_pred             HHHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHh
Q psy16263         13 DDVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAEL   71 (112)
Q Consensus        13 edV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~   71 (112)
                      -.+++||+||+|+|+  ..||+.|++|||+.| +|+|||||.        |+           +|+.|+.+++++++|.+
T Consensus         4 ~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~   82 (258)
T PRK05299          4 VSMKQLLEAGVHFGHQTRRWNPKMKPYIFGER-NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAE   82 (258)
T ss_pred             CCHHHHHhcCcccccccCcCCCccccceeccc-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHH
Confidence            468999999999996  569999999999999 999999996        22           89999999999999999


Q ss_pred             hc-Ccce--e--eeeccchhhhhhhcccch
Q psy16263         72 LD-GSKQ--V--WWFHGQVLEVLTMFHNSW   96 (112)
Q Consensus        72 f~-~~~~--~--~~~~~~~~~~~~~~~~~~   96 (112)
                      || .+.+  +  ||.+|+    |||+....
T Consensus        83 ~A~~~~~~yv~~rWlgG~----LTN~~ti~  108 (258)
T PRK05299         83 EAERCGMPYVNHRWLGGM----LTNFKTIR  108 (258)
T ss_pred             HHHHhCCeeeCCeecCee----ccCHHHHH
Confidence            99 2222  2  899999    99987643

>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type

Probab=99.57  E-value=1.9e-15  Score=118.46  Aligned_cols=77  Identities=17%  Similarity=0.355  Sum_probs=66.2

Q ss_pred             HHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhh
Q psy16263         14 DVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELL   72 (112)
Q Consensus        14 dV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f   72 (112)
                      .+++||+||+|+|.  +.|++.|++|||+.| ||+|||||.        |+           +|+.++.+++.++++++|
T Consensus         3 ~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~   81 (225)
T TIGR01011         3 SMKDLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEE   81 (225)
T ss_pred             CHHHHHHcCcccccccCcCCcccccceeeee-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence            36899999999994  678999999999999 999999996        22           899999999999999999


Q ss_pred             c-Cccee----eeeccchhhhhhhcccc
Q psy16263         73 D-GSKQV----WWFHGQVLEVLTMFHNS   95 (112)
Q Consensus        73 ~-~~~~~----~~~~~~~~~~~~~~~~~   95 (112)
                      | .+.+.    ||.+|+    |||+...
T Consensus        82 a~~~~~~yv~~rWlgG~----LTN~~~i  105 (225)
T TIGR01011        82 AERCGMFYVNQRWLGGM----LTNFKTI  105 (225)
T ss_pred             HHHhCCcccCCeecCee----ccCHHHH
Confidence            9 23232    899999    9997763

TIGR01012 describes the archaeal and cytosolic forms.

>CHL00067 rps2 ribosomal protein S2

Probab=99.57  E-value=2.2e-15  Score=118.40  Aligned_cols=82  Identities=18%  Similarity=0.337  Sum_probs=69.7

Q ss_pred             CHHHHHHHHhhcceeccc--cCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHH
Q psy16263         11 KEDDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMA   69 (112)
Q Consensus        11 keedV~kmLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v   69 (112)
                      ....+++||+||+|+|++  .|++.|++|||++| ||+|||||.        |+           +|+.++.++..++++
T Consensus         6 ~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r-~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v   84 (230)
T CHL00067          6 WNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAER-NGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLV   84 (230)
T ss_pred             cccCHHHHHhcCeEeccCcCcCCCchhhhhhccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence            345689999999999975  99999999999998 899999996        22           899999999999999


