Psyllid ID: psy16308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADREANGKRRPHLNTRKGEEEEENRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHLELSLSS
Secondary Structure (PSIPRED)
cccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEcccccEEEEEEEccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccHcccHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccEccccccccccHHHHHHHHHHHHHHHHHccccccccccccHcccccccHHHHHHHHHHcHEHEHHHHHHccccccccccHHHHHHHHcccccccccccEHHHcccccHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHEHccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTfcgwlvlgpyhmkfrslsTTSECLFALINgddmfatfsimpkKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEiqedetnhdfwssietasFSFREQIHKMHKSIALATRadreangkrrphlntrkgeeeeenrkfpdynlSYRVILVLNQstitrserpfvkkkkrllggkspktglrtweyrkrppevlcDVCFYWAQAlnssnnrkqrcvlsnqKTWCTVIIKKNIHFPALATHLELSLSS
Flexible Loop (DISEMBL)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIAlatradreangkrrphlntrkgeeeeenrkfpdynlsYRVILVLnqstitrserpfvkkkkrllggkspktglrtweyrkrpPEVLCDVCFYWAQALnssnnrkqrcVLSNQKTWCTVIIKKNIHFPALATHLELSLSS
Low Complexity Region (SEG)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWylriylysfislyiyvilslfisVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADREANGKRRPHLNTRKGEEEEENRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHLELSLSS
Disordered region (IsUnstruct)
****LEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHK*************************************PDYNLSYRVILVLNQSTITR*******************TGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHL******
Disordered Region (DISOPRED)
*EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI************VIKFMGEIQ******************************************************************LSYRVILVLNQ*************************************EVLCDVCFYWAQAL**********VLSNQKTWCTVIIKKNIHFPALATHLELSL**
Disordered Region (DISEMBL)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADREANGKRRPHLNT**********KFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHLELSLSS
Disordered Region (DISPRO)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQED*T**********ASFSFREQIHKMHKSIALATRA**********H****KGEEEEENRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHLELSL**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADREANGKRRPHLNTRKGEEEEENRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKKNIHFPALATHLELSLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q8R4F0	553	Mucolipin-3 OS=Mus muscul	yes	N/A	0.530	0.356	0.567	3e-66
Q8IZK6	566	Mucolipin-2 OS=Homo sapie	yes	N/A	0.530	0.348	0.557	3e-65
Q8K595	566	Mucolipin-2 OS=Mus muscul	no	N/A	0.517	0.339	0.546	1e-62
Q8TDD5	553	Mucolipin-3 OS=Homo sapie	no	N/A	0.539	0.361	0.569	3e-62
Q99J21	580	Mucolipin-1 OS=Mus muscul	no	N/A	0.549	0.351	0.511	7e-58
Q9GZU1	580	Mucolipin-1 OS=Homo sapie	no	N/A	0.549	0.351	0.507	9e-58
Q60HE8	580	Mucolipin-1 OS=Macaca fas	N/A	N/A	0.549	0.351	0.507	1e-57

>sp|Q8R4F0|MCLN3_MOUSE Mucolipin-3 OS=Mus musculus GN=Mcoln3 PE=1 SV=1

 Score =  252 bits (644), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 156/199 (78%), Gaps = 2/199 (1%)

Query: 4   RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
           ++EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct: 334 QMEFINGWYIMIIISDILTIVGSVLKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query: 64  LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
           LGFF  YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct: 392 LGFFAKYNLLILTLQAALPNVMRFCCCAAMIYLGYCFCGWIVLGPYHEKFRSLNRVSECL 451

Query: 124 FALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY 183
           F+LINGDDMF+TF+ M +KS ++W + R+YLYSFISL+IY+ILSLFI++I D YETIK Y
Sbjct: 452 FSLINGDDMFSTFAKMQQKSYLVWLFSRVYLYSFISLFIYMILSLFIALITDTYETIKHY 511

Query: 184 YINGFPKSDVIKFMGEIQE 202
             +GFP++++ KF+ E ++
Sbjct: 512 QQDGFPETELRKFIAECKD 530

Mus musculus (taxid: 10090)

>sp|Q8IZK6|MCLN2_HUMAN Mucolipin-2 OS=Homo sapiens GN=MCOLN2 PE=2 SV=2

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 159/199 (79%), Gaps = 2/199 (1%)

Query: 6   EFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLG 65
           EF+N WYV++I +D++ I+GS +K +I+ K      ++LCS+FLGT  LLVW GV+RYLG
Sbjct: 341 EFINGWYVLVIISDLMTIIGSILKMEIKAKNLTN--YDLCSIFLGTSTLLVWVGVIRYLG 398

Query: 66  FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFA 125
           +F+ YNV+ILT++ + PKV RF  CA +IY G+TFCGW+VLGPYH KF +L+T +ECLF+
Sbjct: 399 YFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFS 458

Query: 126 LINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185
           L+NGDDMFATF+ + +KS ++W + R+YLYSFISL+IY+ILSLFI++I D+Y+TIK++  
Sbjct: 459 LVNGDDMFATFAQIQQKSILVWLFSRLYLYSFISLFIYMILSLFIALITDSYDTIKKFQQ 518

Query: 186 NGFPKSDVIKFMGEIQEDE 204
           NGFP++D+ +F+ E    E
Sbjct: 519 NGFPETDLQEFLKECSSKE 537

Homo sapiens (taxid: 9606)

>sp|Q8K595|MCLN2_MOUSE Mucolipin-2 OS=Mus musculus GN=Mcoln2 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 155/194 (79%), Gaps = 2/194 (1%)

Query: 6   EFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLG 65
           EF+N WYV++  +D++ I+GS +K +I+ K+     +++CS+ LGT  L VW GV+RYLG
Sbjct: 341 EFVNGWYVLVTISDLMTIIGSILKMEIKAKKLTN--YDVCSILLGTSTLFVWVGVIRYLG 398

Query: 66  FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFA 125
           +F+TYNV+ILT++ + PKV RF  CA +IY G+TFCGW+VLGPYH KF +L+  +ECLF+
Sbjct: 399 YFQTYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHEKFENLNIVAECLFS 458

Query: 126 LINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI 185
           L+NGDDMFATF+ + +KS ++W + R+YLYSFISL+IY++LSLFI++I D+Y TIK+Y  
Sbjct: 459 LVNGDDMFATFAQIQQKSILVWLFSRLYLYSFISLFIYMVLSLFIALITDSYHTIKKYQQ 518

Query: 186 NGFPKSDVIKFMGE 199
           +GFP++D+ KF+ E
Sbjct: 519 HGFPETDLQKFLKE 532

Mus musculus (taxid: 10090)

>sp|Q8TDD5|MCLN3_HUMAN Mucolipin-3 OS=Homo sapiens GN=MCOLN3 PE=2 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           +  ++EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV
Sbjct: 331 VSDQMEFVNGWYIMIIISDILTIIGSILKMEIQAKSLTS--YDVCSILLGTSTMLVWLGV 388

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           +RYLGFF  YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  S
Sbjct: 389 IRYLGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVS 448

Query: 121 ECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           ECLF+LINGDDMFATF+ M +KS ++W + RIYLYSFISL+IY+ILSLFI++I D YETI
Sbjct: 449 ECLFSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYETI 508

Query: 181 KQYYINGFPKSDVIKFMGEIQE 202
           KQY  +GFP++++  F+ E ++
Sbjct: 509 KQYQQDGFPETELRTFISECKD 530

Homo sapiens (taxid: 9606)

>sp|Q99J21|MCLN1_MOUSE Mucolipin-1 OS=Mus musculus GN=Mcoln1 PE=1 SV=1

 Score =  224 bits (571), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 149/209 (71%), Gaps = 5/209 (2%)

Query: 4   RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
           RLEF+N WY++++ +DVL I G+ +K  IE K      +++CS+ LGT  LLVW GV+RY
Sbjct: 347 RLEFVNGWYILLVTSDVLTISGTVMKIGIEAKNLA--SYDVCSILLGTSTLLVWVGVIRY 404

Query: 64  LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
           L FF  YN++I TL+ A P V RF  C  +IY G+ FCGW+VLGPYH+KFRSLS  SECL
Sbjct: 405 LTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECL 464

Query: 124 FALINGDDMFATFSIMPKK---SAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           F+LINGDDMF TF+ M  +   S+++W + ++YLYSFISL+IY++LSLFI++I  AY+TI
Sbjct: 465 FSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTI 524

Query: 181 KQYYINGFPKSDVIKFMGEIQEDETNHDF 209
           K     G  KS++  ++ + Q+  T+  F
Sbjct: 525 KHPGGTGTEKSELQAYIEQCQDSPTSGKF 553

Cation channel probably playing a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. Could play a major role in Ca(2+) transport regulating lysosomal exocytosis.

Mus musculus (taxid: 10090)

>sp|Q9GZU1|MCLN1_HUMAN Mucolipin-1 OS=Homo sapiens GN=MCOLN1 PE=1 SV=1

 Score =  224 bits (571), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 149/209 (71%), Gaps = 5/209 (2%)

Query: 4   RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
           RLEF+N WY++++ +DVL I G+ +K  IE K      +++CS+ LGT  LLVW GV+RY
Sbjct: 347 RLEFVNGWYILLVTSDVLTISGTIMKIGIEAKNLA--SYDVCSILLGTSTLLVWVGVIRY 404

Query: 64  LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
           L FF  YN++I TL+ A P V RF  C  +IY G+ FCGW+VLGPYH+KFRSLS  SECL
Sbjct: 405 LTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECL 464

Query: 124 FALINGDDMFATFSIMPK---KSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           F+LINGDDMF TF+ M     +S+++W + ++YLYSFISL+IY++LSLFI++I  AY+TI
Sbjct: 465 FSLINGDDMFVTFAAMQAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTI 524

Query: 181 KQYYINGFPKSDVIKFMGEIQEDETNHDF 209
           K     G  +S++  ++ + Q+  T+  F
Sbjct: 525 KHPGGAGAEESELQAYIAQCQDSPTSGKF 553

Cation channel probably playing a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. Could play a major role in Ca(2+) transport regulating lysosomal exocytosis.

Homo sapiens (taxid: 9606)

>sp|Q60HE8|MCLN1_MACFA Mucolipin-1 OS=Macaca fascicularis GN=MCOLN1 PE=2 SV=1

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 149/209 (71%), Gaps = 5/209 (2%)

Query: 4   RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
           RLEF+N WY++++ +DVL I G+ +K  IE K      +++CS+ LGT  LLVW GV+RY
Sbjct: 347 RLEFVNGWYILLVTSDVLTISGTIMKIGIEAKNLA--SYDVCSILLGTSTLLVWVGVIRY 404

Query: 64  LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
           L FF  YN++I TL+ A P V RF  C  +IY G+ FCGW+VLGPYH+KFRSLS  SECL
Sbjct: 405 LTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECL 464

Query: 124 FALINGDDMFATFSIMPK---KSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           F+LINGDDMF TF+ M     +S+++W + ++YLYSFISL+IY++LSLFI++I  AY+TI
Sbjct: 465 FSLINGDDMFVTFAAMQAQQGRSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTI 524

Query: 181 KQYYINGFPKSDVIKFMGEIQEDETNHDF 209
           K     G  +S++  ++ + Q+  T+  F
Sbjct: 525 KHPGGAGAEESELQAYIAQCQDSPTSGKF 553

Cation channel probably playing a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. Could play a major role in Ca(2+) transport regulating lysosomal exocytosis.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
345495688	634	PREDICTED: mucolipin-3 [Nasonia vitripen	0.555	0.324	0.800	2e-94
383861793	627	PREDICTED: mucolipin-3-like [Megachile r	0.587	0.347	0.756	4e-94
389612283	399	mucolipin, partial [Papilio xuthus]	0.587	0.546	0.743	2e-93
380023520	631	PREDICTED: mucolipin-3-like [Apis florea	0.590	0.347	0.75	4e-93
328792552	631	PREDICTED: mucolipin-3 isoform 2 [Apis m	0.590	0.347	0.75	4e-93
340728455	631	PREDICTED: mucolipin-3-like [Bombus terr	0.665	0.391	0.653	2e-92
350419456	631	PREDICTED: mucolipin-3-like [Bombus impa	0.665	0.391	0.653	2e-92
157120209	686	mucolipin [Aedes aegypti] gi|108883063|g	0.549	0.297	0.764	9e-92
158285161	590	AGAP007710-PA [Anopheles gambiae str. PE	0.547	0.344	0.778	2e-91
312382050	566	hypothetical protein AND_05559 [Anophele	0.598	0.392	0.703	3e-91