Q ss_pred             Hhhc---Cccee--eeeccchhhhhhhcccchh
Q psy16263         70 ELLD---GSKQV--WWFHGQVLEVLTMFHNSWS   97 (112)
Q Consensus        70 ~~f~---~~~~~--~~~~~~~~~~~~~~~~~~~   97 (112)
                      +++|   +.--+  ||.+|+    |||+.+...
T Consensus        85 ~~~a~~~~~~yv~~rWigG~----LTN~~~i~~  113 (230)
T CHL00067         85 ASAAIRARCHYVNKRWLGGM----LTNWSTTKT  113 (230)
T ss_pred             HHHHHHhCCcCccCcccCCc----ccCHHHHHH
Confidence            9998   33222  899999    999887543

>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

Probab=99.49  E-value=1.8e-14  Score=109.56  Aligned_cols=74  Identities=19%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             HHhhcceeccccC--CcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhhcC-c
Q psy16263         18 MLGAQTHIGSENS--DYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELLDG-S   75 (112)
Q Consensus        18 mLaAGvHLGt~n~--n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f~~-~   75 (112)
                      ||+||+|+|.+..  ++.|++|||++| ||+|||||.        |           .+++.++.|+..+++++++|. +
T Consensus         1 ll~ag~h~G~~~~~wnp~m~~yiyg~r-~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~   79 (193)
T cd01425           1 LLEAGVHLGHKTRRWNPKMKPYIYGER-NGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT   79 (193)
T ss_pred             CCccceEeCCCcCCCCccchhheeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            5899999997666  999999999999 999999996        2           289999999999999999993 3


Q ss_pred             ce----eeeeccchhhhhhhcccch
Q psy16263         76 KQ----VWWFHGQVLEVLTMFHNSW   96 (112)
Q Consensus        76 ~~----~~~~~~~~~~~~~~~~~~~   96 (112)
                      .+    -||.+|+    |||+....
T Consensus        80 ~~~~i~~rw~~G~----LTN~~~~~  100 (193)
T cd01425          80 GSFYVNGRWLGGT----LTNWKTIR  100 (193)
T ss_pred             CCeeecCeecCCc----CCCHHHHH
Confidence            34    3899999    99987653

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an

>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.48  E-value=4.4e-14  Score=108.94  Aligned_cols=73  Identities=21%  Similarity=0.396  Sum_probs=63.0

Q ss_pred             HHhhcceeccc--cCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhhc---
Q psy16263         18 MLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELLD---   73 (112)
Q Consensus        18 mLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f~---   73 (112)
                      ||++|+|+|++  .|++.|++|||+.| +|+|||||.        |           .+++.++.++.+++++++|+   
T Consensus         1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r-~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~   79 (211)
T PF00318_consen    1 LLKAGVHLGHKKSRWNPKMKPYIYGKR-NGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRT   79 (211)
T ss_dssp             HHHHTTTSCBSSSSSSGGGGGGEEEEE-TTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHH
T ss_pred             CcccceecCCCcCCCCCCcccceeccc-CceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHh
Confidence            68999999986  79999999999999 999999996        2           28999999999999999999   


Q ss_pred             Cccee--eeeccchhhhhhhcccc
Q psy16263         74 GSKQV--WWFHGQVLEVLTMFHNS   95 (112)
Q Consensus        74 ~~~~~--~~~~~~~~~~~~~~~~~   95 (112)
                      +..-+  +|.+|+    |||+...
T Consensus        80 ~~~yi~~rWi~G~----LTN~~~i   99 (211)
T PF00318_consen   80 GSFYINERWIGGT----LTNWKTI   99 (211)
T ss_dssp             TCEEEESS-STTT----TTTTTHC
T ss_pred             CCCccCceecCcc----cCcHHHH
Confidence            44434  899999    9998743

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....

>KOG0830|consensus

Probab=99.39  E-value=1.6e-13  Score=110.95  Aligned_cols=59  Identities=31%  Similarity=0.378  Sum_probs=50.0

Q ss_pred             CCcccccccccccCCceeEeehh--------h----------heeeeEeecchhhHHHHhhcCcc-----eeeeeccchh
Q psy16263         30 SDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNNIWQHMAELLDGSK-----QVWWFHGQVL   86 (112)
Q Consensus        30 ~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp~gq~~v~~f~~~~-----~~~~~~~~~~   86 (112)
                      +++||++|||+||+||+|||||.        |          |+|.|+|.|+||||||.||+---     --+.+||+  
T Consensus         1 ~~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~--   78 (254)
T KOG0830|consen    1 LNFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGT--   78 (254)
T ss_pred             CCcccccccccccCCceEEeeccccHHHHHHHHHHHhhccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccc--
Confidence            57999999999999999999995        2          49999999999999999999221     22799999  


Q ss_pred             hhhhhc
Q psy16263         87 EVLTMF   92 (112)
Q Consensus        87 ~~~~~~   92 (112)
                        +|||
T Consensus        79 --ftn~   82 (254)
T KOG0830|consen   79 --FTNQ   82 (254)
T ss_pred             --cchH
Confidence              7765

>KOG0832|consensus

Probab=98.98  E-value=6e-10  Score=90.15  Aligned_cols=75  Identities=23%  Similarity=0.352  Sum_probs=56.8

Q ss_pred             HHHHHHhhcceec--cccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhh
Q psy16263         14 DVTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELL   72 (112)
Q Consensus        14 dV~kmLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f   72 (112)
                      +|++|+.||+|+|  +..|++.|+||||+.| .|+|||||.        |+           -++-+..|+---.-|+.-
T Consensus        49 ~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R-~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~a  127 (251)
T KOG0832|consen   49 SVEELFNAGVHLGHKTGKWNPRMKPYIYGKR-LGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERA  127 (251)
T ss_pred             cHHHHHhccccccccccccCcccchhhcccc-cCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHH
Confidence            7999999999999  4567999999999999 799999995        22           455555565544555544


Q ss_pred             c-----Ccceeeeeccchhhhhhhcc
Q psy16263         73 D-----GSKQVWWFHGQVLEVLTMFH   93 (112)
Q Consensus        73 ~-----~~~~~~~~~~~~~~~~~~~~   93 (112)
                      |     -+-.-+|-+|.    |||-.
T Consensus       128 A~r~~gy~~~~~w~~G~----lTN~~  149 (251)
T KOG0832|consen  128 ARRAGGYSHNRKWLGGL----LTNAR  149 (251)
T ss_pred             HHHhcCceeeeeeccce----eecch
Confidence            4     33445899999    88853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
2zkq_b	295	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-13
3bch_A	253	Crystal Structure Of The Human Laminin Receptor Pre		6e-12
3iz6_A	305	Localization Of The Small Subunit Ribosomal Protein		3e-08
3zey_C	277	High-resolution Cryo-electron Microscopy Structure		9e-06

>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 295

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
          MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct: 1  MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49

>pdb|3BCH|A Chain A, Crystal Structure Of The Human Laminin Receptor Precursor Length = 253

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 2  SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
          SG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG I+++
Sbjct: 35 SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 82

>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 305

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 8  LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
          LS +E D+  ML A  H+G++N D+QME+YVYKRR DG I+++
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDG-IYII 53

>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          +S G  +L +KE DV K+L    H+G++NS   M++Y++ R +DG
Sbjct: 37 VSSGAKVLRMKESDVQKLLAMHCHLGTKNSSSAMKKYIHGRTSDG 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	3e-19
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	9e-18
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	2e-16
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	7e-14
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	7e-13
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	2e-10

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295

 Score = 79.0 bits (194), Expect = 3e-19
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          MSG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG
Sbjct: 1  MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG 45

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 75.2 bits (184), Expect = 9e-18
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
                 LS +E D+  ML A  H+G++N D+QME+YVYKRR DG
Sbjct: 5  GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDG 49

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
           SG LD+L +KE+DV K L A TH+G  N D+QMEQY+YKR++DG
Sbjct: 34 SSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG 78