>gi|345495688|ref|XP_001606145.2| PREDICTED: mucolipin-3 [Nasonia vitripennis]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/206 (80%), Positives = 187/206 (90%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           +EGRLEFLNLWYVMII ND+L+I+GS+IK+QIERKQ+  D WNLCS+FLGTGNLLVWFGV
Sbjct: 370 LEGRLEFLNLWYVMIIINDLLIIMGSAIKQQIERKQYGNDHWNLCSIFLGTGNLLVWFGV 429

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWLVLGPYHMKFRSL+TTS
Sbjct: 430 LRYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLVLGPYHMKFRSLATTS 489

Query: 121 ECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           ECLFALINGDDMFATFSI   KS MLWWY RIYLY+FISLYIYV+LSLFISVIMDAY+TI
Sbjct: 490 ECLFALINGDDMFATFSITSFKSPMLWWYSRIYLYTFISLYIYVVLSLFISVIMDAYDTI 549

Query: 181 KQYYINGFPKSDVIKFMGEIQEDETN 206
           K YY +GFPK+D+  F+    ++ ++
Sbjct: 550 KVYYRDGFPKNDLQSFVSVCTDEASS 575

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861793|ref|XP_003706369.1| PREDICTED: mucolipin-3-like [Megachile rotundata]

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 190/218 (87%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVL 61
           EGRLEFLNLWYVMII ND+L+I+GS++KEQIERKQF  D WN+CS+FLGTGNLLVWFGVL
Sbjct: 371 EGRLEFLNLWYVMIIVNDLLIIIGSAVKEQIERKQFGSDHWNVCSIFLGTGNLLVWFGVL 430

Query: 62  RYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121
           RYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWL+LGPYHMKFRSL+TTSE
Sbjct: 431 RYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLILGPYHMKFRSLATTSE 490

Query: 122 CLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIK 181
           CLFALINGDDM+ATFSI   KS MLWWY RIYLY+FISLYIYV+LSLFISVIMDAY+TIK
Sbjct: 491 CLFALINGDDMYATFSITSFKSPMLWWYSRIYLYTFISLYIYVVLSLFISVIMDAYDTIK 550

Query: 182 QYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFS 219
            YY +GFPK+D+  F+    ++ ++  +    E +  S
Sbjct: 551 LYYRDGFPKNDLQTFIAACTDEASSGLYRDDSERSDLS 588

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612283|dbj|BAM19650.1| mucolipin, partial [Papilio xuthus]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 190/218 (87%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVL 61
           +GRLEFLN+WY+MII ND+L+I+GS+IKEQIER QF  DQWN+CS+FLG GNLLVWFGVL
Sbjct: 153 DGRLEFLNIWYIMIIVNDLLIIMGSAIKEQIERNQFTNDQWNVCSLFLGLGNLLVWFGVL 212

Query: 62  RYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121
           RYLGFFKTYNVVILTLKKA PK+ RF  CA+L+YAGF FCGWL+LGPYHMKFRSL+TTSE
Sbjct: 213 RYLGFFKTYNVVILTLKKAAPKIFRFSFCALLLYAGFMFCGWLILGPYHMKFRSLATTSE 272

Query: 122 CLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIK 181
           CLF+LINGDDMFATFSIM KKS MLWW+ R+YLYSFISLYIYV+LSLFISVIMDAY+TIK
Sbjct: 273 CLFSLINGDDMFATFSIMSKKSPMLWWFSRVYLYSFISLYIYVVLSLFISVIMDAYDTIK 332

Query: 182 QYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFS 219
           QYY  GFPKSD+  F+GE   +E +   + +  ++S +
Sbjct: 333 QYYSEGFPKSDLQTFIGEPCIEEVSSGLYRTQSSSSLN 370

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023520|ref|XP_003695567.1| PREDICTED: mucolipin-3-like [Apis florea]

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 190/220 (86%), Gaps = 1/220 (0%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           +EGRLEFLNLWYVMII ND+L+I+GS+IKEQIERKQF  D WN+CS+FLGTGNLLVWFGV
Sbjct: 373 LEGRLEFLNLWYVMIIVNDLLIIMGSAIKEQIERKQFGSDHWNICSIFLGTGNLLVWFGV 432

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWL+LGPYHMKFRSL+TTS
Sbjct: 433 LRYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLILGPYHMKFRSLATTS 492

Query: 121 ECLFALINGDDMFATFSIMP-KKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYET 179
           ECLFALINGDDMFATFS     KS MLWWY R+YLY+FISLYIYV+LSLFISVIMDAY+T
Sbjct: 493 ECLFALINGDDMFATFSATSFSKSPMLWWYSRMYLYTFISLYIYVVLSLFISVIMDAYDT 552

Query: 180 IKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFS 219
           IK YY +GFPK+D+  F+    ++ ++  +    E +  S
Sbjct: 553 IKIYYRDGFPKNDLQTFIAACTDEASSGLYKDDSEDSDLS 592

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792552|ref|XP_624283.3| PREDICTED: mucolipin-3 isoform 2 [Apis mellifera]

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 190/220 (86%), Gaps = 1/220 (0%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           +EGRLEFLNLWYVMII ND+L+I+GS+IKEQIERKQF  D WN+CS+FLGTGNLLVWFGV
Sbjct: 373 LEGRLEFLNLWYVMIIVNDLLIIMGSAIKEQIERKQFGSDHWNICSIFLGTGNLLVWFGV 432

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWL+LGPYHMKFRSL+TTS
Sbjct: 433 LRYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLILGPYHMKFRSLATTS 492

Query: 121 ECLFALINGDDMFATFSIMP-KKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYET 179
           ECLFALINGDDMFATFS     KS MLWWY R+YLY+FISLYIYV+LSLFISVIMDAY+T
Sbjct: 493 ECLFALINGDDMFATFSATSFSKSPMLWWYSRMYLYTFISLYIYVVLSLFISVIMDAYDT 552

Query: 180 IKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFS 219
           IK YY +GFPK+D+  F+    ++ ++  +    E +  S
Sbjct: 553 IKIYYRDGFPKNDLQTFIAACTDEASSGLYKDDSEDSDLS 592

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728455|ref|XP_003402540.1| PREDICTED: mucolipin-3-like [Bombus terrestris]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 204/263 (77%), Gaps = 16/263 (6%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           ++GRLEFLNLWYVMII ND+L+I+GS+IKEQIERKQF  D WN+CS+FLGTGNLLVWFGV
Sbjct: 373 LDGRLEFLNLWYVMIIVNDLLIIMGSAIKEQIERKQFGSDHWNICSIFLGTGNLLVWFGV 432

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWL+LGPYH+KFRSL+TTS
Sbjct: 433 LRYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLILGPYHLKFRSLATTS 492

Query: 121 ECLFALINGDDMFATFSIMP-KKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYET 179
           ECLFALINGDDMFATFS     KS +LWWY R+YLY+FISLYIYV+LSLFISVIMDAY+T
Sbjct: 493 ECLFALINGDDMFATFSATSFTKSPILWWYSRMYLYTFISLYIYVVLSLFISVIMDAYDT 552

Query: 180 IKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADR 239
           IK YY +GFPK+D+  F+    +           E +S  +R+      +S  L+   DR
Sbjct: 553 IKIYYRDGFPKNDLQTFIAACTD-----------EASSGLYRDD----SESSDLSELLDR 597

Query: 240 EANGKRRPHLNTRKGEEEEENRK 262
               ++RP   +  G   E + K
Sbjct: 598 FCCCRKRPFYGSFSGSSTEFSTK 620

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419456|ref|XP_003492188.1| PREDICTED: mucolipin-3-like [Bombus impatiens]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 204/263 (77%), Gaps = 16/263 (6%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           ++GRLEFLNLWYVMII ND+L+I+GS+IKEQIERKQF  D WN+CS+FLGTGNLLVWFGV
Sbjct: 373 LDGRLEFLNLWYVMIIVNDLLIIMGSAIKEQIERKQFGSDHWNVCSIFLGTGNLLVWFGV 432

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PKVARFL+CA+LIYAGFTFCGWL+LGPYH+KFRSL+TTS
Sbjct: 433 LRYLGFFKTYNVVILTLKKAAPKVARFLICAILIYAGFTFCGWLILGPYHLKFRSLATTS 492

Query: 121 ECLFALINGDDMFATFSIMP-KKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYET 179
           ECLFALINGDDMFATFS     KS +LWWY R+YLY+FISLYIYV+LSLFISVIMDAY+T
Sbjct: 493 ECLFALINGDDMFATFSATSFTKSPILWWYSRMYLYTFISLYIYVVLSLFISVIMDAYDT 552

Query: 180 IKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALATRADR 239
           IK YY +GFPK+D+  F+    +           E +S  +R+      +S  L+   DR
Sbjct: 553 IKIYYRDGFPKNDLQTFIAACTD-----------EASSGLYRDD----SESSDLSELLDR 597

Query: 240 EANGKRRPHLNTRKGEEEEENRK 262
               ++RP   +  G   E + K
Sbjct: 598 FCCCRKRPFYGSFSGSSTEFSTK 620

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120209|ref|XP_001653550.1| mucolipin [Aedes aegypti] gi|108883063|gb|EAT47288.1| AAEL001557-PA [Aedes aegypti]

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 156/204 (76%), Positives = 185/204 (90%)

Query: 1   MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGV 60
           +EG++EF+N+WY+MI+ ND+LLI+GS++KEQIE+K FI D WNLCS+ LG GNLLVWFGV
Sbjct: 424 IEGKMEFVNMWYIMIVCNDILLIIGSALKEQIEKKHFIADDWNLCSLLLGIGNLLVWFGV 483

Query: 61  LRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTS 120
           LRYLGFFKTYNVVILTLKKA PK+ RFLLCA+LIYAGFTFCGWLVLGPYH+KFRSLSTTS
Sbjct: 484 LRYLGFFKTYNVVILTLKKAAPKILRFLLCALLIYAGFTFCGWLVLGPYHIKFRSLSTTS 543

Query: 121 ECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI 180
           ECLF+LINGDDMFATF+IM +KS MLWW+ RIYLYSF SLYIYV+LSLFISVIMDAY+TI
Sbjct: 544 ECLFSLINGDDMFATFTIMSEKSIMLWWFCRIYLYSFTSLYIYVVLSLFISVIMDAYDTI 603

Query: 181 KQYYINGFPKSDVIKFMGEIQEDE 204
           K+YY +GFP+SD+  F+G    ++
Sbjct: 604 KKYYKDGFPQSDLRLFVGPYHPND 627

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285161|ref|XP_001687855.1| AGAP007710-PA [Anopheles gambiae str. PEST] gi|157019859|gb|EDO64504.1| AGAP007710-PA [Anopheles gambiae str. PEST]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 158/203 (77%), Positives = 184/203 (90%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVL 61
           EG+ EF+N+WY+MI+ ND+LLI+GS++KEQIERK FI D WN+CS+ LG GN LVWFGVL
Sbjct: 334 EGKWEFVNMWYIMIVFNDILLIIGSALKEQIERKHFIADDWNVCSLLLGVGNSLVWFGVL 393

Query: 62  RYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121
           RYLGFFKTYNVVILTLKKA PK++RFLLCA+LIYAGFTFCGWLVLGPYH+KFRSLSTTSE
Sbjct: 394 RYLGFFKTYNVVILTLKKAAPKISRFLLCALLIYAGFTFCGWLVLGPYHIKFRSLSTTSE 453

Query: 122 CLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIK 181
           CLFALINGDDMFATFSIM +KS MLWW+ RIYLYSF SLYIYV+LSLFISVIMDAY+TIK
Sbjct: 454 CLFALINGDDMFATFSIMSEKSLMLWWFCRIYLYSFTSLYIYVVLSLFISVIMDAYDTIK 513

Query: 182 QYYINGFPKSDVIKFMGEIQEDE 204
           +YY +GFP+SD+  F+G I  ++
Sbjct: 514 KYYKDGFPQSDLRLFVGPISPND 536

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382050|gb|EFR27634.1| hypothetical protein AND_05559 [Anopheles darlingi]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/233 (70%), Positives = 196/233 (84%), Gaps = 11/233 (4%)

Query: 2   EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVL 61
           EG+ EF+N+WY+MI+ NDVLLI+GS++KE+IERK FI D WN+CS+ LG GN LVW GVL
Sbjct: 307 EGKWEFVNMWYIMIVFNDVLLIIGSALKEEIERKHFIADDWNVCSLLLGVGNSLVWLGVL 366

Query: 62  RYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121
           RYLGFFKTYNVVILTLKKA PK++RFLLCA+LIYAGFTFCGWLVLGPYH+KFRSLSTTSE
Sbjct: 367 RYLGFFKTYNVVILTLKKAAPKISRFLLCALLIYAGFTFCGWLVLGPYHIKFRSLSTTSE 426

Query: 122 CLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIK 181
           CLFALINGDDMFATFSIM +KS MLWW+ RIYLY+F SLYIYV+LSLFISVIMDAY+TIK
Sbjct: 427 CLFALINGDDMFATFSIMSEKSLMLWWFCRIYLYTFTSLYIYVVLSLFISVIMDAYDTIK 486

Query: 182 QYYINGFPKSDVIKFMGEIQEDETNHDFWSSI-------ETASFSFREQIHKM 227
           +YY +GFP+SD+ +F+G +    T  DF S +       E  + SFR+ I ++
Sbjct: 487 KYYKDGFPQSDLRQFVGPL----TPTDFSSGVFREHEDYELETMSFRDVIKRL 535

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
FB|FBgn0262516	652	trpml "transient receptor pote	0.630	0.358	0.579	4.3e-70
UNIPROTKB|F1NIW3	530	MCOLN3 "Uncharacterized protei	0.530	0.371	0.472	3.1e-51
UNIPROTKB|Q8TDD5	553	MCOLN3 "Mucolipin-3" [Homo sap	0.530	0.356	0.487	4e-51
RGD|1308420	553	Mcoln3 "mucolipin 3" [Rattus n	0.530	0.356	0.482	4e-51
UNIPROTKB|E2RLR6	553	MCOLN3 "Uncharacterized protei	0.530	0.356	0.487	5.1e-51
MGI|MGI:1890500	553	Mcoln3 "mucolipin 3" [Mus musc	0.530	0.356	0.482	5.1e-51
UNIPROTKB|Q8IZK6	566	MCOLN2 "Mucolipin-2" [Homo sap	0.530	0.348	0.472	6.5e-51
UNIPROTKB|E1BDG0	553	MCOLN3 "Uncharacterized protei	0.530	0.356	0.482	2.2e-50
MGI|MGI:1915529	566	Mcoln2 "mucolipin 2" [Mus musc	0.517	0.339	0.463	8.5e-49
ZFIN|ZDB-GENE-040426-2704	581	mcoln1 "mucolipin 1" [Danio re	0.576	0.368	0.451	3e-46

FB|FBgn0262516 trpml "transient receptor potential mucolipin" [Drosophila melanogaster (taxid:7227)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 139/240 (57%), Positives = 169/240 (70%)

Query:     2 EGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVL 61
             +GRLEF+N WY+MII NDVLLI+GS++KEQIE +  + DQW+ CS+FLG GNLLVWFGVL
Sbjct:   398 DGRLEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNLLVWFGVL 457

Query:    62 RYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE 121
             RYLGFFKTYNVVILTLKKA PK+ RFL+ A+LIYAGF FCGWL+LGPYHMKFRSL+TTSE
Sbjct:   458 RYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWLILGPYHMKFRSLATTSE 517

Query:   122 CLFALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIK 181
             CLFALINGDDMFATF+ +  K+  LWW                       VIMDAY+TIK
Sbjct:   518 CLFALINGDDMFATFATLSSKATWLWWFCQIYLYSFISLYIYVVLSLFIAVIMDAYDTIK 577

Query:   182 QYYINGFPKSDVIKFMG-EIQEDETNHDFWSSIETAS-FSFREQIHKMHKSIALATRADR 239
              YY +GFP +D+  F+G    ED ++  F + ++     SF + +    KSI    R  R
Sbjct:   578 AYYKDGFPTTDLKAFVGTRTAEDISSGVFMTDLDDFDQTSFLDVV----KSICCCGRCGR 633

GO:0006816 "calcium ion transport" evidence=ISS

GO:0005262 "calcium channel activity" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0000046 "autophagic vacuole fusion" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0031902 "late endosome membrane" evidence=IDA

UNIPROTKB|F1NIW3 MCOLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 94/199 (47%), Positives = 137/199 (68%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             ++EF+N WY++I+ +DVL I+GS++K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct:   300 QMEFVNGWYILIMVSDVLTIVGSTLKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 357

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             LGFF+ YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH+KFRSL+  SECL
Sbjct:   358 LGFFQKYNLLILTLRAALPNVMRFCCCAAMIYLGYCFCGWIVLGPYHVKFRSLNVVSECL 417

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMFATF+ M +KS ++W                        +I D YETIK Y
Sbjct:   418 FSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMVLSLFIALITDTYETIKHY 477

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++ +F+ + ++
Sbjct:   478 QQDGFPETELQRFISQCKD 496

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

UNIPROTKB|Q8TDD5 MCOLN3 "Mucolipin-3" [Homo sapiens (taxid:9606)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 97/199 (48%), Positives = 134/199 (67%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             ++EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct:   334 QMEFVNGWYIMIIISDILTIIGSILKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             LGFF  YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct:   392 LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSECL 451

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMFATF+ M +KS ++W                        +I D YETIKQY
Sbjct:   452 FSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYETIKQY 511

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++  F+ E ++
Sbjct:   512 QQDGFPETELRTFISECKD 530

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

RGD|1308420 Mcoln3 "mucolipin 3" [Rattus norvegicus (taxid:10116)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 96/199 (48%), Positives = 134/199 (67%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             ++EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct:   334 QMEFINGWYIMIIVSDILTIVGSILKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             LGFF  YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct:   392 LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHEKFRSLNKVSECL 451

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMF+TF+ M +KS ++W                        +I D YETIK Y
Sbjct:   452 FSLINGDDMFSTFAKMQQKSYLVWLFSRVYLYSFISLFIYMILSLFIALITDTYETIKHY 511

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++ KF+ E ++
Sbjct:   512 QQDGFPETELRKFIAECKD 530

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0042491 "auditory receptor cell differentiation" evidence=ISO

UNIPROTKB|E2RLR6 MCOLN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 97/199 (48%), Positives = 134/199 (67%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             R+EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct:   334 RMEFVNGWYIMIIISDMLTIIGSILKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             LGFF+ YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct:   392 LGFFQKYNLLILTLQAALPSVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSECL 451

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMFATF+ M +KS ++W                        +I D YETIK Y
Sbjct:   452 FSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYETIKHY 511

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++  F+ E ++
Sbjct:   512 QQDGFPETELRTFISECKD 530

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1890500 Mcoln3 "mucolipin 3" [Mus musculus (taxid:10090)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 96/199 (48%), Positives = 134/199 (67%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             ++EF+N WY+MII +D+L I+GS +K +I+ K      +++CS+ LGT  +LVW GV+RY
Sbjct:   334 QMEFINGWYIMIIISDILTIVGSVLKMEIQAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             LGFF  YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct:   392 LGFFAKYNLLILTLQAALPNVMRFCCCAAMIYLGYCFCGWIVLGPYHEKFRSLNRVSECL 451

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMF+TF+ M +KS ++W                        +I D YETIK Y
Sbjct:   452 FSLINGDDMFSTFAKMQQKSYLVWLFSRVYLYSFISLFIYMILSLFIALITDTYETIKHY 511

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++ KF+ E ++
Sbjct:   512 QQDGFPETELRKFIAECKD 530

GO:0005216 "ion channel activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

UNIPROTKB|Q8IZK6 MCOLN2 "Mucolipin-2" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 94/199 (47%), Positives = 137/199 (68%)

Query:     6 EFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLG 65
             EF+N WYV++I +D++ I+GS +K +I+ K      ++LCS+FLGT  LLVW GV+RYLG
Sbjct:   341 EFINGWYVLVIISDLMTIIGSILKMEIKAKNLTN--YDLCSIFLGTSTLLVWVGVIRYLG 398

Query:    66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFA 125
             +F+ YNV+ILT++ + PKV RF  CA +IY G+TFCGW+VLGPYH KF +L+T +ECLF+
Sbjct:   399 YFQAYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHDKFENLNTVAECLFS 458

Query:   126 LINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQYYI 185
             L+NGDDMFATF+ + +KS ++W                        +I D+Y+TIK++  
Sbjct:   459 LVNGDDMFATFAQIQQKSILVWLFSRLYLYSFISLFIYMILSLFIALITDSYDTIKKFQQ 518

Query:   186 NGFPKSDVIKFMGEIQEDE 204
             NGFP++D+ +F+ E    E
Sbjct:   519 NGFPETDLQEFLKECSSKE 537

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BDG0 MCOLN3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 96/199 (48%), Positives = 132/199 (66%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             R+EF+N WY+MII +D+L I+GS +K +I  K      +++CS+ LGT  +LVW GV+RY
Sbjct:   334 RMEFVNGWYIMIIISDILTIIGSILKMEIHAKSLTS--YDVCSILLGTSTMLVWLGVIRY 391

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
              GFF+ YN++ILTL+ A P V RF  CA +IY G+ FCGW+VLGPYH KFRSL+  SECL
Sbjct:   392 FGFFQKYNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSECL 451

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMFATF+ M +KS ++W                        +I D YETIK Y
Sbjct:   452 FSLINGDDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMILSLFIALITDTYETIKHY 511

Query:   184 YINGFPKSDVIKFMGEIQE 202
               +GFP++++  F+ E ++
Sbjct:   512 QQDGFPETELRIFISECKD 530

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1915529 Mcoln2 "mucolipin 2" [Mus musculus (taxid:10090)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 90/194 (46%), Positives = 133/194 (68%)

Query:     6 EFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLG 65
             EF+N WYV++  +D++ I+GS +K +I+ K+     +++CS+ LGT  L VW GV+RYLG
Sbjct:   341 EFVNGWYVLVTISDLMTIIGSILKMEIKAKKLTN--YDVCSILLGTSTLFVWVGVIRYLG 398

Query:    66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFA 125
             +F+TYNV+ILT++ + PKV RF  CA +IY G+TFCGW+VLGPYH KF +L+  +ECLF+
Sbjct:   399 YFQTYNVLILTMQASLPKVLRFCACAGMIYLGYTFCGWIVLGPYHEKFENLNIVAECLFS 458

Query:   126 LINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQYYI 185
             L+NGDDMFATF+ + +KS ++W                        +I D+Y TIK+Y  
Sbjct:   459 LVNGDDMFATFAQIQQKSILVWLFSRLYLYSFISLFIYMVLSLFIALITDSYHTIKKYQQ 518

Query:   186 NGFPKSDVIKFMGE 199
             +GFP++D+ KF+ E
Sbjct:   519 HGFPETDLQKFLKE 532

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2704 mcoln1 "mucolipin 1" [Danio rerio (taxid:7955)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 98/217 (45%), Positives = 130/217 (59%)

Query:     4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRY 63
             R+EF+N WY+++I +D+L I GS IK  IE K      ++ C + LGT  LLVW GV+RY
Sbjct:   351 RMEFINGWYILLIISDLLTITGSIIKIGIELKNL--SSYDECGILLGTSTLLVWVGVIRY 408

Query:    64 LGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECL 123
             L FF+ YN++I+TL+ AFP V RF  C  +IY G+ FCGW+VLGPYH+KFRSLS+ SECL
Sbjct:   409 LTFFQKYNILIVTLQAAFPNVIRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSSVSECL 468

Query:   124 FALINGDDMFATFSIMPKKSAMLWWXXXXXXXXXXXXXXXXXXXXXXXVIMDAYETIKQY 183
             F+LINGDDMF TFS M + S ++W                        +I  AYETIK  
Sbjct:   469 FSLINGDDMFVTFSGMQESSMLVWVFSQVYLYTFISLFIYMVLSLFIALITGAYETIKHQ 528

Query:   184 YINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSF 220
                    +D+  F+ E  +   +  F   IET+  SF
Sbjct:   529 TQEPIHITDLHAFIAECTDTPCSGKF-RGIETSPCSF 564

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R4F0	MCLN3_MOUSE	No assigned EC number	0.5678	0.5309	0.3562	yes	N/A
Q8IZK6	MCLN2_HUMAN	No assigned EC number	0.5577	0.5309	0.3480	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	371
pfam08016	423	pfam08016, PKD_channel, Polycystin cation channel	3e-08
PLN03223	1634	PLN03223, PLN03223, Polycystin cation channel prot	2e-06
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	7e-06