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 6  DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
              L  +D   +L A TH+G+ N     E YV+  R DG
Sbjct: 5  ATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDG 44

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241

 Score = 61.4 bits (149), Expect = 7e-13
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 8  LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
             K+DD+ ++L +  H  + N + QM++Y+  +  +G
Sbjct: 3  TQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNG 40

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 1  MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
          +    + L          L A  HIG++     M+++++K R DG
Sbjct: 3  LEKEYEYL----VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDG 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	99.91
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	99.91
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	99.9
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	99.89
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	99.88
3j20_B	202	30S ribosomal protein S2P; archaea, archaeal, KINK	99.85
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	99.83
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	99.77
3r8n_B	218	30S ribosomal protein S2; protein biosynthesis, RN	99.76
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	99.75

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B

Probab=99.91  E-value=1.5e-25  Score=178.71  Aligned_cols=89  Identities=26%  Similarity=0.325  Sum_probs=79.3

Q ss_pred             CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeec
Q psy16263          1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCN   62 (112)
Q Consensus         1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~r   62 (112)
                      || .+++|+++|+|+++||+||+|||+++||++|++|||++|+||+|||||.        |          ++|++++.|
T Consensus         1 ~~-~~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk   79 (252)
T 3u5c_A            1 MS-LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSR   79 (252)
T ss_dssp             -C-CCSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECS
T ss_pred             CC-cchhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            44 5899999999999999999999999999999999999999999999995        2          289999999


Q ss_pred             chhhHHHHhhc---Ccc--eeeeeccchhhhhhhccc
Q psy16263         63 NIWQHMAELLD---GSK--QVWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        63 p~gq~~v~~f~---~~~--~~~~~~~~~~~~~~~~~~   94 (112)
                      +++|++|.+|+   |..  .-||++|+    ||||.-
T Consensus        80 ~~~q~~V~k~A~~~g~~~v~~rwlgGt----LTN~~t  112 (252)
T 3u5c_A           80 TFGQRAVLKFAAHTGATPIAGRFTPGS----FTNYIT  112 (252)
T ss_dssp             HHHHHHHHHHHHHSSCEEEESCCCTTS----SSCTTS
T ss_pred             cHHHHHHHHHHHHhCCceecCcccCCc----ccChhh
Confidence            99999999999   222  23799999    999875

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=1.2e-25  Score=183.54  Aligned_cols=89  Identities=29%  Similarity=0.406  Sum_probs=80.3

Q ss_pred             CCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecc
Q psy16263          2 SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNN   63 (112)
Q Consensus         2 s~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp   63 (112)
                      ++++++|+++|+|+++||+||+|||++++|++|++|||++|+||||||||.        |          ++|++++.|+
T Consensus         6 ~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~   85 (305)
T 3iz6_A            6 GAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP   85 (305)
T ss_dssp             CSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEEECCSH
T ss_pred             ccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence            567899999999999999999999999999999999999999999999995        2          2899999999


Q ss_pred             hhhHHHHhhc---Ccc--eeeeeccchhhhhhhccc
Q psy16263         64 IWQHMAELLD---GSK--QVWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        64 ~gq~~v~~f~---~~~--~~~~~~~~~~~~~~~~~~   94 (112)
                      ++|++|.+|+   |..  .-||++|+    ||||.-
T Consensus        86 ~aq~aV~k~A~~tG~~yV~~RWlgGt----LTN~~t  117 (305)
T 3iz6_A           86 YGQRAVLKFAQYTGAHAIAGRHTPGT----FTNQLQ  117 (305)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCCTTT----TTTTTT
T ss_pred             HHHHHHHHHHHHhCCccccCcccCCc----ccCccc
Confidence            9999999999   222  23899999    999875

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.90  E-value=7.9e-25  Score=177.64  Aligned_cols=90  Identities=40%  Similarity=0.600  Sum_probs=69.3