>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 55  LVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFR 114
           L W  + + L F +T ++   TL +A  ++  F +  V+++  +   G+L+ G     F 
Sbjct: 304 LTWLKLFKVLRFNRTMSLFTKTLSRALKELLGFAVMFVILFLAYAQLGYLLFGSQVDNFS 363

Query: 115 SLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIM 174
           +   +   LF  + GD  +       +          +   +F+ L I+++L+LF+++I 
Sbjct: 364 NFVKSILTLFRTLCGDFGYTEIFSGNR------VLGPLLFLTFVFLVIFILLNLFLAIIN 417

Query: 175 DAYETI 180
           D+Y  +
Sbjct: 418 DSYVEV 423

This family contains the cation channel region of PKD1 and PKD2 proteins. Length = 423

>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 33   ERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAV 92
            E K  + D +       G   +L+   +L+ + F     V+  TL  A   +  F +   
Sbjct: 1280 EMKNLV-DYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFG 1338

Query: 93   LIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGD-DMFATFSIMPKKSAMLWWYLR 151
            +++ G+ F G ++ G   + F  ++ +   LF  + GD   F     +   + + +    
Sbjct: 1339 MVFVGYAFIGHVIFGNASVHFSDMTDSINSLFENLLGDITYF--NEDLKNLTGLQFVVGM 1396

Query: 152  IYLYSFISLYIYVILSLFISVIMDAYETIKQ 182
            IY YS+      ++ +  +++I DA+  +K 
Sbjct: 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427

Length = 1634

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 28/181 (15%)

Query: 7   FLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGF 66
           F + W ++    D L++L S +         I       S  L    LL    +LR L  
Sbjct: 28  FRSPWNIL----DFLVVLPSLV-------SLILFLLGEDSGLLRVLRLLRLLRLLRLLRR 76

Query: 67  FKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPY--------------HMK 112
           F     ++ +L ++   +   LL  +L+   F   G  + G                +  
Sbjct: 77  FPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSN 136

Query: 113 FRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISV 172
           F S       LF  +  +       +M           +I+   FI L   ++L+L I V
Sbjct: 137 FDSYGEALLWLFRTLTTEGW---GDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNLLIGV 193

Query: 173 I 173
           I
Sbjct: 194 I 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
KOG3733|consensus	566		100.0
PLN03223	1634	Polycystin cation channel protein; Provisional	99.96
KOG2301|consensus	1592		99.96
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	99.91
KOG3599|consensus	798		99.88
KOG2302|consensus	1956		99.73
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.65
KOG2302|consensus	1956		99.57
KOG2301|consensus	1592		99.51
KOG3609|consensus	822		98.89
KOG0510|consensus	929		98.69
KOG3676|consensus	782		98.65
KOG3614|consensus	1381		98.02
KOG3713|consensus	477		97.53
KOG3533|consensus	2706		93.68
PLN03192	823	Voltage-dependent potassium channel; Provisional	93.37
KOG1545|consensus	507		92.86
PRK10537	393	voltage-gated potassium channel; Provisional	82.12

>KOG3733|consensus

Probab=100.00  E-value=1.9e-49  Score=395.71  Aligned_cols=215  Identities=61%  Similarity=1.148  Sum_probs=208.4

Q ss_pred             CcccccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q psy16308          1 MEGRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKA   80 (371)
Q Consensus         1 ~~dKl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~S   80 (371)
                      .+|+++|+|+|+++.+++|+++|+|+++++.+|.+...+  ||+|++++|++.+++|++++|||.|++.+++|+.||++|
T Consensus       333 ~~~rlefvn~wyi~ii~~dvl~i~gs~~k~~iE~K~l~~--yDvCSI~LGtstLLVW~GVIRYLgfF~~YNvlIlTl~~a  410 (566)
T KOG3733|consen  333 FDGRLEFVNGWYIMIIFSDVLTIIGSILKEQIEAKYLVS--YDVCSILLGTSTLLVWFGVIRYLGFFKTYNVLILTLKKA  410 (566)
T ss_pred             cccceeEEeeeeEEeeehhHHHHHHHHHHHHHHHHhhhH--HHHHHHHhCcchhHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            478999999999999999999999999999999887765  999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHH
Q psy16308         81 FPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISL  160 (371)
Q Consensus        81 ip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL  160 (371)
                      +|++++|++|+++||.||++|||++.||||.+|+++.+..+|||++++||+|++||.+|++.+..+|+++++|+||||.|
T Consensus       411 lPkVlRFc~ca~mIYlGy~FCGWIVLGPYHdKFrsLntvsECLFSLINGDDMFaTFA~mqqkS~lvWlFsqiYLYSFISL  490 (566)
T KOG3733|consen  411 LPKVLRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNTVSECLFSLINGDDMFATFATMQQKSTLVWLFSQIYLYSFISL  490 (566)
T ss_pred             hHHHHHHHHHHHHHHHHHhheeeEEecchHHhhhhHHHHHHHHHHhhCchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCCCCccccCccccc
Q psy16308        161 YIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETAS  217 (371)
Q Consensus       161 ~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~sg~~~~~~~~~~  217 (371)
                      ++|++|++|||+|+|+|+++|+.+++|+++.||++|+.+|.++|.+|.|+.+++...
T Consensus       491 fIYmvLSLFIAlItdaYDTIK~~qq~GfpeTdLqafi~ec~d~~~sg~f~~es~~f~  547 (566)
T KOG3733|consen  491 FIYMVLSLFIALITDAYDTIKAYQQDGFPETDLQAFITECADDPSSGKFRTESDDFV  547 (566)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHhhhCCCChhHHHHHHHHhccCCCccceeccCCCce
Confidence            999999999999999999999999999999999999999999999999999876543

>PLN03223 Polycystin cation channel protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=270.50  Aligned_cols=192  Identities=17%  Similarity=0.325  Sum_probs=158.1

Q ss_pred             ccccccceeeeeccchhhhhhhHHHHHHh---h------------hccc-----------------C----------cch
Q psy16308          5 LEFLNLWYVMIIANDVLLILGSSIKEQIE---R------------KQFI-----------------G----------DQW   42 (371)
Q Consensus         5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~------------~~~~-----------------~----------~~~   42 (371)
                      .+|.++||+++++.-++.++...+.....   .            +...                 +          +.+
T Consensus      1209 aYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~ 1288 (1634)
T PLN03223       1209 AYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYF 1288 (1634)
T ss_pred             hHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHH
Confidence            45899999998888888877666532110   0            0000                 0          012


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Q psy16308         43 NLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSEC  122 (371)
Q Consensus        43 ~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~T  122 (371)
                      .++..++|+.+|++|+|+||+|+|+|++++|..||++|+|+++.|+++++++|++||++|+++||...+.|+|+..|+.|
T Consensus      1289 q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~T 1368 (1634)
T PLN03223       1289 QWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINS 1368 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCchh--hhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC-CChhHHHHHHHH
Q psy16308        123 LFALINGDDMF--ATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYING-FPKSDVIKFMGE  199 (371)
Q Consensus       123 LFsl~tGD~~~--dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g-~~~~dl~~Fi~~  199 (371)
                      ||+|++||..+  +.+..+.+.+   +++|++||++|+++++||+||||||||.|+|+++|++..++ ..+.|+-+|+..
T Consensus      1369 LFqMLLGDfdYF~eDLk~l~e~n---rVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~ 1445 (1634)
T PLN03223       1369 LFENLLGDITYFNEDLKNLTGLQ---FVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRD 1445 (1634)
T ss_pred             HHHHHHcCchHHHHHHHhhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Confidence            99999999763  2233332223   48999999999999999999999999999999999986544 468888888876

>KOG2301|consensus

Probab=99.96  E-value=6.4e-29  Score=280.89  Aligned_cols=224  Identities=20%  Similarity=0.282  Sum_probs=189.4

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      +-+|.++||+||++..+++|++.++....+....+       .++..+..+++..|++|+++.+.++++|+.|+..|+|+
T Consensus      1214 ~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~~~~~-------~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~a 1286 (1592)
T KOG2301|consen 1214 RGYFTSAWNVFDFVVTILSIVGIVLSEAVEKYESS-------PTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPA 1286 (1592)
T ss_pred             hHhccccchheEeeeeeHhHHHHHHHHHHHhhccc-------hhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHH
Confidence            45688999999777777777777765555432222       35667788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-------cccCCCCHHHHHHHHHHHHhCCchhhhhhcC-------CC--CC---c
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGP-------YHMKFRSLSTTSECLFALINGDDMFATFSIM-------PK--KS---A  144 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~-------~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l-------~~--~s---~  144 (371)
                      +++++++.+++||+||++||.+||.       .+.||+|+++|+.+||++.||++|.+.+.++       ++  .+   +
T Consensus      1287 l~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~d 1366 (1592)
T KOG2301|consen 1287 LFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTD 1366 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeccccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            9999999999999999999999995       4679999999999999999998776655432       21  11   3


Q ss_pred             cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHH
Q psy16308        145 ML-WWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFRE  222 (371)
Q Consensus       145 ~~-~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~e  222 (371)
                      |+ +.+|.+||+||+++.+||++|||||||+|+|+.+.++.+++++++|+++|++. .++||+++++..-     ..+.+
T Consensus      1367 CGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~-----~~~~~ 1441 (1592)
T KOG2301|consen 1367 CGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPY-----SDLSA 1441 (1592)
T ss_pred             cCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeH-----hhHHH
Confidence            44 78999999999999999999999999999999999988889999999999999 8899988766543     24679


Q ss_pred             HHHhhhhhhhHHhhhch
Q psy16308        223 QIHKMHKSIALATRADR  239 (371)
Q Consensus       223 ll~~~~~~l~~~~~~~~  239 (371)
                      +++.++++|++++.-|+
T Consensus      1442 ~lr~L~ppL~~~k~~~~ 1458 (1592)
T KOG2301|consen 1442 FLRSLDPPLDLGKPNKR 1458 (1592)
T ss_pred             HHHhcCCccccCCCCCc
Confidence            99999999999766555

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=99.91  E-value=8.7e-24  Score=212.57  Aligned_cols=171  Identities=23%  Similarity=0.454  Sum_probs=142.2

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHH--------Hhh-----hcccCc-----chhHHHHHHHHHHHHHHHHHhhhhc
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQ--------IER-----KQFIGD-----QWNLCSVFLGTGNLLVWFGVLRYLG   65 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~--------i~~-----~~~~~~-----~~~v~~illGi~~fl~wlrLLRyLr   65 (371)
                      +.+|.+.||+++++.-++.++...+...        ++.     ..+.+.     ..+..+.++|+.+++.|+|++|+++
T Consensus       237 ~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~  316 (425)
T PF08016_consen  237 RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLR  316 (425)
T ss_pred             hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            3458899999976666555544443321        110     012111     1235678999999999999999999


Q ss_pred             cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcc
Q psy16308         66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAM  145 (371)
Q Consensus        66 f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~  145 (371)
                      ++|++.++..|+++|.++++.|+++++++++|||++|+++||++.++|+|+..|+.|||+++.||..++.+.   +.+  
T Consensus       317 f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~g~~~~~~~~---~~~--  391 (425)
T PF08016_consen  317 FNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLLGDFDYDELY---QAN--  391 (425)
T ss_pred             ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhcCCCchhhhh---ccc--
Confidence            999999999999999999999999999999999999999999999999999999999999999998877433   233  


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308        146 LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI  180 (371)
Q Consensus       146 ~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev  180 (371)
                       +++|++|+++|+++++++++|||+|||.|+|++|
T Consensus       392 -~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~V  425 (425)
T PF08016_consen  392 -PVLGPLFFFSFMFLVFFILLNLFIAIINDSYEEV  425 (425)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             3899999999999999999999999999999975

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=99.88  E-value=6.1e-22  Score=213.96  Aligned_cols=189  Identities=20%  Similarity=0.320  Sum_probs=155.5

Q ss_pred             ccccccceeeeeccchhhhhhhHHHHHHh---h-----------hcccC----cchh-HHHHHHHHHHHHHHHHHhhhhc
Q psy16308          5 LEFLNLWYVMIIANDVLLILGSSIKEQIE---R-----------KQFIG----DQWN-LCSVFLGTGNLLVWFGVLRYLG   65 (371)
Q Consensus         5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~-----------~~~~~----~~~~-v~~illGi~~fl~wlrLLRyLr   65 (371)
                      ..+.+.||+++...+.++++...+.+.-.   .           ..+.+    .+|+ ..++++|+.+|+.|+|+.|+++
T Consensus       494 ~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~  573 (798)
T KOG3599|consen  494 RYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLR  573 (798)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56889999997777666665554433111   0           01221    1122 4668899999999999999999