Q ss_pred             CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeec
Q psy16263          1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCN   62 (112)
Q Consensus         1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~r   62 (112)
                      ||+++++++++++++++||+||+|+|++++|++|++|||++|+||+|||||.        |          .+|++++.|
T Consensus         1 m~~~~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk   80 (295)
T 2zkq_b            1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSR   80 (295)
T ss_dssp             ------------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECS
T ss_pred             CCCccccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            7889999999999999999999999999999999999999999999999995        2          289999999


Q ss_pred             chhhHHHHhhc---Cccee--eeeccchhhhhhhccc
Q psy16263         63 NIWQHMAELLD---GSKQV--WWFHGQVLEVLTMFHN   94 (112)
Q Consensus        63 p~gq~~v~~f~---~~~~~--~~~~~~~~~~~~~~~~   94 (112)
                      +++|++|++|+   |..-+  ||.+|+    |||+.-
T Consensus        81 ~~aq~~V~k~A~~~g~~yv~~RWlgG~----LTN~~t  113 (295)
T 2zkq_b           81 NTGQRAVLKFAAATGATPIAGRFTPGT----FTNQIQ  113 (295)
T ss_dssp             HHHHHHHHHHHHHHCCEEEESSCCCC-----CCCTTC
T ss_pred             HHHHHHHHHHHHHhCCceecceEeccc----ccCccc
Confidence            99999999998   33322  899999    999864

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}

Probab=99.89  E-value=4.2e-24  Score=170.37  Aligned_cols=89  Identities=39%  Similarity=0.567  Sum_probs=74.3

Q ss_pred             CCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecc
Q psy16263          2 SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNN   63 (112)
Q Consensus         2 s~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp   63 (112)
                      |+++++++++|+++++||+||+|+|+++||++|++|||++|+||+|||||.        |          ++|++++.|+
T Consensus        35 ~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~  114 (253)
T 3bch_A           35 SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRN  114 (253)
T ss_dssp             -------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSH
T ss_pred             ccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            457889999999999999999999999999999999999999999999995        2          2799999999


Q ss_pred             hhhHHHHhhc---Ccce--eeeeccchhhhhhhccc
Q psy16263         64 IWQHMAELLD---GSKQ--VWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        64 ~gq~~v~~f~---~~~~--~~~~~~~~~~~~~~~~~   94 (112)
                      ++|++|.+||   |..-  -||.+|+    |||+.-
T Consensus       115 ~aq~~V~~~A~~~g~~yv~~RWlgG~----LTN~~~  146 (253)
T 3bch_A          115 TGQRAVLKFAAATGATPIAGRFTPGT----FTNQIQ  146 (253)
T ss_dssp             HHHHHHHHHHHHHCCEEEESCCCTTT----TTCCSC
T ss_pred             HHHHHHHHHHHHhCCeeecceecCCc----ccCccc
Confidence            9999999998   3332  3899999    999864

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B

Probab=99.88  E-value=1.4e-23  Score=165.93  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=76.7

Q ss_pred             ccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecchhhHH
Q psy16263          7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNNIWQHM   68 (112)
Q Consensus         7 iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp~gq~~   68 (112)
                      +|+|++.++++||+||+|+|+++||++|++|||++|+||+|||||.        |          ++|++++.|+++|++
T Consensus         2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~   81 (241)
T 2xzm_B            2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA   81 (241)
T ss_dssp             CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred             cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            5788999999999999999999999999999999999999999995        2          289999999999999


Q ss_pred             HHhhc---Cccee---eeeccchhhhhhhccc
Q psy16263         69 AELLD---GSKQV---WWFHGQVLEVLTMFHN   94 (112)
Q Consensus        69 v~~f~---~~~~~---~~~~~~~~~~~~~~~~   94 (112)
                      |.+||   |..-+   ||.+|+    |||+.-
T Consensus        82 V~~~A~~~g~~yv~~~RWlgG~----LTN~~t  109 (241)
T 2xzm_B           82 AIKFAGYTHCKSTSSSRWTPGT----LTNYQT  109 (241)
T ss_dssp             HHHHHHHHTCBCCCCSSCCTTT----TTCTTC
T ss_pred             HHHHHHHhCCEEeccccccCCc----ccCccc
Confidence            99998   66656   999999    999865