Q ss_pred             cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcc
Q psy16308         66 FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAM  145 (371)
Q Consensus        66 f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~  145 (371)
                      |+++++++..||.+|.|+|+.|+++++++|++||++|+.+||.+..+|+||.+|+.|+++.+.||.-+.+   +.+.|  
T Consensus       574 f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~~G~~~~~~---i~~~~--  648 (798)
T KOG3599|consen  574 FNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYILGDFCPAE---IFHAN--  648 (798)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHHhccCCccc---cccCC--
Confidence            9999999999999999999999999999999999999999999999999999999999999999766554   33334  


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC-CChhHHHHHHHH
Q psy16308        146 LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYING-FPKSDVIKFMGE  199 (371)
Q Consensus       146 ~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~~g-~~~~dl~~Fi~~  199 (371)
                       .++|++|+.+|++++++|++|||.|||+|+|+++|+...++ .++-++.+++..
T Consensus       649 -r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~~~~~~~~l~~~l~~  702 (798)
T KOG3599|consen  649 -RILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAKERSSEVELIDFLLY  702 (798)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhhccccchhHHHHHHH
Confidence             38999999999999999999999999999999999977663 345566666664

>KOG2302|consensus

Probab=99.73  E-value=5.6e-18  Score=182.31  Aligned_cols=172  Identities=19%  Similarity=0.306  Sum_probs=142.3

Q ss_pred             ccccceeeeeccchhhhhhhHHHHH-Hh-hhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308          7 FLNLWYVMIIANDVLLILGSSIKEQ-IE-RKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV   84 (371)
Q Consensus         7 F~n~WnIf~~I~D~l~IiGsiL~i~-i~-~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L   84 (371)
                      |.|-||-+++-.++++|.|..+... +. ...+.|       ..+.+...++..|+||+|+..-+|+.|+.|..+|+|++
T Consensus      1501 fkdrwnqldlaivlls~mgitleeie~naalpinp-------tiirimrvlriarvlkllkmatgmralldtvvqalpqv 1573 (1956)
T KOG2302|consen 1501 FKDRWNQLDLAIVLLSVMGITLEEIEINAALPINP-------TIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQV 1573 (1956)
T ss_pred             HhhhhhhhhHHHHHHHHhcccHhheeecccCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6799999988888888888777432 11 123333       22345567788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCc-------------ccCCCCHHHHHHHHHHHHhCCch----hhhhhcCCCCC-ccc
Q psy16308         85 ARFLLCAVLIYAGFTFCGWLVLGPY-------------HMKFRSLSTTSECLFALINGDDM----FATFSIMPKKS-AML  146 (371)
Q Consensus        85 ~~Flvl~~lIffgFAilG~~lFG~~-------------~~nF~Tf~~S~~TLFsl~tGD~~----~dtf~~l~~~s-~~~  146 (371)
                      .+..++++++||+||-+|.-+||.-             +.-|++|+.+++|||+..|||+|    .||.++++..+ +..
T Consensus      1574 gnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls 1653 (1956)
T KOG2302|consen 1574 GNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLS 1653 (1956)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhh
Confidence            9999999999999999999999963             45699999999999999999974    46666775443 345


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308        147 WWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI  185 (371)
Q Consensus       147 ~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~  185 (371)
                      .+++++||+||++...|+++|+.|||+|...++..++.+
T Consensus      1654 ~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea~ 1692 (1956)
T KOG2302|consen 1654 QFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQ 1692 (1956)
T ss_pred             hhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhh
Confidence            689999999999999999999999999988887766543

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.68  E-value=1.5e-16  Score=137.61  Aligned_cols=158  Identities=22%  Similarity=0.352  Sum_probs=124.9

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      +..+.++||++++++.+..++..++......+      .   ...+++..+++++|++|+++..+.++.++.++.++.++
T Consensus        26 ~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~   96 (200)
T PF00520_consen   26 RRYFRSWWNWFDFISVIPSIVSVILRSYGSAS------A---QSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPD   96 (200)
T ss_dssp             GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H------H---CHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred             HHHhcChhhccccccccccccccccccccccc------c---cceEEEEEeecccccccccccccccccccccccccccc
Confidence            56688999999544444443333322111000      0   23456778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc-----------------cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCccc
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGPYH-----------------MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAML  146 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~~~-----------------~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~  146 (371)
                      +.+++++++.+.++||++|+.+||+..                 ++|.++..|+.++|++++|+++.+...+.....   
T Consensus        97 l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~---  173 (200)
T PF00520_consen   97 LFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSAR---  173 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTT---
T ss_pred             ccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCcccccccccccc---
Confidence            999999999999999999999999753                 469999999999999999988776654321111   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308        147 WWYLRIYLYSFISLYIYVILSLFISVI  173 (371)
Q Consensus       147 ~vlg~iYfvSFIlL~ifIILNmFIAII  173 (371)
                      ...+.+|+++|++++.++++|++||+|
T Consensus       174 ~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  174 SWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            268999999999999999999999986

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.65  E-value=1.8e-15  Score=161.68  Aligned_cols=175  Identities=13%  Similarity=0.172  Sum_probs=137.1

Q ss_pred             cccccceeeeeccchhhhhhhHHHHHHh---hhc-c---c---C-cchhHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Q psy16308          6 EFLNLWYVMIIANDVLLILGSSIKEQIE---RKQ-F---I---G-DQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVI   74 (371)
Q Consensus         6 ~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~~~-~---~---~-~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi   74 (371)
                      ++.+.||+++++...+.+++.++....-   ... +   .   . +...+...+++++.++.|+|++.|++.++.+..+.
T Consensus       418 y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~  497 (743)
T TIGR00870       418 YIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFALVLSWLNLLYIFRGNQHLGPLQ  497 (743)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhcCchH
Confidence            4789999998766555554433322100   000 0   0   0 00123456889999999999999999999999999


Q ss_pred             HHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCcc-------------------cCCCCHHHHHHHHHHHHhCCchhh
Q psy16308         75 LTLKKAFP-KVARFLLCAVLIYAGFTFCGWLVLGPYH-------------------MKFRSLSTTSECLFALINGDDMFA  134 (371)
Q Consensus        75 ~TL~~Sip-~L~~Flvl~~lIffgFAilG~~lFG~~~-------------------~nF~Tf~~S~~TLFsl~tGD~~~d  134 (371)
                      .++.+.+. ++++|+++++++++||++..+.+|+++.                   ..|+++..|+.+||.++.|...+.
T Consensus       498 i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~lf~~~~G~~~~~  577 (743)
T TIGR00870       498 IMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAYSTLFETSQELFWAIIGLGDLL  577 (743)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCHHHHHHHHHHHHcCCcccc
Confidence            99999999 9999999999999999999999998532                   469999999999999999975442


Q ss_pred             hhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308        135 TFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI  185 (371)
Q Consensus       135 tf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~  185 (371)
                      .   .+  .....++|+++|++|++++..+++||+||++.++|++++++.+
T Consensus       578 ~---~~--~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~  623 (743)
T TIGR00870       578 A---NE--HKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDAD  623 (743)
T ss_pred             c---cc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence            1   11  1122489999999999999999999999999999999998544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG2302|consensus

Probab=99.57  E-value=4.1e-14  Score=153.05  Aligned_cols=173  Identities=18%  Similarity=0.285  Sum_probs=133.9

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      ..+|.+.||++    |.++++-+++++......-  ....+..+ +....+++.+|.||.+++.+++..++-||..|+|.
T Consensus      1187 ~aYl~ssWN~L----Dgflv~vsviDilvs~asa--~g~kILgV-lrvLRlLRtlRpLRviSra~glklVveTL~sSLkp 1259 (1956)
T KOG2302|consen 1187 QAYLRSSWNVL----DGFLVAVSVIDILVSQASA--GGAKILGV-LRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKP 1259 (1956)
T ss_pred             HHHHHHHHHhh----hHHHHHHHHHHHHHHHhhh--hhHHHHHH-HHHHHHHHHhhHHHHHhhcccHHHHHHHHHhcccc
Confidence            45688999999    6666666777665532221  11333332 24557888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC----------------------------cccCCCCHHHHHHHHHHHHhCCchhhh
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGP----------------------------YHMKFRSLSTTSECLFALINGDDMFAT  135 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~----------------------------~~~nF~Tf~~S~~TLFsl~tGD~~~dt  135 (371)
                      +.++.+++.-.|++|+++|..+|-.                            +..||-|+++++++||-+.+-|+|-+.
T Consensus      1260 IgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~I 1339 (1956)
T KOG2302|consen 1260 IGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNI 1339 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhh
Confidence            9999999999999999999999971                            135899999999999999999987765


Q ss_pred             hhc-CCCCC----cc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308        136 FSI-MPKKS----AM--LWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY  183 (371)
Q Consensus       136 f~~-l~~~s----~~--~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~  183 (371)
                      +.+ ++...    +.  ...+-.+||+||.+++.|.++|||+.++.++|..-.+.
T Consensus      1340 myDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh 1394 (1956)
T KOG2302|consen 1340 MYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH 1394 (1956)
T ss_pred             hccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432 22111    10  01355799999999999999999999999999876553

>KOG2301|consensus

Probab=99.51  E-value=1.1e-13  Score=158.15  Aligned_cols=160  Identities=15%  Similarity=0.203  Sum_probs=128.3

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      +.+|..+||+||.+..++.++    ...     ..+      ..-+++.+.++.+|+.|+.++.|.++.|+..+..|..+
T Consensus       500 ~~yF~~~~n~fD~~iv~l~~~----~~~-----~~~------~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~  564 (1592)
T KOG2301|consen  500 RNYFRRGWNIFDLIIVLLSLL----ELL-----LKN------VYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKA  564 (1592)
T ss_pred             HHHHhhhcchheEEEEehhhH----Hhc-----ccc------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHH
Confidence            567999999997655553222    111     111      12345566788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc--c-----CCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHH
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGPYH--M-----KFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYS  156 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~~~--~-----nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvS  156 (371)
                      +++..+.++++.++||.+||.+||..-  .     +|.||..|++++|+ ++|.+|.+++.++.+..  ...+..+||+.
T Consensus       565 l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~--~~~~~~i~Fi~  641 (1592)
T KOG2301|consen  565 LGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAA--GQPLCAIYFIA  641 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHh--ccchhhhHHHH
Confidence            999999999999999999999999642  2     68899999999999 77777777765543322  23677899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy16308        157 FISLYIYVILSLFISVIMDAYETIK  181 (371)
Q Consensus       157 FIlL~ifIILNmFIAII~daYeevK  181 (371)
                      +.++..+++||+|+|++.|+++...
T Consensus       642 ~~l~gn~vvLnlFlAl~~~n~~~~e  666 (1592)
T KOG2301|consen  642 YFLFGNLVVLNLFLALILDNFESDE  666 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhh
Confidence            9999999999999999999998766

>KOG3609|consensus

Probab=98.89  E-value=1.6e-08  Score=109.49  Aligned_cols=176  Identities=16%  Similarity=0.257  Sum_probs=136.6

Q ss_pred             cccccceeeeeccchhhhhhhHHHHHHh---hhcc----cCcchh------HHHHHHHHHHHHHHHHHhhhhccccchHH
Q psy16308          6 EFLNLWYVMIIANDVLLILGSSIKEQIE---RKQF----IGDQWN------LCSVFLGTGNLLVWFGVLRYLGFFKTYNV   72 (371)
Q Consensus         6 ~F~n~WnIf~~I~D~l~IiGsiL~i~i~---~~~~----~~~~~~------v~~illGi~~fl~wlrLLRyLrf~~~i~i   72 (371)
                      ++.+.||++|++...+-++..+++...-   ++.-    .-..|+      +.+.+.+++..|+.+|++-++.-++.+.=
T Consensus       413 y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGP  492 (822)
T KOG3609|consen  413 YLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGP  492 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            3568999999888888887777655321   1111    112222      45688899999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----c-----------CCCCHHHHHHHHHHHHhCCc-hhhhh
Q psy16308         73 VILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH----M-----------KFRSLSTTSECLFALINGDD-MFATF  136 (371)
Q Consensus        73 Li~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~----~-----------nF~Tf~~S~~TLFsl~tGD~-~~dtf  136 (371)
                      |.-.|.+.+.+++.|++++.+++++|++==..++.++.    +           .|+|+..|+.|||=.+.|=. ..++ 
T Consensus       493 lqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti~eS~~tLFWsiFglv~~~~~-  571 (822)
T KOG3609|consen  493 LQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTIGESSKTLFWSIFGLVVLGSV-  571 (822)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccHHHHHHHHHHHHHhcccccce-
Confidence            99999999999999999999999999985555665542    2           49999999999999998722 1111 