>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.85  E-value=2.8e-22  Score=155.03  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             HHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h---------heeeeEeecchhhHHHHhhc---
Q psy16263         14 DVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C---------YRVSLILCNNIWQHMAELLD---   73 (112)
Q Consensus        14 dV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A---------Arviv~s~rp~gq~~v~~f~---   73 (112)
                      .+++||+||+|+|++++|++|+||||++|+||+|||||.        |         ++|++++.|+++|++|.+||   
T Consensus         8 ~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~   87 (202)
T 3j20_B            8 PLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPVKKFGEVT   87 (202)
T ss_dssp             HHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSCSSCEEEECCCTTTHHHHHHHHHHH
T ss_pred             cHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhhCCCeEEEEecChHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999995        2         38999999999999999999   


Q ss_pred             Cc--ceeeeeccchhhhhhhcc
Q psy16263         74 GS--KQVWWFHGQVLEVLTMFH   93 (112)
Q Consensus        74 ~~--~~~~~~~~~~~~~~~~~~   93 (112)
                      |.  -.-||++|+    ||||.
T Consensus        88 g~~~v~~rw~gG~----lTN~~  105 (202)
T 3j20_B           88 GARAIPGRFLPGT----MTNPA  105 (202)
T ss_dssp             SCCCCCSSCCSSS----SSCSS
T ss_pred             CCceeCceecCCC----cccHh
Confidence            22  234899999    99986

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A

Probab=99.83  E-value=2.7e-21  Score=150.18  Aligned_cols=77  Identities=21%  Similarity=0.341  Sum_probs=69.6

Q ss_pred             HHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h---------heeeeEeecchhhHHHHhhc--
Q psy16263         13 DDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C---------YRVSLILCNNIWQHMAELLD--   73 (112)
Q Consensus        13 edV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A---------Arviv~s~rp~gq~~v~~f~--   73 (112)
                      .++++||+||+|+|++++|++|+||||++|+||+|||||.        |         ++|++++.|+++|++|.+||  
T Consensus        11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i~~~~iLfVgTk~~~~~~V~~~A~~   90 (208)
T 1vi6_A           11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKV   90 (208)
T ss_dssp             SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHH
T ss_pred             hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999996        2         38999999999999999998  


Q ss_pred             -Cccee--eeeccchhhhhhhcc
Q psy16263         74 -GSKQV--WWFHGQVLEVLTMFH   93 (112)
Q Consensus        74 -~~~~~--~~~~~~~~~~~~~~~   93 (112)
                       |..-+  ||.+|+    |||+.
T Consensus        91 ~g~~~v~~rwlgG~----LTN~~  109 (208)
T 1vi6_A           91 VGSDYIVGRFIPGT----LTNPM  109 (208)
T ss_dssp             HCCEEEESSCCTTT----TTCTT
T ss_pred             hCCeeecCEECCCc----ccChh
Confidence             44333  899999    99987

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.77  E-value=1.2e-19  Score=142.42  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             HHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhh
Q psy16263         14 DVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELL   72 (112)
Q Consensus        14 dV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f   72 (112)
                      ++++||+||+|+|+  ++||++|+||||++| ||+|||||.        |           .+|+.++.++++|++|.+|
T Consensus         5 ~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~   83 (231)
T 3bbn_B            5 NLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARA   83 (231)
T ss_dssp             SSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHH
T ss_pred             CHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH
Confidence            67899999999995  789999999999999 999999995        2           1899999999999999999