Q ss_pred             hcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308        137 SIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY  183 (371)
Q Consensus       137 ~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~  183 (371)
                       .+........++|.+.|.+|.++++.++|||.||+|.++|+++..+
T Consensus       572 -~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~  617 (822)
T KOG3609|consen  572 -VLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDD  617 (822)
T ss_pred             -ecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhc
Confidence             1222222334789999999999999999999999999999999773

>KOG0510|consensus

Probab=98.69  E-value=9.9e-08  Score=103.30  Aligned_cols=143  Identities=15%  Similarity=0.259  Sum_probs=121.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Q psy16308         42 WNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSE  121 (371)
Q Consensus        42 ~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~  121 (371)
                      .....++-++.+++.|++++=+++-+|...+.+.-+..-...++++..++.++.++|++.-+++|+... .|++..-|..
T Consensus       620 ~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~-eFs~p~ms~l  698 (929)
T KOG0510|consen  620 AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSS-EFSNPFMSKL  698 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC-CcCCCcchhh
Confidence            344566778899999999999999999998888888889999999999999999999999999999775 6999999999


Q ss_pred             HHHHHHhCCchhhh--h-hcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308        122 CLFALINGDDMFAT--F-SIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQYYI  185 (371)
Q Consensus       122 TLFsl~tGD~~~dt--f-~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~~~  185 (371)
                      .-|+||.|+..+.-  + .+-...+...++++.+-|++|++++..+++|+.|++-.+--+.+|+.-+
T Consensus       699 ~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~  765 (929)
T KOG0510|consen  699 ETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAE  765 (929)
T ss_pred             hhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            99999999876641  1 1112233445689999999999999999999999998888888887544

>KOG3676|consensus

Probab=98.65  E-value=5.1e-07  Score=97.67  Aligned_cols=161  Identities=19%  Similarity=0.278  Sum_probs=120.2

Q ss_pred             ceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH-hhHHHHHHHH
Q psy16308         11 WYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKK-AFPKVARFLL   89 (371)
Q Consensus        11 WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~-Sip~L~~Flv   89 (371)
                      ++++.++..++++++.++.+..         ......++.++..+.|..+|-|-|-++.+...+.-+.+ -+.++++|++
T Consensus       478 ~~v~~~~~~~l~l~~~~~~i~~---------~~~~~~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~  548 (782)
T KOG3676|consen  478 FHVLGFLQAVLVLVSPVLRLGA---------IKWELALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLL  548 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence            4444455555555544444322         12234556778889999999999988877665555444 3578999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcc----------------cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHH
Q psy16308         90 CAVLIYAGFTFCGWLVLGPYH----------------MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIY  153 (371)
Q Consensus        90 l~~lIffgFAilG~~lFG~~~----------------~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iY  153 (371)
                      +-+++.+||++.-+.+|-+..                .-+.++..++++||....|...++..+.   ...  ++++.+-
T Consensus       549 IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~---~~~--~~~~kil  623 (782)
T KOG3676|consen  549 IYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACEN---TDY--PVLFKIL  623 (782)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhccc---ccc--hHHHHHH
Confidence            999999999999999997531                1266789999999999999776654222   222  4789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308        154 LYSFISLYIYVILSLFISVIMDAYETIKQYYI  185 (371)
Q Consensus       154 fvSFIlL~ifIILNmFIAII~daYeevK~~~~  185 (371)
                      |+.|++++..+++||.||..-++|++|-++.+
T Consensus       624 fv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~  655 (782)
T KOG3676|consen  624 FVAYMILVTILLLNMLIAMMGNTYETVAQESE  655 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Confidence            99999999999999999999999999988663

>KOG3614|consensus

Probab=98.02  E-value=1.3e-05  Score=90.88  Aligned_cols=174  Identities=14%  Similarity=0.236  Sum_probs=130.0

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      |..|.+.||+.+.++-++-++|..+...-.      ..+..-++++.+-.++-.+|++-|+.-++.+.=-+.-+++-+++
T Consensus       856 ~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~------~~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~d  929 (1381)
T KOG3614|consen  856 RVYFADFWNLIDLLAILLFLVGPVLRLLPI------DSIYSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKD  929 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhheeEecCc------cceecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHH
Confidence            456889999998888777788877754321      12333466667777888899999999999999888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-HHHHHHHHHHHHhCCchhhhhhcCC---------------CC---Cc
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGPYHMKFRS-LSTTSECLFALINGDDMFATFSIMP---------------KK---SA  144 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~~~~nF~T-f~~S~~TLFsl~tGD~~~dtf~~l~---------------~~---s~  144 (371)
                      ++.|++++++.+++|++.=-.+--++....-. +-+.+.--+-|+.|..-.+.++.+.               ..   .+
T Consensus       930 mf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~ 1009 (1381)
T KOG3614|consen  930 MFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCP 1009 (1381)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCC
Confidence            99999999999999999887777666544333 3334444555777754333332221               11   11


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16308        145 MLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQY  183 (371)
Q Consensus       145 ~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~~  183 (371)
                      .+.|+.++-.+.|+++...+++|+.||+-...|..+++.
T Consensus      1010 pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 1010 PGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            245899999999999999999999999999999998873

>KOG3713|consensus

Probab=97.53  E-value=0.00063  Score=70.99  Aligned_cols=165  Identities=15%  Similarity=0.159  Sum_probs=101.8

Q ss_pred             ccccc-cccceeeeeccchhhhhhhHHHHHHhhhcc-cCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q psy16308          3 GRLEF-LNLWYVMIIANDVLLILGSSIKEQIERKQF-IGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKA   80 (371)
Q Consensus         3 dKl~F-~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~-~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~S   80 (371)
                      +|++| .++-||+    |++.|.--.+...+..... +....+.....+.+.++++.+|++|+-|++.+++.|..||++|
T Consensus       266 ~k~~F~k~pLNII----DllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S  341 (477)
T KOG3713|consen  266 NKLEFFKSPLNII----DLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRS  341 (477)
T ss_pred             hHHHHHhCcchHH----HHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            57776 5888888    6666653333333221111 0112333334556778889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccCCCCHHHHHHH-HHHHHh---CCchhhhhhcCCCCCcccchhhHHHHH
Q psy16308         81 FPKVARFLLCAVLIYAGFTFCGWLVLGPY-HMKFRSLSTTSEC-LFALIN---GDDMFATFSIMPKKSAMLWWYLRIYLY  155 (371)
Q Consensus        81 ip~L~~Flvl~~lIffgFAilG~~lFG~~-~~nF~Tf~~S~~T-LFsl~t---GD~~~dtf~~l~~~s~~~~vlg~iYfv  155 (371)
                      ...+...++.+.+-..+||-+.+.+=-+. ..+|.|++.+.-= ..+|.|   ||. +       +..    +.|.+-- 
T Consensus       342 ~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm-~-------P~T----~~Gklva-  408 (477)
T KOG3713|consen  342 YRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDM-V-------PVT----VLGKLVA-  408 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCc-c-------ccc----cchHHHH-
Confidence            99998877777666666766655443222 2369988877421 122222   332 2       222    3333322 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16308        156 SFISLYIYVILSLFISVIMDAYETIKQYY  184 (371)
Q Consensus       156 SFIlL~ifIILNmFIAII~daYeevK~~~  184 (371)
                      +=-+++-.+++-|=|.||.++|...-...
T Consensus       409 s~cil~GVLvlAlPItiIv~nF~~~y~~~  437 (477)
T KOG3713|consen  409 SLCILCGVLVLALPITIIVNNFSMYYSEL  437 (477)
T ss_pred             HHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence            22233445567788999999988766543

>KOG3533|consensus

Probab=93.68  E-value=2.4  Score=49.99  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------------------------------------
Q psy16308         69 TYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH--------------------------------------  110 (371)
Q Consensus        69 ~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~--------------------------------------  110 (371)
                      .+.-++.+.-+--..+.--+++.+++.+.|+++|++.|-+.-                                      
T Consensus      2407 TL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc~~enC~~~ 2486 (2706)
T KOG3533|consen 2407 TLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETCPSENCPGL 2486 (2706)
T ss_pred             HHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccCCCCCCCCC
Confidence            344444445555556667788999999999999999997520                                      


Q ss_pred             --------cCCCCHHHHHHHHHHHH---------hCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308        111 --------MKFRSLSTTSECLFALI---------NGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVI  173 (371)
Q Consensus       111 --------~nF~Tf~~S~~TLFsl~---------tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII  173 (371)
                              +.=..--+|..||..++         +|.++-|..+.-....+. ++.-.+|=..|.++.+.|+||+.-+||
T Consensus      2487 ~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~l-F~aRV~YDllFffivIiIVLNLIFGVI 2565 (2706)
T KOG3533|consen 2487 QPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDL-FIARVAYDLLFFFIVIIIVLNLIFGVI 2565 (2706)
T ss_pred             CCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccch-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    01112233444443322         144444443322211111 244557778888888999999999999


Q ss_pred             HhHHHHHHHHHh
Q psy16308        174 MDAYETIKQYYI  185 (371)
Q Consensus       174 ~daYeevK~~~~  185 (371)
                      .|+|...+.++.
T Consensus      2566 IDTFaDLRsEKq 2577 (2706)
T KOG3533|consen 2566 IDTFADLRSEKQ 2577 (2706)
T ss_pred             hhhHHHHHhhhh
Confidence            999999987544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=93.37  E-value=3.2  Score=46.19  Aligned_cols=12  Identities=33%  Similarity=0.432  Sum_probs=6.8

Q ss_pred             HHHHhhhhhhhH
Q psy16308        222 EQIHKMHKSIAL  233 (371)
Q Consensus       222 ell~~~~~~l~~  233 (371)
                      ++++.+.+.|.-
T Consensus       354 ~~l~~Lp~~Lr~  365 (823)
T PLN03192        354 QLIDQLPKSICK  365 (823)
T ss_pred             HHHHHcCHHHHH
Confidence            566666555543

>KOG1545|consensus

Probab=92.86  E-value=0.24  Score=51.09  Aligned_cols=63  Identities=17%  Similarity=0.313  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------ccCCCCHHHHH
Q psy16308         50 GTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPY---------HMKFRSLSTTS  120 (371)
Q Consensus        50 Gi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~---------~~nF~Tf~~S~  120 (371)
                      .+..+.+.+|++|+-|+.+++.+|-.||+.|+..+.-.      ||  |-++|.++|..-         ...|+++..|+
T Consensus       327 RViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL------IF--FlfIgviLFsSavYFAEade~~S~F~SIPdaF  398 (507)
T KOG1545|consen  327 RVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL------IF--FLFIGVILFSSAVYFAEADEPESHFSSIPDAF  398 (507)
T ss_pred             HHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHhceeeeeecCCCccCCCcCcccc
Confidence            34445555666667788899999999999999986421      12  336788888742         24688888775

>PRK10537 voltage-gated potassium channel; Provisional

Probab=82.12  E-value=29  Score=35.90  Aligned_cols=91  Identities=22%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCCCHHHHHHHHHHHHh----CC
Q psy16308         56 VWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGP-YHMKFRSLSTTSECLFALIN----GD  130 (371)
Q Consensus        56 ~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~-~~~nF~Tf~~S~~TLFsl~t----GD  130 (371)
                      +.++++.++.+.+.+.....+..      .-+.++.+...+.|+.+|...+++ ....+.++..|+---+..++    ||
T Consensus       114 ~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGd  187 (393)
T PRK10537        114 CIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGD  187 (393)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCC
Confidence            33445555555555444433332      233445555667888999888875 33456777777762222222    23


Q ss_pred             chhhhhhcCCCCCcccchhhHHHHHHHHHHHHHH
Q psy16308        131 DMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYV  164 (371)
Q Consensus       131 ~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifI  164 (371)
                      .        .+.+    ..|+++..+.+++.+.+
T Consensus       188 i--------~p~t----~~grl~~i~~ii~Gi~v  209 (393)
T PRK10537        188 I--------VPVS----ESARLFTISVIILGITV  209 (393)
T ss_pred             C--------CCCC----HHHHHHHHHHHHHHHHH
Confidence            2        1112    45777777777655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	5e-07

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 33  ERKQFIGDQWN-------LCSVFLGTGNLLVW-----FGVLRYLGFFKTYNVVILTLKKA 80
            R  F  D W+         S+   +    +        + R +        ++  L   
Sbjct: 85  HRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISV 144

Query: 81  FPKVARFLLCAVLIYAGFTFCGWLVLGP-YHMKFRSLSTTSECLFALINGDDMFATFSIM 139
            P +   +    L +  F      + G  +   F +L  +   LF ++  +        +
Sbjct: 145 IPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLES---WSMGI 201

Query: 140 PKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ 182
            +    ++ Y  ++   FI +  +V+++L +++ +DA   + Q
Sbjct: 202 VRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 57/435 (13%), Positives = 113/435 (25%), Gaps = 168/435 (38%)

Query: 4   RLEFLNLWYVMIIAN----DVLLILGSSIKEQIERKQFIGDQWNL-CSVFLGTGNLLVWF 58
           R+  +      ++ +    + LL+L       ++  +   + +NL C + L T       
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL-----LNVQNAKAW-NAFNLSCKILLTTRFK---- 275

Query: 59  GVLRYLGFFKTYNVVILTLKKAFPK------VARFLLCAV----------------LIYA 96
            V  +L    T ++ +               + ++L C                  +I  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 97  GF-----TFCGWLVLGPYHMKFRSLSTTSE-CLFALINGD--DMFATFSIMPKKS----- 143
                  T+  W      H+    L+T  E  L  L   +   MF   S+ P  +     
Sbjct: 336 SIRDGLATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 144 --AMLWWYLRIYLYSFI-------SL-------YIYVILSLFISV-------------IM 174
             +++W+ +       +       SL           I S+++ +             I+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 175 DAYETIKQYYINGFPKSDVIKFMGEIQEDETNHDFWSSIETASFSFREQIHKMHKSIALA 234
           D Y   K +  +                D   + +               H  H      
Sbjct: 451 DHYNIPKTFDSDDLIPP---------YLD--QYFYS--------------HIGH------ 479

Query: 235 TRADREANGKRRPHLNTRKGEEEEENRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKR 294
                        HL  +  E  E    F    L +R                F+++K R
Sbjct: 480 -------------HL--KNIEHPERMTLFRMVFLDFR----------------FLEQKIR 508

Query: 295 LLGGKSPKTGLRTWEYRKRPPEVLCDVCFYWAQALNSSNNRKQRCVLSNQKTWCTVIIKK 354
                        W         L  + FY     ++    ++              +  
Sbjct: 509 HDS--------TAWNASGSILNTLQQLKFYKPYICDNDPKYERL-------------VNA 547

Query: 355 NIHF-PALATHLELS 368
            + F P +  +L  S
Sbjct: 548 ILDFLPKIEENLICS 562

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 76/207 (36%)

Query: 189 PKSDVIKFMGEIQEDETNHDF-WSSIETASFSFREQIHKMHKSIALATRADREANGKRRP 247
            +  V KF+ E+     N+ F  S I+T                             R+P
Sbjct: 75  QEEMVQKFVEEV--LRINYKFLMSPIKTEQ---------------------------RQP 105

Query: 248 HLNTRKGEEEEE-----NRKFPDYNLSYRVILVLNQSTITRSERPFVKKKKRLL------ 296
            + TR   E+ +     N+ F  YN             ++R  +P++K ++ LL      
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN-------------VSR-LQPYLKLRQALLELRPAK 151

Query: 297 -----G----GKSPKTG--LRTWEYRKRPP-EVLCDVCFYWAQALNSSNNRKQRCVLSNQ 344
                G    GK+        +++ + +   ++      +W   LN  N      VL   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI------FW---LNLKNCNSPETVLEML 202

Query: 345 KTWCTVIIKKNIHFPALATHLELSLSS 371
           +     I          +++++L + S
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHS 229

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 27/168 (16%)

Query: 34  RKQFIGDQWN-------LCSV--FLGTGNLLVW-----FGVLRYLGFFKTYNVVILTLKK 79
           +  F    WN         S+       + LV      F VLR +        +I  + +
Sbjct: 69  KADFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILE 128

Query: 80  AFPKVARFLLCAVLIYAGFTFCGWLVLGPYHMK-FRSLSTTSECLFALINGDD----MFA 134
           +  +V    L   +I   +   G ++ G      +  L  +   LF ++        M  
Sbjct: 129 SVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLP 188

Query: 135 TFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ 182
              I          +  +Y +SFI +    IL+L I++++D     K 
Sbjct: 189 MQEIYW--------WSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.9
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.82
4f4l_A	112	ION transport protein; alpha helical membrane prot	99.78
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.48
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.05
2kav_A	129	Sodium channel protein type 2 subunit alpha; volta	98.54
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	97.61
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	96.75
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	95.78
2a9h_A	155	Voltage-gated potassium channel; potassium channel	94.38
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	91.67
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	80.09

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.90  E-value=4.3e-24  Score=195.22  Aligned_cols=157  Identities=20%  Similarity=0.286  Sum_probs=127.0

Q ss_pred             ccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308          5 LEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV   84 (371)
Q Consensus         5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L   84 (371)
                      ..|.++||++    |+++++.++++...      +       ..+.+.++++.+|++|++++.|+++.+..|+.+|.|++
T Consensus        71 ~y~~~~wni~----D~~~v~~~~i~~~~------~-------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l  133 (229)
T 4dxw_A           71 DFFKSGWNIF----DTVIVAISLIPIPN------N-------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRV  133 (229)
T ss_dssp             ----CHHHHH----HHHHHHHTTCC---------------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHH----HHHHHHHHHhhcCc------c-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4578999999    66666655554321      0       01122346778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHH
Q psy16308         85 ARFLLCAVLIYAGFTFCGWLVLGPYH-MKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIY  163 (371)
Q Consensus        85 ~~Flvl~~lIffgFAilG~~lFG~~~-~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~if  163 (371)
                      .++++++++++++||++|+.+||... ++|+|+++|+.++|++++||++.|.+.+..+.+    .++.+||++|+++..+
T Consensus       134 ~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~----~~~~~~f~~~~~i~~~  209 (229)
T 4dxw_A          134 FFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIY----WWSWVYFFSFIIICSI  209 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTC----TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhC----CcHHHHHHHHHHHHHH
Confidence            99999999999999999999999865 479999999999999999999988765543333    3688999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q psy16308        164 VILSLFISVIMDAYETIKQ  182 (371)
Q Consensus       164 IILNmFIAII~daYeevK~  182 (371)
                      +++|||+|||.|+|+++++
T Consensus       210 i~lNlfiavi~~~f~~~~~  228 (229)
T 4dxw_A          210 TILNLVIAILVDVVIQKKL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999997654

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.82  E-value=1.6e-20  Score=176.66  Aligned_cols=159  Identities=15%  Similarity=0.242  Sum_probs=125.4

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      +..|.++||++    |+++++.+++...      .+         +++..+++++|++|+++++++++.+..|+.++.|+
T Consensus        87 ~~y~~~~wn~~----Dl~~v~~~~i~~~------~~---------~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~  147 (285)
T 3rvy_A           87 ISFFKDPWSLF----DFFVVAISLVPTS------SG---------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG  147 (285)
T ss_dssp             GGGGGCHHHHH----HHHHHHHHHSCSS------SS---------CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGG
T ss_pred             HHHHcCChHHh----HHHHHHHHHHccc------ch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999    6666665554321      11         23456778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCHHHHHHHHHHHHhCCchh-hhhhcCCCCCcccchhhHHHHHHHHHHH
Q psy16308         84 VARFLLCAVLIYAGFTFCGWLVLGPYHM-KFRSLSTTSECLFALINGDDMF-ATFSIMPKKSAMLWWYLRIYLYSFISLY  161 (371)
Q Consensus        84 L~~Flvl~~lIffgFAilG~~lFG~~~~-nF~Tf~~S~~TLFsl~tGD~~~-dtf~~l~~~s~~~~vlg~iYfvSFIlL~  161 (371)
                      +.++++++++++++||++|+.+||...+ +|+|++.|+.++|.++|++++. |.+......+    .+|.+|+++|++++
T Consensus       148 l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~----~~~~~~f~~~~~i~  223 (285)
T 3rvy_A          148 MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVY----PYAWVFFIPFIFVV  223 (285)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTC----TTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcC----ChHHhhHHHHHHHH
Confidence            9999999999999999999999997654 5999999999999999998776 6542222223    36889999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHh
Q psy16308        162 IYVILSLFISVIMDAYETIKQYYI  185 (371)
Q Consensus       162 ifIILNmFIAII~daYeevK~~~~  185 (371)
                      .++++|||+|||.++|++.+++++
T Consensus       224 ~~~~lnl~~aii~~~f~~~~~~~~  247 (285)
T 3rvy_A          224 TFVMINLVVAICVDAMAILNQKEE  247 (285)
T ss_dssp             HHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887554

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=99.78  E-value=8.8e-20  Score=153.17  Aligned_cols=105  Identities=17%  Similarity=0.181  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCHHHHHHHHHHHHhCCchhhhh-hcCCCCCcccchhhHHHHHHH
Q psy16308         80 AFPKVARFLLCAVLIYAGFTFCGWLVLGPYHM-KFRSLSTTSECLFALINGDDMFATF-SIMPKKSAMLWWYLRIYLYSF  157 (371)
Q Consensus        80 Sip~L~~Flvl~~lIffgFAilG~~lFG~~~~-nF~Tf~~S~~TLFsl~tGD~~~dtf-~~l~~~s~~~~vlg~iYfvSF  157 (371)
                      |.+.+.++++++++++++||++|+.+||...+ +|+|+++|+.|||+++|||+|.+.+ +.+.+.+    ..+.+||++|
T Consensus         2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~----~~a~iyFi~f   77 (112)
T 4f4l_A            2 SHMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVH----PNAWVFFIPF   77 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTS----TTTHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcC----cHHHHHHHHH
Confidence            56788999999999999999999999998754 6999999999999999999886543 2333333    4678999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q psy16308        158 ISLYIYVILSLFISVIMDAYETIKQYYINGF  188 (371)
Q Consensus       158 IlL~ifIILNmFIAII~daYeevK~~~~~g~  188 (371)
                      +++..++++|+|+|||.|+|++.++++++..
T Consensus        78 i~i~~fi~lNLfiaVi~~~f~~~~~~~~~~~  108 (112)
T 4f4l_A           78 IMLTTFTVLNLFIGIIVDAMAITKEQEEEAK  108 (112)
T ss_dssp             HHHHHHHHHHHHTTTC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.48  E-value=4e-13  Score=137.96  Aligned_cols=187  Identities=10%  Similarity=0.055  Sum_probs=121.0

Q ss_pred             ccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHHH
Q psy16308          5 LEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPKV   84 (371)
Q Consensus         5 l~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L   84 (371)
                      ..|.++||++    |+++|+.+++.........++..+......+.+..+++.+|++|++++.++++.+..|+..|++.+
T Consensus       268 ~Y~ks~wnii----Dli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l  343 (514)
T 2r9r_B          268 GFFTNIMNII----DIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMREL  343 (514)
T ss_dssp             SSTTSHHHHH----HHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHH
T ss_pred             HHHhchhHHH----HHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3467899999    566666555544332111111001111123455667777888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCc-ccCCCCHHHHHHHHHHHHhCCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHH
Q psy16308         85 ARFLLCAVLIYAGFTFCGWLVLGPY-HMKFRSLSTTSECLFALINGDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIY  163 (371)
Q Consensus        85 ~~Flvl~~lIffgFAilG~~lFG~~-~~nF~Tf~~S~~TLFsl~tGD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~if  163 (371)
                      ..+++++++.++.||.+++...+.. ..+|.++..|+...+..+++.+.-|    +.+.+    ..|++ +.++++++.+
T Consensus       344 ~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGD----i~P~t----~~gr~-f~~~~~l~G~  414 (514)
T 2r9r_B          344 GLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGD----MVPTT----IGGKI-VGSLCAIAGV  414 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSS----SCCCS----HHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCC----CCCCC----cchHh-hehhHHHHHH
Confidence            9988888888999999999887753 4579999999999999999654332    22222    45655 5567777889