Q ss_pred             c---Cccee--eeeccchhhhhhhccc
Q psy16263         73 D---GSKQV--WWFHGQVLEVLTMFHN   94 (112)
Q Consensus        73 ~---~~~~~--~~~~~~~~~~~~~~~~   94 (112)
                      |   |.--+  ||.+|+    |||+..
T Consensus        84 A~~~g~~yv~~rWlgG~----LTN~~t  106 (231)
T 3bbn_B           84 AIRARCHYVNKKWLGGM----LTNWST  106 (231)
T ss_dssp             HHHHTCEECCSSCCSCS----SSCHHH
T ss_pred             HHHhCCccccccccCCC----CcCHHH
Confidence            8   44344  899999    999874

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...

Probab=99.75  E-value=9.6e-20  Score=145.01  Aligned_cols=77  Identities=23%  Similarity=0.387  Sum_probs=66.8

Q ss_pred             HHHHHHHhhcceeccc--cCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHh
Q psy16263         13 DDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAEL   71 (112)
Q Consensus        13 edV~kmLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~   71 (112)
                      .++++||+||+|+|++  +||++|++|||++| ||+|||||.        |           .+|+.|+.++++|++|.+
T Consensus         5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~   83 (256)
T 2vqe_B            5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM   83 (256)
T ss_dssp             -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred             ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            4678899999999974  88999999999999 999999995        2           189999999999999999


Q ss_pred             hc---Cccee--eeeccchhhhhhhccc
Q psy16263         72 LD---GSKQV--WWFHGQVLEVLTMFHN   94 (112)
Q Consensus        72 f~---~~~~~--~~~~~~~~~~~~~~~~   94 (112)
                      ||   |.--+  ||.+|+    |||+.-
T Consensus        84 ~A~~~g~~yv~~RWlgG~----LTN~~t  107 (256)
T 2vqe_B           84 EAERAGMPYVNQRWLGGM----LTNFKT  107 (256)
T ss_dssp             TTTSSSCCEECSCCCTTT----TTTHHH
T ss_pred             HHHHhCCeeecCeeCCCc----ccCHHH
Confidence            98   33334  899999    999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1vi6a_	193	c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch	1e-06

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 15 VTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLDG 74
              L A  HIG++     M+++++K R DG   + V+  R          + ++     
Sbjct: 8  PDDYLAAGVHIGTQIKTGDMKKFIFKVRQDG---LYVLDIRKLDERIRVAAKFLSRYEPS 64

Query: 75 SKQVWWFHGQVLEVLTMF 92
             +        + + MF
Sbjct: 65 KILLVAARQYAHKPVQMF 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1vi6a_	193	Ribosomal protein S2 {Archaeon Archaeoglobus fulgi	99.76
d2uubb1	234	Ribosomal protein S2 {Thermus thermophilus [TaxId:	99.59
d2gy9b1	218	Ribosomal protein S2 {Escherichia coli [TaxId: 562	99.48

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.76  E-value=2.1e-19  Score=135.92  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=67.3

Q ss_pred             HHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh---------eeeeEeecchhhHHHHhhc---
Q psy16263         14 DVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY---------RVSLILCNNIWQHMAELLD---   73 (112)
Q Consensus        14 dV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA---------rviv~s~rp~gq~~v~~f~---   73 (112)
                      .+++||+||+|+|+++++.+|++|||++|+||+|||||.        |+         +|+.++.|+++++++++||   
T Consensus         7 ~i~~ll~agvH~G~~~~~~~M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~~~~~ILfVgtk~~~~~~v~~~A~~~   86 (193)
T d1vi6a_           7 PPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVV   86 (193)
T ss_dssp             CHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHH
T ss_pred             eHHHHHHhCeeeCCCcCCCCCccccccccCCCeEEeeHHHHHHHHHHHHHHHHHhccCceEEeecccchHHHHHHHHHhc
Confidence            478999999999999999999999999999999999995        22         9999999999999999999   