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHhccCCC
Q psy16308        164 VILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGEIQEDET  205 (371)
Q Consensus       164 IILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~~~~dp~  205 (371)
                      +++|++||+|.++|++..+.++.. .+.++...+..|.+.|.
T Consensus       415 ~~l~l~iavI~~~f~~~~~~~~~~-~~~~l~~h~iicg~~~~  455 (514)
T 2r9r_B          415 LTIALPVPVIVSNFNYFYHRETEG-EEQAQYLQVTSSPKIPS  455 (514)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCEEEeCCCcc
Confidence            999999999999999987744432 33445555555666654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.05  E-value=1.1e-09  Score=105.32  Aligned_cols=120  Identities=10%  Similarity=0.053  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhhccccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCHHHHHHHHHHHHhCCch
Q psy16308         54 LLVWFGVLRYLGFFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGPYH-MKFRSLSTTSECLFALINGDDM  132 (371)
Q Consensus        54 fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~~~-~nF~Tf~~S~~TLFsl~tGD~~  132 (371)
                      +++.+|++|++++.+.++.+..++.++.+.+..+++.+++++++||.+++.+.+... ++|+++..|+...+..++.-+.
T Consensus        99 ~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGy  178 (355)
T 3beh_A           99 LYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGY  178 (355)
T ss_dssp             GGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCC
Confidence            556689999999999999999999999999999999999999999999999998653 3699999999999988884332


Q ss_pred             hhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16308        133 FATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ  182 (371)
Q Consensus       133 ~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~  182 (371)
                      -|    +.+.+    ..|+++. ++++++.++++++++++|.+.+.+..+
T Consensus       179 gd----~~p~t----~~~~~~~-~~~~~~g~~~~~~~~~~i~~~~~~~~~  219 (355)
T 3beh_A          179 GD----TIPQS----FAGRVLA-GAVMMSGIGIFGLWAGILATGFYQEVR  219 (355)
T ss_dssp             SS----SCCCS----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC----CCCCC----hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    22222    4677765 456666789999999999999886544

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A

Probab=98.54  E-value=4.7e-09  Score=90.81  Aligned_cols=66  Identities=8%  Similarity=0.090  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHHHHHhhhhhhhHHh
Q psy16308        165 ILSLFISVIMDAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFREQIHKMHKSIALAT  235 (371)
Q Consensus       165 ILNmFIAII~daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~ell~~~~~~l~~~~  235 (371)
                      ++|||||||+|+|+.+.++++.+++++|+++|++. +++||.++++-.-     ..+.+++..+.++|.+.+
T Consensus        14 ~LNLfIAVIlenF~~~~~~~~~~l~~~dl~~F~~~W~~fDP~aTg~I~~-----~~L~~ll~~L~pPLgi~k   80 (129)
T 2kav_A           14 LVPRGSHMASENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEF-----AKLSDFADALDPPLLIAK   80 (129)
T ss_dssp             ----------CCSCCTTSSCSCSSCHHHHHHHHHHHHHHCTTCCCEECG-----GGHHHHHHHSCTTSCCCT
T ss_pred             hhheeeeeeeccHHHHHHhhccCCCHHHHHHHHHHHHhcCCCCceEEeH-----HHHHHHHHhCCccccCCC
Confidence            69999999999999999988888999999999999 8999988887663     358899999999998855

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=97.61  E-value=0.0015  Score=58.74  Aligned_cols=117  Identities=11%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhhhhc-cccchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCCCCHHHHHHHHHHHHh
Q psy16308         52 GNLLVWFGVLRYLG-FFKTYNVVILTLKKAFPKVARFLLCAVLIYAGFTFCGWLVLGP--YHMKFRSLSTTSECLFALIN  128 (371)
Q Consensus        52 ~~fl~wlrLLRyLr-f~~~i~iLi~TL~~Sip~L~~Flvl~~lIffgFAilG~~lFG~--~~~nF~Tf~~S~~TLFsl~t  128 (371)
                      ..+++.+|++|.++ +.+..+.+..+++.  +.+...+..++++.+.+|.. +..+..  ..++|.++..|+--.+..++
T Consensus       102 lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~s~y~~~~t~t  178 (223)
T 1orq_C          102 VRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGAFA-IYIVEYPDPNSSIKSVFDALWWAVVTAT  178 (223)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTCSCCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHhCCcCCCcCcchhHHHhHHhHHh
Confidence            34445555555555 23334555555543  34555555555555555543 333332  23468999999998888777


Q ss_pred             CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308        129 GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI  180 (371)
Q Consensus       129 GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev  180 (371)
                      .-+.-|    +.+.+    ..|+++... .++.-..+++++++++.+.+++.
T Consensus       179 TvGyGd----i~P~t----~~~~~~~~~-~~~~G~~~~~~~i~~i~~~~~~~  221 (223)
T 1orq_C          179 TVGYGD----VVPAT----PIGKVIGIA-VMLTGISALTLLIGTVSNMFQKI  221 (223)
T ss_dssp             TCCCCS----SCCCS----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC----CCCCC----HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            322111    22222    467776644 44456678899999999888764

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=96.75  E-value=0.0011  Score=56.29  Aligned_cols=68  Identities=13%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             ccccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhH
Q psy16308          3 GRLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFP   82 (371)
Q Consensus         3 dKl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip   82 (371)
                      +|++|+. ||++    |+++|+.+.+.... +..     ..    .+.+..+++.+|++|+.++.++++.+..|+.+|.+
T Consensus        63 ~~~~y~~-~nii----Dllailp~~~~~~~-~~~-----l~----~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~  127 (132)
T 1ors_C           63 DPAGYVK-KTLY----EIPALVPAGLLALI-EGH-----LA----GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAAD  127 (132)
T ss_dssp             STTTTTT-TCGG----GTGGGSCHHHHHHH-HHH-----HH----HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHH-HHHH----HHHHHHHHHHHHHh-cch-----HH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5777777 9999    55556555544433 110     11    12344677889999999999999999999999999


Q ss_pred             HHH
Q psy16308         83 KVA   85 (371)
Q Consensus        83 ~L~   85 (371)
                      ++.
T Consensus       128 ~l~  130 (132)
T 1ors_C          128 KLV  130 (132)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            874

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=95.78  E-value=0.001  Score=59.77  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHH-hccCCCCCccccCcccccCcHHHHHHhhhhhhhHHh
Q psy16308        175 DAYETIKQYYINGFPKSDVIKFMGE-IQEDETNHDFWSSIETASFSFREQIHKMHKSIALAT  235 (371)
Q Consensus       175 daYeevK~~~~~g~~~~dl~~Fi~~-~~~dp~sg~~~~~~~~~~~s~~ell~~~~~~l~~~~  235 (371)
                      |+|+.++++++.+++++|+++|+.. +++||.+++|-.-     ..+.+++..+.++|.+++
T Consensus         1 eNF~~~t~d~~~~L~~~dl~~F~~~W~~fDP~ATgfI~~-----~~L~~~l~~L~pPLg~~k   57 (168)
T 4dck_A            1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEY-----SVLSDFADALSEPLRIAK   57 (168)
T ss_dssp             ---CBCCTTCSSCBCHHHHHHHHHHHHHHCTTCCSEEEG-----GGHHHHHHHSCTTTCCCS
T ss_pred             CchhhhhhccccCCCHHHHHHHHHHHHHhCCCCcceeeH-----HHHHHHHHhcCCCCcCCC
Confidence            5677788878889999999999999 8999999888663     358899999999998854

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=94.38  E-value=0.16  Score=44.40  Aligned_cols=58  Identities=9%  Similarity=-0.058  Sum_probs=35.6

Q ss_pred             ccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16308        110 HMKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETI  180 (371)
Q Consensus       110 ~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeev  180 (371)
                      ..+|.++..|+---+..++    ||.        .+.+    ..|+++...++++ -..++-+.++++.+.+.+.
T Consensus        79 ~~~~~s~~~a~y~s~vTltTVGYGDi--------~P~t----~~gr~~~~~~~l~-Gv~~~a~~~~~i~~~~~~~  140 (155)
T 2a9h_A           79 GAALISYPDALWWSVETATTVGYGDL--------YPVT----LWGRCVAVVVMVA-GITSYGLVFAAVATWFVGR  140 (155)
T ss_dssp             CSSTTSHHHHHHHHHHHHTTCCCSSS--------CCCS----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCcccceeheeeeeeecccCCCC--------CCCC----hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            3468999998876555555    342        1222    4677776655554 4556677777777666543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=91.67  E-value=3  Score=34.46  Aligned_cols=59  Identities=8%  Similarity=0.001  Sum_probs=37.8

Q ss_pred             cCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16308        111 MKFRSLSTTSECLFALIN----GDDMFATFSIMPKKSAMLWWYLRIYLYSFISLYIYVILSLFISVIMDAYETIKQ  182 (371)
Q Consensus       111 ~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~daYeevK~  182 (371)
                      +++.++..|+---+..++    ||.        .+.+    ..|+++...++++ -..++-+.++.+.+.+.+..+
T Consensus        57 ~~~~~~~~a~y~~~~T~tTvGyGDi--------~P~t----~~gr~~~~~~~~~-Gi~~~~~~~~~i~~~~~~~~~  119 (122)
T 2ih3_C           57 AQLITYPRALWWACETATTVAYGDL--------YPVT----LWGRLVAVVVMVA-GITSFGLVTAALATWFVGREQ  119 (122)
T ss_dssp             CCCCSHHHHHHHHHHHHTTCCCSSS--------CCCS----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccccchhheeeeeeeeecCCC--------CCCC----ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            468899888865555544    342        1222    4677777655554 455677888888887776655

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=80.09  E-value=13  Score=31.24  Aligned_cols=89  Identities=9%  Similarity=0.057  Sum_probs=42.8

Q ss_pred             cchHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHh----CCchhhhhhcCCCC
Q psy16308         68 KTYNVVILTLKKAFPK-VARFLLCAVLIYAGFTFCGWLVLGPYHMKFRSLSTTSECLFALIN----GDDMFATFSIMPKK  142 (371)
Q Consensus        68 ~~i~iLi~TL~~Sip~-L~~Flvl~~lIffgFAilG~~lFG~~~~nF~Tf~~S~~TLFsl~t----GD~~~dtf~~l~~~  142 (371)
                      ..++.+...+.++.+. .+.+.+++++++++++.+++...    ++ -++..|+--.+..++    ||.        .+.
T Consensus         9 ~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----e~-~~~~~a~y~~~~t~tTvGyGd~--------~p~   75 (148)
T 3vou_A            9 LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTV----EG-LRPLDALYFSVVTLTTVGDGNF--------SPQ   75 (148)
T ss_dssp             HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHT----SC-CCHHHHHHHHHHHHTTCCCSSC--------CCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHccCCCCC--------CCC
Confidence            3444445555555433 33334444444444444444322    22 256666655444444    342        112


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16308        143 SAMLWWYLRIYLYSFISLYIYVILSLFISVIM  174 (371)
Q Consensus       143 s~~~~vlg~iYfvSFIlL~ifIILNmFIAII~  174 (371)
                      +    ..++++.+.++++.+.++. ++++.+.
T Consensus        76 t----~~~r~~~~~~~~~g~~~~~-~~~~~~~  102 (148)
T 3vou_A           76 T----DFGKVFTILYIFIGIGLVF-GFIHKLA  102 (148)
T ss_dssp             S----HHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             C----ccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            2    4677877777776544433 4444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	95.17

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.17  E-value=0.01  Score=48.35  Aligned_cols=66  Identities=15%  Similarity=0.095  Sum_probs=45.1

Q ss_pred             cccccccceeeeeccchhhhhhhHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhHH
Q psy16308          4 RLEFLNLWYVMIIANDVLLILGSSIKEQIERKQFIGDQWNLCSVFLGTGNLLVWFGVLRYLGFFKTYNVVILTLKKAFPK   83 (371)
Q Consensus         4 Kl~F~n~WnIf~~I~D~l~IiGsiL~i~i~~~~~~~~~~~v~~illGi~~fl~wlrLLRyLrf~~~i~iLi~TL~~Sip~   83 (371)
                      |++ +..||++    |+++++.+.+.......      .    -.+.+..+++.+|++|++++.++++.++.++..|.++
T Consensus        64 ~~~-~~~~~~i----Dl~ai~p~~~~~~~~~~------~----~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~  128 (132)
T d1orsc_          64 PAG-YVKKTLY----EIPALVPAGLLALIEGH------L----AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK  128 (132)
T ss_dssp             TTT-TTTTCGG----GTGGGSCHHHHHHHHHH------H----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cce-eCCcchH----HHHHHHHHHHHHhhhhh------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444 4578887    55555554443332111      0    1124456778899999999999999999999999998


Q ss_pred             H
Q psy16308         84 V   84 (371)
Q Consensus        84 L   84 (371)
                      +
T Consensus       129 l  129 (132)
T d1orsc_         129 L  129 (132)
T ss_dssp             H
T ss_pred             h
Confidence            6