Q ss_pred             Ccce--eeeeccchhhhhhhcc
Q psy16263         74 GSKQ--VWWFHGQVLEVLTMFH   93 (112)
Q Consensus        74 ~~~~--~~~~~~~~~~~~~~~~   93 (112)
                      +..-  -||.+|+    |||..
T Consensus        87 g~~~v~~RWlgG~----LTN~~  104 (193)
T d1vi6a_          87 GSDYIVGRFIPGT----LTNPM  104 (193)
T ss_dssp             CCEEEESSCCTTT----TTCTT
T ss_pred             CCCcccccccCCc----ccchH
Confidence            3333  3899999    99854

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=7.2e-17  Score=124.39  Aligned_cols=75  Identities=21%  Similarity=0.433  Sum_probs=64.6

Q ss_pred             HHHHHhhcceec--cccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhhc
Q psy16263         15 VTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELLD   73 (112)
Q Consensus        15 V~kmLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f~   73 (112)
                      |++||+||+|+|  ++.||+.|++|||+.| ||+|||||.        |+           +|+.++.++..+.++.++|
T Consensus         1 I~~ll~ag~H~Gh~~~~wnpkm~~yIyg~r-ngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A   79 (234)
T d2uubb1           1 VKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEA   79 (234)
T ss_dssp             CCCSSCTTSTTBCCCSCCCGGGGGGEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHH
T ss_pred             ChhHHhCCCcccCCcCcCCCCCccceeccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhcCCceeEEeccHHHHHHHHHHH
Confidence            357899999999  6799999999999998 899999995        21           8999999999999999998


Q ss_pred             ---Ccc--eeeeeccchhhhhhhccc
Q psy16263         74 ---GSK--QVWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        74 ---~~~--~~~~~~~~~~~~~~~~~~   94 (112)
                         +..  .-||.+|+    |||+..
T Consensus        80 ~~~~~~yv~~RWlgG~----LTN~~t  101 (234)
T d2uubb1          80 ERAGMPYVNQRWLGGM----LTNFKT  101 (234)
T ss_dssp             HSSSCCEECSCCCTTT----TTTHHH
T ss_pred             HHhCCEEeccceeCCc----cccccc
Confidence               222  23899999    999853

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.2e-15  Score=113.49  Aligned_cols=72  Identities=15%  Similarity=0.284  Sum_probs=61.9

Q ss_pred             HHhhcceec--cccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhhc-Cc
Q psy16263         18 MLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELLD-GS   75 (112)
Q Consensus        18 mLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f~-~~   75 (112)
                      ||+||+|+|  ++.||+.|++|||+.| +|+|||||.        |+           .|+.++.++..+..+++++ .+
T Consensus         1 ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~~T~~~L~~A~~~l~~~~~~~g~iLfVgTk~~~~~~i~~~a~~~   79 (218)
T d2gy9b1           1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC   79 (218)
T ss_dssp             SCCTTSSSCCCSSCCCGGGGGGBCCCB-TTBCCBCHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSTTSHHHHHHHHHHT
T ss_pred             CCccccccCcccCccCCCcccceeccc-CCcEEEcHHHHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhHHHHHHHHhc
Confidence            589999999  5799999999999999 899999995        21           8999999999999999998 11


Q ss_pred             ----ceeeeeccchhhhhhhccc
Q psy16263         76 ----KQVWWFHGQVLEVLTMFHN   94 (112)
Q Consensus        76 ----~~~~~~~~~~~~~~~~~~~   94 (112)
                          -.-||.+|+    |||+..
T Consensus        80 ~~~yvn~rWlgG~----LTN~~~   98 (218)
T d2gy9b1          80 DQFFVNHRWLGGM----LTNWKT   98 (218)
T ss_dssp             TCEEECSCCCTTT----TTTHHH
T ss_pred             CCceecceeecCc----ccchhh
Confidence                235899999    999754